Query psy8829
Match_columns 205
No_of_seqs 238 out of 2079
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 20:14:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0047|consensus 100.0 3.1E-35 6.6E-40 259.2 6.6 133 73-205 339-473 (505)
2 cd08156 catalase_clade_3 Clade 100.0 1.6E-34 3.5E-39 261.0 7.7 133 71-205 272-407 (429)
3 cd08154 catalase_clade_1 Clade 100.0 7E-34 1.5E-38 258.6 7.8 134 70-205 313-447 (469)
4 cd08155 catalase_clade_2 Clade 100.0 6.4E-33 1.4E-37 251.1 7.6 134 70-205 278-421 (443)
5 PLN02609 catalase 100.0 1.1E-32 2.5E-37 251.5 8.3 133 70-204 328-461 (492)
6 COG0753 KatE Catalase [Inorgan 100.0 3.4E-32 7.3E-37 243.6 8.0 138 66-205 323-466 (496)
7 cd08157 catalase_fungal Fungal 100.0 1.3E-31 2.7E-36 244.4 8.3 129 76-205 294-428 (451)
8 cd00328 catalase Catalase heme 100.0 9.7E-32 2.1E-36 243.4 7.3 134 70-205 271-411 (433)
9 PRK11249 katE hydroperoxidase 100.0 1.3E-29 2.8E-34 241.3 7.5 134 70-205 392-537 (752)
10 cd08156 catalase_clade_3 Clade 99.8 9.5E-21 2.1E-25 171.6 6.3 101 1-102 324-426 (429)
11 cd08154 catalase_clade_1 Clade 99.8 2.5E-20 5.5E-25 170.1 6.7 101 1-102 366-466 (469)
12 cd08155 catalase_clade_2 Clade 99.8 1.5E-19 3.3E-24 164.2 6.5 101 1-102 332-440 (443)
13 cd08157 catalase_fungal Fungal 99.8 3.2E-19 7E-24 163.1 6.1 102 1-102 342-447 (451)
14 PLN02609 catalase 99.8 9.2E-19 2E-23 160.4 6.6 101 1-102 381-483 (492)
15 KOG0047|consensus 99.7 1.4E-18 3.1E-23 154.0 6.4 101 1-101 389-491 (505)
16 cd00328 catalase Catalase heme 99.7 2.7E-18 5.8E-23 156.0 6.2 101 1-102 324-430 (433)
17 PF06628 Catalase-rel: Catalas 99.7 3.5E-18 7.6E-23 118.3 1.9 61 40-101 2-63 (68)
18 COG0753 KatE Catalase [Inorgan 99.7 3.2E-17 7E-22 147.6 5.4 101 1-102 380-485 (496)
19 PRK11249 katE hydroperoxidase 99.7 8E-17 1.7E-21 154.1 6.8 100 1-101 446-555 (752)
20 PF00199 Catalase: Catalase; 99.6 1.7E-15 3.6E-20 136.6 4.5 66 76-142 318-383 (384)
21 PF06628 Catalase-rel: Catalas 99.4 2.2E-13 4.7E-18 94.3 1.9 43 162-205 2-45 (68)
22 TIGR03092 SASP_sspI small, aci 45.5 29 0.00064 23.6 3.0 23 175-198 43-65 (65)
23 PF14098 SSPI: Small, acid-sol 42.6 32 0.00069 23.5 2.9 22 175-197 44-65 (65)
24 PF13945 NST1: Salt tolerance 42.1 19 0.00042 29.7 2.1 17 52-69 108-124 (190)
25 PF12630 Pox_polyA_pol_N: Poxv 38.5 31 0.00067 25.8 2.5 23 73-95 56-78 (108)
26 PF06945 DUF1289: Protein of u 35.2 50 0.0011 21.1 2.9 23 175-198 28-50 (51)
27 PRK02955 small acid-soluble sp 33.9 57 0.0012 22.4 3.0 23 175-198 46-68 (68)
28 PHA03155 hypothetical protein; 30.0 59 0.0013 24.6 2.8 37 58-94 41-78 (115)
29 PF09720 Unstab_antitox: Putat 29.9 72 0.0016 20.2 3.0 21 181-201 2-22 (54)
30 PF08649 DASH_Dad1: DASH compl 29.2 42 0.00091 22.3 1.7 18 183-200 4-21 (58)
31 PF13945 NST1: Salt tolerance 29.2 45 0.00097 27.5 2.3 19 172-191 106-124 (190)
32 PF05812 Herpes_BLRF2: Herpesv 26.9 65 0.0014 24.6 2.6 36 58-93 40-76 (118)
33 TIGR00695 uxuA mannonate dehyd 24.7 1.2E+02 0.0026 27.8 4.5 27 50-77 157-183 (394)
34 PF10410 DnaB_bind: DnaB-helic 22.9 80 0.0017 19.9 2.2 20 183-202 18-37 (59)
35 PF09011 HMG_box_2: HMG-box do 21.8 79 0.0017 21.2 2.1 24 168-192 34-57 (73)
36 smart00398 HMG high mobility g 21.2 92 0.002 19.9 2.3 20 50-70 35-54 (70)
37 PRK02220 4-oxalocrotonate taut 20.8 84 0.0018 20.0 2.0 20 181-200 12-31 (61)
38 TIGR00013 taut 4-oxalocrotonat 20.4 91 0.002 19.9 2.1 20 181-200 12-31 (63)
39 PRK10455 periplasmic protein; 20.4 1.3E+02 0.0028 24.0 3.4 26 175-201 125-150 (161)
40 cd00491 4Oxalocrotonate_Tautom 20.3 88 0.0019 19.5 2.0 19 182-200 12-30 (58)
41 PF12125 Beta-TrCP_D: D domain 20.2 1.5E+02 0.0033 18.2 2.8 21 179-199 5-25 (40)
No 1
>KOG0047|consensus
Probab=100.00 E-value=3.1e-35 Score=259.15 Aligned_cols=133 Identities=53% Similarity=0.887 Sum_probs=121.3
Q ss_pred hccccchHHHHHHHHhhhhhhcccccccCCCcccCCCcccccCCcccCCCccc-cCCCCCCcccCCCCCCCCCCCC-CCC
Q psy8829 73 SVLKLAAPFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAI-DNQNGAPNYYPNSFKGPEPTPR-GAW 150 (205)
Q Consensus 73 ~~L~~~d~~Iq~R~~sy~d~~~~~LG~n~~~~pvN~P~~~~~~~~~rDG~m~~-~n~~~~~nY~pn~~~~~~~~~~-~~~ 150 (205)
|...++|++||.|+|+|.|++++|||+||.|||||||+...++|+||||+|++ +|+|++|||+||++.+++..+. +.+
T Consensus 339 GIe~S~Dk~LQ~RlFSY~DthRHRLGpNy~QlPVNcPy~~~~~n~qrDG~Mn~~~nqg~~pNYfpn~~~~~~~~~~~~~~ 418 (505)
T KOG0047|consen 339 GIEPSPDKMLQGRLFSYPDTHRHRLGPNYLQLPVNCPYRVRAHNFQRDGPMNVNDNQGGAPNYFPNSFSGPRQQPDPVLE 418 (505)
T ss_pred CcccCCchhheeeeeccCcccccccCCCeeecccCCCccccccccccCCceeeccCCCCCCCcCcccCCccccCCccccC
Confidence 33446899999999999999999999999999999999434899999999999 9999999999999998888774 667
Q ss_pred CCceeecceeecccCCCCCccchHHHHHhcCCHHHHHHHHHHHHHHhccCCcccC
Q psy8829 151 STYNATGDVKRYKTEDEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAAPFIQ 205 (205)
Q Consensus 151 ~~~~~~g~~~~~~~~~~~df~Q~~~~~~~~~~~~~~~~l~~n~~~~l~~~~~~i~ 205 (205)
+...++|.+.++.+.+++||+|||+||++++++.+|+|||.||++||+++.++||
T Consensus 419 ~~~~~~G~~yr~~~~~d~nf~Qpr~fy~~vl~~~q~kr~v~n~~~hl~~~~~~iq 473 (505)
T KOG0047|consen 419 HTEVASGDVYRYEIGDDNNFEQPRAFYEKVLDKEQQKRLVQNIAGHLSEARDFIQ 473 (505)
T ss_pred CceeeecceEEeeccCcccccchHHHHHHHhcHHHHHHHHHHHHHHhhcchHHHH
Confidence 7788999999998888999999999999999999999999999999999987764
No 2
>cd08156 catalase_clade_3 Clade 3 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 3 catalases are the most abundant subfamily and are found in all three kingdoms of life; they have a relatively small subunit size of 43 to 75 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. Clade 3 catalases also bind NADPH as a second redox-active cofactor. They form tetramers, and in eukaryotic cells, catalases are located in peroxisomes.
