RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8829
(205 letters)
>d1dgfa_ e.5.1.1 (A:) Catalase I {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 143 bits (362), Expect = 3e-41
Identities = 68/130 (52%), Positives = 84/130 (64%), Gaps = 1/130 (0%)
Query: 77 LAAPFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAID-NQNGAPNYY 135
+QGRL +Y DTH HRLG N+ IPVNCPYR RVANYQRD PM + NQ GAPNYY
Sbjct: 342 SPDKMLQGRLFAYPDTHRHRLGPNYLHIPVNCPYRARVANYQRDGPMCMQDNQGGAPNYY 401
Query: 136 PNSFKGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILWSNVLDDAARDRMTTNIAS 195
PNSF PE P + +G+V+R+ T ++DN +Q R + NVL++ R R+ NIA
Sbjct: 402 PNSFGAPEQQPSALEHSIQYSGEVRRFNTANDDNVTQVRAFYVNVLNEEQRKRLCENIAG 461
Query: 196 VLKLAAPFIQ 205
LK A FIQ
Sbjct: 462 HLKDAQIFIQ 471
Score = 87.7 bits (217), Expect = 6e-21
Identities = 38/86 (44%), Positives = 51/86 (59%)
Query: 4 DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILWSNVLDDAA 63
DNQ GAPNYYPNSF PE P + +G+V+R+ T ++DN +Q R + NVL++
Sbjct: 392 DNQGGAPNYYPNSFGAPEQQPSALEHSIQYSGEVRRFNTANDDNVTQVRAFYVNVLNEEQ 451
Query: 64 RDRMTTNIASVLKLAAPFIQGRLHSY 89
R R+ NIA LK A FIQ +
Sbjct: 452 RKRLCENIAGHLKDAQIFIQKKAVKN 477
>d1m7sa_ e.5.1.1 (A:) Catalase I {Pseudomonas syringae [TaxId: 317]}
Length = 484
Score = 126 bits (318), Expect = 5e-35
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 2/126 (1%)
Query: 80 PFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSF 139
+QGR+ SY DT ++RLGAN +PVN P +V V N +D + + NY P+
Sbjct: 323 RLLQGRVFSYADTQMYRLGANGLSLPVNQP-KVAVNNGNQDGALNTGHTTSGVNYEPSRL 381
Query: 140 KGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILWSNVLDDAARDRMTTNIASVLKL 199
+ + +S +G ++ K E NF Q L+ + + L
Sbjct: 382 EPRPADDKARYSELPLSGTTQQAKITREQNFKQAGDLY-RSYSAKEKTDLVQKFGESLAD 440
Query: 200 AAPFIQ 205
+
Sbjct: 441 TLTESK 446
Score = 79.6 bits (196), Expect = 4e-18
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 1/89 (1%)
Query: 1 MAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILWSNVLD 60
+ + NY P+ + + +S +G ++ K E NF Q L+
Sbjct: 365 LNTGHTTSGVNYEPSRLEPRPADDKARYSELPLSGTTQQAKITREQNFKQAGDLY-RSYS 423
Query: 61 DAARDRMTTNIASVLKLAAPFIQGRLHSY 89
+ + L + + SY
Sbjct: 424 AKEKTDLVQKFGESLADTLTESKNIMLSY 452
>d1si8a_ e.5.1.1 (A:) Catalase I {Enterococcus faecalis [TaxId:
1351]}
Length = 474
Score = 125 bits (316), Expect = 8e-35
Identities = 45/128 (35%), Positives = 71/128 (55%), Gaps = 5/128 (3%)
Query: 80 PFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSF 139
+QGRL +Y D H HR+GAN +Q+P+N + V NYQ+D M +N N NY PNS+
Sbjct: 325 KLLQGRLFAYGDAHRHRVGANSHQLPINQA-KAPVNNYQKDGNMRFNNGNSEINYEPNSY 383
Query: 140 K-GPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILWSNVLDDAARDRMTTNIASVL- 197
P+ P S++ G+V Y ++D+F+Q L+ N+L ++ + NIA+ L
Sbjct: 384 TETPKEDPTAKISSFEVEGNVGNYSY-NQDHFTQANALY-NLLPSEEKENLINNIAASLG 441
Query: 198 KLAAPFIQ 205
++ I
Sbjct: 442 QVKNQEII 449
Score = 72.6 bits (178), Expect = 9e-16
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 1 MAIDNQNGAPNYYPNSFK-GPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILWSNVL 59
M +N N NY PNS+ P+ P S++ G+V Y ++D+F+Q L+ N+L
Sbjct: 367 MRFNNGNSEINYEPNSYTETPKEDPTAKISSFEVEGNVGNYSY-NQDHFTQANALY-NLL 424
Query: 60 DDAARDRMTTNIASVL-KLAAPFIQGRLHSY 89
++ + NIA+ L ++ I R
