Query psy8830
Match_columns 70
No_of_seqs 123 out of 826
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 20:17:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8830.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8830hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m7s_A Catalase; beta barrel, 99.7 1.5E-17 5E-22 121.1 3.5 67 1-69 365-431 (484)
2 2isa_A Catalase; peroxidase, h 99.7 2.7E-17 9.2E-22 119.7 3.3 67 1-69 369-437 (483)
3 1si8_A Catalase; N-terminal AR 99.7 3E-17 1E-21 119.5 3.5 66 1-69 370-436 (484)
4 1dgf_A Catalase; heme, NADPH, 99.7 3E-17 1E-21 119.8 3.4 68 1-69 388-456 (497)
5 2j2m_A Catalase; functional cl 99.6 8.9E-17 3.1E-21 117.2 3.1 67 1-69 372-440 (491)
6 1gwe_A Catalase; oxidoreductas 99.6 2.1E-16 7.1E-21 115.5 4.2 68 1-69 376-447 (503)
7 1qwl_A KATA catalase; beta bar 99.6 1.5E-16 5.3E-21 116.2 2.3 67 1-69 372-445 (505)
8 2iuf_A Catalase; oxidoreductas 99.5 3.2E-15 1.1E-19 112.3 4.1 67 1-69 384-459 (688)
9 1a4e_A Catalase A; oxidoreduct 99.5 1.9E-15 6.5E-20 110.1 1.0 66 1-69 376-450 (488)
10 2xq1_A Peroxisomal catalase; o 99.5 4.1E-15 1.4E-19 108.8 1.8 65 1-69 385-459 (509)
11 3ttv_A Catalase HPII; heme ori 99.5 1.2E-14 4.1E-19 110.0 2.1 67 1-69 449-524 (753)
12 1sy7_A Catalase 1; heme oxidat 99.4 1.9E-13 6.4E-18 103.1 2.9 65 1-69 391-462 (715)
13 3ej6_A Catalase-3; heme, hydro 99.3 2.8E-13 9.6E-18 101.9 2.2 61 7-69 398-467 (688)
14 1hry_A Human SRY; DNA, DNA-bin 47.8 6.1 0.00021 20.8 0.8 15 52-67 39-53 (76)
15 3fgh_A Transcription factor A, 44.4 7.4 0.00025 20.0 0.8 15 52-67 33-47 (67)
16 4a3n_A Transcription factor SO 44.4 6.3 0.00022 20.3 0.5 15 52-67 37-51 (71)
17 1gt0_D Transcription factor SO 42.9 8.2 0.00028 20.5 0.9 15 52-67 37-51 (80)
18 1j46_A SRY, sex-determining re 41.9 8.6 0.0003 20.8 0.9 15 52-67 39-53 (85)
19 1wz6_A HMG-box transcription f 41.4 8.7 0.0003 20.5 0.8 15 52-67 42-56 (82)
20 2lef_A LEF-1 HMG, protein (lym 40.2 9.5 0.00033 20.6 0.9 15 52-67 37-51 (86)
21 1i11_A Transcription factor SO 40.1 8 0.00027 20.6 0.5 15 52-67 39-53 (81)
22 3u2b_C Transcription factor SO 39.6 8.3 0.00028 20.3 0.5 15 52-67 37-51 (79)
23 1ckt_A High mobility group 1 p 39.4 6.6 0.00023 20.3 0.1 15 52-67 38-52 (71)
24 2eqz_A High mobility group pro 38.6 9.9 0.00034 20.6 0.8 15 52-67 52-66 (86)
25 3f27_D Transcription factor SO 38.0 9.1 0.00031 20.4 0.5 15 52-67 41-55 (83)
26 2d7l_A WD repeat and HMG-box D 37.7 11 0.00037 20.6 0.9 19 48-67 37-55 (81)
27 2e6o_A HMG box-containing prot 37.3 9.4 0.00032 20.7 0.5 15 52-67 52-66 (87)
28 1aab_A High mobility group pro 36.7 9.8 0.00034 20.3 0.5 15 52-67 44-58 (83)
29 1v63_A Nucleolar transcription 36.1 12 0.00041 21.1 0.9 15 52-67 41-55 (101)
30 3o39_A Periplasmic protein rel 36.0 10 0.00036 22.1 0.6 14 54-68 86-99 (108)
31 2cs1_A PMS1 protein homolog 1; 35.4 12 0.00041 20.5 0.8 15 52-67 42-56 (92)
32 1hme_A High mobility group pro 35.3 9.1 0.00031 20.1 0.2 15 52-67 41-55 (77)
33 4euw_A Transcription factor SO 33.5 14 0.00049 20.9 0.9 15 52-67 64-78 (106)
34 2crj_A SWI/SNF-related matrix- 33.4 12 0.0004 20.6 0.5 15 52-67 42-56 (92)
35 2cto_A Novel protein; high mob 32.8 12 0.00042 21.1 0.5 20 47-67 38-60 (93)
36 1wgf_A Upstream binding factor 31.9 13 0.00044 20.3 0.5 15 52-67 55-69 (90)
37 2co9_A Thymus high mobility gr 29.1 19 0.00065 20.1 0.9 15 52-67 52-66 (102)
38 1k99_A Upstream binding factor 28.2 12 0.0004 21.0 -0.1 15 52-67 45-59 (99)
39 3oeo_A Spheroplast protein Y; 27.5 18 0.0006 21.7 0.6 14 54-68 102-115 (138)
40 1cg7_A Protein (NON histone pr 26.0 15 0.0005 20.2 0.1 15 52-67 55-69 (93)
41 2lhj_A High mobility group pro 25.3 16 0.00055 20.2 0.1 20 48-68 55-74 (97)
42 1v64_A Nucleolar transcription 24.8 20 0.0007 20.4 0.5 19 48-67 44-62 (108)
43 3itf_A Periplasmic adaptor pro 24.7 21 0.00072 21.8 0.6 14 54-68 114-127 (145)
44 1r8j_A KAIA; circadian clock p 24.7 17 0.00057 25.0 0.1 22 47-69 175-196 (289)
45 1l8y_A Upstream binding factor 24.5 20 0.00067 20.3 0.4 18 48-66 34-51 (91)