Probab=100.00 E-value=1.6e-34 Score=261.00 Aligned_cols=133 Identities=43% Similarity=0.705 Sum_probs=120.7
Q ss_pred hhhccc-cchHHHHHHHHhhhhhhcccccccCCCcccCCCcccccCCcccCCCccc-cCCCCCCcccCCCCCCCCCCCCC
Q psy8829 71 IASVLK-LAAPFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAI-DNQNGAPNYYPNSFKGPEPTPRG 148 (205)
Q Consensus 71 ia~~L~-~~d~~Iq~R~~sy~d~~~~~LG~n~~~~pvN~P~~~~~~~~~rDG~m~~-~n~~~~~nY~pn~~~~~~~~~~~ 148 (205)
++..+. +.|++||.|+|+|.+++++|||+||.|||||||+|+ ++||||||+|++ +|.++.|||+|||++++...+.+
T Consensus 272 lvpGI~~S~Dp~Lq~R~faY~dt~~~Rlg~N~~qlPvN~p~~~-~~n~~rdG~m~~~~~~~~~~nY~pns~~~~~~~~~~ 350 (429)
T cd08156 272 LVPGIGFSPDKMLQGRLFSYADAHRYRLGVNYHQLPVNRPKCP-VNNYQRDGAMRVDGNGGGAPNYEPNSFGGPPEDPEY 350 (429)
T ss_pred CCCCccCCCCccccccccccHhhhhcCCCCCHhhCCCCCCCCC-CCCcCcCCCccccCCCCCCCcccCCCCCCCccCCCc
Confidence 333343 579999999999999999999999999999999997 999999999999 78898999999999998877777
Q ss_pred CCCCceeecceeecccC-CCCCccchHHHHHhcCCHHHHHHHHHHHHHHhccCCcccC
Q psy8829 149 AWSTYNATGDVKRYKTE-DEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAAPFIQ 205 (205)
Q Consensus 149 ~~~~~~~~g~~~~~~~~-~~~df~Q~~~~~~~~~~~~~~~~l~~n~~~~l~~~~~~i~ 205 (205)
.+++..++|.+.++.+. ++|||+|||+|| ++|+++||+|||+||+++|++|+++||
T Consensus 351 ~~~~~~~~g~~~r~~~~~~~d~f~Q~~~~~-~~~~~~~q~~li~n~a~~l~~v~~~i~ 407 (429)
T cd08156 351 AEPPLPVSGDADRYNYRDDDDDYTQAGDLY-RLVSEDERERLVENIAGHLKGAPEFIQ 407 (429)
T ss_pred CCCCceEeeeEEEccccCccchhhhhHHHH-hcCCHHHHHHHHHHHHHHHhCCCHHHH
Confidence 78888999999999876 689999999999 689999999999999999999987764
No 3
>cd08154 catalase_clade_1 Clade 1 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 1 catalases are found in bacteria, algae, and plants; they have a relatively small subunit size of 55 to 69 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. They appear to form tetramers. In eukaryotic cells, catalases are located in peroxisomes.
Probab=100.00 E-value=7e-34 Score=258.63 Aligned_cols=134 Identities=27% Similarity=0.440 Sum_probs=122.2
Q ss_pred hhhhccc-cchHHHHHHHHhhhhhhcccccccCCCcccCCCcccccCCcccCCCccccCCCCCCcccCCCCCCCCCCCCC
Q psy8829 70 NIASVLK-LAAPFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRG 148 (205)
Q Consensus 70 Nia~~L~-~~d~~Iq~R~~sy~d~~~~~LG~n~~~~pvN~P~~~~~~~~~rDG~m~~~n~~~~~nY~pn~~~~~~~~~~~ 148 (205)
|++..+. +.|++||.|+++|.+++++|||+||.|||||||+|+ ++||||||+|++.+.++.|||+|||++++...+.+
T Consensus 313 ~lvpGI~~S~DpmLq~R~faY~ds~r~Rlg~N~~qlPvN~p~~~-~~~~~rdG~m~~~~~~~~~nY~pns~~~~~~~~~~ 391 (469)
T cd08154 313 NLVPGIEPSDDKMLQGRLFSYSDTQRYRLGPNYLQLPINAPKAA-VHNNQRDGQMNYGHDTSDVNYEPSRLDGLPEAPKY 391 (469)
T ss_pred CCCCCcCCCCCcccccccccchhHhhccCCCChhhCCCCCCCCC-CCCCCcCCCccccCCCCCCcccCCCCCCCccCCCc
Confidence 4444444 579999999999999999999999999999999997 99999999999977889999999999998888888
Q ss_pred CCCCceeecceeecccCCCCCccchHHHHHhcCCHHHHHHHHHHHHHHhccCCcccC
Q psy8829 149 AWSTYNATGDVKRYKTEDEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAAPFIQ 205 (205)
Q Consensus 149 ~~~~~~~~g~~~~~~~~~~~df~Q~~~~~~~~~~~~~~~~l~~n~~~~l~~~~~~i~ 205 (205)
.+++..++|.+.++.+.++|||+|||+|| ++|++.||+|||+||+++|++|+++||
T Consensus 392 ~~~~~~~~g~~~~~~~~~~~~~~Q~~~~~-~~~~~~~~~~l~~n~~~~l~~~~~~i~ 447 (469)
T cd08154 392 PYSQPPLSGTTQQAPIAKTNNFKQAGERY-RSFSEEEQENLIKNLVVDLSDVNEEIK 447 (469)
T ss_pred CCCCeeEeeeEEeccCCCCCcccCcHHHH-HhCCHHHHHHHHHHHHHHHhCCCHHHH
Confidence 88888999999998877789999999999 699999999999999999999987764
No 4
>cd08155 catalase_clade_2 Clade 2 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 2 catalases are mostly found in bacteria and fungi; they have a large subunit size of 75 to 84 kDa, and bind a heme d group buried deep inside the structure. They appear to form tetramers. In eukaryotic cells, catalases are located in peroxisomes.
Probab=99.97 E-value=6.4e-33 Score=251.07 Aligned_cols=134 Identities=32% Similarity=0.578 Sum_probs=114.7
Q ss_pred hhhhcc-ccchHHHHHHHHhhhhhhcccc-cccCCCcccCCCcccccCCcccCCCccccCCCCCCcccCCCCCCCCC--C
Q psy8829 70 NIASVL-KLAAPFIQGRLHSYIDTHIHRL-GANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKGPEP--T 145 (205)
Q Consensus 70 Nia~~L-~~~d~~Iq~R~~sy~d~~~~~L-G~n~~~~pvN~P~~~~~~~~~rDG~m~~~n~~~~~nY~pn~~~~~~~--~ 145 (205)
|++..+ .+.|++||.|+|+|.+++++|| |+||.|||||||+|+ |+||+|||+|++++.++.|||+|||+++... .
T Consensus 278 ~lvpGI~~S~DpmLq~R~faY~ds~r~RlgG~N~~qlPvN~P~~~-v~n~~rDG~m~~~~~~~~~nY~Pns~~~~~~~~~ 356 (443)
T cd08155 278 NVVPGIDFSNDPLLQGRLFSYLDTQLSRLGGPNFHELPINRPVCP-VHNNQRDGHMRMTINKGRVNYFPNSLGAGPPRAA 356 (443)
T ss_pred CCCCCccCCCCcccccccccchHhhhccCCCCChhhCccccccCC-cCCCCcCCCccccCCCCCCcccCCCCCCCCcccc
Confidence 334444 3689999999999999999999 799999999999997 9999999999996555699999999988432 2
Q ss_pred C----CCCCCCceeecceeecccCC-CCCccchHHHHHhcCCHHHHHHHHHHHHHHhccCC-cccC
Q psy8829 146 P----RGAWSTYNATGDVKRYKTED-EDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAA-PFIQ 205 (205)
Q Consensus 146 ~----~~~~~~~~~~g~~~~~~~~~-~~df~Q~~~~~~~~~~~~~~~~l~~n~~~~l~~~~-~~i~ 205 (205)
. .+..++..++|.+.++.+.+ +|||+|||+|| ++|+++||+|||+||+++|++|+ ++||
T Consensus 357 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Q~~~ly-~~~~~~e~~~lv~n~~~~l~~~~~~~i~ 421 (443)
T cd08155 357 SPAEGGFVHYPEKVEGPKIRIRSESFADHYSQARLFW-NSMSPVEKEHIISAFTFELSKVETPEIR 421 (443)
T ss_pred ccccccccCCccceecceEecccCCCCccccccHHHH-hcCCHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 2 34567778999999988765 79999999999 69999999999999999999998 4564
No 5
>PLN02609 catalase
Probab=99.97 E-value=1.1e-32 Score=251.45 Aligned_cols=133 Identities=24% Similarity=0.363 Sum_probs=117.6
Q ss_pred hhhhccc-cchHHHHHHHHhhhhhhcccccccCCCcccCCCcccccCCcccCCCccccCCCCCCcccCCCCCCCCCCCCC
Q psy8829 70 NIASVLK-LAAPFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRG 148 (205)
Q Consensus 70 Nia~~L~-~~d~~Iq~R~~sy~d~~~~~LG~n~~~~pvN~P~~~~~~~~~rDG~m~~~n~~~~~nY~pn~~~~~~~~~~~ 148 (205)
|++..+. +.|++||.|+|+|.+++++|||+||.|||||||+|+ ++||||||+|++++.++.|||+|||+++++..+.+
T Consensus 328 ~lvpGI~~S~DpmLq~R~faY~ds~~~Rlg~N~~qlPvN~p~~~-~~n~~rdG~m~~~~~~~~~nY~pn~~~~~~~~~~~ 406 (492)
T PLN02609 328 IVVPGIYYSDDKLLQTRIFAYADTQRHRLGPNYLQLPVNAPKCA-HHNNHHEGFMNFMHRDEEVNYFPSRFDPVRHAERV 406 (492)
T ss_pred cCCCCccCCCCcccccccccchhHhhccCCCChhhCcccCCCCC-cCCCCcCCCccccCCCCCCCccCCCCCCCccCCCc
Confidence 3444443 689999999999999999999999999999999997 99999999999955599999999999987776666
Q ss_pred CCCCceeecceeecccCCCCCccchHHHHHhcCCHHHHHHHHHHHHHHhccCCccc
Q psy8829 149 AWSTYNATGDVKRYKTEDEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAAPFI 204 (205)
Q Consensus 149 ~~~~~~~~g~~~~~~~~~~~df~Q~~~~~~~~~~~~~~~~l~~n~~~~l~~~~~~i 204 (205)
..++..+.|.+.++.+..+|||+|||+|| ++|+++||+|||+||+++|++|+..|
T Consensus 407 ~~~~~~~~g~~~~~~~~~~~~~~Q~~~~~-~~~~~~~~~~lv~n~~~~l~~~~~~~ 461 (492)
T PLN02609 407 PIPHPPLSGRREKCKIEKENNFKQPGERY-RSWSPDRQERFIKRWVDALSDPRVTH 461 (492)
T ss_pred CCCCceeccceEEccCCCCCcccchhHHH-HhCCHHHHHHHHHHHHHHhhcCchhH
Confidence 67778889999888776789999999999 69999999999999999999997543
No 6
>COG0753 KatE Catalase [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.4e-32 Score=243.64 Aligned_cols=138 Identities=38% Similarity=0.542 Sum_probs=116.8
Q ss_pred HHHHhhhhccc-cchHHHHHHHHhhhhhhcccccccCCCcccCCCcccccCCcccCCCccccCCCCCCcccCCCCCCCCC
Q psy8829 66 RMTTNIASVLK-LAAPFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKGPEP 144 (205)
Q Consensus 66 ~Lv~Nia~~L~-~~d~~Iq~R~~sy~d~~~~~LG~n~~~~pvN~P~~~~~~~~~rDG~m~~~n~~~~~nY~pn~~~~~~~ 144 (205)
-.-.||+..+. +.|++||.|+|+|.|++++|||+||.|||||||+|+ |++|||||+|++++..+.+||+||+++..+.
