RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8829
(205 letters)
>gnl|CDD|163712 cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme
catalase. Catalase is a ubiquitous enzyme found in both
prokaryotes and eukaryotes, which is involved in the
protection of cells from the toxic effects of peroxides.
It catalyzes the conversion of hydrogen peroxide to
water and molecular oxygen. Catalases also utilize
hydrogen peroxide to oxidize various substrates such as
alcohol or phenols. Clade 3 catalases are the most
abundant subfamily and are found in all three kingdoms
of life; they have a relatively small subunit size of 43
to 75 kDa, and bind a protoheme IX (heme b) group buried
deep inside the structure. Clade 3 catalases also bind
NADPH as a second redox-active cofactor. They form
tetramers, and in eukaryotic cells, catalases are
located in peroxisomes.
Length = 429
Score = 160 bits (407), Expect = 2e-47
Identities = 59/125 (47%), Positives = 74/125 (59%), Gaps = 4/125 (3%)
Query: 83 QGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAID-NQNGAPNYYPNSFKG 141
QGRL SY D H +RLG N++Q+PVN P V NYQRD M +D N GAPNY PNSF G
Sbjct: 285 QGRLFSYADAHRYRLGVNYHQLPVNRPK-CPVNNYQRDGAMRVDGNGGGAPNYEPNSFGG 343
Query: 142 PEPTPRGAWSTYNATGDVKRYKT-EDEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLA 200
P P A +GD RY +D+D+++Q L+ V + R+R+ NIA LK A
Sbjct: 344 PPEDPEYAEPPLPVSGDADRYNYRDDDDDYTQAGDLYRLV-SEDERERLVENIAGHLKGA 402
Query: 201 APFIQ 205
FIQ
Sbjct: 403 PEFIQ 407
Score = 92.6 bits (231), Expect = 3e-22
Identities = 35/83 (42%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 4 DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKT-EDEDNFSQPRILWSNVLDDA 62
N GAPNY PNSF GP P A +GD RY +D+D+++Q L+ V +
Sbjct: 328 GNGGGAPNYEPNSFGGPPEDPEYAEPPLPVSGDADRYNYRDDDDDYTQAGDLYRLV-SED 386
Query: 63 ARDRMTTNIASVLKLAAPFIQGR 85
R+R+ NIA LK A FIQ R
Sbjct: 387 ERERLVENIAGHLKGAPEFIQER 409
>gnl|CDD|223824 COG0753, KatE, Catalase [Inorganic ion transport and metabolism].
Length = 496
Score = 122 bits (309), Expect = 6e-33
Identities = 51/119 (42%), Positives = 65/119 (54%), Gaps = 6/119 (5%)
Query: 80 PFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSF 139
P +QGRL SY DT +RLG N++QIPVN P + V N QRD M + G NY PNSF
Sbjct: 338 PLLQGRLFSYGDTQRYRLGPNYHQIPVNRP-KCPVHNNQRDGQMRMGINTGPANYEPNSF 396
Query: 140 -KGPEPTPRGAWSTYNAT--GDVKRYKTE-DEDNFSQPRILWSNVLDDAARDRMTTNIA 194
PE + + GD +R + D+D FSQPR L+ L DA + + NIA
Sbjct: 397 GDNPEAPEQPGFVEPPERVEGDKQRRRAISDDDYFSQPRALY-RSLSDAEKQHLVDNIA 454
Score = 60.8 bits (148), Expect = 4e-11
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 1 MAIDNQNGAPNYYPNSF-KGPEPTPRGAWSTYNAT--GDVKRYKTE-DEDNFSQPRILWS 56
M + G NY PNSF PE + + GD +R + D+D FSQPR L+
Sbjct: 380 MRMGINTGPANYEPNSFGDNPEAPEQPGFVEPPERVEGDKQRRRAISDDDYFSQPRALY- 438
Query: 57 NVLDDAARDRMTTNIASVL-KLAAPFIQGRLHSY 89
L DA + + NIA L K+ P I+ R+ +
Sbjct: 439 RSLSDAEKQHLVDNIAFELSKVTDPEIKERVLDH 472
>gnl|CDD|163713 cd08157, catalase_fungal, Fungal catalases similar to yeast
catalases A and T. Catalase is a ubiquitous enzyme
found in both prokaryotes and eukaryotes, which is
involved in the protection of cells from the toxic
effects of peroxides. It catalyzes the conversion of
hydrogen peroxide to water and molecular oxygen.
