Query psy8831
Match_columns 88
No_of_seqs 118 out of 763
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 20:18:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8831.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8831hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.9 4.4E-22 1.5E-26 122.8 5.0 56 13-68 3-58 (63)
2 4gat_A Nitrogen regulatory pro 99.8 4.8E-22 1.6E-26 123.5 4.3 58 14-71 6-63 (66)
3 2vut_I AREA, nitrogen regulato 99.8 7.9E-22 2.7E-26 113.6 3.6 42 18-59 2-43 (43)
4 1gnf_A Transcription factor GA 99.8 3.1E-21 1.1E-25 112.6 4.6 43 16-58 3-45 (46)
5 4hc9_A Trans-acting T-cell-spe 99.8 1.1E-19 3.6E-24 122.8 5.2 60 7-66 49-108 (115)
6 2kae_A GATA-type transcription 99.8 5E-20 1.7E-24 115.9 1.7 51 13-64 4-56 (71)
7 4hc9_A Trans-acting T-cell-spe 99.7 7.9E-18 2.7E-22 113.6 4.8 46 15-60 3-48 (115)
8 1dl6_A Transcription factor II 89.7 0.16 5.5E-06 29.6 1.8 34 16-51 10-43 (58)
9 3k7a_M Transcription initiatio 87.1 0.25 8.5E-06 37.2 1.8 37 13-49 17-53 (345)
10 2owa_A Arfgap-like finger doma 86.6 0.32 1.1E-05 33.1 1.9 39 15-54 34-72 (138)
11 2iqj_A Stromal membrane-associ 86.3 0.35 1.2E-05 32.7 2.0 38 15-53 25-62 (134)
12 2crr_A Stromal membrane-associ 85.5 0.45 1.5E-05 32.3 2.3 38 15-53 27-64 (141)
13 1k81_A EIF-2-beta, probable tr 84.6 0.085 2.9E-06 28.3 -1.4 28 19-46 2-29 (36)
14 3cw2_K Translation initiation 84.4 0.46 1.6E-05 32.4 1.9 29 18-46 104-132 (139)
15 2crw_A ARF GAP 3, ADP-ribosyla 84.0 0.61 2.1E-05 32.1 2.4 40 14-54 26-65 (149)
16 3dwd_A ADP-ribosylation factor 84.0 0.69 2.4E-05 32.0 2.7 40 14-54 35-74 (147)
17 2d74_B Translation initiation 83.0 0.42 1.4E-05 32.9 1.3 29 18-46 105-133 (148)
18 1pft_A TFIIB, PFTFIIBN; N-term 81.2 0.33 1.1E-05 26.9 0.1 32 17-50 5-36 (50)
19 2p57_A GTPase-activating prote 81.1 0.53 1.8E-05 32.4 1.2 39 15-54 35-73 (144)
20 2b0o_E UPLC1; arfgap, structur 80.1 1.1 3.8E-05 32.1 2.7 40 13-53 38-77 (301)
21 1nee_A EIF-2-beta, probable tr 80.0 0.48 1.6E-05 32.3 0.7 29 18-46 103-131 (138)
22 2olm_A Nucleoporin-like protei 77.1 1.1 3.9E-05 30.3 1.9 38 15-53 23-60 (140)
23 3k1f_M Transcription initiatio 76.9 0.56 1.9E-05 33.9 0.3 36 13-48 17-52 (197)
24 3sub_A ADP-ribosylation factor 75.4 1.4 4.9E-05 30.9 2.0 38 16-54 21-58 (163)
25 1ovx_A ATP-dependent CLP prote 72.5 2 6.8E-05 26.1 1.9 29 17-46 18-48 (67)
26 4bbr_M Transcription initiatio 71.9 0.59 2E-05 35.4 -0.7 32 16-47 20-51 (345)
27 2g2k_A EIF-5, eukaryotic trans 68.8 0.9 3.1E-05 32.0 -0.3 29 18-46 97-127 (170)
28 2ds5_A CLPX, ATP-dependent CLP 68.6 2.8 9.6E-05 24.0 1.9 30 16-46 10-41 (51)
29 3o47_A ADP-ribosylation factor 67.2 2.3 7.7E-05 31.2 1.6 39 15-54 35-73 (329)
30 2e9h_A EIF-5, eukaryotic trans 65.5 1.2 4E-05 31.0 -0.2 29 18-46 104-134 (157)
31 3jue_A Arfgap with coiled-coil 65.4 4.2 0.00014 30.4 2.8 40 13-53 41-80 (368)
32 1dcq_A PYK2-associated protein 64.4 3.8 0.00013 28.8 2.3 40 14-54 14-53 (278)
33 1qyp_A RNA polymerase II; tran 61.6 0.87 3E-05 25.9 -1.3 33 17-49 15-54 (57)
34 3lju_X ARF-GAP with dual PH do 56.0 3.4 0.00012 31.4 0.9 34 16-50 33-66 (386)
35 1ynw_B Retinoic acid receptor 52.5 12 0.00039 23.8 2.8 31 17-51 3-33 (99)
36 1tfi_A Transcriptional elongat 49.2 2.1 7.3E-05 24.1 -1.0 35 15-49 7-48 (50)
37 2ebl_A COUP transcription fact 48.0 9.5 0.00032 23.7 1.9 34 15-52 5-38 (89)
38 2han_B Ecdysone receptor; tran 47.4 7.1 0.00024 25.6 1.2 33 15-51 6-38 (119)