T Consensus 323 F~p~nlVPGi~fS~D~lLQgRlFsY~DtqryRlG~N~~qlPvN~P~~p-~~~~qrDG~m~~~~~~g~~~y~Pn~~~~~~~ 401 (496)
T COG0753 323 FAPGNLVPGIDFSPDPLLQGRLFSYGDTQRYRLGPNYHQIPVNRPKCP-VHNNQRDGQMRMGINTGPANYEPNSFGDNPE 401 (496)
T ss_pred cccccCCCCCCCCCChhhhhccccchhhhHhhcCCCcccccCCCCCCc-ccccccCCccccccCCCCcccCccccccCcc
Confidence 34567887776 589999999999999999999999999999999997 9999999999994444449999999975222
Q ss_pred ---CCCCCCCCceeecceeeccc-CCCCCccchHHHHHhcCCHHHHHHHHHHHHHHhccCCc-ccC
Q psy8829 145 ---TPRGAWSTYNATGDVKRYKT-EDEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAAP-FIQ 205 (205)
Q Consensus 145 ---~~~~~~~~~~~~g~~~~~~~-~~~~df~Q~~~~~~~~~~~~~~~~l~~n~~~~l~~~~~-~i~ 205 (205)
.+.+..++..+.|.+.+... ..+|||+|||+|| ++|++.||++|++||+++|++|.+ +|+
T Consensus 402 ~~~~~~~~~~~~~~~g~~~~~~~~~~~d~f~Q~~~~~-~~~~~~ek~~l~~n~~~~l~~v~~~~i~ 466 (496)
T COG0753 402 APEQPGFVEPPERVEGDKQRRRAISDDDYFSQPRALY-RSLSDAEKQHLVDNIAFELSKVTDPEIK 466 (496)
T ss_pred ccccccccCCceeeccchhhhccccccccchhHHHHH-HhCCHHHHHHHHHHHHHHhhcCCcHHHH
Confidence 34466778889999986544 4689999999999 699999999999999999999875 553
No 7
>cd08157 catalase_fungal Fungal catalases similar to yeast catalases A and T. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. This family of fungal catalases has a relatively small subunit size, and binds a protoheme IX (heme b) group buried deep inside the structure. Fungal catalases also bind NADPH as a second redox-active cofactor. They form tetramers; in eukaryotic cells, catalases are typically located in peroxisomes. Saccharomyces cerevisiae catalase T is found in the cytoplasm, though.
Probab=99.97 E-value=1.3e-31 Score=244.36 Aligned_cols=129 Identities=40% Similarity=0.609 Sum_probs=112.4
Q ss_pred ccchHHHHHHHHhhhhhhcccccccCCCcccCCCc-ccccCC-cccCCCccc-cCCCCCCcccCCCCCCCCC--CCCCCC
Q psy8829 76 KLAAPFIQGRLHSYIDTHIHRLGANFNQIPVNCPY-RVRVAN-YQRDAPMAI-DNQNGAPNYYPNSFKGPEP--TPRGAW 150 (205)
Q Consensus 76 ~~~d~~Iq~R~~sy~d~~~~~LG~n~~~~pvN~P~-~~~~~~-~~rDG~m~~-~n~~~~~nY~pn~~~~~~~--~~~~~~ 150 (205)
.+.|++||.|+++|.+.+++|||.|+.|||||||+ |+ ++| |||||+|++ +|.++.|||.||++.+... ......
T Consensus 294 ps~DpiLq~R~~aY~ds~~~R~g~N~~qlPvN~p~~~~-~~~~~~rdG~m~~~~~~~~~~nY~p~~~~~~~~~~~~~~~~ 372 (451)
T cd08157 294 PSADPVLQARLFSYPDAHRHRLGPNYQQLPVNRPKTSP-VYNPYQRDGPMSVNGNYGGDPNYVSSILPPTYFKKRVDADG 372 (451)
T ss_pred CCCCchhcccccchHHHHHhccCCChhhCCCCCCCcCC-CCCCcCcCCCCcccCCCCCCCCcCCCCCCCCCcccccccCC
Confidence 35689999999999999999999999999999999 77 555 599999999 7889999999999986333 233445
Q ss_pred CCceeecceeecccC-CCCCccchHHHHHhcCCHHHHHHHHHHHHHHhccCCcccC
Q psy8829 151 STYNATGDVKRYKTE-DEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAAPFIQ 205 (205)
Q Consensus 151 ~~~~~~g~~~~~~~~-~~~df~Q~~~~~~~~~~~~~~~~l~~n~~~~l~~~~~~i~ 205 (205)
++..++|.+.++.+. ++|||+|||+||+++|++.||+|||+||+++|++|+++||
T Consensus 373 ~~~~~~g~~~~~~~~~~~d~~~Q~~~~y~~~~~~~~k~~li~n~~~~l~~~~~~i~ 428 (451)
T cd08157 373 HHENWVGEVVAFLTEITDEDFVQPRALWEVVGKPGQQERFVKNVAGHLSGAPPEIR 428 (451)
T ss_pred CCceeeeeeEeecccccccchhccHHHHHhhCCHHHHHHHHHHHHHHHhCCCHHHH
Confidence 667899999998875 6799999999997788999999999999999999987774
No 8
>cd00328 catalase Catalase heme-binding enzyme. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Most catalases exist as tetramers of 65KD subunits containing a protoheme IX group buried deep inside the structure. In eukaryotic cells, catalases are located in peroxisomes.
Probab=99.97 E-value=9.7e-32 Score=243.41 Aligned_cols=134 Identities=35% Similarity=0.559 Sum_probs=112.9
Q ss_pred hhhhccc-cchHHHHHHHHhhhhhhcccccccCCCcccCCCcccccCCcccCCCccccCCCCCCcccCCCCCCCCCCCCC
Q psy8829 70 NIASVLK-LAAPFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRG 148 (205)
Q Consensus 70 Nia~~L~-~~d~~Iq~R~~sy~d~~~~~LG~n~~~~pvN~P~~~~~~~~~rDG~m~~~n~~~~~nY~pn~~~~~~~~~~~ 148 (205)
|++..+. +.|++||.|+++|.+++++|||+||.|||||||+|+ ++||||||+|++.+..+.|||+|||++++.+....