Catalases also utilize hydrogen peroxide to oxidize
various substrates such as alcohol or phenols. This
family of fungal catalases has a relatively small
subunit size, and binds a protoheme IX (heme b) group
buried deep inside the structure. Fungal catalases also
bind NADPH as a second redox-active cofactor. They form
tetramers; in eukaryotic cells, catalases are typically
located in peroxisomes. Saccharomyces cerevisiae
catalase T is found in the cytoplasm, though.
Length = 451
Score = 107 bits (270), Expect = 1e-27
Identities = 52/135 (38%), Positives = 69/135 (51%), Gaps = 9/135 (6%)
Query: 78 AAPFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVAN-YQRDAPMAIDNQNGA-PNY- 134
A P +Q RL SY D H HRLG N+ Q+PVN P V N YQRD PM+++ G PNY
Sbjct: 296 ADPVLQARLFSYPDAHRHRLGPNYQQLPVNRPKTSPVYNPYQRDGPMSVNGNYGGDPNYV 355
Query: 135 ---YPNSFKGPEPTPRGAWSTYNATGDVKRYKTE-DEDNFSQPRILWSNVLDDAARDRMT 190
P ++ G N G+V + TE +++F QPR LW V ++R
Sbjct: 356 SSILPPTYFKKRVDADG--HHENWVGEVVAFLTEITDEDFVQPRALWEVVGKPGQQERFV 413
Query: 191 TNIASVLKLAAPFIQ 205
N+A L A P I+
Sbjct: 414 KNVAGHLSGAPPEIR 428
Score = 51.2 bits (123), Expect = 8e-08
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 1 MAIDNQNGA-PNY----YPNSFKGPEPTPRGAWSTYNATGDVKRYKTE-DEDNFSQPRIL 54
M+++ G PNY P ++ G N G+V + TE +++F QPR L
Sbjct: 342 MSVNGNYGGDPNYVSSILPPTYFKKRVDADG--HHENWVGEVVAFLTEITDEDFVQPRAL 399
Query: 55 WSNVLDDAARDRMTTNIASVLKLAAPFIQGRLHSY 89
W V ++R N+A L A P I+ R++
Sbjct: 400 WEVVGKPGQQERFVKNVAGHLSGAPPEIRKRVYEI 434
>gnl|CDD|163705 cd00328, catalase, Catalase heme-binding enzyme. Catalase is a
ubiquitous enzyme found in both prokaryotes and
eukaryotes, which is involved in the protection of cells
from the toxic effects of peroxides. It catalyzes the
conversion of hydrogen peroxide to water and molecular
oxygen. Catalases also utilize hydrogen peroxide to
oxidize various substrates such as alcohol or phenols.
Most catalases exist as tetramers of 65KD subunits
containing a protoheme IX group buried deep inside the
structure. In eukaryotic cells, catalases are located in
peroxisomes.
Length = 433
Score = 94.1 bits (234), Expect = 1e-22
Identities = 47/133 (35%), Positives = 68/133 (51%), Gaps = 10/133 (7%)
Query: 80 PFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSF 139
P +QGRL SY DT ++RLG NF Q+PVN PY V N QRD +++ G PNY PN+
Sbjct: 282 PLLQGRLFSYADTQLYRLGPNFQQLPVNRPY-APVHNNQRDGAGNMNDNTGVPNYEPNAK 340
Query: 140 KGPEPTP------RGAWSTYNATGDVKRYKTEDEDNFSQPRILWSNVLDDAARDRMTTNI 193
P RG +S + + G + T ++DNF+Q R+ + L + R+
Sbjct: 341 DVRYPAQGAPKFDRGHFSHWKS-GVNREASTTNDDNFTQARLFY-RSLTPGQQKRLVDAF 398
Query: 194 A-SVLKLAAPFIQ 205
+ +P IQ
Sbjct: 399 RFELADAVSPQIQ 411
Score = 32.8 bits (75), Expect = 0.093
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 2 AIDNQNGAPNYYPNSFKGPEPTP------RGAWSTYNATGDVKRYKTEDEDNFSQPRILW 55
DN PNY PN+ P RG +S + + G + T ++DNF+Q R+ +
Sbjct: 326 MNDNTGV-PNYEPNAKDVRYPAQGAPKFDRGHFSHWKS-GVNREASTTNDDNFTQARLFY 383
Query: 56 SNVLDDAARDRMTTNIA-SVLKLAAPFIQGRLHSY 89
L + R+ + +P IQ R+
Sbjct: 384 -RSLTPGQQKRLVDAFRFELADAVSPQIQQRVLDQ 417
>gnl|CDD|163710 cd08154, catalase_clade_1, Clade 1 of the heme-binding enzyme
catalase. Catalase is a ubiquitous enzyme found in both
prokaryotes and eukaryotes, which is involved in the
protection of cells from the toxic effects of peroxides.