Sbjct: 425 PSEEKENLINNIAASLGQVKNQEIIARQIDL 455
>d1gwea_ e.5.1.1 (A:) Catalase I {Micrococcus lysodeikticus [TaxId:
1270]}
Length = 498
Score = 126 bits (317), Expect = 9e-35
Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 5/130 (3%)
Query: 80 PFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSF 139
+ GR +Y D ++R+GA+ NQ+PVN P + V NY + M D+ Y PNS
Sbjct: 329 RMLLGRAFAYHDAQLYRVGAHVNQLPVNRP-KNAVHNYAFEGQMWYDHTGDRSTYVPNSN 387
Query: 140 KGPEPTPRGAW-STYNATGDVKRY---KTEDEDNFSQPRILWSNVLDDAARDRMTTNIAS 195
G + A G + R D+D+F Q L V D RD +A
Sbjct: 388 GDSWSDETGPVDDGWEADGTLTREAQALRADDDDFGQAGTLVREVFSDQERDDFVETVAG 447
Query: 196 VLKLAAPFIQ 205
LK +Q
Sbjct: 448 ALKGVRQDVQ 457
Score = 75.0 bits (184), Expect = 1e-16
Identities = 25/93 (26%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 1 MAIDNQNGAPNYYPNSFKGPEPTPRGAW-STYNATGDVKRY---KTEDEDNFSQPRILWS 56
M D+ Y PNS G + A G + R D+D+F Q L
Sbjct: 371 MWYDHTGDRSTYVPNSNGDSWSDETGPVDDGWEADGTLTREAQALRADDDDFGQAGTLVR 430
Query: 57 NVLDDAARDRMTTNIASVLKLAAPFIQGRLHSY 89
V D RD +A LK +Q R Y
Sbjct: 431 EVFSDQERDDFVETVAGALKGVRQDVQARAFEY 463
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 125 bits (314), Expect = 2e-34
Identities = 50/128 (39%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Query: 80 PFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAID-NQNGAPNYYPNS 138
+QGRL SY D H +RLG N +QIPVN P + NY RD M +D N Y PNS
Sbjct: 325 KMLQGRLFSYGDAHRYRLGVNHHQIPVNAP-KCPFHNYHRDGAMRVDGNSGNGITYEPNS 383
Query: 139 FKGPEPTPRGAWSTYNATGDVKRYK-TEDEDNFSQPRILWSNVLDDAARDRMTTNIASVL 197
+ P + G + EDED FSQPR L+ +L D RM IA L
Sbjct: 384 GGVFQEQPDFKEPPLSIEGAADHWNHREDEDYFSQPRALY-ELLSDDEHQRMFARIAGEL 442
Query: 198 KLAAPFIQ 205
A+ Q
Sbjct: 443 SQASKETQ 450
Score = 71.9 bits (176), Expect = 2e-15
Identities = 29/91 (31%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 1 MAID-NQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYK-TEDEDNFSQPRILWSNV 58
M +D N Y PNS + P + G + EDED FSQPR L+ +
Sbjct: 367 MRVDGNSGNGITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDYFSQPRALY-EL 425
Query: 59 LDDAARDRMTTNIASVLKLAAPFIQGRLHSY 89
L D RM IA L A+ Q R
Sbjct: 426 LSDDEHQRMFARIAGELSQASKETQQRQIDL 456
>d1qwla_ e.5.1.1 (A:) Catalase I {Helicobacter pylori [TaxId: 210]}
Length = 491
Score = 120 bits (303), Expect = 7e-33
Identities = 40/134 (29%), Positives = 56/134 (41%), Gaps = 10/134 (7%)
Query: 80 PFIQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSF 139
+QGRL SY DTH +RLG N+ QIPVN P R + RD M NY P+S
Sbjct: 330 RMLQGRLFSYGDTHRYRLGVNYPQIPVNKP-RCPFHSSSRDGYMQNGYYGSLQNYTPSSL 388
Query: 140 KGPEPTPRGAWSTYNATGDVK-------RYKTEDEDNFSQPRILWSNVLDDAARDRMTTN 192
G + +N K Y+ +D D ++QP + L ++R+
Sbjct: 389 PGYKEDKSARDPKFNLAHIEKEFEVWNWDYRADDSDYYTQPGDYY-RSLPADEKERLHDT 447
Query: 193 IASVL-KLAAPFIQ 205
I L + I
Sbjct: 448 IGESLAHVTHKEIV 461
Score = 68.8 bits (168), Expect = 2e-14
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 9/97 (9%)
Query: 1 MAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVK-------RYKTEDEDNFSQPRI 53
M NY P+S G + +N K Y+ +D D ++QP
Sbjct: 372 MQNGYYGSLQNYTPSSLPGYKEDKSARDPKFNLAHIEKEFEVWNWDYRADDSDYYTQPGD 431
Query: 54 LWSNVLDDAARDRMTTNIASVL-KLAAPFIQGRLHSY 89
+ L ++R+ I L + I + +
Sbjct: 432 YY-RSLPADEKERLHDTIGESLAHVTHKEIVDKQLEH 467
