RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8829
(205 letters)
>1dgf_A Catalase; heme, NADPH, hydrogen peroxide, oxidoreductase; HET: HEM
NDP; 1.50A {Homo sapiens} SCOP: e.5.1.1 PDB: 1dgg_A*
1f4j_A* 1qqw_A* 1dgh_A* 1dgb_A* 3rgp_A* 3re8_A* 3rgs_A*
3nwl_A* 4blc_A* 1th2_A* 1th3_A* 1th4_A* 1tgu_A* 7cat_A*
8cat_A*
Length = 497
Score = 172 bits (438), Expect = 1e-51
Identities = 68/127 (53%), Positives = 84/127 (66%), Gaps = 1/127 (0%)
Query: 80 PFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAID-NQNGAPNYYPNS 138
+QGRL +Y DTH HRLG N+ IPVNCPYR RVANYQRD PM + NQ GAPNYYPNS
Sbjct: 345 KMLQGRLFAYPDTHRHRLGPNYLHIPVNCPYRARVANYQRDGPMCMQDNQGGAPNYYPNS 404
Query: 139 FKGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILWSNVLDDAARDRMTTNIASVLK 198
F PE P + +G+V+R+ T ++DN +Q R + NVL++ R R+ NIA LK
Sbjct: 405 FGAPEQQPSALEHSIQYSGEVRRFNTANDDNVTQVRAFYVNVLNEEQRKRLCENIAGHLK 464
Query: 199 LAAPFIQ 205
A FIQ
Sbjct: 465 DAQIFIQ 471
Score = 97.6 bits (244), Expect = 4e-24
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 1 MAID-NQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILWSNVL 59
M + NQ GAPNYYPNSF PE P + +G+V+R+ T ++DN +Q R + NVL
Sbjct: 388 MCMQDNQGGAPNYYPNSFGAPEQQPSALEHSIQYSGEVRRFNTANDDNVTQVRAFYVNVL 447
Query: 60 DDAARDRMTTNIASVLKLAAPFIQGRLHSY 89
++ R R+ NIA LK A FIQ +
Sbjct: 448 NEEQRKRLCENIAGHLKDAQIFIQKKAVKN 477
>1m7s_A Catalase; beta barrel, alpha helical domain, oxidoreductase; HET:
HEM; 1.80A {Pseudomonas syringae} SCOP: e.5.1.1
Length = 484
Score = 164 bits (418), Expect = 7e-49
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 2/126 (1%)
Query: 80 PFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSF 139
+QGR+ SY DT ++RLGAN +PVN P +V V N +D + + NY P+
Sbjct: 323 RLLQGRVFSYADTQMYRLGANGLSLPVNQP-KVAVNNGNQDGALNTGHTTSGVNYEPSRL 381
Query: 140 KGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILWSNVLDDAARDRMTTNIASVLKL 199
+ + +S +G ++ K E NF Q L+ + + L
Sbjct: 382 EPRPADDKARYSELPLSGTTQQAKITREQNFKQAGDLY-RSYSAKEKTDLVQKFGESLAD 440
Query: 200 AAPFIQ 205
+
Sbjct: 441 TLTESK 446
Score = 93.8 bits (234), Expect = 9e-23
Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 1/85 (1%)
Query: 1 MAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILWSNVLD 60
+ + NY P+ + + +S +G ++ K E NF Q L+
Sbjct: 365 LNTGHTTSGVNYEPSRLEPRPADDKARYSELPLSGTTQQAKITREQNFKQAGDLY-RSYS 423
Query: 61 DAARDRMTTNIASVLKLAAPFIQGR 85
+ + L +
Sbjct: 424 AKEKTDLVQKFGESLADTLTESKNI 448
>2isa_A Catalase; peroxidase, heme, oxidoreductase, iron, hydrogen
peroxide; HET: OMT HEM; 1.97A {Vibrio salmonicida} PDB:
1m85_A* 1mqf_A* 1nm0_A* 2cag_A* 2cah_A* 1e93_A* 1h7k_A*
1h6n_A* 3hb6_A*