It catalyzes the conversion of hydrogen peroxide to
water and molecular oxygen. Catalases also utilize
hydrogen peroxide to oxidize various substrates such as
alcohol or phenols. Clade 1 catalases are found in
bacteria, algae, and plants; they have a relatively
small subunit size of 55 to 69 kDa, and bind a protoheme
IX (heme b) group buried deep inside the structure. They
appear to form tetramers. In eukaryotic cells, catalases
are located in peroxisomes.
Length = 469
Score = 91.6 bits (228), Expect = 9e-22
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 83 QGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKGP 142
QGRL SY DT +RLG N+ Q+P+N P + V N QRD M + NY P+ G
Sbjct: 327 QGRLFSYSDTQRYRLGPNYLQLPINAP-KAAVHNNQRDGQMNYGHDTSDVNYEPSRLDGL 385
Query: 143 EPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILWSNVLDDAARDRMTTNIASVLK 198
P+ +S +G ++ +NF Q + + + ++ + N+ L
Sbjct: 386 PEAPKYPYSQPPLSGTTQQAPIAKTNNFKQAGERYRS-FSEEEQENLIKNLVVDLS 440
Score = 41.1 bits (97), Expect = 2e-04
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Query: 1 MAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILWSNVLD 60
M + NY P+ G P+ +S +G ++ +NF Q + +
Sbjct: 366 MNYGHDTSDVNYEPSRLDGLPEAPKYPYSQPPLSGTTQQAPIAKTNNFKQAGERYRS-FS 424
Query: 61 DAARDRMTTNIASVLKLAAPFIQGRLHSY 89
+ ++ + N+ L I+ R+ SY
Sbjct: 425 EEEQENLIKNLVVDLSDVNEEIKLRMLSY 453
>gnl|CDD|215003 smart01060, Catalase, Catalases are antioxidant enzymes that
catalyse the conversion of hydrogen peroxide to water
and molecular oxygen, serving to protect cells from its
toxic effects. Hydrogen peroxide is produced as a
consequence of oxidative cellular metabolism and can be
converted to the highly reactive hydroxyl radical via
transition metals, this radical being able to damage a
wide variety of molecules within a cell, leading to
oxidative stress and cell death. Catalases act to
neutralise hydrogen peroxide toxicity, and are produced
by all aerobic organisms ranging from bacteria to man.
Most catalases are mono-functional, haem-containing
enzymes, although there are also bifunctional
haem-containing peroxidase/catalases that are closely
related to plant peroxidases, and non-haem,
manganese-containing catalases that are found in
bacteria.
Length = 373
Score = 90.6 bits (226), Expect = 1e-21
Identities = 32/56 (57%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 80 PFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAID-NQNGAPNY 134
+QGRL SY DT +RLG N++Q+PVN P R V NYQRD M +D NQ G PNY
Sbjct: 319 KMLQGRLFSYPDTQRYRLGPNYHQLPVNRP-RCPVHNYQRDGAMRVDGNQGGDPNY 373
>gnl|CDD|215783 pfam00199, Catalase, Catalase.