No 1
>1m7s_A Catalase; beta barrel, alpha helical domain, oxidoreductase; HET: HEM; 1.80A {Pseudomonas syringae} SCOP: e.5.1.1
Probab=99.68 E-value=1.5e-17 Score=121.09 Aligned_cols=67 Identities=13% Similarity=0.263 Sum_probs=59.9
Q ss_pred CcccCCCCCCeecCCCCCCCCCCCCCCCCcccccCceeecccCCCCCcccccchhhhccCChhhhcccc
Q psy8830 1 MAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNYNNGGLVLKSKREVQDRRKPAVPRTNLI 69 (70)
Q Consensus 1 M~~~n~~~~pnY~PNs~~g~~~~~~~~~~~~~~~g~~~r~~~~~~ddf~Q~ag~ly~r~m~~~er~~Lv 69 (70)
|++.|+++.|||+|||++++.+.+.+.++++.++|.+.++.+.++|||+| ||+|| |+|+++||+|||
T Consensus 365 m~~~~~~~~~~y~pn~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~q-~~~~~-~~~~~~~~~~l~ 431 (484)
T 1m7s_A 365 LNTGHTTSGVNYEPSRLEPRPADDKARYSELPLSGTTQQAKITREQNFKQ-AGDLY-RSYSAKEKTDLV 431 (484)
T ss_dssp TCCCCCCCSCCSSSCSSSCCCCCGGGCCCCCBCCSBEECCCCSCCCCSHH-HHHHH-HHSCHHHHHHHH
T ss_pred ccccCCCCCCCcCCCcCCCCCCCCCCCCCCeecccceeeecCCCcchhhh-HHHHH-HhCCHHHHHHHH
Confidence 66666688999999999988888888888899999999988777799999 99999 899999999997
No 2
>2isa_A Catalase; peroxidase, heme, oxidoreductase, iron, hydrogen peroxide; HET: OMT HEM; 1.97A {Vibrio salmonicida} PDB: 1m85_A* 1mqf_A* 1nm0_A* 2cag_A* 2cah_A* 1e93_A* 1h7k_A* 1h6n_A* 3hb6_A*
Probab=99.66 E-value=2.7e-17 Score=119.70 Aligned_cols=67 Identities=15% Similarity=0.103 Sum_probs=59.9
Q ss_pred Ccc-cCCCCCCeecCCCCCCCCCCCCCCCCcccccCceeecccC-CCCCcccccchhhhccCChhhhcccc
Q psy8830 1 MAI-DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNYN-NGGLVLKSKREVQDRRKPAVPRTNLI 69 (70)
Q Consensus 1 M~~-~n~~~~pnY~PNs~~g~~~~~~~~~~~~~~~g~~~r~~~~-~~ddf~Q~ag~ly~r~m~~~er~~Lv 69 (70)
|++ .|+++.|||+|||+++|.+.+.+.++++.++|.+.|+.+. ++|||+| ||+|| |+|+++||+|||
T Consensus 369 m~~~~~~~~~~~y~pn~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~q-~~~~~-~~~~~~~~~~l~ 437 (483)
T 2isa_A 369 MRVDGNFGSTLGYEPNDQGQWAEQPDFSEPPLNLDGAAAHWDHREDEDYFSQ-PGDLF-GLMTAEKQAILF 437 (483)
T ss_dssp SCCSCTTTTCCCCSSCTTCTTBCCGGGCCCCBCCCSCEECCCGGGCCCCSHH-HHHHH-HHSCHHHHHHHH
T ss_pred cccccCCCCcccCCCCcCCCccCCCCCCCCccccccceEeecccCCcchhhh-HHHHH-HcCCHHHHHHHH
Confidence 677 5778899999999998888888888889999999998875 6789999 99999 899999999997
No 3
>1si8_A Catalase; N-terminal ARM, anti-parallel beta-barrel, wrapping region, terminal helical region, tetramer, heme group, oxidoreducta; HET: HEM; 2.30A {Enterococcus faecalis} SCOP: e.5.1.1
Probab=99.66 E-value=3e-17 Score=119.45 Aligned_cols=66 Identities=29% Similarity=0.486 Sum_probs=58.7
Q ss_pred CcccCCCCCCeecCCCCCC-CCCCCCCCCCcccccCceeecccCCCCCcccccchhhhccCChhhhcccc
Q psy8830 1 MAIDNQNGAPNYYPNSFKG-PEPTPRGAWSTYNATGDVKRGNYNNGGLVLKSKREVQDRRKPAVPRTNLI 69 (70)
Q Consensus 1 M~~~n~~~~pnY~PNs~~g-~~~~~~~~~~~~~~~g~~~r~~~~~~ddf~Q~ag~ly~r~m~~~er~~Lv 69 (70)
|++.|.++.|||+|||+++ |.+.+.+.++++.++|.+.|+.+ ++|||+| ||+|| |+|+++||+|||
T Consensus 370 m~~~~~~~~~~y~pn~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~q-~~~~~-~~~~~~~~~~l~ 436 (484)
T 1si8_A 370 MRFNNGNSEINYEPNSYTETPKEDPTAKISSFEVEGNVGNYSY-NQDHFTQ-ANALY-NLLPSEEKENLI 436 (484)
T ss_dssp TCSCCCSCSCCCSSCSCTTSCBCCGGGCCCCCBCCSBEEECCC-CCCCSHH-HHHHH-HHSCHHHHHHHH
T ss_pred cccccCCCCCCccCCcCCCCccCCCCCCCCCeeecCceEEecc-ccchhhh-HHHHH-HcCCHHHHHHHH
Confidence 6666778899999999987 77777788888999999888887 6789999 99999 899999999997
No 4
>1dgf_A Catalase; heme, NADPH, hydrogen peroxide, oxidoreductase; HET: HEM NDP; 1.50A {Homo sapiens} SCOP: e.5.1.1 PDB: 1dgg_A* 1f4j_A* 1qqw_A* 1dgh_A* 1dgb_A* 3rgp_A* 3re8_A* 3rgs_A* 3nwl_A* 4blc_A* 1th2_A* 1th3_A* 1th4_A* 1tgu_A* 7cat_A* 8cat_A*
Probab=99.66 E-value=3e-17 Score=119.81 Aligned_cols=68 Identities=38% Similarity=0.539 Sum_probs=60.3
Q ss_pred Ccc-cCCCCCCeecCCCCCCCCCCCCCCCCcccccCceeecccCCCCCcccccchhhhccCChhhhcccc
Q psy8830 1 MAI-DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNYNNGGLVLKSKREVQDRRKPAVPRTNLI 69 (70)
Q Consensus 1 M~~-~n~~~~pnY~PNs~~g~~~~~~~~~~~~~~~g~~~r~~~~~~ddf~Q~ag~ly~r~m~~~er~~Lv 69 (70)
