BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8830
(70 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P00432|CATA_BOVIN Catalase OS=Bos taurus GN=CAT PE=1 SV=3
Length = 527
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 26/42 (61%)
Query: 3 IDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNYNN 44
+DNQ GAPNYYPNSF PE P + +GDV+R N N
Sbjct: 395 MDNQGGAPNYYPNSFSAPEHQPSALEHRTHFSGDVQRFNSAN 436
>sp|P04040|CATA_HUMAN Catalase OS=Homo sapiens GN=CAT PE=1 SV=3
Length = 527
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 4 DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNYNN 44
DNQ GAPNYYPNSF PE P + +G+V+R N N
Sbjct: 396 DNQGGAPNYYPNSFGAPEQQPSALEHSIQYSGEVRRFNTAN 436
>sp|Q5RF10|CATA_PONAB Catalase OS=Pongo abelii GN=CAT PE=2 SV=3
Length = 527
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 4 DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGN 41
DNQ GAPNYYPNSF PE P + +G+V+R N
Sbjct: 396 DNQGGAPNYYPNSFGAPEQQPSALEHSTQCSGEVQRFN 433
>sp|O62839|CATA_PIG Catalase OS=Sus scrofa GN=CAT PE=1 SV=4
Length = 527
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 24/41 (58%)
Query: 4 DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNYNN 44
DNQ GAPNYYPNSF PE T +GDV+R N N
Sbjct: 396 DNQGGAPNYYPNSFSAPEQTHSALEHCTRYSGDVQRFNSAN 436
>sp|Q9PWF7|CATA_GLARU Catalase OS=Glandirana rugosa GN=cat PE=2 SV=3
Length = 528
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 23/38 (60%)
Query: 4 DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGN 41
DNQ GAPNY+PNSF PE P S + + DV R N
Sbjct: 396 DNQGGAPNYFPNSFSAPENQPAARESKFRVSADVARYN 433
>sp|P17336|CATA_DROME Catalase OS=Drosophila melanogaster GN=Cat PE=1 SV=2
Length = 506
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 4 DNQNGAPNYYPNSFKGPEPTP--RGAWSTYNATGDVKRGNYNNG 45
DNQ+GAPNY+PNSF GP+ P R S TGDV R Y++G
Sbjct: 394 DNQDGAPNYFPNSFNGPQECPRARALSSCCPVTGDVYR--YSSG 435
>sp|Q2I6W4|CATA_CALJA Catalase OS=Callithrix jacchus GN=CAT PE=2 SV=3
Length = 527
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 4 DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNYNN 44
DNQ GAPNYYPNSF PE P + + +V+R N N
Sbjct: 396 DNQGGAPNYYPNSFGAPEHQPSALEHSTRCSAEVQRFNTAN 436
>sp|Q9PT92|CATA_DANRE Catalase OS=Danio rerio GN=cat PE=2 SV=1
Length = 526
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 23/38 (60%)
Query: 4 DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGN 41
DNQ GAPNYYPNSF P+ PR S + DV R N
Sbjct: 396 DNQGGAPNYYPNSFSAPDVQPRFLESKCKVSPDVARYN 433
>sp|P04762|CATA_RAT Catalase OS=Rattus norvegicus GN=Cat PE=1 SV=3
Length = 527
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 22/41 (53%)
Query: 4 DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNYNN 44
DNQ GAPNYYPNSF PE + DVKR N N
Sbjct: 396 DNQGGAPNYYPNSFSAPEQQGSALEHHSQCSADVKRFNSAN 436
>sp|P24270|CATA_MOUSE Catalase OS=Mus musculus GN=Cat PE=1 SV=4
Length = 527
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 22/41 (53%)
Query: 4 DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNYNN 44
DNQ GAPNYYPNSF PE + DVKR N N
Sbjct: 396 DNQGGAPNYYPNSFSAPEQQRSALEHSVQCAVDVKRFNSAN 436
>sp|Q64405|CATA_CAVPO Catalase OS=Cavia porcellus GN=CAT PE=2 SV=4
Length = 527
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 22/38 (57%)
Query: 4 DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGN 41
DNQ GAPNYYPNSF P + T +GDV R N
Sbjct: 396 DNQGGAPNYYPNSFSAPVEQRQALEHTSRCSGDVGRYN 433
>sp|Q27487|CATA1_CAEEL Peroxisomal catalase 1 OS=Caenorhabditis elegans GN=ctl-2 PE=2 SV=3
Length = 500
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 1 MAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKR 39
MA DNQ APN++PNSF + P +T+ ATGDV R
Sbjct: 388 MAYDNQQHAPNFFPNSFNYGKTRPDVKDTTFPATGDVDR 426
>sp|O61235|CATA2_CAEEL Catalase-2 OS=Caenorhabditis elegans GN=ctl-1 PE=2 SV=3
Length = 497
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 1 MAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKR 39
MA ++Q APNY+PNSF+G ST+ TGDV R
Sbjct: 388 MAYESQGDAPNYFPNSFRGYRTRDDVKESTFQTTGDVDR 426
>sp|O97492|CATA_CANFA Catalase OS=Canis familiaris GN=CAT PE=1 SV=3
Length = 527
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 3 IDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNYNN 44
+DNQ GAPNYYPNSF PE + + DV+R N N
Sbjct: 395 LDNQGGAPNYYPNSFSAPEQQRCVLEHSSQCSPDVQRFNSAN 436
>sp|O77229|CATA_DICDI Catalase-A OS=Dictyostelium discoideum GN=catA PE=2 SV=2
Length = 496
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 1 MAIDNQNG-APNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNYNN 44
MA++ G PNY PNSF GPEP P A ++ +G R YN+
Sbjct: 374 MAVNGNGGKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNH 418
>sp|P90682|CATA_ASCSU Catalase OS=Ascaris suum GN=CAT PE=2 SV=2
Length = 541
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 1 MAID-NQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGN 41
A+D NQ G P Y+PNSF G S ++ +GDV R N
Sbjct: 391 FALDYNQGGMPTYHPNSFNGAIERTDVKESAWSVSGDVDRFN 432
>sp|P33569|BCA_STRVP Bromoperoxidase-catalase OS=Streptomyces venezuelae (strain ATCC
10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 /
PD 04745) GN=bca PE=1 SV=1
Length = 483
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 6 QNGAPNYYPNSFKGPEPTPRGAWSTYNATG 35
GA NY PNSF GP T R W TG
Sbjct: 376 HKGAKNYEPNSFGGPVQTDRPLWQPTPVTG 405
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.133 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,029,696
Number of Sequences: 539616
Number of extensions: 1279898
Number of successful extensions: 1469
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1450
Number of HSP's gapped (non-prelim): 20
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)