Length = 483
Score = 163 bits (416), Expect = 2e-48
Identities = 43/128 (33%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Query: 80 PFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAID-NQNGAPNYYPNS 138
+QGRL +Y D +RLG N IPVN P R V +Y RD M +D N Y PN
Sbjct: 327 KMLQGRLFAYGDAQRYRLGVNHQHIPVNAP-RCPVHSYHRDGAMRVDGNFGSTLGYEPND 385
Query: 139 FKGPEPTPRGAWSTYNATGDVKRYK-TEDEDNFSQPRILWSNVLDDAARDRMTTNIASVL 197
P + N G + EDED FSQP L+ ++ + + N A L
Sbjct: 386 QGQWAEQPDFSEPPLNLDGAAAHWDHREDEDYFSQPGDLF-GLMTAEKQAILFDNTARNL 444
Query: 198 KLAAPFIQ 205
IQ
Sbjct: 445 NGVPKEIQ 452
Score = 90.7 bits (226), Expect = 1e-21
Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 1 MAID-NQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYK-TEDEDNFSQPRILWSNV 58
M +D N Y PN P + N G + EDED FSQP L+ +
Sbjct: 369 MRVDGNFGSTLGYEPNDQGQWAEQPDFSEPPLNLDGAAAHWDHREDEDYFSQPGDLF-GL 427
Query: 59 LDDAARDRMTTNIASVLKLAAPFIQGR 85
+ + + N A L IQ R
Sbjct: 428 MTAEKQAILFDNTARNLNGVPKEIQLR 454
>1gwe_A Catalase; oxidoreductase, hdyrogen-peroxide:hydrogen peroxide
oxidoreductase; HET: HEM; 0.88A {Micrococcus luteus}
SCOP: e.5.1.1 PDB: 1gwh_A* 1hbz_A* 1gwf_A*
Length = 503
Score = 161 bits (409), Expect = 2e-47
Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 5/130 (3%)
Query: 80 PFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSF 139
+ GR +Y D ++R+GA+ NQ+PVN P + V NY + M D+ Y PNS
Sbjct: 334 RMLLGRAFAYHDAQLYRVGAHVNQLPVNRP-KNAVHNYAFEGQMWYDHTGDRSTYVPNSN 392
Query: 140 KGPEPTPRGA-WSTYNATGDVKRYKT---EDEDNFSQPRILWSNVLDDAARDRMTTNIAS 195
G + A G + R D+D+F Q L V D RD +A
Sbjct: 393 GDSWSDETGPVDDGWEADGTLTREAQALRADDDDFGQAGTLVREVFSDQERDDFVETVAG 452
Query: 196 VLKLAAPFIQ 205
LK +Q
Sbjct: 453 ALKGVRQDVQ 462
Score = 90.4 bits (225), Expect = 2e-21
Identities = 24/89 (26%), Positives = 31/89 (34%), Gaps = 4/89 (4%)
Query: 1 MAIDNQNGAPNYYPNSFKGPEPTPRGA-WSTYNATGDVKRYKT---EDEDNFSQPRILWS 56
M D+ Y PNS G + A G + R D+D+F Q L
Sbjct: 376 MWYDHTGDRSTYVPNSNGDSWSDETGPVDDGWEADGTLTREAQALRADDDDFGQAGTLVR 435
Query: 57 NVLDDAARDRMTTNIASVLKLAAPFIQGR 85
V D RD +A LK +Q R
Sbjct: 436 EVFSDQERDDFVETVAGALKGVRQDVQAR 464
>1si8_A Catalase; N-terminal ARM, anti-parallel beta-barrel, wrapping
region, terminal helical region, tetramer, heme group,
oxidoreducta; HET: HEM; 2.30A {Enterococcus faecalis}
SCOP: e.5.1.1
Length = 484
Score = 158 bits (403), Expect = 1e-46
Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 5/128 (3%)
Query: 80 PFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSF 139
+QGRL +Y D H HR+GAN +Q+P+N + V NYQ+D M +N N NY PNS+
Sbjct: 328 KLLQGRLFAYGDAHRHRVGANSHQLPINQA-KAPVNNYQKDGNMRFNNGNSEINYEPNSY 386