|++ .|+++.|||+|||+++|.+.+.+.++++.++|.+.|+.+.++|||+| ||+||+++|+++||+|||
T Consensus 388 m~~~~~~~~~~~y~pn~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~q-~~~~~~~~~~~~~~~~l~ 456 (497)
T 1dgf_A 388 MCMQDNQGGAPNYYPNSFGAPEQQPSALEHSIQYSGEVRRFNTANDDNVTQ-VRAFYVNVLNEEQRKRLC 456 (497)
T ss_dssp TCCSCTTTTCCCSSSCSSCCCBCCGGGCCCCEECCSEEEECCCTTSCCSHH-HHHHHHHTSCHHHHHHHH
T ss_pred cccccCCCCCccccCCCCCCCcCCCCCCCCcccccCceeeecCCCcchhhh-hHHHHHHcCCHHHHHHHH
Confidence 677 57788999999999988888888888899999998988877889999 999993399999999997
No 5
>2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A {Exiguobacterium oxidotolerans}
Probab=99.63 E-value=8.9e-17 Score=117.15 Aligned_cols=67 Identities=25% Similarity=0.340 Sum_probs=57.9
Q ss_pred CcccCCCCCCeecCCCCCC-CCCCCCCCCCcccccCcee-ecccCCCCCcccccchhhhccCChhhhcccc
Q psy8830 1 MAIDNQNGAPNYYPNSFKG-PEPTPRGAWSTYNATGDVK-RGNYNNGGLVLKSKREVQDRRKPAVPRTNLI 69 (70)
Q Consensus 1 M~~~n~~~~pnY~PNs~~g-~~~~~~~~~~~~~~~g~~~-r~~~~~~ddf~Q~ag~ly~r~m~~~er~~Lv 69 (70)
|++...++.|||+|||+++ |.+.+.+.++++.++|.+. ++.+.++|||+| ||+|| |+|+++||+|||
T Consensus 372 m~~~~~~~~~~y~pn~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~q-~~~~~-~~~~~~~~~~l~ 440 (491)
T 2j2m_A 372 MPFKQQTSSVNYEPNRYQDEPKQTPEYTEDTQPLHDDIHGRLEIEKTNNFGQ-AGEVY-RRMTEEEQMALL 440 (491)
T ss_dssp SCTTCCCCSCCSSSCSCTTSCBCCGGGSCCCEECCCSEEEECCCSCCCTTHH-HHHHH-HHSCHHHHHHHH
T ss_pred cccccCCCCCCccCCcCCCCccCCCCCCCCCceeccceEeecccCCcchhhh-hHHHH-HcCCHHHHHHHH
Confidence 6773237899999999987 7777778888899999988 777767889999 99999 899999999997
No 6
>1gwe_A Catalase; oxidoreductase, hdyrogen-peroxide:hydrogen peroxide oxidoreductase; HET: HEM; 0.88A {Micrococcus luteus} SCOP: e.5.1.1 PDB: 1gwh_A* 1hbz_A* 1gwf_A*
Probab=99.62 E-value=2.1e-16 Score=115.50 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=57.2
Q ss_pred CcccCCCCCCeecCCCCCC-CCCCCCCCCCcccccCceeecc--cC-CCCCcccccchhhhccCChhhhcccc
Q psy8830 1 MAIDNQNGAPNYYPNSFKG-PEPTPRGAWSTYNATGDVKRGN--YN-NGGLVLKSKREVQDRRKPAVPRTNLI 69 (70)
Q Consensus 1 M~~~n~~~~pnY~PNs~~g-~~~~~~~~~~~~~~~g~~~r~~--~~-~~ddf~Q~ag~ly~r~m~~~er~~Lv 69 (70)
|++.|.++.|||+|||+++ |.+.+.+.++++.++|.+.+.. +. ++|||+| ||+||+++|+++||+|||
T Consensus 376 m~~~~~~~~~~y~pn~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~Q-~~~~~~~~~~~~~~~~l~ 447 (503)
T 1gwe_A 376 MWYDHTGDRSTYVPNSNGDSWSDETGPVDDGWEADGTLTREAQALRADDDDFGQ-AGTLVREVFSDQERDDFV 447 (503)
T ss_dssp TCCSCCTTCCSSSSCSSSCCCCCCCSSCTTCCCCCCCCCCCCCCCCTTCCSSHH-HHHHHHHTSCHHHHHHHH
T ss_pred cccccCCCCCCcCCCcCCCCccCCCCCCCCCceecCceeEEeecCCCCcchhhh-hHHHHHHcCCHHHHHHHH
Confidence 6666778899999999987 7777888888899999965555 43 6789999 999993399999999997
No 7
>1qwl_A KATA catalase; beta barrel, azide complex, oxyferryl complex, oxidoreductas; HET: HEM; 1.60A {Helicobacter pylori} SCOP: e.5.1.1 PDB: 1qwm_A* 2a9e_A* 2iqf_A*
Probab=99.60 E-value=1.5e-16 Score=116.22 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=57.1
Q ss_pred CcccCCCCCCeecCCCCCCCCCCCCCCCCcccccC-----ceeecccC--CCCCcccccchhhhccCChhhhcccc
Q psy8830 1 MAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATG-----DVKRGNYN--NGGLVLKSKREVQDRRKPAVPRTNLI 69 (70)
Q Consensus 1 M~~~n~~~~pnY~PNs~~g~~~~~~~~~~~~~~~g-----~~~r~~~~--~~ddf~Q~ag~ly~r~m~~~er~~Lv 69 (70)
|+..|+++.|||+|||+++|.+.+.+.++++.++| .+.|+.+. ++|||+| ||+|| |+|+++||+|||
T Consensus 372 m~~~~~~~~~~y~pns~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~Q-~~~~~-~~~~~~~~~~l~ 445 (505)
T 1qwl_A 372 MQNGYYGSLQNYTPSSLPGYKEDKSARDPKFNLAHIEKEFEVWNWDYRADDSDYYTQ-PGDYY-RSLPADEKERLH 445 (505)
T ss_dssp TCCCTTTTCCCCSSCSSSCCCCCGGGCCCCBCGGGTCSCCCBSCCCHHHHCCCCSHH-HHHHH-HHSCHHHHHHHH
T ss_pred ccccCCCCCCCccCCcCCCccCCCCCCCCCccccCcccceeeEeeccCCCCcchhhh-hHHHH-HhCCHHHHHHHH
Confidence 45335678999999999988888888888888999 77777764 6789999 99999 899999999997
No 8
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=99.54 E-value=3.2e-15 Score=112.30 Aligned_cols=67 Identities=10% Similarity=0.016 Sum_probs=54.4
Q ss_pred CcccCCCCCCeecCCCCCC--CCCCC-----CCCCCcccc-cCceeecccCC-CCCcccccchhhhccCChhhhcccc