39 3po3_S Transcription elongatio 46.8 4 0.00014 28.4 -0.0 34 16-49 136-176 (178)
40 3lvq_E ARF-GAP with SH3 domain 45.9 14 0.00047 28.0 2.8 40 13-53 19-58 (497)
41 1dsz_A RAR-alpha, retinoic aci 44.0 8.5 0.00029 23.7 1.2 33 16-52 3-35 (86)
42 1pqv_S STP-alpha, transcriptio 41.4 5.2 0.00018 29.9 -0.2 35 16-50 267-308 (309)
43 2nll_B Protein (thyroid hormon 41.0 10 0.00035 24.2 1.2 31 18-52 2-32 (103)
44 1hcq_A Protein (estrogen recep 41.0 11 0.00037 23.2 1.3 33 16-52 3-35 (84)
45 1wig_A KIAA1808 protein; LIM d 39.9 11 0.00037 21.6 1.1 21 36-56 51-71 (73)
46 4hn5_A Glucocorticoid receptor 39.9 8.7 0.0003 25.2 0.8 32 16-51 28-59 (117)
47 3dzy_D Peroxisome proliferator 37.1 22 0.00077 27.1 2.8 33 15-51 48-80 (419)
48 1kb2_A Vitamin D3 receptor; VD 36.8 12 0.00042 24.1 1.1 32 16-51 5-36 (110)
49 2zjr_Z 50S ribosomal protein L 36.0 7.3 0.00025 22.8 -0.1 27 13-47 26-52 (60)
50 1lo1_A Steroid hormone recepto 35.3 16 0.00054 23.1 1.4 32 16-51 3-34 (98)
51 2han_A Protein ultraspiracle; 35.1 12 0.00043 23.3 0.9 32 16-51 9-40 (93)
52 3g9m_A Glucocorticoid receptor 34.1 13 0.00046 22.9 0.9 31 17-51 2-32 (90)
53 1twf_L ABC10-alpha, DNA-direct 33.4 10 0.00034 22.8 0.3 29 14-46 25-53 (70)
54 1nui_A DNA primase/helicase; z 32.6 12 0.00042 26.2 0.6 29 17-47 14-42 (255)
55 3v2d_5 50S ribosomal protein L 32.2 6.5 0.00022 23.0 -0.7 27 14-48 27-53 (60)
56 1twf_I B12.6, DNA-directed RNA 32.2 9.7 0.00033 24.7 0.0 37 16-52 71-114 (122)
57 1dsz_B RXR-alpha, retinoic aci 32.2 14 0.00047 22.8 0.7 32 16-51 4-35 (85)
58 1d4u_A Nucleotide excision rep 30.8 17 0.00059 23.7 1.1 28 17-46 5-34 (111)
59 1cit_A NGFI-B, protein (orphan 30.7 17 0.00057 22.6 0.9 29 19-51 2-30 (89)
60 2l1q_A Liver-expressed antimic 30.6 14 0.00046 20.4 0.4 6 28-33 2-7 (40)
61 1a6y_A Orphan nuclear receptor 30.4 16 0.00053 22.9 0.8 32 17-52 7-38 (94)
62 3cng_A Nudix hydrolase; struct 30.1 16 0.00053 24.1 0.8 30 17-46 3-33 (189)
63 2a66_A Orphan nuclear receptor 29.1 11 0.00039 24.4 -0.0 33 15-51 7-39 (113)
64 3cbb_A HNF-4-alpha, hepatocyte 29.1 19 0.00066 21.7 1.0 30 19-52 2-31 (78)
65 3qt1_I DNA-directed RNA polyme 28.7 12 0.00041 24.9 0.0 33 17-49 92-131 (133)
66 1z2q_A LM5-1; membrane protein 28.4 62 0.0021 19.2 3.3 34 13-46 17-53 (84)
67 1chc_A Equine herpes virus-1 r 28.1 71 0.0024 17.2 3.3 44 16-59 4-47 (68)
68 3lpe_B DNA-directed RNA polyme 27.6 13 0.00044 21.7 0.0 14 19-32 15-28 (59)
69 3h0g_L DNA-directed RNA polyme 27.5 21 0.00073 21.1 1.0 28 15-46 19-46 (63)
70 3h0g_I DNA-directed RNA polyme 27.4 10 0.00035 24.2 -0.5 33 17-49 72-111 (113)
71 3mhs_E SAGA-associated factor 26.5 12 0.00041 24.1 -0.3 8 39-46 76-83 (96)
72 1wfk_A Zinc finger, FYVE domai 25.8 39 0.0013 20.6 2.0 31 14-44 6-39 (88)
73 1x4u_A Zinc finger, FYVE domai 25.7 42 0.0015 20.0 2.2 33 14-46 11-46 (84)
74 1zbd_B Rabphilin-3A; G protein 25.3 17 0.00058 24.1 0.3 7 39-45 99-105 (134)
75 2js4_A UPF0434 protein BB2007; 24.8 11 0.00037 22.6 -0.7 32 16-50 7-38 (70)
76 2jny_A Uncharacterized BCR; st 24.7 14 0.00048 22.0 -0.2 31 16-49 9-39 (67)
77 2djb_A Polycomb group ring fin 24.2 97 0.0033 17.0 4.2 47 13-59 11-57 (72)
78 2yw8_A RUN and FYVE domain-con 24.2 48 0.0016 19.7 2.2 33 14-46 16-51 (82)
79 2kgo_A Uncharacterized protein 23.7 43 0.0015 21.7 2.0 38 16-53 55-92 (108)
80 1y02_A CARP2, FYVE-ring finger 23.0 41 0.0014 21.9 1.8 20 14-33 16-35 (120)