Query: 140 -KGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILWSNVLDDAARDRMTTNIASVLK 198
+ P+ P S++ G+V Y D+F+Q L+ N+L ++ + NIA+ L
Sbjct: 387 TETPKEDPTAKISSFEVEGNVGNYSYNQ-DHFTQANALY-NLLPSEEKENLINNIAASLG 444
Query: 199 LAA-PFIQ 205
I
Sbjct: 445 QVKNQEII 452
Score = 86.1 bits (214), Expect = 5e-20
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 1 MAIDNQNGAPNYYPNSF-KGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILWSNVL 59
M +N N NY PNS+ + P+ P S++ G+V Y D+F+Q L+ N+L
Sbjct: 370 MRFNNGNSEINYEPNSYTETPKEDPTAKISSFEVEGNVGNYSYNQ-DHFTQANALY-NLL 427
Query: 60 DDAARDRMTTNIASVLKLAA-PFIQGR 85
++ + NIA+ L I R
Sbjct: 428 PSEEKENLINNIAASLGQVKNQEIIAR 454
>1qwl_A KATA catalase; beta barrel, azide complex, oxyferryl complex,
oxidoreductas; HET: HEM; 1.60A {Helicobacter pylori}
SCOP: e.5.1.1 PDB: 1qwm_A* 2a9e_A* 2iqf_A*
Length = 505
Score = 155 bits (395), Expect = 2e-45
Identities = 40/134 (29%), Positives = 55/134 (41%), Gaps = 10/134 (7%)
Query: 80 PFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSF 139
+QGRL SY DTH +RLG N+ QIPVN P R + RD M NY P+S
Sbjct: 330 RMLQGRLFSYGDTHRYRLGVNYPQIPVNKP-RCPFHSSSRDGYMQNGYYGSLQNYTPSSL 388
Query: 140 KGPEPTPRGAWSTYNATGDVK-------RYKTEDEDNFSQPRILWSNVLDDAARDRMTTN 192
G + +N K Y+ +D D ++QP + L ++R+
Sbjct: 389 PGYKEDKSARDPKFNLAHIEKEFEVWNWDYRADDSDYYTQPGDYY-RSLPADEKERLHDT 447
Query: 193 IASVLKLAA-PFIQ 205
I L I
Sbjct: 448 IGESLAHVTHKEIV 461
Score = 83.4 bits (207), Expect = 4e-19
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 9/93 (9%)
Query: 1 MAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVK-------RYKTEDEDNFSQPRI 53
M NY P+S G + +N K Y+ +D D ++QP
Sbjct: 372 MQNGYYGSLQNYTPSSLPGYKEDKSARDPKFNLAHIEKEFEVWNWDYRADDSDYYTQPGD 431
Query: 54 LWSNVLDDAARDRMTTNIASVLKLAA-PFIQGR 85
+ L ++R+ I L I +
Sbjct: 432 YY-RSLPADEKERLHDTIGESLAHVTHKEIVDK 463
>2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A
{Exiguobacterium oxidotolerans}
Length = 491
Score = 152 bits (387), Expect = 2e-44
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 5/129 (3%)
Query: 80 PFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSF 139
+QGRL SY DT HR+G N+ Q+P+NCP +V NYQRD M Q + NY PN +
Sbjct: 330 KLLQGRLFSYSDTQRHRIGPNYQQLPINCP-FAQVNNYQRDGAMPFKQQTSSVNYEPNRY 388
Query: 140 KG-PEPTPRGAWSTYNATGDVKRYK-TEDEDNFSQPRILWSNVLDDAARDRMTTNIASVL 197
+ P+ TP T D+ E +NF Q ++ + + + + N+ + L
Sbjct: 389 QDEPKQTPEYTEDTQPLHDDIHGRLEIEKTNNFGQAGEVY-RRMTEEEQMALLNNLVNDL 447
Query: 198 -KLAAPFIQ 205
++
Sbjct: 448 QQVRHENTV 456
Score = 80.7 bits (200), Expect = 4e-18
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 1 MAIDNQNGAPNYYPNSFKG-PEPTPRGAWSTYNATGDVKRYK-TEDEDNFSQPRILWSNV 58