Q psy8830 1 MAIDNQNGAPNYYPNSFKG--PEPTP-----RGAWSTYNA-TGDVKRGNYNN-GGLVLKSKREVQDRRKPAVPRTNLI 69 (70)
Q Consensus 1 M~~~n~~~~pnY~PNs~~g--~~~~~-----~~~~~~~~~-~g~~~r~~~~~-~ddf~Q~ag~ly~r~m~~~er~~Lv 69 (70)
|++.+.++.|||+|||+++ |.+.+ .+.++++.+ +|.+.|+.+.+ +|||+| ||.|| |+|+++||+|||
T Consensus 384 m~~~~~~~~~~y~pns~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~q-~~~~~-~~~~~~~~~~l~ 459 (688)
T 2iuf_A 384 GQMFIPLDPNAYSPNTENKGSPKQANETVGKGFFTAPERTASGKLQRTLSTTFENNWSQ-PRLFW-NSLVNAQKEFIV 459 (688)
T ss_dssp TCCCCCCCSCCCSSCSTTTTCSCCCCSSSTTCCCCCTTCCCCSCEEECCCGGGCCCSHH-HHHHH-HTSCHHHHHHHH
T ss_pred ccccCCCCCCccccCcCCCCCccccccccCCCcccCccccccCceEEeccccccchhhh-HHHHH-HcCCHHHHHHHH
Confidence 6776667799999999976 54444 455667777 99988888753 689999 99999 899999999997
No 9
>1a4e_A Catalase A; oxidoreductase, peroxidase; HET: HEM; 2.40A {Saccharomyces cerevisiae} SCOP: e.5.1.1
Probab=99.51 E-value=1.9e-15 Score=110.13 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=54.4
Q ss_pred Ccc-cCCCCCCeecCCCCC---CCCCCCCCCCCcccccCceeecccC---CCCCcccccchhhhccC--Chhhhcccc
Q psy8830 1 MAI-DNQNGAPNYYPNSFK---GPEPTPRGAWSTYNATGDVKRGNYN---NGGLVLKSKREVQDRRK--PAVPRTNLI 69 (70)
Q Consensus 1 M~~-~n~~~~pnY~PNs~~---g~~~~~~~~~~~~~~~g~~~r~~~~---~~ddf~Q~ag~ly~r~m--~~~er~~Lv 69 (70)
|++ .|+++.|||+|||++ ++.+.+.+.+.+ .++|.+.|+.+. ++|||+| ||+|| |+| +++||+|||
T Consensus 376 m~~~~~~~~~~~y~pn~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~Q-~~~~~-~~~~~~~~~~~~l~ 450 (488)
T 1a4e_A 376 MNVNGNFGSEPTYLANDKSYTYIQQDRPIQQHQE-VWNGPAIPYHWATSPGDVDFVQ-ARNLY-RVLGKQPGQQKNLA 450 (488)
T ss_dssp TCCSCTTTTCCSSCCTTSCCBCCCTTCCSSTTSC-CEEECEEEECCCCCSSSHHHHH-HHHHH-HHHHSSTTHHHHHH
T ss_pred cccccCCCCCcccccCccCCCCCCccCCCCcCCC-CccccEEEeecccCCCcchhhh-HHHHH-HhcCCCHHHHHHHH
Confidence 677 577889999999997 577777777632 348888888875 6789999 99999 899 999999997
No 10
>2xq1_A Peroxisomal catalase; oxidoreductase, hydrogen peroxide detoxification, PTS1; HET: HEM; 2.90A {Pichia angusta}
Probab=99.50 E-value=4.1e-15 Score=108.83 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=50.8
Q ss_pred Ccc-cCCCCCCeecCCCCCC----CCCCCC--CCCCcccccCceeecccC-CCCCcccccchhhhccC--Chhhhcccc
Q psy8830 1 MAI-DNQNGAPNYYPNSFKG----PEPTPR--GAWSTYNATGDVKRGNYN-NGGLVLKSKREVQDRRK--PAVPRTNLI 69 (70)
Q Consensus 1 M~~-~n~~~~pnY~PNs~~g----~~~~~~--~~~~~~~~~g~~~r~~~~-~~ddf~Q~ag~ly~r~m--~~~er~~Lv 69 (70)
|++ .|+++.|||+|||+++ |.+.+. +.+++ ++|.+.|+.+. ++|||+| ||+|| |+| +++||+|||
T Consensus 385 m~~~~~~~~~~~y~pn~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~q-~~~~~-~~~~~~~~~~~~l~ 459 (509)
T 2xq1_A 385 MCVDGNLGGTPNYANAYNCPIQYAVSPKASGNKPDEK--YTGEVVPYHWEHTDYDYFQ-PKMFW-KVLGRTPGEQESLV 459 (509)
T ss_dssp TCCSCTTTTCCSSTTCTTCCCBCCCC------CCCCC--EEECCEEECCCCCGGGGHH-HHHHH-HHTTSSTTHHHHHH
T ss_pred cccccCCCCcccccccccCCCCCCCcCCCcCCcCCCC--cccceEeecCCCCcchhhh-HHHHH-HhcCCCHHHHHHHH
Confidence 677 5778899999999976 455555 55654 48888888875 5789999 99999 899 999999997
No 11
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=99.46 E-value=1.2e-14 Score=110.01 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=52.6
Q ss_pred CcccCCCCCCeecCCCCCC--CCCCC------CCCCCcccccCceeecccC-CCCCcccccchhhhccCChhhhcccc
Q psy8830 1 MAIDNQNGAPNYYPNSFKG--PEPTP------RGAWSTYNATGDVKRGNYN-NGGLVLKSKREVQDRRKPAVPRTNLI 69 (70)
Q Consensus 1 M~~~n~~~~pnY~PNs~~g--~~~~~------~~~~~~~~~~g~~~r~~~~-~~ddf~Q~ag~ly~r~m~~~er~~Lv 69 (70)
|++.++++.|||+|||+++ |.+++ .+.+++..++|.+.|+... .+|||+| ||+|| |+|+++||+|||
T Consensus 449 m~~~~~~~~~~Y~pns~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~f~Q-~~~~~-~~~~~~~~~~l~ 524 (753)
T 3ttv_A 449 HRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSPSFGEYYSH-PRLFW-LSQTPFEQRHIV 524 (753)
T ss_dssp TCCCEECCSCSSSSCSTTTTCSBCCCCCSSSCCBCCCCCEEEEEEEECCCGGGCCCSHH-HHHHH-HHSCHHHHHHHH
T ss_pred ccccCCCCCCceeCCCCCCCCcccCcccccccccccCCcccccceEeecccCccchhHH-HHHHH-HhCCHHHHHHHH
Confidence 6666667889999999975 55543 2344555688988887664 4789999 99999 899999999997
No 12