81 2hf1_A Tetraacyldisaccharide-1 22.3 14 0.00049 21.9 -0.5 30 17-49 8-37 (68)
82 1nyp_A Pinch protein; LIM doma 21.4 31 0.0011 18.8 0.9 10 36-45 50-59 (66)
83 2jr6_A UPF0434 protein NMA0874 21.2 16 0.00054 21.7 -0.5 31 16-49 7-37 (68)
84 2d8z_A Four and A half LIM dom 21.2 51 0.0017 18.0 1.8 10 36-45 50-59 (70)
85 1x64_A Alpha-actinin-2 associa 20.9 45 0.0015 19.4 1.6 14 16-29 24-37 (89)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.85 E-value=4.4e-22 Score=122.84 Aligned_cols=56 Identities=52% Similarity=0.908 Sum_probs=48.9
Q ss_pred CCCCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCCCCCccCCCchhhcc
Q psy8831 13 NKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKIMPPIESMIS 68 (88)
Q Consensus 13 ~~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~Rp~~~~~~~~~~~~ 68 (88)
.......|++|++++||+||+|++|++|||||||||++++..||+.+.....+...
T Consensus 3 ~~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~~RP~~~~~~~i~~R~ 58 (63)
T 3dfx_A 3 ARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQTRN 58 (63)
T ss_dssp CCCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSSCCCGGGCCSSCCCCC
T ss_pred CCCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCCCCCcCcCCCcccccc
Confidence 45678899999999999999999999999999999999999999998755444333
No 2
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.85 E-value=4.8e-22 Score=123.54 Aligned_cols=58 Identities=36% Similarity=0.771 Sum_probs=50.7
Q ss_pred CCCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCCCCCccCCCchhhcccCC
Q psy8831 14 KRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKIMPPIESMISRNG 71 (88)
Q Consensus 14 ~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~Rp~~~~~~~~~~~~r~g 71 (88)
......|++|++++||+||+|++|.+|||||||||++|++.||+.++...++..+|.+
T Consensus 6 ~~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~R~~ 63 (66)
T 4gat_A 6 QNGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSLKTDVIKKRNRNS 63 (66)
T ss_dssp SSSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCSCCCGGGCCSCCCCCCCSC
T ss_pred CCCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCCCCchhhccccccccccCC
Confidence 3568999999999999999999999999999999999999999999866655555543
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.84 E-value=7.9e-22 Score=113.64 Aligned_cols=42 Identities=45% Similarity=1.023 Sum_probs=40.0
Q ss_pred cccccCCCCCCCccccCCCCCCccchhHHHHhhhCCCCCCcc
Q psy8831 18 VSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKI 59 (88)
Q Consensus 18 ~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~Rp~~~ 59 (88)
..|++|++++||+||+|++|++|||||||||++|++.||+.+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~RP~~l 43 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSL 43 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSSCCCCCC
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCCCCCCCC
Confidence 579999999999999999999999999999999999999864
No 4
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.83 E-value=3.1e-21 Score=112.57 Aligned_cols=43 Identities=42% Similarity=0.841 Sum_probs=40.7
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCCCCCc
Q psy8831 16 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEK 58 (88)
Q Consensus 16 ~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~Rp~~ 58 (88)
....|++|++++||+||++++|.+|||||||||++++++||+.