Length = 383
Score = 82.7 bits (205), Expect = 1e-18
Identities = 32/64 (50%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 80 PFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSF 139
P +Q RL +Y D+ RLG N+ Q+PVN P R V N RD M N G PNY PNSF
Sbjct: 322 PMLQARLFAYADSQRRRLGPNYQQLPVNRP-RCPVHNQ-RDGAMRFGNYGGEPNYEPNSF 379
Query: 140 KGPE 143
GP+
Sbjct: 380 GGPQ 383
Score = 29.2 bits (66), Expect = 1.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 1 MAIDNQNGAPNYYPNSFKGPE 21
M N G PNY PNSF GP+
Sbjct: 363 MRFGNYGGEPNYEPNSFGGPQ 383
>gnl|CDD|163711 cd08155, catalase_clade_2, Clade 2 of the heme-binding enzyme
catalase. Catalase is a ubiquitous enzyme found in both
prokaryotes and eukaryotes, which is involved in the
protection of cells from the toxic effects of peroxides.
It catalyzes the conversion of hydrogen peroxide to
water and molecular oxygen. Catalases also utilize
hydrogen peroxide to oxidize various substrates such as
alcohol or phenols. Clade 2 catalases are mostly found
in bacteria and fungi; they have a large subunit size of
75 to 84 kDa, and bind a heme d group buried deep inside
the structure. They appear to form tetramers. In
eukaryotic cells, catalases are located in peroxisomes.
Length = 443
Score = 82.8 bits (205), Expect = 1e-18
Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 80 PFIQGRLHSYIDTHIHRLG-ANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNS 138
P +QGRL SY+DT + RLG NF+++P+N P V N QRD M + G NY+PNS
Sbjct: 289 PLLQGRLFSYLDTQLSRLGGPNFHELPINRP-VCPVHNNQRDGHMRMTINKGRVNYFPNS 347
Query: 139 FKG----PEPTPRGAWSTY--NATGDVKRYKTED-EDNFSQPRILW 177
G + Y G R ++E D++SQ R+ W
Sbjct: 348 LGAGPPRAASPAEGGFVHYPEKVEGPKIRIRSESFADHYSQARLFW 393
Score = 32.3 bits (74), Expect = 0.13
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 1 MAIDNQNGAPNYYPNSFKG----PEPTPRGAWSTY--NATGDVKRYKTED-EDNFSQPRI 53
M + G NY+PNS G + Y G R ++E D++SQ R+
Sbjct: 332 MRMTINKGRVNYFPNSLGAGPPRAASPAEGGFVHYPEKVEGPKIRIRSESFADHYSQARL 391
Query: 54 LW 55
W
Sbjct: 392 FW 393
>gnl|CDD|236886 PRK11249, katE, hydroperoxidase II; Provisional.
Length = 752
Score = 82.8 bits (205), Expect = 2e-18
Identities = 47/113 (41%), Positives = 59/113 (52%), Gaps = 21/113 (18%)
Query: 80 PFIQGRLHSYIDTHIHRL-GANFNQIPVN---CPYRVRVANYQRDAP--MAIDNQNGAPN 133
P +QGRL SY DT I RL G NF++IP+N CPY N+QRD M ID G N
Sbjct: 403 PLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPY----HNFQRDGMHRMTID--TGPAN 456
Query: 134 YYPNSFKG--PEPTP----RGAWSTYNATGDVKRYKTEDE---DNFSQPRILW 177
Y PNS G P TP RG + +Y + + + D +SQPR+ W
Sbjct: 457 YEPNSINGNWPRETPPAPKRGGFESYQERVEGNKVRERSPSFGDYYSQPRLFW 509
Score = 31.6 bits (72), Expect = 0.31
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 1 MAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYNATGDVKRYKTEDE---DNFSQP 51
M ID G NY PNS G P TP RG + +Y + + + D +SQP
Sbjct: 448 MTIDT--GPANYEPNSINGNWPRETPPAPKRGGFESYQERVEGNKVRERSPSFGDYYSQP 505
Query: 52 RILW 55
R+ W
Sbjct: 506 RLFW 509
>gnl|CDD|215328 PLN02609, PLN02609, catalase.