M Q + NY PN ++ P+ TP T D+ E +NF Q ++
Sbjct: 372 MPFKQQTSSVNYEPNRYQDEPKQTPEYTEDTQPLHDDIHGRLEIEKTNNFGQAGEVY-RR 430
Query: 59 LDDAARDRMTTNIASVL-KLAAPFIQGR 85
+ + + + N+ + L ++
Sbjct: 431 MTEEEQMALLNNLVNDLQQVRHENTVLL 458
>2xq1_A Peroxisomal catalase; oxidoreductase, hydrogen peroxide
detoxification, PTS1; HET: HEM; 2.90A {Pichia angusta}
Length = 509
Score = 147 bits (373), Expect = 4e-42
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 8/134 (5%)
Query: 80 PFIQGRLHSYIDTHIHRLGANFNQIPVNCPY-RVRVANYQRDAPMAIDNQNGAPNYYPNS 138
P +Q RL SY DTH HRLG N++QIPVNCP RD PM +D G Y N+
Sbjct: 341 PVLQSRLFSYPDTHRHRLGPNYHQIPVNCPLKSGSFNPINRDGPMCVDGNLGGTPNYANA 400
Query: 139 FKGP-----EPTPRGAWSTYNATGDVKRYKTE-DEDNFSQPRILWSNV-LDDAARDRMTT 191
+ P P G TG+V Y E + ++ QP++ W + ++ +
Sbjct: 401 YNCPIQYAVSPKASGNKPDEKYTGEVVPYHWEHTDYDYFQPKMFWKVLGRTPGEQESLVK 460
Query: 192 NIASVLKLAAPFIQ 205
N+A+ + A FIQ
Sbjct: 461 NVANHVSAADEFIQ 474
Score = 77.3 bits (191), Expect = 6e-17
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 1 MAIDNQNGAPNYYPNSFKGP-----EPTPRGAWSTYNATGDVKRYKTE-DEDNFSQPRIL 54
M +D G Y N++ P P G TG+V Y E + ++ QP++
Sbjct: 385 MCVDGNLGGTPNYANAYNCPIQYAVSPKASGNKPDEKYTGEVVPYHWEHTDYDYFQPKMF 444
Query: 55 WSNV-LDDAARDRMTTNIASVLKLAAPFIQGR 85
W + ++ + N+A+ + A FIQ R
Sbjct: 445 WKVLGRTPGEQESLVKNVANHVSAADEFIQDR 476
>1a4e_A Catalase A; oxidoreductase, peroxidase; HET: HEM; 2.40A
{Saccharomyces cerevisiae} SCOP: e.5.1.1
Length = 488
Score = 146 bits (371), Expect = 5e-42
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 80 PFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVR-VANYQRDAPMAID-NQNGAPNYYPN 137
P +Q RL SY D H +RLG NF+QIPVNCPY + RD PM ++ N P Y N
Sbjct: 332 PVLQARLFSYADAHRYRLGPNFHQIPVNCPYASKFFNPAIRDGPMNVNGNFGSEPTYLAN 391
Query: 138 SFKGPEPTPRGAWSTY--NATGDVKRYK---TEDEDNFSQPRILWSNVLDDAA-RDRMTT 191
+ G Y + + +F Q R L+ + + +
Sbjct: 392 DKSYTYIQQDRPIQQHQEVWNGPAIPYHWATSPGDVDFVQARNLYRVLGKQPGQQKNLAY 451
Query: 192 NIASVLKLAAPFIQ 205
NI ++ A P IQ
Sbjct: 452 NIGIHVEGACPQIQ 465
Score = 77.6 bits (192), Expect = 4e-17
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 1 MAID-NQNGAPNYYPNSFKGPEPTPRGAWSTY--NATGDVKRYK---TEDEDNFSQPRIL 54
M ++ N P Y N + G Y + + +F Q R L
Sbjct: 376 MNVNGNFGSEPTYLANDKSYTYIQQDRPIQQHQEVWNGPAIPYHWATSPGDVDFVQARNL 435
Query: 55 WSNVLDDAA-RDRMTTNIASVLKLAAPFIQGR 85
+ + + + NI ++ A P IQ R
Sbjct: 436 YRVLGKQPGQQKNLAYNIGIHVEGACPQIQQR 467
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET:
HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Length = 715
Score = 143 bits (362), Expect = 7e-40
Identities = 41/132 (31%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