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=99.36 E-value=1.9e-13 Score=103.11 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=52.0
Q ss_pred CcccCCCCCCeecCCCCCCCCCCC------CCCCCcccccCceeecccCC-CCCcccccchhhhccCChhhhcccc
Q psy8830 1 MAIDNQNGAPNYYPNSFKGPEPTP------RGAWSTYNATGDVKRGNYNN-GGLVLKSKREVQDRRKPAVPRTNLI 69 (70)
Q Consensus 1 M~~~n~~~~pnY~PNs~~g~~~~~------~~~~~~~~~~g~~~r~~~~~-~ddf~Q~ag~ly~r~m~~~er~~Lv 69 (70)
|++.+.++.|||+||+. +...+ .+.++++.++|.+.|+.+.+ +|||+| ||.|| |+|+++||+|||
T Consensus 391 ~~~~~~~~~~~y~pn~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~q-~~~~~-~~~~~~~~~~~~ 462 (715)
T 1sy7_A 391 MRHTISRGTVNYYPNRF--DACPPASLKEGGYLEYAQKVAGIKARARSAKFKEHFSQ-AQLFY-NSMSPIEKQHMI 462 (715)
T ss_dssp TCCCCCCSSCCSSSCTT--CCSCCCCTTTTCCCCCCCCCCSCCCSCCCGGGGCCSHH-HHHHH-HHSCHHHHHHHH
T ss_pred hccccCCCCcccccCCC--cccCccccccCCccCCCccccccEEEeccCCccchhhh-HHHHH-HcCCHHHHHHHH
Confidence 56655677899999954 44433 56677788899988888754 589999 99999 899999999997
No 13
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=99.33 E-value=2.8e-13 Score=101.86 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=48.2
Q ss_pred CCCCeecCCCCCC--CCCCCC------CCCCcccccCceeecccC-CCCCcccccchhhhccCChhhhcccc
Q psy8830 7 NGAPNYYPNSFKG--PEPTPR------GAWSTYNATGDVKRGNYN-NGGLVLKSKREVQDRRKPAVPRTNLI 69 (70)
Q Consensus 7 ~~~pnY~PNs~~g--~~~~~~------~~~~~~~~~g~~~r~~~~-~~ddf~Q~ag~ly~r~m~~~er~~Lv 69 (70)
++.+||+|||+++ |.+++. +.++...++|.+.|+.+. .+|||+| ||+|| |+|+++||+|||
T Consensus 398 ~~~~~y~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~Q-~~~~~-~~~~~~~~~~l~ 467 (688)
T 3ej6_A 398 KNIHHYSPSYLNKGYPAQANQTVGRGFFTTPGRTASGVLNRELSATFDDHYTQ-PRLFF-NSLTPVEQQFVI 467 (688)
T ss_dssp CCSCCSSSCTTTTTCSBCCCSSSTTCCCCCTTCEEEEEEESSCCGGGCCCSHH-HHHHH-HTSCHHHHHHHH
T ss_pred CCCCCcCCCCCCCCCCccCcccccCccccCCCceeecceEeccCcCCcchhHH-HHHHH-HhCCHHHHHHHH
Confidence 3468999999953 554443 234666789999888774 4789999 99999 899999999997
No 14
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=47.78 E-value=6.1 Score=20.78 Aligned_cols=15 Identities=0% Similarity=-0.287 Sum_probs=13.0
Q ss_pred cchhhhccCChhhhcc
Q psy8830 52 KREVQDRRKPAVPRTN 67 (70)
Q Consensus 52 ag~ly~r~m~~~er~~ 67 (70)
.|+.| +.||+++|+.
T Consensus 39 lg~~W-k~ls~~eK~~ 53 (76)
T 1hry_A 39 LGYQW-KMLTEAEKWP 53 (76)
T ss_dssp HHHHH-HTCCHHHHHH
T ss_pred HHhHH-HhCCHHHHHH
Confidence 78899 8999999864
No 15
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=44.43 E-value=7.4 Score=19.99 Aligned_cols=15 Identities=7% Similarity=-0.024 Sum_probs=12.9
Q ss_pred cchhhhccCChhhhcc
Q psy8830 52 KREVQDRRKPAVPRTN 67 (70)
Q Consensus 52 ag~ly~r~m~~~er~~ 67 (70)
.|+.| +.||+++|..
T Consensus 33 lg~~W-k~ls~~eK~~ 47 (67)
T 3fgh_A 33 VKENW-KNLSDSEKEL 47 (67)
T ss_dssp HHHHH-HTCCHHHHHH
T ss_pred HHHHH-hhCCHHHHHH
Confidence 68899 8999999864
No 16
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=44.38 E-value=6.3 Score=20.27 Aligned_cols=15 Identities=0% Similarity=-0.119 Sum_probs=13.0
Q ss_pred cchhhhccCChhhhcc
Q psy8830 52 KREVQDRRKPAVPRTN 67 (70)
Q Consensus 52 ag~ly~r~m~~~er~~ 67 (70)
.|..| +.|++++|..
T Consensus 37 lg~~W-k~ls~~eK~~ 51 (71)
T 4a3n_A 37 LGKSW-KALTLAEKRP 51 (71)
T ss_dssp HHHHH-HHSCHHHHHH
T ss_pred HHHHH-hcCCHHHHHH
Confidence 78899 8999999864
No 17
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=42.88 E-value=8.2 Score=20.48 Aligned_cols=15 Identities=0% Similarity=-0.170 Sum_probs=12.9
Q ss_pred cchhhhccCChhhhcc
Q psy8830 52 KREVQDRRKPAVPRTN 67 (70)
Q Consensus 52 ag~ly~r~m~~~er~~ 67 (70)
.|+.| +.||+++|+.
T Consensus 37 lg~~W-k~ls~eeK~~ 51 (80)
T 1gt0_D 37 LGAEW-KLLSETEKRP 51 (80)
T ss_dssp HHHHH-TTSCHHHHHH
T ss_pred HHHHH-HhCCHHHHHH
Confidence 68889 8999999864
No 18
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=41.94 E-value=8.6 Score=20.77 Aligned_cols=15 Identities=0% Similarity=-0.287 Sum_probs=12.9
Q ss_pred cchhhhccCChhhhcc
Q psy8830 52 KREVQDRRKPAVPRTN 67 (70)
Q Consensus 52 ag~ly~r~m~~~er~~ 67 (70)
.|+.| +.||+++|+.