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~RP~~ 45 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLI 45 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSCCCCC
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCCCCCC
Confidence 4678999999999999999999999999999999999999974
No 5
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.78 E-value=1.1e-19 Score=122.78 Aligned_cols=60 Identities=50% Similarity=0.875 Sum_probs=51.2
Q ss_pred cccccCCCCCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCCCCCccCCCchhh
Q psy8831 7 IREQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKIMPPIESM 66 (88)
Q Consensus 7 ~r~~~~~~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~Rp~~~~~~~~~~ 66 (88)
+++..........|+||++++||+||++++|++|||||||||++|++.||+.+....+..
T Consensus 49 KKR~~~~~~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~~rp~~~~~~~i~~ 108 (115)
T 4hc9_A 49 KRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQT 108 (115)
T ss_dssp CCCCCCCCCTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCGGGCCSSCCC
T ss_pred cccccccccccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCCCCCccccccchhh
Confidence 344445567789999999999999999999999999999999999999999997554433
No 6
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.77 E-value=5e-20 Score=115.88 Aligned_cols=51 Identities=27% Similarity=0.564 Sum_probs=42.2
Q ss_pred CCCCCcccccCCCCCCCcccc--CCCCCCccchhHHHHhhhCCCCCCccCCCch
Q psy8831 13 NKRSGVSCANCSTTCTTLWRR--NNNGEPVCNACGLIMNTVDINAPEKIMPPIE 64 (88)
Q Consensus 13 ~~~~~~~C~nC~tt~Tp~WRr--g~~G~~lCNaCgl~~~~~~~~Rp~~~~~~~~ 64 (88)
.......|+||+|++||+||+ ++.| +|||||||||+++++.||+.++...+
T Consensus 4 ~~~~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~~RP~~~~~~~~ 56 (71)
T 2kae_A 4 MNKKSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKTRPVTAVNKYQ 56 (71)
T ss_dssp ----CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHSCCCTHHHHHHH
T ss_pred CCCCCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCCCCCcccchhhh
Confidence 345678999999999999999 5666 89999999999999999999875443
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.70 E-value=7.9e-18 Score=113.58 Aligned_cols=46 Identities=41% Similarity=0.789 Sum_probs=40.8
Q ss_pred CCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCCCCCccC
Q psy8831 15 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKIM 60 (88)
Q Consensus 15 ~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~Rp~~~~ 60 (88)
...++|+||++++||+||++++|++||||||||++.++++||+...
T Consensus 3 ~~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~Kp 48 (115)
T 4hc9_A 3 HMGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKP 48 (115)
T ss_dssp ---CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSC
T ss_pred CCCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccc
Confidence 3578999999999999999999999999999999999999997653
No 8
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=89.66 E-value=0.16 Score=29.65 Aligned_cols=34 Identities=26% Similarity=0.632 Sum_probs=25.0
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchhHHHHhhh
Q psy8831 16 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTV 51 (88)
Q Consensus 16 ~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~ 51 (88)
....|.+|+.++ +-.....|.++|..|||-+.-+
T Consensus 10 ~~~~Cp~C~~~~--lv~D~~~ge~vC~~CGlVl~e~ 43 (58)
T 1dl6_A 10 PRVTCPNHPDAI--LVEDYRAGDMICPECGLVVGDR 43 (58)
T ss_dssp SCCSBTTBSSSC--CEECSSSCCEECTTTCCEECCS
T ss_pred ccccCcCCCCCc--eeEeCCCCeEEeCCCCCEEecc
Confidence 445799998755 5445577889999999966443
No 9
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=87.09 E-value=0.25 Score=37.22 Aligned_cols=37 Identities=27% Similarity=0.662 Sum_probs=26.5
Q ss_pred CCCCCcccccCCCCCCCccccCCCCCCccchhHHHHh
Q psy8831 13 NKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMN 49 (88)
Q Consensus 13 ~~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~ 49 (88)
.......|.+|+...+-+-.....|.++|..||+-..