>d1a4ea_ e.5.1.1 (A:) Catalase I {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 488
Score = 112 bits (282), Expect = 6e-30
Identities = 41/134 (30%), Positives = 56/134 (41%), Gaps = 8/134 (5%)
Query: 80 PFIQGRLHSYIDTHIHRLGANFNQIPVNCPYR-VRVANYQRDAPMAID-NQNGAPNYYPN 137
P +Q RL SY D H +RLG NF+QIPVNCPY RD PM ++ N P Y N
Sbjct: 332 PVLQARLFSYADAHRYRLGPNFHQIPVNCPYASKFFNPAIRDGPMNVNGNFGSEPTYLAN 391
Query: 138 SFKGPEPTPRGAWSTYNAT--GDVKRYK---TEDEDNFSQPRILWSNVLDDAA-RDRMTT 191
+ G Y + + +F Q R L+ + + +
Sbjct: 392 DKSYTYIQQDRPIQQHQEVWNGPAIPYHWATSPGDVDFVQARNLYRVLGKQPGQQKNLAY 451
Query: 192 NIASVLKLAAPFIQ 205
NI ++ A P IQ
Sbjct: 452 NIGIHVEGACPQIQ 465
Score = 61.5 bits (149), Expect = 6e-12
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 6/92 (6%)
Query: 4 DNQNGAPNYYPNSFKGPEPTPRGAWSTYNAT--GDVKRYK---TEDEDNFSQPRILWSNV 58
N P Y N + G Y + + +F Q R L+ +
Sbjct: 380 GNFGSEPTYLANDKSYTYIQQDRPIQQHQEVWNGPAIPYHWATSPGDVDFVQARNLYRVL 439
Query: 59 LDDAA-RDRMTTNIASVLKLAAPFIQGRLHSY 89
+ + NI ++ A P IQ R++
Sbjct: 440 GKQPGQQKNLAYNIGIHVEGACPQIQQRVYDM 471
>d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII
[TaxId: 562]}
Length = 571
Score = 107 bits (269), Expect = 5e-28
Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 13/137 (9%)
Query: 80 PFIQGRLHSYIDTHIHRLGA-NFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNS 138
P +QGRL SY DT I RLG NF++IP+N P N+QRD + NY PNS
Sbjct: 380 PLLQGRLFSYTDTQISRLGGPNFHEIPINRP-TCPYHNFQRDGMHRMGIDTNPANYEPNS 438
Query: 139 FKGPEPTP------RGAWSTYNA--TGDVKRYKTE-DEDNFSQPRILWSNVLDDAARDRM 189
P RG + +Y G+ R ++ + +S PR+ W + +
Sbjct: 439 INDNWPRETPPGPKRGGFESYQERVEGNKVRERSPSFGEYYSHPRLFW-LSQTPFEQRHI 497
Query: 190 TTNIA-SVLKLAAPFIQ 205
+ + K+ P+I+
Sbjct: 498 VDGFSFELSKVVRPYIR 514
Score = 61.9 bits (150), Expect = 5e-12
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 11/99 (11%)
Query: 1 MAIDNQNGAPNYYPNSFKGPEPTP------RGAWSTYNA--TGDVKRYKTE-DEDNFSQP 51
+ NY PNS P RG + +Y G+ R ++ + +S P
Sbjct: 423 HRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSPSFGEYYSHP 482
Query: 52 RILWSNVLDDAARDRMTTNIA-SVLKLAAPFIQGRLHSY 89
R+ W + + + + K+ P+I+ R+
Sbjct: 483 RLFW-LSQTPFEQRHIVDGFSFELSKVVRPYIRERVVDQ 520
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 95
Score = 26.0 bits (57), Expect = 1.5
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 18 KGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILWSNVLDDAARDRMTTNIASVLK 76
K E T S ++TG+ T + D R++ + + A+ + I+ L
Sbjct: 13 KASEATVCANNSKVSSTGEKVVLWTREAD-----RVILTMCQEQGAQPHTFSVISQQLG 66
Score = 26.0 bits (57), Expect = 1.5
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 140 KGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILWSNVLDDAARDRMTTNIASVLK 198
K E T S ++TG+ T + D R++ + + A+ + I+ L
Sbjct: 13 KASEATVCANNSKVSSTGEKVVLWTREAD-----RVILTMCQEQGAQPHTFSVISQQLG 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.410
Gapped
Lambda K H
0.267 0.0403 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 778,857
Number of extensions: 34880
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 20
Length of query: 205
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,295,466
Effective search space: 160637784
Effective search space used: 160637784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)