T Consensus 39 lg~~W-k~ls~eeK~~ 53 (85)
T 1j46_A 39 LGYQW-KMLTEAEKWP 53 (85)
T ss_dssp HHHHH-TTSCHHHHHH
T ss_pred HHHHH-HHCCHHHHHH
Confidence 78899 8999999864
No 19
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=41.41 E-value=8.7 Score=20.53 Aligned_cols=15 Identities=0% Similarity=-0.199 Sum_probs=13.0
Q ss_pred cchhhhccCChhhhcc
Q psy8830 52 KREVQDRRKPAVPRTN 67 (70)
Q Consensus 52 ag~ly~r~m~~~er~~ 67 (70)
.|+.| +.|++++|+.
T Consensus 42 lg~~W-k~ls~~eK~~ 56 (82)
T 1wz6_A 42 LADWW-AVLDPKEKQK 56 (82)
T ss_dssp HHHHH-HTCCHHHHHH
T ss_pred HHHHH-hhCCHHHHHH
Confidence 78889 8999999864
No 20
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=40.19 E-value=9.5 Score=20.59 Aligned_cols=15 Identities=0% Similarity=-0.201 Sum_probs=12.9
Q ss_pred cchhhhccCChhhhcc
Q psy8830 52 KREVQDRRKPAVPRTN 67 (70)
Q Consensus 52 ag~ly~r~m~~~er~~ 67 (70)
.|+.| +.||+++|+.
T Consensus 37 lg~~W-k~ls~eeK~~ 51 (86)
T 2lef_A 37 LGRRW-HALSREEQAK 51 (86)
T ss_dssp HHHHH-TTSCHHHHHH
T ss_pred HHHHH-hcCCHHHHHH
Confidence 78889 8999999864
No 21
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=40.11 E-value=8 Score=20.63 Aligned_cols=15 Identities=0% Similarity=-0.086 Sum_probs=12.7
Q ss_pred cchhhhccCChhhhcc
Q psy8830 52 KREVQDRRKPAVPRTN 67 (70)
Q Consensus 52 ag~ly~r~m~~~er~~ 67 (70)
.|+.| +.|++++|+.
T Consensus 39 lg~~W-k~ls~eeK~~ 53 (81)
T 1i11_A 39 LGSRW-KAMTNLEKQP 53 (81)
T ss_dssp HHHHH-TTSCSGGGHH
T ss_pred HHhhh-hhCCHHHHHH
Confidence 78889 8999998863
No 22
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=39.55 E-value=8.3 Score=20.32 Aligned_cols=15 Identities=0% Similarity=-0.210 Sum_probs=12.8
Q ss_pred cchhhhccCChhhhcc
Q psy8830 52 KREVQDRRKPAVPRTN 67 (70)
Q Consensus 52 ag~ly~r~m~~~er~~ 67 (70)
.|+.| +.|++++|+.
T Consensus 37 lg~~W-k~ls~~eK~~ 51 (79)
T 3u2b_C 37 LGKRW-KLLKDSDKIP 51 (79)
T ss_dssp HHHHH-HHSCHHHHHH
T ss_pred HHHHH-HhCCHHHHHH
Confidence 68899 8999999863
No 23
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=39.39 E-value=6.6 Score=20.30 Aligned_cols=15 Identities=13% Similarity=0.003 Sum_probs=12.3
Q ss_pred cchhhhccCChhhhcc
Q psy8830 52 KREVQDRRKPAVPRTN 67 (70)
Q Consensus 52 ag~ly~r~m~~~er~~ 67 (70)
-|+.| +.||+++|..
T Consensus 38 lg~~W-k~ls~~eK~~ 52 (71)
T 1ckt_A 38 CSERW-KTMSAKEKGK 52 (71)
T ss_dssp HHHHH-HTCCTTTSHH
T ss_pred HHHHH-hhCCHHHHHH
Confidence 67889 8999998863
No 24
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.60 E-value=9.9 Score=20.56 Aligned_cols=15 Identities=7% Similarity=0.018 Sum_probs=12.7
Q ss_pred cchhhhccCChhhhcc
Q psy8830 52 KREVQDRRKPAVPRTN 67 (70)
Q Consensus 52 ag~ly~r~m~~~er~~ 67 (70)
.|+.| +.|++++|..
T Consensus 52 lg~~W-k~ls~~eK~~ 66 (86)
T 2eqz_A 52 CSERW-KTMSGKEKSK 66 (86)
T ss_dssp HHHHH-HSSCHHHHHH
T ss_pred HHHHH-HhCCHHHHHH
Confidence 68889 8999999863
No 25
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=37.99 E-value=9.1 Score=20.41 Aligned_cols=15 Identities=0% Similarity=-0.119 Sum_probs=12.9
Q ss_pred cchhhhccCChhhhcc
Q psy8830 52 KREVQDRRKPAVPRTN 67 (70)
Q Consensus 52 ag~ly~r~m~~~er~~ 67 (70)
.|+.| +.|++++|+.
T Consensus 41 lg~~W-k~ls~~eK~~ 55 (83)
T 3f27_D 41 LGKSW-KALTLAEKRP 55 (83)
T ss_dssp HHHHH-HHSCHHHHHH
T ss_pred HHHHH-hcCCHHHHHH
Confidence 78899 8999999864
No 26
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.68 E-value=11 Score=20.57 Aligned_cols=19 Identities=16% Similarity=0.020 Sum_probs=14.2
Q ss_pred cccccchhhhccCChhhhcc
Q psy8830 48 VLKSKREVQDRRKPAVPRTN 67 (70)
Q Consensus 48 f~Q~ag~ly~r~m~~~er~~ 67 (70)
++.--|+.| +.|+++||.-
T Consensus 37 isK~lge~W-k~ls~eeK~~ 55 (81)
T 2d7l_A 37 IIKEGMIRF-RVLSTEERKV 55 (81)
T ss_dssp HHHHHHHHH-SSSCHHHHHH
T ss_pred HHHHHHHHH-HcCCHHHHHH
Confidence 333378889 8999999863
No 27
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=37.26 E-value=9.4 Score=20.74 Aligned_cols=15 Identities=7% Similarity=-0.044 Sum_probs=12.9
Q ss_pred cchhhhccCChhhhcc
Q psy8830 52 KREVQDRRKPAVPRTN 67 (70)
Q Consensus 52 ag~ly~r~m~~~er~~ 67 (70)
.|+.| +.|++++|+.