Query: 80 PFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSF 139
P +QGR SY DT I RLG NF ++P+N P V N+ RD M G NYYPN F
Sbjct: 349 PLLQGRNFSYFDTQISRLGVNFQELPINRP-VCPVMNFNRDGAMRHTISRGTVNYYPNRF 407
Query: 140 KG--PEPTPRGAWSTYNA--TGDVKRYKTE-DEDNFSQPRILWSNVLDDAARDRMTTNIA 194
P G + Y G R ++ +++FSQ ++ + N + + M
Sbjct: 408 DACPPASLKEGGYLEYAQKVAGIKARARSAKFKEHFSQAQLFY-NSMSPIEKQHMINAFG 466
Query: 195 SVL-KLAAPFIQ 205
L P +
Sbjct: 467 FELDHCEDPVVY 478
Score = 72.8 bits (179), Expect = 2e-15
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Query: 1 MAIDNQNGAPNYYPNSFKG--PEPTPRGAWSTYNA--TGDVKRYKTE-DEDNFSQPRILW 55
M G NYYPN F P G + Y G R ++ +++FSQ ++ +
Sbjct: 391 MRHTISRGTVNYYPNRFDACPPASLKEGGYLEYAQKVAGIKARARSAKFKEHFSQAQLFY 450
Query: 56 SNVLDDAARDRMTTNIASVL-KLAAPFIQGR 85
N + + M L P + GR
Sbjct: 451 -NSMSPIEKQHMINAFGFELDHCEDPVVYGR 480
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A
{Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A*
3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A*
4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A*
1gg9_A* 1ggf_A* ...
Length = 753
Score = 136 bits (345), Expect = 1e-37
Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 13/137 (9%)
Query: 80 PFIQGRLHSYIDTHIHRLGA-NFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNS 138
P +QGRL+SY DT I RLG NF++IP+N P N+QRD + NY PNS
Sbjct: 406 PLLQGRLYSYTDTQISRLGGPNFHEIPINRP-TCPYHNFQRDGMHRMGIDTNPANYEPNS 464
Query: 139 FKGPEPTP------RGAWSTYNA--TGDVKRYKTE-DEDNFSQPRILWSNVLDDAARDRM 189
P RG + +Y G+ R ++ + +S PR+ W + +
Sbjct: 465 INDNWPRETPPGPKRGGFESYQERVEGNKVRERSPSFGEYYSHPRLFW-LSQTPFEQRHI 523
Query: 190 TTNIASVL-KLAAPFIQ 205
+ L K+ P+I+
Sbjct: 524 VDGFSFELSKVVRPYIR 540
Score = 72.8 bits (179), Expect = 2e-15
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 1 MAIDNQNGAPNYYPNSFKGPEPTP------RGAWSTYNA--TGDVKRYKTE-DEDNFSQP 51
+ NY PNS P RG + +Y G+ R ++ + +S P
Sbjct: 449 HRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSPSFGEYYSHP 508
Query: 52 RILWSNVLDDAARDRMTTNIASVL-KLAAPFIQGR 85
R+ W + + + L K+ P+I+ R
Sbjct: 509 RLFW-LSQTPFEQRHIVDGFSFELSKVVRPYIRER 542
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase,
peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Length = 688
Score = 136 bits (344), Expect = 2e-37
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 13/137 (9%)
Query: 80 PFIQGRLHSYIDTHIHRL-GANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNS 138
P +QGRL+SY+DT ++R G NF Q+P+N P V N RD +Y P+
Sbjct: 349 PLLQGRLYSYLDTQLNRHRGPNFEQLPINRP-VSGVHNNHRDGQGQAWIHKNIHHYSPSY 407
Query: 139 FKGPEPTPRGAWS--------TYNATGDVKRYKTE-DEDNFSQPRILWSNVLDDAARDRM 189
