BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8830
(70 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NWL|A Chain A, The Crystal Structure Of The P212121 Form Of Bovine Liver
Catalase Previously Characterized By Electron Microscopy
pdb|3NWL|B Chain B, The Crystal Structure Of The P212121 Form Of Bovine Liver
Catalase Previously Characterized By Electron Microscopy
pdb|3NWL|C Chain C, The Crystal Structure Of The P212121 Form Of Bovine Liver
Catalase Previously Characterized By Electron Microscopy
pdb|3NWL|D Chain D, The Crystal Structure Of The P212121 Form Of Bovine Liver
Catalase Previously Characterized By Electron Microscopy
Length = 527
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 26/42 (61%)
Query: 3 IDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNYNN 44
+DNQ GAPNYYPNSF PE P + +GDV+R N N
Sbjct: 395 MDNQGGAPNYYPNSFSAPEHQPSALEHRTHFSGDVQRFNSAN 436
>pdb|7CAT|A Chain A, The Nadph Binding Site On Beef Liver Catalase
pdb|8CAT|A Chain A, The Nadph Binding Site On Beef Liver Catalase
pdb|8CAT|B Chain B, The Nadph Binding Site On Beef Liver Catalase
pdb|4BLC|A Chain A, The Structure Of Orthorhombic Crystals Of Beef Liver
Catalase
pdb|4BLC|B Chain B, The Structure Of Orthorhombic Crystals Of Beef Liver
Catalase
pdb|4BLC|C Chain C, The Structure Of Orthorhombic Crystals Of Beef Liver
Catalase
pdb|4BLC|D Chain D, The Structure Of Orthorhombic Crystals Of Beef Liver
Catalase
pdb|1TGU|A Chain A, The Crystal Structure Of Bovine Liver Catalase Without
Nadph
pdb|1TGU|B Chain B, The Crystal Structure Of Bovine Liver Catalase Without
Nadph
pdb|1TGU|C Chain C, The Crystal Structure Of Bovine Liver Catalase Without
Nadph
pdb|1TGU|D Chain D, The Crystal Structure Of Bovine Liver Catalase Without
Nadph
pdb|1TH2|A Chain A, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With Azide
pdb|1TH2|B Chain B, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With Azide
pdb|1TH2|C Chain C, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With Azide
pdb|1TH2|D Chain D, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With Azide
pdb|1TH3|A Chain A, Crystal Structure Of Nadph Depleted Bovine Live Catalase
Complexed With Cyanide
pdb|1TH3|B Chain B, Crystal Structure Of Nadph Depleted Bovine Live Catalase
Complexed With Cyanide
pdb|1TH3|C Chain C, Crystal Structure Of Nadph Depleted Bovine Live Catalase
Complexed With Cyanide
pdb|1TH3|D Chain D, Crystal Structure Of Nadph Depleted Bovine Live Catalase
Complexed With Cyanide
pdb|1TH4|A Chain A, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With 3-Amino-1,2,4-Triazole
pdb|1TH4|B Chain B, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With 3-Amino-1,2,4-Triazole
pdb|1TH4|C Chain C, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With 3-Amino-1,2,4-Triazole
pdb|1TH4|D Chain D, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With 3-Amino-1,2,4-Triazole
pdb|7CAT|B Chain B, The Nadph Binding Site On Beef Liver Catalase
Length = 506
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 26/42 (61%)
Query: 3 IDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNYNN 44
+DNQ GAPNYYPNSF PE P + +GDV+R N N
Sbjct: 394 MDNQGGAPNYYPNSFSAPEHQPSALEHRTHFSGDVQRFNSAN 435
>pdb|3RGP|A Chain A, Structural And Kinetic Analysis Of The Beef Liver Catalase
Complexed With Nitric Oxide
pdb|3RGP|B Chain B, Structural And Kinetic Analysis Of The Beef Liver Catalase
Complexed With Nitric Oxide
pdb|3RGP|C Chain C, Structural And Kinetic Analysis Of The Beef Liver Catalase
Complexed With Nitric Oxide
pdb|3RGP|D Chain D, Structural And Kinetic Analysis Of The Beef Liver Catalase
Complexed With Nitric Oxide
pdb|3RGS|A Chain A, Structural And Kinetic Analysis Of The Beef Liver Catalase
With The Ammonia As A Ligand
pdb|3RGS|B Chain B, Structural And Kinetic Analysis Of The Beef Liver Catalase
With The Ammonia As A Ligand
pdb|3RGS|C Chain C, Structural And Kinetic Analysis Of The Beef Liver Catalase
With The Ammonia As A Ligand
pdb|3RGS|D Chain D, Structural And Kinetic Analysis Of The Beef Liver Catalase
With The Ammonia As A Ligand
pdb|3RE8|A Chain A, Structural And Kinetic Analysis Of The Beef Liver Catalase
Interacting With Nitric Oxide
pdb|3RE8|B Chain B, Structural And Kinetic Analysis Of The Beef Liver Catalase
Interacting With Nitric Oxide
pdb|3RE8|C Chain C, Structural And Kinetic Analysis Of The Beef Liver Catalase
Interacting With Nitric Oxide
pdb|3RE8|D Chain D, Structural And Kinetic Analysis Of The Beef Liver Catalase
Interacting With Nitric Oxide
Length = 499
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 26/42 (61%)