T Consensus 52 lg~~W-k~ls~eeK~~ 66 (87)
T 2e6o_A 52 LGDRW-KKMKNEERRM 66 (87)
T ss_dssp HHHHH-HHSCHHHHHH
T ss_pred HHHHH-hhCCHHHHHH
Confidence 78889 8999999864
No 28
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=36.69 E-value=9.8 Score=20.35 Aligned_cols=15 Identities=13% Similarity=0.003 Sum_probs=12.7
Q ss_pred cchhhhccCChhhhcc
Q psy8830 52 KREVQDRRKPAVPRTN 67 (70)
Q Consensus 52 ag~ly~r~m~~~er~~ 67 (70)
-|+.| +.||+++|..
T Consensus 44 lg~~W-k~ls~~eK~~ 58 (83)
T 1aab_A 44 CSERW-KTMSAKEKGK 58 (83)
T ss_dssp HHHHH-TTSCTTHHHH
T ss_pred HHHHH-HhCCHHHHHH
Confidence 68889 8999999863
No 29
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=36.11 E-value=12 Score=21.13 Aligned_cols=15 Identities=7% Similarity=-0.013 Sum_probs=13.1
Q ss_pred cchhhhccCChhhhcc
Q psy8830 52 KREVQDRRKPAVPRTN 67 (70)
Q Consensus 52 ag~ly~r~m~~~er~~ 67 (70)
.|+.| +.|+++||..
T Consensus 41 lge~W-k~ls~~eK~~ 55 (101)
T 1v63_A 41 IGSRW-QRISQSQKEH 55 (101)
T ss_dssp HHHHH-TTSCHHHHHH
T ss_pred HHHHH-HhCCHHHHHH
Confidence 88899 8999999863
No 30
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=36.04 E-value=10 Score=22.09 Aligned_cols=14 Identities=0% Similarity=0.055 Sum_probs=10.5
Q ss_pred hhhhccCChhhhccc
Q psy8830 54 EVQDRRKPAVPRTNL 68 (70)
Q Consensus 54 ~ly~r~m~~~er~~L 68 (70)
.+| .|||+++|+.|
T Consensus 86 qmy-~lLTPEQk~q~ 99 (108)
T 3o39_A 86 KIY-NILTPEQKKQF 99 (108)
T ss_dssp HHH-TTSCHHHHHHH
T ss_pred HHH-HhCCHHHHHHH
Confidence 467 78999888754
No 31
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.40 E-value=12 Score=20.53 Aligned_cols=15 Identities=7% Similarity=0.038 Sum_probs=12.8
Q ss_pred cchhhhccCChhhhcc
Q psy8830 52 KREVQDRRKPAVPRTN 67 (70)
Q Consensus 52 ag~ly~r~m~~~er~~ 67 (70)
.|+.| +.|++++|..
T Consensus 42 lg~~W-k~ls~eeK~~ 56 (92)
T 2cs1_A 42 IEELW-KTLSEEEKLK 56 (92)
T ss_dssp HHHHH-HSSCHHHHHH
T ss_pred HHHHH-hcCCHHHHHH
Confidence 68889 8999999864
No 32
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=35.33 E-value=9.1 Score=20.10 Aligned_cols=15 Identities=13% Similarity=0.025 Sum_probs=12.7
Q ss_pred cchhhhccCChhhhcc
Q psy8830 52 KREVQDRRKPAVPRTN 67 (70)
Q Consensus 52 ag~ly~r~m~~~er~~ 67 (70)
.|..| +.||+++|..
T Consensus 41 lg~~W-k~ls~~eK~~ 55 (77)
T 1hme_A 41 LGEMW-NNTAADDKQP 55 (77)
T ss_dssp HHHHH-HHSCGGGSHH
T ss_pred HHHHH-HhCCHHHHHH
Confidence 68889 8999999863
No 33
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=33.50 E-value=14 Score=20.90 Aligned_cols=15 Identities=7% Similarity=-0.068 Sum_probs=13.1
Q ss_pred cchhhhccCChhhhcc
Q psy8830 52 KREVQDRRKPAVPRTN 67 (70)
Q Consensus 52 ag~ly~r~m~~~er~~ 67 (70)
.|+.| +.|++++|+.
T Consensus 64 lg~~W-k~ls~eeK~~ 78 (106)
T 4euw_A 64 LGKLW-RLLNESEKRP 78 (106)
T ss_dssp HHHHH-TTCCHHHHHH
T ss_pred HHHHH-HcCCHHHHHH
Confidence 78899 8999999874
No 34
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=33.40 E-value=12 Score=20.59 Aligned_cols=15 Identities=0% Similarity=-0.099 Sum_probs=12.7
Q ss_pred cchhhhccCChhhhcc
Q psy8830 52 KREVQDRRKPAVPRTN 67 (70)
Q Consensus 52 ag~ly~r~m~~~er~~ 67 (70)
.|+.| +.|++++|..
T Consensus 42 lg~~W-k~ls~eeK~~ 56 (92)
T 2crj_A 42 LGAEW-SKLQPAEKQR 56 (92)
T ss_dssp HHHHH-HTCCTTHHHH
T ss_pred HHHHH-HcCCHHHHHH
Confidence 68889 8999999864
No 35
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.75 E-value=12 Score=21.09 Aligned_cols=20 Identities=5% Similarity=-0.178 Sum_probs=15.1
Q ss_pred Cccccc---chhhhccCChhhhcc
Q psy8830 47 LVLKSK---REVQDRRKPAVPRTN 67 (70)
Q Consensus 47 df~Q~a---g~ly~r~m~~~er~~ 67 (70)
+++.-- |+.| +.|+++||..
T Consensus 38 eisK~l~~cGe~W-k~ls~eEK~p 60 (93)
T 2cto_A 38 RVADAIPYCSSDW-ALLREEEKEK 60 (93)
T ss_dssp SHHHHTGGGHHHH-HHSCHHHHHH
T ss_pred HHHHHHHHHHHHH-HcCCHHHHHH
Confidence 455523 9999 8999999863
No 36
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=31.91 E-value=13 Score=20.33 Aligned_cols=15 Identities=0% Similarity=-0.071 Sum_probs=12.6
Q ss_pred cchhhhccCChhhhcc
Q psy8830 52 KREVQDRRKPAVPRTN 67 (70)
Q Consensus 52 ag~ly~r~m~~~er~~ 67 (70)
.|+.| +.|++++|+.