T Consensus 271 ~lvpGI~~S~DplLq~R~faY~ds~~~R~g~N~~qlpvN~p~~~-~~n~~rdG~m~~~~~~~~~nY~pns~~~~~~~~~~ 349 (433)
T cd00328 271 HIVPGVEFSEDPLLQGRLFSYADTQLYRLGPNFQQLPVNRPYAP-VHNNQRDGAGNMNDNTGVPNYEPNAKDVRYPAQGA 349 (433)
T ss_pred CCCCCccCCCCcccccccccchhhhhcCCCCCHhhCcccCCCCC-cCCCCcCCCccccCCCCCCCccCCCCCCCCCCccc
Confidence 3444444 679999999999999999999999999999999997 99999999999944444999999999987665443
Q ss_pred CC----CCceeecceeecccC-CCCCccchHHHHHhcCCHHHHHHHHHHHHHHhccC-CcccC
Q psy8829 149 AW----STYNATGDVKRYKTE-DEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLA-APFIQ 205 (205)
Q Consensus 149 ~~----~~~~~~g~~~~~~~~-~~~df~Q~~~~~~~~~~~~~~~~l~~n~~~~l~~~-~~~i~ 205 (205)
.+ .+..+.|.+.++.+. .+|||+|||+|| ++|+++||+|||+||+++|++| +++||
T Consensus 350 ~~~~~~~~~~~~g~~~~~~~~~~~d~~~Q~~~~~-~~~~~~ek~~lv~n~~~~l~~v~~~~i~ 411 (433)
T cd00328 350 PKFDRGHFSHWKSGVNREASTTNDDNFTQARLFY-RSLTPGQQKRLVDAFRFELADAVSPQIQ 411 (433)
T ss_pred ccccCCCceeeecceEEecccCCcchhhhhHHHH-hcCCHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 32 345678888888755 579999999999 6999999999999999999999 66664
No 9
>PRK11249 katE hydroperoxidase II; Provisional
Probab=99.96 E-value=1.3e-29 Score=241.25 Aligned_cols=134 Identities=34% Similarity=0.572 Sum_probs=113.5
Q ss_pred hhhhccc-cchHHHHHHHHhhhhhhccccc-ccCCCcccCCCcccccCCcccCCCccccCCCCCCcccCCCCCC--CCCC
Q psy8829 70 NIASVLK-LAAPFIQGRLHSYIDTHIHRLG-ANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPT 145 (205)
Q Consensus 70 Nia~~L~-~~d~~Iq~R~~sy~d~~~~~LG-~n~~~~pvN~P~~~~~~~~~rDG~m~~~n~~~~~nY~pn~~~~--~~~~ 145 (205)
|++..+. +.|++||.|+|+|.+++.+||| +||.|||||||+|+ |+||||||+|++.+..+.|||+|||+++ +...
T Consensus 392 ~lvpGI~~S~DplLq~R~fsY~dtq~~Rlgg~N~~qlpvN~p~~~-~~n~~rdG~~~~~~~~g~~~Y~pns~~~~~~~~~ 470 (752)
T PRK11249 392 HIVPGIDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCP-YHNFQRDGMHRMTIDTGPANYEPNSINGNWPRET 470 (752)
T ss_pred CCCCCccCCCCcccccccccchHHhhccCCCCchhhcccccccCC-cCCCCcCCCCcccCCCCCCcccCCCCCCCCcccC
Confidence 4444444 6799999999999999999997 99999999999998 9999999999996555699999999965 4333
Q ss_pred CC------CCCCCceeecceeecccCC-CCCccchHHHHHhcCCHHHHHHHHHHHHHHhccCC-cccC
Q psy8829 146 PR------GAWSTYNATGDVKRYKTED-EDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAA-PFIQ 205 (205)
Q Consensus 146 ~~------~~~~~~~~~g~~~~~~~~~-~~df~Q~~~~~~~~~~~~~~~~l~~n~~~~l~~~~-~~i~ 205 (205)
+. +...+..++|.+.|+.+.. +|||+|||+|| ++|++.||+|||+||+++|++|. ++|+
T Consensus 471 ~~~~~~~~~~~~~~~~~g~~~r~~~~~~~d~~~Q~~~~~-~~~~~~e~~~~~~~~~~~l~~v~~~~i~ 537 (752)
T PRK11249 471 PPAPKRGGFESYQERVEGNKVRERSPSFGDYYSQPRLFW-LSQTPIEQRHIIDAFSFELGKVVRPYIR 537 (752)
T ss_pred cccccccCccCCCceeeccEEeccCCCCCccccccHHHH-hcCCHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 32 3356678899999888764 79999999999 69999999999999999999997 4453
No 10
>cd08156 catalase_clade_3 Clade 3 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 3 catalases are the most abundant subfamily and are found in all three kingdoms of life; they have a relatively small subunit size of 43 to 75 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. Clade 3 catalases also bind NADPH as a second redox-active cofactor. They form tetramers, and in eukaryotic cells, catalases are located in peroxisomes.
Probab=99.82 E-value=9.5e-21 Score=171.64 Aligned_cols=101 Identities=37% Similarity=0.574 Sum_probs=92.3
Q ss_pred Cccc-CCCCCCcccCCCCCCCCCCCCCCCCCcccccceeeccCC-CCCCCcchhhHhhccCCHHHHHHHHHhhhhccccc
Q psy8829 1 MAID-NQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKTE-DEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLA 78 (205)
Q Consensus 1 M~~~-n~g~~pnY~Pns~~~p~~~~~~~~~~~~v~G~~~r~~~~-~~ddF~Qag~lyr~~~~~~er~~Lv~Nia~~L~~~ 78 (205)
|+++ |+|+.|||+|||++++...+.+..++..++|.+.++.+. ++|||+|||+||| +|+++||+|||+||+++|+.+
T Consensus 324 m~~~~~~~~~~nY~pns~~~~~~~~~~~~~~~~~~g~~~r~~~~~~~d~f~Q~~~~~~-~~~~~~q~~li~n~a~~l~~v 402 (429)
T cd08156 324 MRVDGNGGGAPNYEPNSFGGPPEDPEYAEPPLPVSGDADRYNYRDDDDDYTQAGDLYR-LVSEDERERLVENIAGHLKGA 402 (429)
T ss_pred ccccCCCCCCCcccCCCCCCCccCCCcCCCCceEeeeEEEccccCccchhhhhHHHHh-cCCHHHHHHHHHHHHHHHhCC
Confidence 7776 889999999999999877777777777889999999886 8899999999998 899999999999999999999
Q ss_pred hHHHHHHHHhhhhhhcccccccCC
Q psy8829 79 APFIQGRLHSYIDTHIHRLGANFN 102 (205)
Q Consensus 79 d~~Iq~R~~sy~d~~~~~LG~n~~ 102 (205)
..+||.|+++||.++|++||.++.
T Consensus 403 ~~~i~~r~~~~~~~~d~~lg~~va 426 (429)
T cd08156 403 PEFIQERQVAHFYKADPDYGERVA 426 (429)
T ss_pred CHHHHHHHHHHHHhhCHHHHHHHH
Confidence 889999999999999999998764
No 11
>cd08154 catalase_clade_1 Clade 1 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 1 catalases are found in bacteria, algae, and plants; they have a relatively small subunit size of 55 to 69 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. They appear to form tetramers. In eukaryotic cells, catalases are located in peroxisomes.
Probab=99.81 E-value=2.5e-20 Score=170.10 Aligned_cols=101 Identities=18% Similarity=0.285 Sum_probs=92.4
Q ss_pred CcccCCCCCCcccCCCCCCCCCCCCCCCCCcccccceeeccCCCCCCCcchhhHhhccCCHHHHHHHHHhhhhccccchH
Q psy8829 1 MAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAAP 80 (205)
Q Consensus 1 M~~~n~g~~pnY~Pns~~~p~~~~~~~~~~~~v~G~~~r~~~~~~ddF~Qag~lyr~~~~~~er~~Lv~Nia~~L~~~d~ 80 (205)
|+++++++.|||+|||++++...+.+..++..++|.+.++.+.++|||+|||+||+ +|+++||+|||+||+++|+.+..
T Consensus 366 m~~~~~~~~~nY~pns~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Q~~~~~~-~~~~~~~~~l~~n~~~~l~~~~~ 444 (469)
T cd08154 366 MNYGHDTSDVNYEPSRLDGLPEAPKYPYSQPPLSGTTQQAPIAKTNNFKQAGERYR-SFSEEEQENLIKNLVVDLSDVNE 444 (469)
T ss_pred ccccCCCCCCcccCCCCCCCccCCCcCCCCeeEeeeEEeccCCCCCcccCcHHHHH-hCCHHHHHHHHHHHHHHHhCCCH
Confidence 77777889999999999988877777777778899999988778899999999998 99999999999999999999999
Q ss_pred HHHHHHHhhhhhhcccccccCC
Q psy8829 81 FIQGRLHSYIDTHIHRLGANFN 102 (205)
Q Consensus 81 ~Iq~R~~sy~d~~~~~LG~n~~ 102 (205)
+||.|+++||.++|.+||..+.
T Consensus 445 ~i~~r~~~~~~~~d~~~~~~v~ 466 (469)
T cd08154 445 EIKLRMLSYFSQADPDYGERVA 466 (469)
T ss_pred HHHHHHHHHHHHhCHHHHHHHH
Confidence 9999999999999999998753
No 12
>cd08155 catalase_clade_2 Clade 2 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 2 catalases are mostly found in bacteria and fungi; they have a large subunit size of 75 to 84 kDa, and bind a heme d group buried deep inside the structure. They appear to form tetramers. In eukaryotic cells, catalases are located in peroxisomes.