T Consensus 17 ~~~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 17 NLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred cccCCCcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 4445678999998753343355688999999999553
No 10
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=86.60 E-value=0.32 Score=33.13 Aligned_cols=39 Identities=13% Similarity=0.400 Sum_probs=32.4
Q ss_pred CCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCC
Q psy8831 15 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDIN 54 (88)
Q Consensus 15 ~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~ 54 (88)
.....|++|++. -|.|-.-.-|..+|-.|.-..|..|++
T Consensus 34 p~N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~h 72 (138)
T 2owa_A 34 PENRTCFDCESR-NPTWLSLSFAVFICLNCSSDHRKMGVH 72 (138)
T ss_dssp GGGGBCTTTCCB-SCCEEETTTTEEECHHHHHHHHTTCTT
T ss_pred cCCCcCCCCcCC-CCCeEEecCCEEEhHhhhHHHhCCCCC
Confidence 357899999976 499999999999999998877776654
No 11
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=86.31 E-value=0.35 Score=32.67 Aligned_cols=38 Identities=24% Similarity=0.545 Sum_probs=32.1
Q ss_pred CCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCC
Q psy8831 15 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDI 53 (88)
Q Consensus 15 ~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~ 53 (88)
.....|++|++. -|.|-.-.-|..+|-.|.-..+..|+
T Consensus 25 p~N~~CaDCg~~-~P~WaS~n~GvfiC~~CsgiHR~lG~ 62 (134)
T 2iqj_A 25 EDNKFCADCQSK-GPRWASWNIGVFICIRCAGIHRNLGV 62 (134)
T ss_dssp GGGGBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHHCT
T ss_pred cCCCcCCcCcCC-CCCeEEecCCEEEhHhhhHHHhcCCC
Confidence 457899999976 59999999999999999877777665
No 12
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.53 E-value=0.45 Score=32.34 Aligned_cols=38 Identities=24% Similarity=0.545 Sum_probs=31.6
Q ss_pred CCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCC
Q psy8831 15 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDI 53 (88)
Q Consensus 15 ~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~ 53 (88)
.....|++|++. -|.|-.-.-|..+|-.|.-..+..|+
T Consensus 27 p~N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~ 64 (141)
T 2crr_A 27 EDNKYCADCEAK-GPRWASWNIGVFICIRCAGIHRNLGV 64 (141)
T ss_dssp GGGSSCSSSCCS-SCCSEETTTTEECCHHHHHHHHHHCT
T ss_pred ccCCcCCCCCCC-CCCeEEeccCeEEhhhhhHhHhcCCC
Confidence 356799999976 59999999999999999877777664
No 13
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=84.61 E-value=0.085 Score=28.31 Aligned_cols=28 Identities=25% Similarity=0.530 Sum_probs=20.3
Q ss_pred ccccCCCCCCCccccCCCCCCccchhHH
Q psy8831 19 SCANCSTTCTTLWRRNNNGEPVCNACGL 46 (88)
Q Consensus 19 ~C~nC~tt~Tp~WRrg~~G~~lCNaCgl 46 (88)
.|..|+..+|-+=+++..-..-|+|||-
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~ 29 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGA 29 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCC
Confidence 5899999999987743221134999985
No 14
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=84.44 E-value=0.46 Score=32.40 Aligned_cols=29 Identities=34% Similarity=0.635 Sum_probs=19.9
Q ss_pred cccccCCCCCCCccccCCCCCCccchhHH
Q psy8831 18 VSCANCSTTCTTLWRRNNNGEPVCNACGL 46 (88)
Q Consensus 18 ~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl 46 (88)
-.|..|+..+|-+-+.+..=..-|+|||-
T Consensus 104 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa 132 (139)
T 3cw2_K 104 VECSTCKSLDTILKKEKKSWYIVCLACGA 132 (139)
T ss_dssp SSCCSSSSSCCCSCSSCSTTTSSCCC---
T ss_pred eECCCCCCcCcEEEEeCCeEEEEecCCCC
Confidence 67999999999998754322245999986
No 15
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.04 E-value=0.61 Score=32.13 Aligned_cols=40 Identities=15% Similarity=0.437 Sum_probs=33.1