Query: 3 IDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNYNN 44
+DNQ GAPNYYPNSF PE P + +GDV+R N N
Sbjct: 392 MDNQGGAPNYYPNSFSAPEHQPSALEHRTHFSGDVQRFNSAN 433
>pdb|1QQW|A Chain A, Crystal Structure Of Human Erythrocyte Catalase
pdb|1QQW|B Chain B, Crystal Structure Of Human Erythrocyte Catalase
pdb|1QQW|C Chain C, Crystal Structure Of Human Erythrocyte Catalase
pdb|1QQW|D Chain D, Crystal Structure Of Human Erythrocyte Catalase
pdb|1F4J|A Chain A, Structure Of Tetragonal Crystals Of Human Erythrocyte
Catalase
pdb|1F4J|B Chain B, Structure Of Tetragonal Crystals Of Human Erythrocyte
Catalase
pdb|1F4J|C Chain C, Structure Of Tetragonal Crystals Of Human Erythrocyte
Catalase
pdb|1F4J|D Chain D, Structure Of Tetragonal Crystals Of Human Erythrocyte
Catalase
Length = 527
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 4 DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNYNN 44
DNQ GAPNYYPNSF PE P + +G+V+R N N
Sbjct: 396 DNQGGAPNYYPNSFGAPEQQPSALEHSIQYSGEVRRFNTAN 436
>pdb|1DGG|A Chain A, Human Erythrocyte Catalse Cyanide Complex
pdb|1DGG|B Chain B, Human Erythrocyte Catalse Cyanide Complex
pdb|1DGG|C Chain C, Human Erythrocyte Catalse Cyanide Complex
pdb|1DGG|D Chain D, Human Erythrocyte Catalse Cyanide Complex
pdb|1DGF|A Chain A, Human Erythrocyte Catalase
pdb|1DGF|B Chain B, Human Erythrocyte Catalase
pdb|1DGF|C Chain C, Human Erythrocyte Catalase
pdb|1DGF|D Chain D, Human Erythrocyte Catalase
Length = 497
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 4 DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNYNN 44
DNQ GAPNYYPNSF PE P + +G+V+R N N
Sbjct: 392 DNQGGAPNYYPNSFGAPEQQPSALEHSIQYSGEVRRFNTAN 432
>pdb|1DGH|A Chain A, Human Erythrocyte Catalase 3-Amino-1,2,4-Triazole Complex
pdb|1DGH|C Chain C, Human Erythrocyte Catalase 3-Amino-1,2,4-Triazole Complex
pdb|1DGB|A Chain A, Human Erythrocyte Catalase
pdb|1DGB|B Chain B, Human Erythrocyte Catalase
pdb|1DGB|C Chain C, Human Erythrocyte Catalase
pdb|1DGB|D Chain D, Human Erythrocyte Catalase
Length = 498
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 4 DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNYNN 44
DNQ GAPNYYPNSF PE P + +G+V+R N N
Sbjct: 393 DNQGGAPNYYPNSFGAPEQQPSALEHSIQYSGEVRRFNTAN 433
>pdb|1DGH|B Chain B, Human Erythrocyte Catalase 3-Amino-1,2,4-Triazole Complex
pdb|1DGH|D Chain D, Human Erythrocyte Catalase 3-Amino-1,2,4-Triazole Complex
Length = 498
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 4 DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNYNN 44
DNQ GAPNYYPNSF PE P + +G+V+R N N
Sbjct: 393 DNQGGAPNYYPNSFGAPEQQPSALEHSIQYSGEVRRFNTAN 433
>pdb|1SI8|A Chain A, Crystal Structure Of E. Faecalis Catalase
pdb|1SI8|B Chain B, Crystal Structure Of E. Faecalis Catalase
pdb|1SI8|C Chain C, Crystal Structure Of E. Faecalis Catalase
pdb|1SI8|D Chain D, Crystal Structure Of E. Faecalis Catalase
Length = 484
Score = 28.9 bits (63), Expect = 0.80, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 1 MAIDNQNGAPNYYPNSF-KGPEPTPRGAWSTYNATGDVKRGNYN 43
M +N N NY PNS+ + P+ P S++ G+V +YN
Sbjct: 370 MRFNNGNSEINYEPNSYTETPKEDPTAKISSFEVEGNVGNYSYN 413
>pdb|3LIZ|H Chain H, Crystal Structure Of Bla G 2 Complexed With Fab 4c3
Length = 253
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 1 MAIDNQNGAPNYYPNSFKG 19
+A N NGA YYP++ KG
Sbjct: 48 VATINSNGASTYYPDTVKG 66
>pdb|2CWT|A Chain A, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWT|B Chain B, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWU|A Chain A, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWU|B Chain B, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|A Chain A, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|B Chain B, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2D1W|A Chain A, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
pdb|2D1W|B Chain B, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
Length = 638
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 21 EPTPRGAWSTYNATGDVKRGNYNN 44
+P+P +W Y ATG+ G Y N
Sbjct: 286 DPSPIRSWQNYFATGEYLVGQYAN 309
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.133 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,702,171
Number of Sequences: 62578
Number of extensions: 104140
Number of successful extensions: 121
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 11
length of query: 70
length of database: 14,973,337
effective HSP length: 40
effective length of query: 30
effective length of database: 12,470,217
effective search space: 374106510
effective search space used: 374106510
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)