Probab=99.78 E-value=1.5e-19 Score=164.17 Aligned_cols=101 Identities=20% Similarity=0.342 Sum_probs=85.5
Q ss_pred CcccCCCCCCcccCCCCCCC--CCCC----CCCCCCcccccceeeccCC-CCCCCcchhhHhhccCCHHHHHHHHHhhhh
Q psy8829 1 MAIDNQNGAPNYYPNSFKGP--EPTP----RGAWSTYNATGDVKRYKTE-DEDNFSQPRILWSNVLDDAARDRMTTNIAS 73 (205)
Q Consensus 1 M~~~n~g~~pnY~Pns~~~p--~~~~----~~~~~~~~v~G~~~r~~~~-~~ddF~Qag~lyr~~~~~~er~~Lv~Nia~ 73 (205)
|++++.++.|||+|||+++. .++. .+...+..++|.+.++.+. ++|||+|||+||+ +|+++||++||+||++
T Consensus 332 m~~~~~~~~~nY~Pns~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Q~~~ly~-~~~~~e~~~lv~n~~~ 410 (443)
T cd08155 332 MRMTINKGRVNYFPNSLGAGPPRAASPAEGGFVHYPEKVEGPKIRIRSESFADHYSQARLFWN-SMSPVEKEHIISAFTF 410 (443)
T ss_pred ccccCCCCCCcccCCCCCCCCccccccccccccCCccceecceEecccCCCCccccccHHHHh-cCCHHHHHHHHHHHHH
Confidence 67765556999999999883 2222 3445666788999998876 4899999999998 9999999999999999
Q ss_pred ccccch-HHHHHHHHhhhhhhcccccccCC
Q psy8829 74 VLKLAA-PFIQGRLHSYIDTHIHRLGANFN 102 (205)
Q Consensus 74 ~L~~~d-~~Iq~R~~sy~d~~~~~LG~n~~ 102 (205)
+|+.+. .+||.|+++||.++|++||..+.
T Consensus 411 ~l~~~~~~~i~~~~~~~f~~~d~~~g~~v~ 440 (443)
T cd08155 411 ELSKVETPEIRERVVDHLANIDEDLAKKVA 440 (443)
T ss_pred HHhCCCcHHHHHHHHHHHHhhCHHHHHHHH
Confidence 999986 78999999999999999998764
No 13
>cd08157 catalase_fungal Fungal catalases similar to yeast catalases A and T. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. This family of fungal catalases has a relatively small subunit size, and binds a protoheme IX (heme b) group buried deep inside the structure. Fungal catalases also bind NADPH as a second redox-active cofactor. They form tetramers; in eukaryotic cells, catalases are typically located in peroxisomes. Saccharomyces cerevisiae catalase T is found in the cytoplasm, though.
Probab=99.77 E-value=3.2e-19 Score=163.10 Aligned_cols=102 Identities=27% Similarity=0.427 Sum_probs=87.2
Q ss_pred Cccc-CCCCCCcccCCCCCCC--CCCCCCCCCCcccccceeeccCC-CCCCCcchhhHhhccCCHHHHHHHHHhhhhccc
Q psy8829 1 MAID-NQNGAPNYYPNSFKGP--EPTPRGAWSTYNATGDVKRYKTE-DEDNFSQPRILWSNVLDDAARDRMTTNIASVLK 76 (205)
Q Consensus 1 M~~~-n~g~~pnY~Pns~~~p--~~~~~~~~~~~~v~G~~~r~~~~-~~ddF~Qag~lyr~~~~~~er~~Lv~Nia~~L~ 76 (205)
|++. |+|+.|||+||++++. ........++..++|.+.++.+. ++|||+|||+||+++|++.||++||+||+++|+
T Consensus 342 m~~~~~~~~~~nY~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~Q~~~~y~~~~~~~~k~~li~n~~~~l~ 421 (451)
T cd08157 342 MSVNGNYGGDPNYVSSILPPTYFKKRVDADGHHENWVGEVVAFLTEITDEDFVQPRALWEVVGKPGQQERFVKNVAGHLS 421 (451)
T ss_pred CcccCCCCCCCCcCCCCCCCCCcccccccCCCCceeeeeeEeecccccccchhccHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 7775 8899999999999863 22333344455678999998875 789999999999877899999999999999999
Q ss_pred cchHHHHHHHHhhhhhhcccccccCC
Q psy8829 77 LAAPFIQGRLHSYIDTHIHRLGANFN 102 (205)
Q Consensus 77 ~~d~~Iq~R~~sy~d~~~~~LG~n~~ 102 (205)
.++++||.|+++||.++|.+||.++.
T Consensus 422 ~~~~~i~~~~~~~~~~~d~~~g~~v~ 447 (451)
T cd08157 422 GAPPEIRKRVYEIFARVNPDLGKRIE 447 (451)
T ss_pred CCCHHHHHHHHHHHHHhCHHHHHHHH
Confidence 99999999999999999999998753
No 14
>PLN02609 catalase
Probab=99.75 E-value=9.2e-19 Score=160.41 Aligned_cols=101 Identities=21% Similarity=0.287 Sum_probs=86.2
Q ss_pred CcccCCCCCCcccCCCCCCCCCCCCCCCCCcccccceeeccCCCCCCCcchhhHhhccCCHHHHHHHHHhhhhccccchH
Q psy8829 1 MAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAAP 80 (205)
Q Consensus 1 M~~~n~g~~pnY~Pns~~~p~~~~~~~~~~~~v~G~~~r~~~~~~ddF~Qag~lyr~~~~~~er~~Lv~Nia~~L~~~d~ 80 (205)
|++++.|+.|||+|||++++...+.+..+...+.|.+.++.+.++|||+|||+||+ +|+++||++||+||+++|+.+..
T Consensus 381 m~~~~~~~~~nY~pn~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Q~~~~~~-~~~~~~~~~lv~n~~~~l~~~~~ 459 (492)
T PLN02609 381 MNFMHRDEEVNYFPSRFDPVRHAERVPIPHPPLSGRREKCKIEKENNFKQPGERYR-SWSPDRQERFIKRWVDALSDPRV 459 (492)
T ss_pred ccccCCCCCCCccCCCCCCCccCCCcCCCCceeccceEEccCCCCCcccchhHHHH-hCCHHHHHHHHHHHHHHhhcCch
Confidence 77764499999999999987666655555566789988887777899999999998 99999999999999999999865
Q ss_pred --HHHHHHHhhhhhhcccccccCC
Q psy8829 81 --FIQGRLHSYIDTHIHRLGANFN 102 (205)
Q Consensus 81 --~Iq~R~~sy~d~~~~~LG~n~~ 102 (205)
.++.|+++||.++|.+||.++.
T Consensus 460 ~~~~r~~~~~~~~~~d~~lg~~v~ 483 (492)
T PLN02609 460 THEIRSIWISYWSQCDKSLGQKLA 483 (492)
T ss_pred hHHHHHHHHHHHHHhCHHHHHHHH
Confidence 4677779999999999998763
No 15
>KOG0047|consensus
Probab=99.75 E-value=1.4e-18 Score=154.00 Aligned_cols=101 Identities=45% Similarity=0.718 Sum_probs=90.5
Q ss_pred Ccc-cCCCCCCcccCCCCCCCCCCCC-CCCCCcccccceeeccCCCCCCCcchhhHhhccCCHHHHHHHHHhhhhccccc
Q psy8829 1 MAI-DNQNGAPNYYPNSFKGPEPTPR-GAWSTYNATGDVKRYKTEDEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLA 78 (205)
Q Consensus 1 M~~-~n~g~~pnY~Pns~~~p~~~~~-~~~~~~~v~G~~~r~~~~~~ddF~Qag~lyr~~~~~~er~~Lv~Nia~~L~~~ 78 (205)
|++ +|+|+.|||.|||+.++...++ ...+....+|.+.++.+.+|+||+|||+||++++++++|++||.||+++|+.+
T Consensus 389 Mn~~~nqg~~pNYfpn~~~~~~~~~~~~~~~~~~~~G~~yr~~~~~d~nf~Qpr~fy~~vl~~~q~kr~v~n~~~hl~~~ 468 (505)
T KOG0047|consen 389 MNVNDNQGGAPNYFPNSFSGPRQQPDPVLEHTEVASGDVYRYEIGDDNNFEQPRAFYEKVLDKEQQKRLVQNIAGHLSEA 468 (505)
T ss_pred eeeccCCCCCCCcCcccCCccccCCccccCCceeeecceEEeeccCcccccchHHHHHHHhcHHHHHHHHHHHHHHhhcc
Confidence 788 5999999999999988877664 55555566898888888889999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhhhcccccccC
Q psy8829 79 APFIQGRLHSYIDTHIHRLGANF 101 (205)
Q Consensus 79 d~~Iq~R~~sy~d~~~~~LG~n~ 101 (205)
...||+|++.||.+++++||..+
T Consensus 469 ~~~iq~r~~~~ft~v~~dlG~~l 491 (505)
T KOG0047|consen 469 RDFIQKRAVKYFTQVHKDLGRAL 491 (505)
T ss_pred hHHHHHHHHHHHHhhchHHHHHH
Confidence 88899999999999999999665
No 16
>cd00328 catalase Catalase heme-binding enzyme. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Most catalases exist as tetramers of 65KD subunits containing a protoheme IX group buried deep inside the structure. In eukaryotic cells, catalases are located in peroxisomes.
