RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8830
(70 letters)
>1m7s_A Catalase; beta barrel, alpha helical domain, oxidoreductase; HET:
HEM; 1.80A {Pseudomonas syringae} SCOP: e.5.1.1
Length = 484
Score = 49.8 bits (120), Expect = 3e-09
Identities = 5/42 (11%), Positives = 14/42 (33%)
Query: 1 MAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNY 42
+ + NY P+ + + +S +G ++
Sbjct: 365 LNTGHTTSGVNYEPSRLEPRPADDKARYSELPLSGTTQQAKI 406
>1si8_A Catalase; N-terminal ARM, anti-parallel beta-barrel, wrapping
region, terminal helical region, tetramer, heme group,
oxidoreducta; HET: HEM; 2.30A {Enterococcus faecalis}
SCOP: e.5.1.1
Length = 484
Score = 49.5 bits (119), Expect = 4e-09
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 1 MAIDNQNGAPNYYPNSF-KGPEPTPRGAWSTYNATGDVKRGNYNN 44
M +N N NY PNS+ + P+ P S++ G+V +YN
Sbjct: 370 MRFNNGNSEINYEPNSYTETPKEDPTAKISSFEVEGNVGNYSYNQ 414
>2isa_A Catalase; peroxidase, heme, oxidoreductase, iron, hydrogen
peroxide; HET: OMT HEM; 1.97A {Vibrio salmonicida} PDB:
1m85_A* 1mqf_A* 1nm0_A* 2cag_A* 2cah_A* 1e93_A* 1h7k_A*
1h6n_A* 3hb6_A*
Length = 483
Score = 46.4 bits (111), Expect = 5e-08
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 1 MAID-NQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNY 42
M +D N Y PN P + N G ++
Sbjct: 369 MRVDGNFGSTLGYEPNDQGQWAEQPDFSEPPLNLDGAAAHWDH 411
>1dgf_A Catalase; heme, NADPH, hydrogen peroxide, oxidoreductase; HET: HEM
NDP; 1.50A {Homo sapiens} SCOP: e.5.1.1 PDB: 1dgg_A*
1f4j_A* 1qqw_A* 1dgh_A* 1dgb_A* 3rgp_A* 3re8_A* 3rgs_A*
3nwl_A* 4blc_A* 1th2_A* 1th3_A* 1th4_A* 1tgu_A* 7cat_A*
8cat_A*
Length = 497
Score = 46.0 bits (110), Expect = 7e-08
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 1 MAID-NQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNY 42
M + NQ GAPNYYPNSF PE P + +G+V+R N
Sbjct: 388 MCMQDNQGGAPNYYPNSFGAPEQQPSALEHSIQYSGEVRRFNT 430
>1gwe_A Catalase; oxidoreductase, hdyrogen-peroxide:hydrogen peroxide
oxidoreductase; HET: HEM; 0.88A {Micrococcus luteus}
SCOP: e.5.1.1 PDB: 1gwh_A* 1hbz_A* 1gwf_A*
Length = 503
Score = 46.1 bits (110), Expect = 7e-08
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 1 MAIDNQNGAPNYYPNSFKGPEPTPRGA-WSTYNATGDVKRGNY 42
M D+ Y PNS G + A G + R
Sbjct: 376 MWYDHTGDRSTYVPNSNGDSWSDETGPVDDGWEADGTLTREAQ 418
>1qwl_A KATA catalase; beta barrel, azide complex, oxyferryl complex,
oxidoreductas; HET: HEM; 1.60A {Helicobacter pylori}
SCOP: e.5.1.1 PDB: 1qwm_A* 2a9e_A* 2iqf_A*
Length = 505
Score = 46.0 bits (110), Expect = 8e-08
Identities = 8/40 (20%), Positives = 11/40 (27%)
Query: 1 MAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRG 40
M NY P+S G + +N K
Sbjct: 372 MQNGYYGSLQNYTPSSLPGYKEDKSARDPKFNLAHIEKEF 411
>2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A
{Exiguobacterium oxidotolerans}
Length = 491
Score = 44.5 bits (106), Expect = 2e-07
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 1 MAIDNQNGAPNYYPNSFKG-PEPTPRGAWSTYNATGDVKR 39
M Q + NY PN ++ P+ TP T D+
Sbjct: 372 MPFKQQTSSVNYEPNRYQDEPKQTPEYTEDTQPLHDDIHG 411
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET:
HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Length = 715
Score = 39.3 bits (92), Expect = 2e-05
Identities = 13/46 (28%), Positives = 14/46 (30%), Gaps = 4/46 (8%)
Query: 1 MAIDNQNGAPNYYPNSFKG--PEPTPRGAWSTYNA--TGDVKRGNY 42
M G NYYPN F P G + Y G R
Sbjct: 391 MRHTISRGTVNYYPNRFDACPPASLKEGGYLEYAQKVAGIKARARS 436
>1a4e_A Catalase A; oxidoreductase, peroxidase; HET: HEM; 2.40A
{Saccharomyces cerevisiae} SCOP: e.5.1.1
Length = 488
Score = 39.1 bits (92), Expect = 2e-05
Identities = 6/46 (13%), Positives = 11/46 (23%), Gaps = 3/46 (6%)
Query: 1 MAID-NQNGAPNYYPNSFKGPEPTPRGAWSTY--NATGDVKRGNYN 43
M ++ N P Y N + G ++
Sbjct: 376 MNVNGNFGSEPTYLANDKSYTYIQQDRPIQQHQEVWNGPAIPYHWA 421
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A
{Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A*
3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A*
4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A*
1gg9_A* 1ggf_A* ...
Length = 753
Score = 38.9 bits (91), Expect = 2e-05
Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 8/50 (16%)
Query: 1 MAIDNQNGAPNYYPNSFKGPEPTP------RGAWSTYNA--TGDVKRGNY 42
+ NY PNS P RG + +Y G+ R
Sbjct: 449 HRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERS 498
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase,
peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Length = 688
Score = 37.4 bits (87), Expect = 9e-05
Identities = 3/28 (10%), Positives = 5/28 (17%)
Query: 1 MAIDNQNGAPNYYPNSFKGPEPTPRGAW 28
+Y P+ P
Sbjct: 392 GQAWIHKNIHHYSPSYLNKGYPAQANQT 419
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium
janthinellum} PDB: 2xf2_A*
Length = 688
Score = 36.1 bits (83), Expect = 3e-04
Identities = 7/50 (14%), Positives = 12/50 (24%), Gaps = 8/50 (16%)
Query: 1 MAIDNQNGAPNYYPNSFKGPEPTPRGAWS--------TYNATGDVKRGNY 42
+ Y PN+ P A+G ++R
Sbjct: 384 GQMFIPLDPNAYSPNTENKGSPKQANETVGKGFFTAPERTASGKLQRTLS 433
>2xq1_A Peroxisomal catalase; oxidoreductase, hydrogen peroxide
detoxification, PTS1; HET: HEM; 2.90A {Pichia angusta}
Length = 509
Score = 35.3 bits (82), Expect = 4e-04
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 1 MAIDNQNGAPNYYPNSFKGP-----EPTPRGAWSTYNATGDVKRGNY 42
M +D G Y N++ P P G TG+V ++
Sbjct: 385 MCVDGNLGGTPNYANAYNCPIQYAVSPKASGNKPDEKYTGEVVPYHW 431
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.133 0.415
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,028,575
Number of extensions: 45504
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 13
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.5 bits)