P A+G + R + +D+++QPR+ + N L + +
Sbjct: 408 LNKGYPAQANQTVGRGFFTTPGRTASGVLNRELSATFDDHYTQPRLFF-NSLTPVEQQFV 466
Query: 190 TTNIASVL-KLAAPFIQ 205
I + ++
Sbjct: 467 INAIRFEASHVTNEQVK 483
Score = 72.0 bits (177), Expect = 5e-15
Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 11/95 (11%)
Query: 1 MAIDNQNGAPNYYPNSFKGPEPTPRGAWS--------TYNATGDVKRYKTE-DEDNFSQP 51
+Y P+ P A+G + R + +D+++QP
Sbjct: 392 GQAWIHKNIHHYSPSYLNKGYPAQANQTVGRGFFTTPGRTASGVLNRELSATFDDHYTQP 451
Query: 52 RILWSNVLDDAARDRMTTNIASVL-KLAAPFIQGR 85
R+ + N L + + I + ++
Sbjct: 452 RLFF-NSLTPVEQQFVINAIRFEASHVTNEQVKKN 485
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium
janthinellum} PDB: 2xf2_A*
Length = 688
Score = 112 bits (281), Expect = 5e-29
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 12/129 (9%)
Query: 80 PFIQGRLHSYIDTHIHRL-GANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNS 138
P +QGRL SY+DT ++R G NF Q+P+N P R + N RD + Y PN+
Sbjct: 341 PLLQGRLFSYLDTQLNRHGGPNFEQLPINRP-RAPIHNNNRDGAGQMFIPLDPNAYSPNT 399
Query: 139 FKGPEPTPRGAWS--------TYNATGDVKRYKTE-DEDNFSQPRILWSNVLDDAARDRM 189
P A+G ++R + E+N+SQPR+ W N L +A ++ +
Sbjct: 400 ENKGSPKQANETVGKGFFTAPERTASGKLQRTLSTTFENNWSQPRLFW-NSLVNAQKEFI 458
Query: 190 TTNIASVLK 198
Sbjct: 459 VDAXRFETS 467
Score = 66.9 bits (163), Expect = 2e-13
Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 11/109 (10%)
Query: 1 MAIDNQNGAPNYYPNSFKGPEPTPRGAWS--------TYNATGDVKRYKTE-DEDNFSQP 51
+ Y PN+ P A+G ++R + E+N+SQP
Sbjct: 384 GQMFIPLDPNAYSPNTENKGSPKQANETVGKGFFTAPERTASGKLQRTLSTTFENNWSQP 443
Query: 52 RILWSNVLDDAARDRMTTNIASVL-KLAAPFIQGRLHSYIDTHIHRLGA 99
R+ W N L +A ++ + +++ ++ + ++ L
Sbjct: 444 RLFW-NSLVNAQKEFIVDAXRFETSNVSSSVVRDDVIIQLNRISDNLAT 491
>1u5u_A Allene oxide synthase-lipoxygenase protein; catalase, heme,
eicosanoid, fusion PR lyase; HET: HEM; 2.00A {Plexaura
homomalla} SCOP: e.5.1.2
Length = 374
Score = 49.4 bits (118), Expect = 2e-07
Identities = 4/29 (13%), Positives = 8/29 (27%)
Query: 79 APFIQGRLHSYIDTHIHRLGANFNQIPVN 107
+ R+ Y R + +P
Sbjct: 343 NSIGELRVAVYTWVQHLRKLKIGSLVPAG 371
>3e4w_A Putative uncharacterized protein; heme enzyme, catalase,
peroxidase, oxidoreductase; HET: HEM; 1.80A
{Mycobacterium avium subsp} PDB: 3e4y_A*
Length = 320
Score = 47.6 bits (114), Expect = 6e-07
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 80 PFIQGRLHSYIDTHIHRLGAN-FNQIP 105
P ++ R Y + R G + Q P
Sbjct: 292 PVLRFRTLVYSASVKLRTGVDRGAQAP 318
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.043
Identities = 19/179 (10%), Positives = 52/179 (29%), Gaps = 32/179 (17%)
Query: 53 ILWSNVLDDAARDRMTTNIA-SVLKLAAPFIQGRLHS-YIDTHIHRLG-ANFNQIPVNCP 109