Probab=99.73 E-value=2.7e-18 Score=155.98 Aligned_cols=101 Identities=22% Similarity=0.303 Sum_probs=83.5
Q ss_pred CcccCCCCCCcccCCCCCCCCCCCCCCC----CCcccccceeeccCC-CCCCCcchhhHhhccCCHHHHHHHHHhhhhcc
Q psy8829 1 MAIDNQNGAPNYYPNSFKGPEPTPRGAW----STYNATGDVKRYKTE-DEDNFSQPRILWSNVLDDAARDRMTTNIASVL 75 (205)
Q Consensus 1 M~~~n~g~~pnY~Pns~~~p~~~~~~~~----~~~~v~G~~~r~~~~-~~ddF~Qag~lyr~~~~~~er~~Lv~Nia~~L 75 (205)
|++++..+.|||+|||++++........ ..+.+.|.+.++.+. ++|||+|||+||+ +|+++||+|||+||+++|
T Consensus 324 m~~~~~~~~~nY~pns~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~Q~~~~~~-~~~~~ek~~lv~n~~~~l 402 (433)
T cd00328 324 GNMNDNTGVPNYEPNAKDVRYPAQGAPKFDRGHFSHWKSGVNREASTTNDDNFTQARLFYR-SLTPGQQKRLVDAFRFEL 402 (433)
T ss_pred ccccCCCCCCCccCCCCCCCCCCcccccccCCCceeeecceEEecccCCcchhhhhHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 6776444499999999998655433221 244557888887754 7899999999998 999999999999999999
Q ss_pred ccc-hHHHHHHHHhhhhhhcccccccCC
Q psy8829 76 KLA-APFIQGRLHSYIDTHIHRLGANFN 102 (205)
Q Consensus 76 ~~~-d~~Iq~R~~sy~d~~~~~LG~n~~ 102 (205)
+.+ ++.||.|++.||.++|++||..+.
T Consensus 403 ~~v~~~~i~~r~~~~f~~~d~~~g~~va 430 (433)
T cd00328 403 ADAVSPQIQQRVLDQFAKVDAAAAKRVA 430 (433)
T ss_pred hCCCCHHHHHHHHHHHHHhCHHHHHHHH
Confidence 998 889999999999999999998764
No 17
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=99.70 E-value=3.5e-18 Score=118.29 Aligned_cols=61 Identities=38% Similarity=0.549 Sum_probs=54.8
Q ss_pred ccCCCCCCCcchhhHhhccCCHHHHHHHHHhhhhccccchHH-HHHHHHhhhhhhcccccccC
Q psy8829 40 YKTEDEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAAPF-IQGRLHSYIDTHIHRLGANF 101 (205)
Q Consensus 40 ~~~~~~ddF~Qag~lyr~~~~~~er~~Lv~Nia~~L~~~d~~-Iq~R~~sy~d~~~~~LG~n~ 101 (205)
+.++++|||+|||.||+ +|+++||++||+||+++|+.++.. ||.|++.||.+++++||..+
T Consensus 2 ~~~~~~ddf~Qa~~ly~-~l~~~er~~lv~nia~~l~~v~~~~i~~r~l~~f~~vd~~lg~~v 63 (68)
T PF06628_consen 2 YRSEKDDDFSQARDLYR-VLSDEERERLVENIAGHLSGVSDEEIQERVLAYFYKVDPDLGQRV 63 (68)
T ss_dssp HGHGGGCSSHHHHHHHH-HSSHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred CCCCCCcchhhHHHHHH-HCCHHHHHHHHHHHHHHHccCChhhHHHHHHHHHHHhCHHHHHHH
Confidence 44556699999999999 999999999999999999998766 99999999999999999865
No 18
>COG0753 KatE Catalase [Inorganic ion transport and metabolism]
Probab=99.68 E-value=3.2e-17 Score=147.60 Aligned_cols=101 Identities=33% Similarity=0.457 Sum_probs=84.0
Q ss_pred CcccCCCCCCcccCCCCCC-C--CCCCCCCCCCcccccceeecc-CCCCCCCcchhhHhhccCCHHHHHHHHHhhhhccc
Q psy8829 1 MAIDNQNGAPNYYPNSFKG-P--EPTPRGAWSTYNATGDVKRYK-TEDEDNFSQPRILWSNVLDDAARDRMTTNIASVLK 76 (205)
Q Consensus 1 M~~~n~g~~pnY~Pns~~~-p--~~~~~~~~~~~~v~G~~~r~~-~~~~ddF~Qag~lyr~~~~~~er~~Lv~Nia~~L~ 76 (205)
|++.+..|.+||+|||++. + ...+.+.+.+..++|.+.+.. +.++|+|+|||+||+ +|++.||++|++||+++|+
T Consensus 380 m~~~~~~g~~~y~Pn~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~f~Q~~~~~~-~~~~~ek~~l~~n~~~~l~ 458 (496)
T COG0753 380 MRMGINTGPANYEPNSFGDNPEAPEQPGFVEPPERVEGDKQRRRAISDDDYFSQPRALYR-SLSDAEKQHLVDNIAFELS 458 (496)
T ss_pred cccccCCCCcccCccccccCccccccccccCCceeeccchhhhccccccccchhHHHHHH-hCCHHHHHHHHHHHHHHhh
Confidence 6776333349999999974 2 233556677777899988644 468999999999998 9999999999999999998
Q ss_pred cc-hHHHHHHHHhhhhhhcccccccCC
Q psy8829 77 LA-APFIQGRLHSYIDTHIHRLGANFN 102 (205)
Q Consensus 77 ~~-d~~Iq~R~~sy~d~~~~~LG~n~~ 102 (205)
++ ++.|+.|++.||.++|++||..+.
T Consensus 459 ~v~~~~i~~r~~~~f~~~d~~~~~~va 485 (496)
T COG0753 459 KVTDPEIKERVLDHFYKIDPDLGKGVA 485 (496)
T ss_pred cCCcHHHHHHHHHHHHhcCHHHHHHHH
Confidence 85 679999999999999999998763
No 19
>PRK11249 katE hydroperoxidase II; Provisional
Probab=99.66 E-value=8e-17 Score=154.15 Aligned_cols=100 Identities=23% Similarity=0.355 Sum_probs=84.4
Q ss_pred CcccCCCCCCcccCCCCCC--CCCCCC------CCCCCcccccceeeccCC-CCCCCcchhhHhhccCCHHHHHHHHHhh
Q psy8829 1 MAIDNQNGAPNYYPNSFKG--PEPTPR------GAWSTYNATGDVKRYKTE-DEDNFSQPRILWSNVLDDAARDRMTTNI 71 (205)
Q Consensus 1 M~~~n~g~~pnY~Pns~~~--p~~~~~------~~~~~~~v~G~~~r~~~~-~~ddF~Qag~lyr~~~~~~er~~Lv~Ni 71 (205)
|++.+.+|.|||+|||+++ |.+.+. +.+.+..++|.+.|+.++ ++|||+|||+||+ +|++.||+|||+|+
T Consensus 446 ~~~~~~~g~~~Y~pns~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~r~~~~~~~d~~~Q~~~~~~-~~~~~e~~~~~~~~ 524 (752)
T PRK11249 446 HRMTIDTGPANYEPNSINGNWPRETPPAPKRGGFESYQERVEGNKVRERSPSFGDYYSQPRLFWL-SQTPIEQRHIIDAF 524 (752)
T ss_pred CcccCCCCCCcccCCCCCCCCcccCcccccccCccCCCceeeccEEeccCCCCCccccccHHHHh-cCCHHHHHHHHHHH
Confidence 6676555699999999965 444432 234566678999898876 6899999999998 99999999999999
Q ss_pred hhccccch-HHHHHHHHhhhhhhcccccccC
Q psy8829 72 ASVLKLAA-PFIQGRLHSYIDTHIHRLGANF 101 (205)
Q Consensus 72 a~~L~~~d-~~Iq~R~~sy~d~~~~~LG~n~ 101 (205)
+++|+.+. +.||.|++.+|.++|.+||..+
T Consensus 525 ~~~l~~v~~~~i~~r~~~~~~~vd~~l~~~v 555 (752)
T PRK11249 525 SFELGKVVRPYIRERVVDQLAHIDLTLAQAV 555 (752)
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999985 8899999999999999999775
No 20
>PF00199 Catalase: Catalase; InterPro: IPR011614 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. Based on a phylogenetic analysis, catalases can be classified into clade 1, 2 and 3. Clade 1 contains small subunit catalases from plants and a subset of bacteria; clade 2 contains large subunit catalases from fungi and a second subset of bacteria; and clade 3 contains small subunit catalases from bacteria, fungi, protists, animals, and plants [, ]. This entry represent the core-forming domain of mono-functional, haem-containing catalases. It does not cover the region that carries an immune-responsive amphipathic octa-peptide that is found in the C-terminal of some catalases (IPR010582 from INTERPRO).; GO: 0004096 catalase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 7CAT_A 3NWL_D 4BLC_D 1TH3_D 1TH4_A 1TGU_B 1TH2_D 3RGS_D 3RE8_D 3RGP_C ....