Q ss_pred CCCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCC
Q psy8831 14 KRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDIN 54 (88)
Q Consensus 14 ~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~ 54 (88)
......|++|+.. -|.|-.-.-|..+|-.|.-..|..|++
T Consensus 26 ~p~N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~h 65 (149)
T 2crw_A 26 VPTNKVCFDCGAK-NPSWASITYGVFLCIDCSGSHRSLGVH 65 (149)
T ss_dssp STTTSBCSSSCCB-SCCCEETTTTEECCHHHHHHHHHHCTT
T ss_pred CcCCCcCCCCcCC-CCCcEEeccCEEEchhcchhhccCCCC
Confidence 3467899999964 699999999999999998877777754
No 16
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=83.97 E-value=0.69 Score=31.98 Aligned_cols=40 Identities=15% Similarity=0.389 Sum_probs=33.2
Q ss_pred CCCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCC
Q psy8831 14 KRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDIN 54 (88)
Q Consensus 14 ~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~ 54 (88)
......|++|++. -|.|-.-.-|-.+|-.|.-..|..|.+
T Consensus 35 ~p~N~~CaDCga~-~P~WaS~nlGvfiC~~CSgiHR~LG~h 74 (147)
T 3dwd_A 35 QDENNVCFECGAF-NPQWVSVTYGIWICLECSGRHRGLGVH 74 (147)
T ss_dssp STTTTBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHHCTT
T ss_pred CcCCCccCCCCCC-CCCeEEecccEeEhHhhChHHhcCCCC
Confidence 4467899999986 499999999999999998877776654
No 17
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=83.04 E-value=0.42 Score=32.94 Aligned_cols=29 Identities=31% Similarity=0.625 Sum_probs=21.7
Q ss_pred cccccCCCCCCCccccCCCCCCccchhHH
Q psy8831 18 VSCANCSTTCTTLWRRNNNGEPVCNACGL 46 (88)
Q Consensus 18 ~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl 46 (88)
..|..|+..+|-+-+.+..-..-|+|||-
T Consensus 105 VlC~~C~sPdT~L~k~~r~~~l~C~ACGa 133 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFHFLKCEACGA 133 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSBCCCCSSSCC
T ss_pred EECCCCCCcCcEEEEeCCEEEEEecCCCC
Confidence 46999999999998754322245999975
No 18
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=81.15 E-value=0.33 Score=26.93 Aligned_cols=32 Identities=28% Similarity=0.711 Sum_probs=22.6
Q ss_pred CcccccCCCCCCCccccCCCCCCccchhHHHHhh
Q psy8831 17 GVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNT 50 (88)
Q Consensus 17 ~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~ 50 (88)
...|-+|+.+ ++-.....|..+|..||+-+.-
T Consensus 5 ~~~CP~C~~~--~l~~d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTTEEEESSSCCBCCC
T ss_pred cEeCcCCCCc--ceEEcCCCCeEECcccCCcccc
Confidence 4579999873 4533445677899999996543
No 19
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=81.15 E-value=0.53 Score=32.38 Aligned_cols=39 Identities=15% Similarity=0.522 Sum_probs=32.2
Q ss_pred CCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCC
Q psy8831 15 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDIN 54 (88)
Q Consensus 15 ~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~ 54 (88)
.....|++|+.. -|.|-.-.-|..+|-.|.-..+..|++
T Consensus 35 p~N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~h 73 (144)
T 2p57_A 35 PTNKACFDCGAK-NPSWASITYGVFLCIDCSGVHRSLGVH 73 (144)
T ss_dssp GGGGBCTTTCCB-SCCEEEGGGTEEECHHHHHHHHHHCTT
T ss_pred CCCCcCCCCcCC-CCCeEEeccCEEEhhhchHHHcCCCCC
Confidence 357899999975 599999888999999998877777653
No 20
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=80.09 E-value=1.1 Score=32.12 Aligned_cols=40 Identities=18% Similarity=0.535 Sum_probs=32.1
Q ss_pred CCCCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCC
Q psy8831 13 NKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDI 53 (88)
Q Consensus 13 ~~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~ 53 (88)
.......|+.|+... |.|-.-.-|..+|-.|.-..+.-|.