Length = 492
Score = 77.1 bits (190), Expect = 1e-16
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Query: 82 IQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSF-- 139
+Q R+ +Y DT HRLG N+ Q+PVN P + N + M +++ NY+P+ F
Sbjct: 341 LQTRIFAYADTQRHRLGPNYLQLPVNAP-KCAHHNNHHEGFMNFMHRDEEVNYFPSRFDP 399
Query: 140 -KGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILWSNVLDDAARDRMTTNIASVLK 198
+ E P +G ++ K E E+NF QP + + ++R L
Sbjct: 400 VRHAERVPI---PHPPLSGRREKCKIEKENNFKQPGERYRS-WSPDRQERFIKRWVDALS 455
Query: 199 LAAPFIQ 205
+
Sbjct: 456 DPRVTHE 462
Score = 39.7 bits (93), Expect = 6e-04
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 7/79 (8%)
Query: 10 PNYYPNSF---KGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILWSNVLDDAARDR 66
NY+P+ F + E P +G ++ K E E+NF QP + + ++R
Sbjct: 390 VNYFPSRFDPVRHAERVPI---PHPPLSGRREKCKIEKENNFKQPGERYRS-WSPDRQER 445
Query: 67 MTTNIASVLKLAAPFIQGR 85
L + R
Sbjct: 446 FIKRWVDALSDPRVTHEIR 464
>gnl|CDD|219112 pfam06628, Catalase-rel, Catalase-related immune-responsive.
This family represents a small conserved region within
catalase enzymes (EC:1.11.1.6). All members also
contain the Catalase family, pfam00199 domain. Catalase
decomposes hydrogen peroxide into water and oxygen,
serving to protect cells from its toxic effects. This
domain carries the immune-responsive amphipathic
octa-peptide that is recognised by T cells.
Length = 68
Score = 46.2 bits (111), Expect = 2e-07
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 39 RYKTEDEDNFSQPRILWSNVLDDAARDRMTTNIASVL-KLAAPFIQGRLHSYIDTHIHR- 96
R ++E D+FSQ + + + A + R+ NIA L K+ P I+ R+ S+ +
Sbjct: 1 RARSEKFDHFSQAGLFY-RSMSPAEQQRLIDNIAFELSKVTDPEIRERVVSHF-YKVDPD 58
Query: 97 LGA 99
LGA
Sbjct: 59 LGA 61
Score = 45.9 bits (110), Expect = 3e-07
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 161 RYKTEDEDNFSQPRILWSNVLDDAARDRMTTNIA 194
R ++E D+FSQ + + + A + R+ NIA
Sbjct: 1 RARSEKFDHFSQAGLFY-RSMSPAEQQRLIDNIA 33
>gnl|CDD|200251 TIGR03214, ura-cupin, putative allantoin catabolism protein. This
model represents a protein containing a tandem
arrangement of cupin domains (N-terminal part of
pfam07883 and C-terminal more distantly related to
pfam00190). This protein is found in the vicinity of
genes involved in the catabolism of allantoin, a
breakdown product of urate and sometimes of urate
iteslf. The distribution of pathway components in the
genomes in which this family is observed suggests that
the function is linked to the allantoate catabolism to
glyoxylate pathway (GenProp0686) since it is sometimes
found in genomes lacking any elements of the
xanthine-to-allantoin pathways (e.g. in Enterococcus
faecalis).
Length = 252
Score = 27.0 bits (60), Expect = 6.2
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 12/64 (18%)
Query: 36 DVKRYKTEDEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAAPFIQGRLHSYIDTHIH 95
D++ E D+ + + + A D M +I S F G H YI+TH+
Sbjct: 145 DIEPEAYEGMDD----VWATTLLPKELAFD-MNVHILS-------FEPGASHPYIETHVM 192
Query: 96 RLGA 99
G
Sbjct: 193 EHGL 196
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.410
Gapped
Lambda K H
0.267 0.0853 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,663,441
Number of extensions: 964674
Number of successful extensions: 726
Number of sequences better than 10.0: 1
Number of HSP's gapped: 694
Number of HSP's successfully gapped: 29
Length of query: 205
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 113
Effective length of database: 6,857,034
Effective search space: 774844842
Effective search space used: 774844842
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.5 bits)