Probab=99.57 E-value=1.7e-15 Score=136.58 Aligned_cols=66 Identities=48% Similarity=0.813 Sum_probs=54.2
Q ss_pred ccchHHHHHHHHhhhhhhcccccccCCCcccCCCcccccCCcccCCCccccCCCCCCcccCCCCCCC
Q psy8829 76 KLAAPFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKGP 142 (205)
Q Consensus 76 ~~~d~~Iq~R~~sy~d~~~~~LG~n~~~~pvN~P~~~~~~~~~rDG~m~~~n~~~~~nY~pn~~~~~ 142 (205)
.+.|+++|.|.++|.+.+.+|+|.|+.|||||||+|+ ++|++|||+|+++|+++.|||+|||++++
T Consensus 318 ~s~Dpil~aR~~aY~~s~~~R~~~n~~~lp~n~p~~~-~~~~~~dg~~~~~~~~~~~~~~~~~~~~~ 383 (384)
T PF00199_consen 318 PSDDPILQARSFAYADSQRRRLGANYQQLPVNEPKCP-VHNNQRDGAMRFGNQGSAPNYFPSSFGGP 383 (384)
T ss_dssp E-S-HHHHHHHHHHHHHHHHHTSTTGGGSGGGS-SSS--BSST---TT-TTTTTTS-SSSSCSSTTS
T ss_pred cCCCcchhcchhhhhhhhhccCCcccccCCCCCCCCC-cCCCCCCCCCccCCCCCCCCcCCCCCCCC
Confidence 3468999999999999999999999999999999998 99999999999999999999999999874
No 21
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=99.36 E-value=2.2e-13 Score=94.27 Aligned_cols=43 Identities=44% Similarity=0.669 Sum_probs=37.9
Q ss_pred cccCCCCCccchHHHHHhcCCHHHHHHHHHHHHHHhccCCcc-cC
Q psy8829 162 YKTEDEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAAPF-IQ 205 (205)
Q Consensus 162 ~~~~~~~df~Q~~~~~~~~~~~~~~~~l~~n~~~~l~~~~~~-i~ 205 (205)
+.+.++|||+|||+|| ++|+++||+|||+|||++|++|+++ ||
T Consensus 2 ~~~~~~ddf~Qa~~ly-~~l~~~er~~lv~nia~~l~~v~~~~i~ 45 (68)
T PF06628_consen 2 YRSEKDDDFSQARDLY-RVLSDEERERLVENIAGHLSGVSDEEIQ 45 (68)
T ss_dssp HGHGGGCSSHHHHHHH-HHSSHHHHHHHHHHHHHHHTTSSHHHHH
T ss_pred CCCCCCcchhhHHHHH-HHCCHHHHHHHHHHHHHHHccCChhhHH
Confidence 3455679999999999 5999999999999999999999877 64
No 22
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=45.49 E-value=29 Score=23.61 Aligned_cols=23 Identities=17% Similarity=0.499 Sum_probs=19.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhc
Q psy8829 175 ILWSNVLDDAARDRMTTNIASVLK 198 (205)
Q Consensus 175 ~~~~~~~~~~~~~~l~~n~~~~l~ 198 (205)
.+| +.+++.||+.|++.|..+|+
T Consensus 43 ~~W-~~~~~~ek~~m~~~l~~~l~ 65 (65)
T TIGR03092 43 AIW-KHANEQEKDEMLETLEQGVK 65 (65)
T ss_pred HHH-HhcCHHHHHHHHHHHHHhcC
Confidence 467 67899999999999988764
No 23
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=42.63 E-value=32 Score=23.48 Aligned_cols=22 Identities=18% Similarity=0.578 Sum_probs=17.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHh
Q psy8829 175 ILWSNVLDDAARDRMTTNIASVL 197 (205)
Q Consensus 175 ~~~~~~~~~~~~~~l~~n~~~~l 197 (205)
..| +.+++.+|+.+++.|..+|
T Consensus 44 ~~W-~~~~~~ek~~m~~~l~~~l 65 (65)
T PF14098_consen 44 VIW-KNSDESEKQEMVNTLEQGL 65 (65)
T ss_pred HHH-HhCCHHHHHHHHHHHHhcC
Confidence 357 5678999999999988765
No 24
>PF13945 NST1: Salt tolerance down-regulator
Probab=42.05 E-value=19 Score=29.68 Aligned_cols=17 Identities=18% Similarity=0.583 Sum_probs=15.1
Q ss_pred hhHhhccCCHHHHHHHHH
Q psy8829 52 RILWSNVLDDAARDRMTT 69 (205)
Q Consensus 52 g~lyr~~~~~~er~~Lv~ 69 (205)
++||. +|+++||..||.
T Consensus 108 keFW~-SL~eeERr~LVk 124 (190)
T PF13945_consen 108 KEFWE-SLSEEERRSLVK 124 (190)
T ss_pred HHHHH-ccCHHHHHHHHH
Confidence 68998 899999999984
No 25
>PF12630 Pox_polyA_pol_N: Poxvirus poly(A) polymerase N-terminal domain; InterPro: IPR024398 This domain is found at the N terminus of the pox virus Poly(A) polymerase protein []. Poly(A) polymerase (2.7.7.19 from EC) catalyses template-independent extension of the 3'-end of a DNA or RNA strand by one nucleotide at a time. The Poxvirus enzyme creates the 3'(poly)A tail of mRNAs, and is a heterodimer of a catalytic and a regulatory subunit. This is the catalytic subunit.; PDB: 3ERC_C 3ER8_D 3OWG_A 2GA9_D 2GAF_D 3ER9_B.
Probab=38.49 E-value=31 Score=25.81 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=17.7
Q ss_pred hccccchHHHHHHHHhhhhhhcc
Q psy8829 73 SVLKLAAPFIQGRLHSYIDTHIH 95 (205)
Q Consensus 73 ~~L~~~d~~Iq~R~~sy~d~~~~ 95 (205)
..+.+.+.+|+.|+.+||++|..
T Consensus 56 ~d~~~s~~eIk~rI~~YFsKQ~~ 78 (108)
T PF12630_consen 56 SDIESSDSEIKRRILEYFSKQRR 78 (108)
T ss_dssp TTSSS-THHHHHHHHHHTTGGGC
T ss_pred HhcCCCHHHHHHHHHHHHHhccc
Confidence 34446678999999999999963
No 26
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=35.20 E-value=50 Score=21.06 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=18.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhc
Q psy8829 175 ILWSNVLDDAARDRMTTNIASVLK 198 (205)
Q Consensus 175 ~~~~~~~~~~~~~~l~~n~~~~l~ 198 (205)
.-| +.|+++||..+...|..-++
T Consensus 28 ~~W-~~~s~~er~~i~~~l~~R~~ 50 (51)
T PF06945_consen 28 RDW-KSMSDDERRAILARLRARRA 50 (51)
T ss_pred HHH-hhCCHHHHHHHHHHHHHHhc
Confidence 457 68999999999998887665
No 27
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=33.92 E-value=57 Score=22.42 Aligned_cols=23 Identities=26% Similarity=0.619 Sum_probs=18.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhc
Q psy8829 175 ILWSNVLDDAARDRMTTNIASVLK 198 (205)
Q Consensus 175 ~~~~~~~~~~~~~~l~~n~~~~l~ 198 (205)
.+| +.+++.||+.+++.|..+|+
T Consensus 46 ~~W-~~~~~~ek~~m~~~l~~~l~ 68 (68)
T PRK02955 46 VIW-KNADENEKDEMLETLEQGLK 68 (68)
T ss_pred HHH-HhcCHHHHHHHHHHHHHhcC
Confidence 467 56789999999999988764
No 28
>PHA03155 hypothetical protein; Provisional
Probab=29.96 E-value=59 Score=24.64 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=31.1
Q ss_pred cCCHHHHHHHHHhhhhcccc-chHHHHHHHHhhhhhhc
Q psy8829 58 VLDDAARDRMTTNIASVLKL-AAPFIQGRLHSYIDTHI 94 (205)
Q Consensus 58 ~~~~~er~~Lv~Nia~~L~~-~d~~Iq~R~~sy~d~~~ 94 (205)
++++.||+-+|...++.|.+ +.+.|..|+-.......
T Consensus 41 ~LT~~qKea~I~s~v~~Lt~~A~~KIe~kVrk~~~~~v 78 (115)
T PHA03155 41 LLTPAQKDAIINSLVNKLTKKAEEKIRERVLKDLLPLV 78 (115)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 79999999999999999987 67888888877665543
No 29
>PF09720 Unstab_antitox: Putative addiction module component; InterPro: IPR013406 This entry defines several short bacterial proteins, typically about 75 amino acids long, which are always found as part of a pair (at least) of small genes. The other protein in the pair always belongs to a family of plasmid stabilisation proteins (IPR007712 from INTERPRO). It is likely that this protein and its partner comprise some form of addiction module - a pair of genes consisting of a stable toxin and an unstable antitoxin which mediate programmed cell death [] - although these gene pairs are usually found on the bacterial main chromosome.
Probab=29.93 E-value=72 Score=20.24 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHHHhccCC
Q psy8829 181 LDDAARDRMTTNIASVLKLAA 201 (205)
Q Consensus 181 ~~~~~~~~l~~n~~~~l~~~~ 201 (205)
|+..+|-.|+..|-.+|....
T Consensus 2 L~~~er~~L~e~L~~sl~~~~ 22 (54)
T PF09720_consen 2 LPPEERAELAEELWDSLDDPD 22 (54)
T ss_pred cCHHHHHHHHHHHHHHhcccc
Confidence 688899999999999998753
No 30
>PF08649 DASH_Dad1: DASH complex subunit Dad1; InterPro: IPR013958 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules []. Throughout the cell cycle Dad1 remains bound to kinetochores and its association is dependent on the Mis6 and Mal2 [].