T Consensus 38 ~~~~n~~c~dc~~~~-p~w~s~~~g~~~c~~cs~~hr~lg~ 77 (301)
T 2b0o_E 38 SRPGNSQCCDCGAAD-PTWLSTNLGVLTCIQCSGVHRELGV 77 (301)
T ss_dssp TSTTTTBCTTTCCBS-CCEEETTTTEEECHHHHHHHHHHCT
T ss_pred cCCCCCcCCCCCCCC-CCeEEeecCeEEcHHHHHHHHhhCC
Confidence 344678999999864 9999999999999999766665554
No 21
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=80.02 E-value=0.48 Score=32.26 Aligned_cols=29 Identities=31% Similarity=0.620 Sum_probs=21.5
Q ss_pred cccccCCCCCCCccccCCCCCCccchhHH
Q psy8831 18 VSCANCSTTCTTLWRRNNNGEPVCNACGL 46 (88)
Q Consensus 18 ~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl 46 (88)
-.|..|+..+|-+-+.+..=..-|+|||-
T Consensus 103 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRISLLKCEACGA 131 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTTEEECSTTSC
T ss_pred EECCCCCCcCcEEEEcCCeEEEEccCCCC
Confidence 46999999999998754222245999974
No 22
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=77.15 E-value=1.1 Score=30.30 Aligned_cols=38 Identities=16% Similarity=0.399 Sum_probs=30.9
Q ss_pred CCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCC
Q psy8831 15 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDI 53 (88)
Q Consensus 15 ~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~ 53 (88)
.....|++|++. -|.|-.-.-|..+|-.|.-..+..|+
T Consensus 23 p~N~~CaDCg~~-~P~WaS~n~GvfiC~~CsgiHR~LG~ 60 (140)
T 2olm_A 23 PHNRKCFDCDQR-GPTYVNMTVGSFVCTSCSGSLRGLNP 60 (140)
T ss_dssp GGGGSCTTTCSS-CCCEEETTTTEEECHHHHHHHTTSSS
T ss_pred cCCCcCCCCCCC-CCCceeeccCEEEchhccchhccCCC
Confidence 357899999975 69999999999999999776665554
No 23
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=76.93 E-value=0.56 Score=33.91 Aligned_cols=36 Identities=28% Similarity=0.672 Sum_probs=25.0
Q ss_pred CCCCCcccccCCCCCCCccccCCCCCCccchhHHHH
Q psy8831 13 NKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIM 48 (88)
Q Consensus 13 ~~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~ 48 (88)
.......|..|+...+-+--.-..|+++|..|||-.
T Consensus 17 ~ln~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVL 52 (197)
T 3k1f_M 17 NLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (197)
T ss_dssp CCCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBC
T ss_pred ccccCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCc
Confidence 334556899999855444334456889999999843
No 24
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=75.38 E-value=1.4 Score=30.86 Aligned_cols=38 Identities=21% Similarity=0.559 Sum_probs=31.8
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCC
Q psy8831 16 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDIN 54 (88)
Q Consensus 16 ~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~ 54 (88)
....|+.|++. -|.|-.-.-|-.+|-.|.-..|..|++
T Consensus 21 ~N~~CaDCga~-~P~WaS~nlGvflCi~CSGiHR~LG~h 58 (163)
T 3sub_A 21 SNNKCFDCGIS-NPDWVSVNHGIFLCINCSGVHRSLGVH 58 (163)
T ss_dssp GGGBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHTCTT
T ss_pred CCCccccCCCC-CCCeEEecCCeeEHHhhhHHhcCCCCC
Confidence 56799999985 699999999999999998777766654
No 25
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=72.53 E-value=2 Score=26.10 Aligned_cols=29 Identities=14% Similarity=0.391 Sum_probs=20.7
Q ss_pred CcccccCCCCCCCccc--cCCCCCCccchhHH
Q psy8831 17 GVSCANCSTTCTTLWR--RNNNGEPVCNACGL 46 (88)
Q Consensus 17 ~~~C~nC~tt~Tp~WR--rg~~G~~lCNaCgl 46 (88)
...|+-||-++..+=+ .|+ |.++||.|.-
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGp-gvyICdeCI~ 48 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGP-SVYICDECVD 48 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECS-SCEEEHHHHH
T ss_pred CcEecCCCCCHHHHcccCCCC-CCChhHHHHH
Confidence 3689999988765422 344 5689999975
No 26
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=71.90 E-value=0.59 Score=35.41 Aligned_cols=32 Identities=28% Similarity=0.706 Sum_probs=22.4
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchhHHH
Q psy8831 16 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLI 47 (88)
Q Consensus 16 ~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~ 47 (88)
....|.+|+...+-+--.-..|+++|..|||-
T Consensus 20 ~~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlV 51 (345)