++W +V+ + S+++ + S Y++ + ++ V+
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH- 452
Query: 110 YRVRVANYQRD-APMAIDN--------------QNGAPNYYPNSF----------KGPEP 144
Y + D P +D + F +
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 145 TPRGAWSTYNATGDVKRYK---TEDEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLA 200
+ S N +K YK +++ + + + L + + + +L++A
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.63
Identities = 23/197 (11%), Positives = 49/197 (24%), Gaps = 53/197 (26%)
Query: 45 EDNFSQPRILWSN--VLDD---AARDRMTTNIA------SVLKLAAPFI--------QGR 85
E P + L + T A + +L F+ +
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK 76
Query: 86 LHSYID------THIHR--LGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNG-APNYYP 136
+ + T L N ++ A ++ + NY
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGN----DIHA----LAAKLLQENDTTLVKTKELIKNYIT 128
Query: 137 NSFKGPEPTPRGAWST-YNA--TGDVKRYKT-----EDEDNFSQPRILWSNVLDDAARDR 188
P + + S + A G+ + +D F + R L+
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY---------QT 179
Query: 189 MTTNIASVLKLAAPFIQ 205
+ ++K +A +
Sbjct: 180 YHVLVGDLIKFSAETLS 196
Score = 27.7 bits (61), Expect = 3.1
Identities = 23/157 (14%), Positives = 44/157 (28%), Gaps = 49/157 (31%)
Query: 46 DNFSQPRILWSNVLDDAARDRMTTNIASVLKLAAPFIQGRLHSYIDTHIHRLGANFNQIP 105
+ +W+ D+ +D +I ++ P ++ IH G +I
Sbjct: 1637 KTSKAAQDVWNRA-DNHFKDTYGFSILDIVI-NNP---------VNLTIHFGGEKGKRIR 1685
Query: 106 VNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNS--FKGPEPTPRGAWSTYNATGDVKRYK 163
N Y + D + + N + S F+ + G +
Sbjct: 1686 EN--YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK-------------GLLSA-- 1728
Query: 164 TEDEDNFSQPRILWSNVLDDAARDRMTTNIA--SVLK 198
T+ F+QP + A LK
Sbjct: 1729 TQ----FTQPAL-------------TLMEKAAFEDLK 1748
Score = 26.2 bits (57), Expect = 9.4
Identities = 14/67 (20%), Positives = 17/67 (25%), Gaps = 36/67 (53%)
Query: 40 YKTEDEDNFSQPRILWSNVLDDAARDRMTTNIA--SVLK------LAAPFIQGRLHSYID 91
T+ F+QP + A LK A F G HS
Sbjct: 1727 SATQ----FTQPAL-------------TLMEKAAFEDLKSKGLIPADATFA-G--HS--- 1763
Query: 92 THIHRLG 98
LG
Sbjct: 1764 -----LG 1765
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.410
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,215,807
Number of extensions: 181936
Number of successful extensions: 417
Number of sequences better than 10.0: 1
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 34
Length of query: 205
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 116
Effective length of database: 4,216,824
Effective search space: 489151584
Effective search space used: 489151584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)