Probab=29.19 E-value=42 Score=22.35 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhccC
Q psy8829 183 DAARDRMTTNIASVLKLA 200 (205)
Q Consensus 183 ~~~~~~l~~n~~~~l~~~ 200 (205)
+.||++|+.-|+..|..+
T Consensus 4 e~qR~~Li~eI~~~~e~v 21 (58)
T PF08649_consen 4 ERQRDRLIQEISESMESV 21 (58)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 358999999999988764
No 31
>PF13945 NST1: Salt tolerance down-regulator
Probab=29.15 E-value=45 Score=27.54 Aligned_cols=19 Identities=16% Similarity=0.520 Sum_probs=15.7
Q ss_pred chHHHHHhcCCHHHHHHHHH
Q psy8829 172 QPRILWSNVLDDAARDRMTT 191 (205)
Q Consensus 172 Q~~~~~~~~~~~~~~~~l~~ 191 (205)
-=++|| .+|+++||..||+
T Consensus 106 ~LkeFW-~SL~eeERr~LVk 124 (190)
T PF13945_consen 106 KLKEFW-ESLSEEERRSLVK 124 (190)
T ss_pred HHHHHH-HccCHHHHHHHHH
Confidence 346899 6999999999885
No 32
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=26.91 E-value=65 Score=24.55 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=27.9
Q ss_pred cCCHHHHHHHHHhhhhcccc-chHHHHHHHHhhhhhh
Q psy8829 58 VLDDAARDRMTTNIASVLKL-AAPFIQGRLHSYIDTH 93 (205)
Q Consensus 58 ~~~~~er~~Lv~Nia~~L~~-~d~~Iq~R~~sy~d~~ 93 (205)
++++.+|+-||...++.|.+ +.+.|..++-.....+
T Consensus 40 ~LTp~qKe~~I~s~~~~Lss~A~~KIe~kVr~~t~~~ 76 (118)
T PF05812_consen 40 VLTPAQKEAMITSAVSKLSSQASKKIEAKVRKLTAKL 76 (118)
T ss_dssp B--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 78999999999999999987 6788888877665544
No 33
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=24.66 E-value=1.2e+02 Score=27.85 Aligned_cols=27 Identities=19% Similarity=0.042 Sum_probs=23.8
Q ss_pred chhhHhhccCCHHHHHHHHHhhhhcccc
Q psy8829 50 QPRILWSNVLDDAARDRMTTNIASVLKL 77 (205)
Q Consensus 50 Qag~lyr~~~~~~er~~Lv~Nia~~L~~ 77 (205)
++.++|+ .|++++++.|..||...|.+
T Consensus 157 ~a~~~f~-~~~~~~~~~L~~~ii~~lpG 183 (394)
T TIGR00695 157 RAVEEAS-DMSEQDIAQLTRNIIAGLPG 183 (394)
T ss_pred HHHHHHH-hCCHHHHHHhhhhhhhcCCC
Confidence 7788997 79999999999999887765
No 34
>PF10410 DnaB_bind: DnaB-helicase binding domain of primase; InterPro: IPR019475 This entry represents the C-terminal region three-helical domain of DNA primase []. Primases synthesise short RNA strands on single-stranded DNA templates, thereby generating the hybrid duplexes required for the initiation of synthesis by DNA polymerases. Primases are recruited to single-stranded DNA by helicases - this domain binds DnaB-helicase []. It is associated with the Toprim domain IPR006171 from INTERPRO, which is the central catalytic core. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=22.92 E-value=80 Score=19.91 Aligned_cols=20 Identities=5% Similarity=0.102 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhccCCc
Q psy8829 183 DAARDRMTTNIASVLKLAAP 202 (205)
Q Consensus 183 ~~~~~~l~~n~~~~l~~~~~ 202 (205)
+++|.++++.++.-|+.+++
T Consensus 18 ~egk~~~~~~~~~~i~~i~~ 37 (59)
T PF10410_consen 18 PEGKAEAVREAAPLIAQIPD 37 (59)
T ss_dssp HHHHHHHHHHHHHHHTT--S
T ss_pred HHHHHHHHHHHHHHHHHCCC
Confidence 44555555555555555443
No 35
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=21.76 E-value=79 Score=21.17 Aligned_cols=24 Identities=8% Similarity=0.304 Sum_probs=18.2
Q ss_pred CCccchHHHHHhcCCHHHHHHHHHH
Q psy8829 168 DNFSQPRILWSNVLDDAARDRMTTN 192 (205)
Q Consensus 168 ~df~Q~~~~~~~~~~~~~~~~l~~n 192 (205)
+-+...+..| +.||++||+.+..-
T Consensus 34 e~~k~~~~~W-k~Ls~~EK~~Y~~~ 57 (73)
T PF09011_consen 34 EVMKEISERW-KSLSEEEKEPYEER 57 (73)
T ss_dssp HHHHHHHHHH-HHS-HHHHHHHHHH
T ss_pred HHHHHHHHHH-HhcCHHHHHHHHHH
Confidence 4467799999 78999999887654
No 36
>smart00398 HMG high mobility group.
Probab=21.21 E-value=92 Score=19.92 Aligned_cols=20 Identities=10% Similarity=0.310 Sum_probs=16.1
Q ss_pred chhhHhhccCCHHHHHHHHHh
Q psy8829 50 QPRILWSNVLDDAARDRMTTN 70 (205)
Q Consensus 50 Qag~lyr~~~~~~er~~Lv~N 70 (205)
..+..|+ .|++++|+.+..-
T Consensus 35 ~~~~~W~-~l~~~ek~~y~~~ 54 (70)
T smart00398 35 KLGERWK-LLSEEEKAPYEEK 54 (70)
T ss_pred HHHHHHH-cCCHHHHHHHHHH
Confidence 4478898 8999999988754
No 37
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=20.76 E-value=84 Score=19.99 Aligned_cols=20 Identities=0% Similarity=0.127 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHHHhccC
Q psy8829 181 LDDAARDRMTTNIASVLKLA 200 (205)
Q Consensus 181 ~~~~~~~~l~~n~~~~l~~~ 200 (205)
.|+++|.+|+..|+..|..+
T Consensus 12 rs~eqk~~l~~~it~~l~~~ 31 (61)
T PRK02220 12 RTEEQLKALVKDVTAAVSKN 31 (61)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 47889999999999988753
No 38
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=20.44 E-value=91 Score=19.92 Aligned_cols=20 Identities=5% Similarity=0.217 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHHHhccC
Q psy8829 181 LDDAARDRMTTNIASVLKLA 200 (205)
Q Consensus 181 ~~~~~~~~l~~n~~~~l~~~ 200 (205)
.+.++|++|++.|...|..+
T Consensus 12 rt~eqK~~l~~~it~~l~~~ 31 (63)
T TIGR00013 12 RTDEQKRQLIEGVTEAMAET 31 (63)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 36789999999999988753
No 39
>PRK10455 periplasmic protein; Reviewed
Probab=20.38 E-value=1.3e+02 Score=23.96 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=22.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhccCC
Q psy8829 175 ILWSNVLDDAARDRMTTNIASVLKLAA 201 (205)
Q Consensus 175 ~~~~~~~~~~~~~~l~~n~~~~l~~~~ 201 (205)
.+| .+|++++|+.|.+++-..+....
T Consensus 125 qiy-~vLTPEQr~q~~~~~ekr~~~~~ 150 (161)
T PRK10455 125 KIY-NVLTPEQKKQFNANFEKRLTERP 150 (161)
T ss_pred HHH-HhCCHHHHHHHHHHHHHHHHhcc
Confidence 367 79999999999999998887754
No 40
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=20.29 E-value=88 Score=19.52 Aligned_cols=19 Identities=5% Similarity=0.212 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHHHhccC
Q psy8829 182 DDAARDRMTTNIASVLKLA 200 (205)
Q Consensus 182 ~~~~~~~l~~n~~~~l~~~ 200 (205)
++++|.+|++.|+..|..+
T Consensus 12 t~eqk~~l~~~i~~~l~~~ 30 (58)
T cd00491 12 TDEQKRELIERVTEAVSEI 30 (58)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 6789999999999988663
No 41
>PF12125 Beta-TrCP_D: D domain of beta-TrCP; InterPro: IPR021977 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found associated with PF00646 from PFAM, PF00400 from PFAM. The protein that contains this domain functions as a ubiquitin ligase. Ubiquitination is required to direct proteins towards the proteasome for degradation. This protein is part of the WD40 class of F box proteins. The D domain of these F box proteins is involved in mediating the dimerisation of the protein. Dimerisation is necessary to polyubiquitinate substrates so this D domain is vital in directing substrates towards the proteasome for degradation. ; PDB: 2P64_A 1P22_A.
Probab=20.16 E-value=1.5e+02 Score=18.21 Aligned_cols=21 Identities=5% Similarity=0.074 Sum_probs=16.5
Q ss_pred hcCCHHHHHHHHHHHHHHhcc
Q psy8829 179 NVLDDAARDRMTTNIASVLKL 199 (205)
Q Consensus 179 ~~~~~~~~~~l~~n~~~~l~~ 199 (205)
..+++.||-.+|++|...|+.
T Consensus 5 ~~Wse~eQvdFVe~Ll~rM~H 25 (40)
T PF12125_consen 5 DKWSESEQVDFVEQLLSRMCH 25 (40)
T ss_dssp TTS-HHHHHHHHHHHHHTS-H
T ss_pred hccCchhHHHHHHHHHHHHHH
Confidence 468899999999999988864
Done!