RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8830
         (70 letters)



>gnl|CDD|163712 cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme
           catalase.  Catalase is a ubiquitous enzyme found in both
           prokaryotes and eukaryotes, which is involved in the
           protection of cells from the toxic effects of peroxides.
           It catalyzes the conversion of hydrogen peroxide to
           water and molecular oxygen. Catalases also utilize
           hydrogen peroxide to oxidize various substrates such as
           alcohol or phenols. Clade 3 catalases are the most
           abundant subfamily and are found in all three kingdoms
           of life; they have a relatively small subunit size of 43
           to 75 kDa, and bind a protoheme IX (heme b) group buried
           deep inside the structure. Clade 3 catalases also bind
           NADPH as a second redox-active cofactor. They form
           tetramers, and in eukaryotic cells, catalases are
           located in peroxisomes.
          Length = 429

 Score = 50.2 bits (121), Expect = 4e-09
 Identities = 21/43 (48%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 1   MAID-NQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNY 42
           M +D N  GAPNY PNSF GP   P  A      +GD  R NY
Sbjct: 324 MRVDGNGGGAPNYEPNSFGGPPEDPEYAEPPLPVSGDADRYNY 366


>gnl|CDD|223824 COG0753, KatE, Catalase [Inorganic ion transport and metabolism].
          Length = 496

 Score = 32.7 bits (75), Expect = 0.006
 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 1   MAIDNQNGAPNYYPNSF-KGPEPTPRGAWSTYNAT--GDVKRGNY 42
           M +    G  NY PNSF   PE   +  +        GD +R   
Sbjct: 380 MRMGINTGPANYEPNSFGDNPEAPEQPGFVEPPERVEGDKQRRRA 424


>gnl|CDD|215783 pfam00199, Catalase, Catalase. 
          Length = 383

 Score = 29.9 bits (68), Expect = 0.070
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 1   MAIDNQNGAPNYYPNSFKGPE 21
           M   N  G PNY PNSF GP+
Sbjct: 363 MRFGNYGGEPNYEPNSFGGPQ 383


>gnl|CDD|232792 TIGR00033, aroC, chorismate synthase.  Homotetramer (noted in
           E.coli) suggests reason for good conservation [Amino
           acid biosynthesis, Aromatic amino acid family].
          Length = 351

 Score = 25.8 bits (57), Expect = 1.9
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 1   MAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNYNNGGLVLKSKRE 54
           + I N++   + Y +        PR   + Y  T  +K G  +  G    S RE
Sbjct: 74  LMIRNKDVRSSDYSD----IRTFPRPGHADY--TYWLKYGIDDYRGGGRSSARE 121


>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating
           P-type ATPase.  This model describes the P-type ATPase
           responsible for translocating calcium ions across the
           plasma membrane of eukaryotes , out of the cell. In some
           organisms, this type of pump may also be found in
           vacuolar membranes. In humans and mice, at least, there
           are multiple isoforms of the PMCA pump with overlapping
           but not redundant functions. Accordingly, there are no
           human diseases linked to PMCA defects, although
           alterations of PMCA function do elicit physiological
           effects. The calcium P-type ATPases have been
           characterized as Type IIB based on a phylogenetic
           analysis which distinguishes this group from the Type
           IIA SERCA calcium pump. A separate analysis divides Type
           IIA into sub-types (SERCA and PMR1) which are modelled
           by TIGR01116 and TIGR01522. This model is well separated
           from those.
          Length = 944

 Score = 25.5 bits (56), Expect = 2.5
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 33  ATGDVKRGNYNNGGLVLKSKREVQDRRKPAVPRTNLIC 70
           A  +  R +Y N GL L     ++D  +P V      C
Sbjct: 557 APEEFPRKDYPNKGLTLIGVVGIKDPLRPGVREAVQEC 594


>gnl|CDD|184971 PRK15009, PRK15009, GDP-mannose pyrophosphatase NudK;
          Provisional.
          Length = 191

 Score = 24.8 bits (54), Expect = 3.5
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 4/27 (14%)

Query: 32 NATGDVKRGNYNNGGLVLKSKREVQDR 58
          N T D+ R +    G V++ KREV DR
Sbjct: 22 NITYDLTRKD----GEVIRHKREVYDR 44


>gnl|CDD|226484 COG3976, COG3976, Uncharacterized protein conserved in bacteria
          [Function unknown].
          Length = 135

 Score = 24.5 bits (53), Expect = 5.4
 Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 4/59 (6%)

Query: 9  APNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNYNNGG----LVLKSKREVQDRRKPAV 63
                 S     P          A    K G Y         +L+ +  ++  R  A+
Sbjct: 20 IGVPQFRSAYPNAPVRVVRVGMKPAAHKYKDGVYTGSADAYYGILQVQVTIKGGRITAI 78


>gnl|CDD|215328 PLN02609, PLN02609, catalase.
          Length = 492

 Score = 24.3 bits (53), Expect = 7.3
 Identities = 6/18 (33%), Positives = 9/18 (50%), Gaps = 3/18 (16%)

Query: 10  PNYYPNSF---KGPEPTP 24
            NY+P+ F   +  E  P
Sbjct: 390 VNYFPSRFDPVRHAERVP 407


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.312    0.133    0.415 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,506,105
Number of extensions: 246398
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 11
Length of query: 70
Length of database: 10,937,602
Length adjustment: 40
Effective length of query: 30
Effective length of database: 9,163,442
Effective search space: 274903260
Effective search space used: 274903260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.4 bits)