RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8830
         (70 letters)



>d1m7sa_ e.5.1.1 (A:) Catalase I {Pseudomonas syringae [TaxId: 317]}
          Length = 484

 Score = 41.8 bits (98), Expect = 1e-06
 Identities = 5/42 (11%), Positives = 14/42 (33%)

Query: 1   MAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRGNY 42
           +   +     NY P+  +      +  +S    +G  ++   
Sbjct: 365 LNTGHTTSGVNYEPSRLEPRPADDKARYSELPLSGTTQQAKI 406


>d1dgfa_ e.5.1.1 (A:) Catalase I {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 497

 Score = 41.0 bits (96), Expect = 1e-06
 Identities = 19/36 (52%), Positives = 23/36 (63%)

Query: 4   DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKR 39
           DNQ GAPNYYPNSF  PE  P     +   +G+V+R
Sbjct: 392 DNQGGAPNYYPNSFGAPEQQPSALEHSIQYSGEVRR 427


>d1si8a_ e.5.1.1 (A:) Catalase I {Enterococcus faecalis [TaxId:
           1351]}
          Length = 474

 Score = 40.6 bits (95), Expect = 2e-06
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 1   MAIDNQNGAPNYYPNSFK-GPEPTPRGAWSTYNATGDVKRGNYN 43
           M  +N N   NY PNS+   P+  P    S++   G+V   +YN
Sbjct: 367 MRFNNGNSEINYEPNSYTETPKEDPTAKISSFEVEGNVGNYSYN 410


>d1qwla_ e.5.1.1 (A:) Catalase I {Helicobacter pylori [TaxId: 210]}
          Length = 491

 Score = 37.2 bits (86), Expect = 4e-05
 Identities = 8/40 (20%), Positives = 11/40 (27%)

Query: 1   MAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRG 40
           M         NY P+S  G +         +N     K  
Sbjct: 372 MQNGYYGSLQNYTPSSLPGYKEDKSARDPKFNLAHIEKEF 411


>d1gwea_ e.5.1.1 (A:) Catalase I {Micrococcus lysodeikticus [TaxId:
           1270]}
          Length = 498

 Score = 35.7 bits (82), Expect = 1e-04
 Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 1/43 (2%)

Query: 1   MAIDNQNGAPNYYPNSFKGPEPTPRGAW-STYNATGDVKRGNY 42
           M  D+      Y PNS         G     + A G + R   
Sbjct: 371 MWYDHTGDRSTYVPNSNGDSWSDETGPVDDGWEADGTLTREAQ 413


>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
          Length = 476

 Score = 33.0 bits (75), Expect = 0.001
 Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 1/40 (2%)

Query: 1   MAID-NQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKR 39
           M +D N      Y PNS    +  P       +  G    
Sbjct: 367 MRVDGNSGNGITYEPNSGGVFQEQPDFKEPPLSIEGAADH 406


>d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII
           [TaxId: 562]}
          Length = 571

 Score = 31.8 bits (72), Expect = 0.003
 Identities = 6/24 (25%), Positives = 7/24 (29%)

Query: 1   MAIDNQNGAPNYYPNSFKGPEPTP 24
             +       NY PNS     P  
Sbjct: 423 HRMGIDTNPANYEPNSINDNWPRE 446


>d1a4ea_ e.5.1.1 (A:) Catalase I {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 488

 Score = 29.1 bits (65), Expect = 0.032
 Identities = 5/42 (11%), Positives = 8/42 (19%), Gaps = 2/42 (4%)

Query: 4   DNQNGAPNYYPNSFKGPEPTPRGAWSTYNAT--GDVKRGNYN 43
            N    P Y  N               +     G     ++ 
Sbjct: 380 GNFGSEPTYLANDKSYTYIQQDRPIQQHQEVWNGPAIPYHWA 421


>d1or7c_ a.180.1.1 (C:) N-terminal, cytoplasmic domain of
          anti-sigmaE factor RseA {Escherichia coli [TaxId: 562]}
          Length = 66

 Score = 26.2 bits (58), Expect = 0.11
 Identities = 5/19 (26%), Positives = 9/19 (47%)

Query: 25 RGAWSTYNATGDVKRGNYN 43
          +  W +Y+   D  RG+  
Sbjct: 30 QKTWESYHLIRDSMRGDTP 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.133    0.415 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 252,553
Number of extensions: 9005
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 9
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.2 bits)