T Consensus 55 lg~~W-k~ls~eeK~~ 69 (90)
T 1wgf_A 55 LARMW-NDLSEKKKAK 69 (90)
T ss_dssp HHHHH-HHSCHHHHHH
T ss_pred HHHHH-HhCCHHHHHH
Confidence 67889 8999999864
No 37
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=29.09 E-value=19 Score=20.15 Aligned_cols=15 Identities=0% Similarity=-0.214 Sum_probs=12.7
Q ss_pred cchhhhccCChhhhcc
Q psy8830 52 KREVQDRRKPAVPRTN 67 (70)
Q Consensus 52 ag~ly~r~m~~~er~~ 67 (70)
.|..| +.|++++|..
T Consensus 52 lg~~W-k~ls~eeK~~ 66 (102)
T 2co9_A 52 VASMW-DGLGEEQKQV 66 (102)
T ss_dssp HHHHH-TTCCHHHHHH
T ss_pred HHHHH-ccCCHHHHHH
Confidence 67889 8999999864
No 38
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=28.22 E-value=12 Score=21.01 Aligned_cols=15 Identities=7% Similarity=0.107 Sum_probs=12.7
Q ss_pred cchhhhccCChhhhcc
Q psy8830 52 KREVQDRRKPAVPRTN 67 (70)
Q Consensus 52 ag~ly~r~m~~~er~~ 67 (70)
.|+.| +.||+++|+.
T Consensus 45 lg~~W-k~ls~eeK~~ 59 (99)
T 1k99_A 45 LSKKY-KELPEKKKMK 59 (99)
T ss_dssp HHHHH-HHSCSTTHHH
T ss_pred HHHHH-HhCCHHHHHH
Confidence 78889 8999999864
No 39
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=27.48 E-value=18 Score=21.74 Aligned_cols=14 Identities=0% Similarity=0.055 Sum_probs=10.6
Q ss_pred hhhhccCChhhhccc
Q psy8830 54 EVQDRRKPAVPRTNL 68 (70)
Q Consensus 54 ~ly~r~m~~~er~~L 68 (70)
.+| .|||+++|+.|
T Consensus 102 ~~~-~vLTPEQr~q~ 115 (138)
T 3oeo_A 102 KIY-NILTPEQKKQF 115 (138)
T ss_dssp HHH-TTSCHHHHHHH
T ss_pred HHH-HhCCHHHHHHH
Confidence 467 78999888754
No 40
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=26.02 E-value=15 Score=20.23 Aligned_cols=15 Identities=7% Similarity=-0.088 Sum_probs=12.9
Q ss_pred cchhhhccCChhhhcc
Q psy8830 52 KREVQDRRKPAVPRTN 67 (70)
Q Consensus 52 ag~ly~r~m~~~er~~ 67 (70)
.|+.| +.|++++|..
T Consensus 55 lg~~W-k~ls~eeK~~ 69 (93)
T 1cg7_A 55 LGEKW-KALTPEEKQP 69 (93)
T ss_dssp HHHHH-HTTHHHHHHH
T ss_pred HHHHH-HhCCHHHHHH
Confidence 78899 8999999864
No 41
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=25.30 E-value=16 Score=20.18 Aligned_cols=20 Identities=5% Similarity=-0.130 Sum_probs=14.7
Q ss_pred cccccchhhhccCChhhhccc
Q psy8830 48 VLKSKREVQDRRKPAVPRTNL 68 (70)
Q Consensus 48 f~Q~ag~ly~r~m~~~er~~L 68 (70)
.+.-.|+.| +.|++++|...
T Consensus 55 isk~lg~~W-k~ls~eeK~~Y 74 (97)
T 2lhj_A 55 IGKMIGAAW-NALSDEEKKPY 74 (97)
T ss_dssp HHHHHHHTS-SSSCSTTTSSS
T ss_pred HHHHHHHHH-HhCCHHHHHHH
Confidence 333368889 89999998753
No 42
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=24.77 E-value=20 Score=20.39 Aligned_cols=19 Identities=0% Similarity=-0.167 Sum_probs=14.2
Q ss_pred cccccchhhhccCChhhhcc
Q psy8830 48 VLKSKREVQDRRKPAVPRTN 67 (70)
Q Consensus 48 f~Q~ag~ly~r~m~~~er~~ 67 (70)
++.--|+.| +.|+++||..
T Consensus 44 isk~lg~~W-k~Ls~~eK~~ 62 (108)
T 1v64_A 44 RMVLCSQQW-KLLSQKEKDA 62 (108)
T ss_dssp HHHHHHHHH-HHSCHHHHHH
T ss_pred HHHHHHHHH-HhCCHHHHHH
Confidence 333378889 8999999863
No 43
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=24.73 E-value=21 Score=21.79 Aligned_cols=14 Identities=14% Similarity=0.102 Sum_probs=9.2
Q ss_pred hhhhccCChhhhccc
Q psy8830 54 EVQDRRKPAVPRTNL 68 (70)
Q Consensus 54 ~ly~r~m~~~er~~L 68 (70)
.+| .|||+++|+.|
T Consensus 114 qiy-~vLTPEQk~ql 127 (145)
T 3itf_A 114 QMY-RLLTPEQQAVL 127 (145)
T ss_dssp HHH-TTSCHHHHHHH
T ss_pred HHH-hhCCHHHHHHH
Confidence 456 67777777654
No 44
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=24.72 E-value=17 Score=24.99 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=17.4
Q ss_pred CcccccchhhhccCChhhhcccc
Q psy8830 47 LVLKSKREVQDRRKPAVPRTNLI 69 (70)
Q Consensus 47 df~Q~ag~ly~r~m~~~er~~Lv 69 (70)
+|.+.|..|| |.|+++||+.|+
T Consensus 175 YYKR~p~~F~-rnl~~~ErqeLl 196 (289)
T 1r8j_A 175 YYKRDPDRFL-RNLPAYESQKLH 196 (289)
T ss_dssp EECCCGGGST-TTSCHHHHHHHH
T ss_pred eeeeCHHHHH-HhCCHHHHHHHH
Confidence 5666677888 899999998764
No 45
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=24.49 E-value=20 Score=20.32 Aligned_cols=18 Identities=11% Similarity=0.006 Sum_probs=13.7
Q ss_pred cccccchhhhccCChhhhc
Q psy8830 48 VLKSKREVQDRRKPAVPRT 66 (70)
Q Consensus 48 f~Q~ag~ly~r~m~~~er~ 66 (70)
++.-.|+.| +.|+++||.
T Consensus 34 vsK~lGe~W-k~ls~~eK~ 51 (91)
T 1l8y_A 34 ALKAMEMTW-NNMEKKEKL 51 (91)
T ss_dssp HHHHHHHHH-HTTGGGHHH
T ss_pred HHHHHHHHH-hcCCHHHHH
Confidence 333378889 899999885
Done!