T 4bbr_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (345)
T ss_dssp --CCCSSCCCSSCCEEEEGGGTEEEETTTCBE
T ss_pred cCCcCCCCCCCCCceeEECCCCcEEeCCCCCC
Confidence 45579999974444444456788999999974
No 27
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=68.82 E-value=0.9 Score=32.03 Aligned_cols=29 Identities=31% Similarity=0.665 Sum_probs=21.7
Q ss_pred cccccCCCCCCCccccCCCCC--CccchhHH
Q psy8831 18 VSCANCSTTCTTLWRRNNNGE--PVCNACGL 46 (88)
Q Consensus 18 ~~C~nC~tt~Tp~WRrg~~G~--~lCNaCgl 46 (88)
..|..|+..+|-+-+....+. .-|+|||-
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa 127 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGY 127 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCC
Confidence 369999999999977433333 34999985
No 28
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=68.57 E-value=2.8 Score=23.96 Aligned_cols=30 Identities=13% Similarity=0.379 Sum_probs=21.0
Q ss_pred CCcccccCCCCCCCccc--cCCCCCCccchhHH
Q psy8831 16 SGVSCANCSTTCTTLWR--RNNNGEPVCNACGL 46 (88)
Q Consensus 16 ~~~~C~nC~tt~Tp~WR--rg~~G~~lCNaCgl 46 (88)
....|+-||-.+..+=+ .|+ |.+.||.|.-
T Consensus 10 ~~~~CSFCGk~~~ev~~LIaGp-gv~IC~eCi~ 41 (51)
T 2ds5_A 10 KLLYCSFCGKSQHEVRKLIAGP-SVYICDECVD 41 (51)
T ss_dssp CCCBCTTTCCBTTTSSCEEECS-SCEEEHHHHH
T ss_pred CCcEecCCCCCHHHhcccCCCC-CCEehHHHHH
Confidence 34689999988765422 343 5689999975
No 29
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=67.25 E-value=2.3 Score=31.17 Aligned_cols=39 Identities=15% Similarity=0.387 Sum_probs=31.7
Q ss_pred CCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCC
Q psy8831 15 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDIN 54 (88)
Q Consensus 15 ~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~ 54 (88)
.....|+.|+.. -|.|-.-.-|-.+|-.|.-..|..|.+
T Consensus 35 ~~n~~c~dc~~~-~~~~~~~~~~~~~c~~c~~~hr~~~~~ 73 (329)
T 3o47_A 35 DENNVCFECGAF-NPQWVSVTYGIWICLECSGRHRGLGVH 73 (329)
T ss_dssp TTTTBCTTTCCB-SCCEEEGGGTEEECHHHHHHHHHHCTT
T ss_pred CCCCcCCCCCCC-CCCeEEecCCEEEChhhhhhhcccCCC
Confidence 457799999974 689999889999999998777766554
No 30
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.51 E-value=1.2 Score=31.01 Aligned_cols=29 Identities=31% Similarity=0.665 Sum_probs=21.4
Q ss_pred cccccCCCCCCCccccCCCCC--CccchhHH
Q psy8831 18 VSCANCSTTCTTLWRRNNNGE--PVCNACGL 46 (88)
Q Consensus 18 ~~C~nC~tt~Tp~WRrg~~G~--~lCNaCgl 46 (88)
..|..|+..+|-+-.....+. .-|+|||-
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa 134 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGY 134 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCC
Confidence 479999999999976323333 34999985
No 31
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=65.41 E-value=4.2 Score=30.42 Aligned_cols=40 Identities=20% Similarity=0.558 Sum_probs=31.9
Q ss_pred CCCCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCC
Q psy8831 13 NKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDI 53 (88)
Q Consensus 13 ~~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~ 53 (88)
.......|++|+.. -|.|-.-.-|..+|-.|.=..+..|+
T Consensus 41 ~~~~n~~c~dc~~~-~p~w~s~~~g~~~c~~c~~~hr~lg~ 80 (368)
T 3jue_A 41 SVDGNAQCCDCREP-APEWASINLGVTLCIQCSGIHRSLGV 80 (368)
T ss_dssp TSTTTTBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHHCT
T ss_pred cCCCcCcCCCCCCC-CCCeEEecCCeEEcHhHHHHHhccCC
Confidence 34467899999985 69999999999999999765665553
No 32
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=64.38 E-value=3.8 Score=28.85 Aligned_cols=40 Identities=20% Similarity=0.508 Sum_probs=32.5
Q ss_pred CCCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCC
Q psy8831 14 KRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDIN 54 (88)
Q Consensus 14 ~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~ 54 (88)
......|+.|+.. -|.|-.-.-|..+|-.|.-..+..|.+
T Consensus 14 ~~~n~~c~dc~~~-~p~w~s~~~g~~~c~~c~~~hr~lg~~ 53 (278)
T 1dcq_A 14 MTGNDVCCDCGAP-DPTWLSTNLGILTCIECSGIHRELGVH 53 (278)
T ss_dssp STTTTBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHHCTT
T ss_pred CCCCCcCCCCCCC-CCCeEEecCCeEEcHHHHHHHhhcCCC
Confidence 3467899999987 479999999999999997777776654
No 33
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=61.59 E-value=0.87 Score=25.89 Aligned_cols=33 Identities=18% Similarity=0.514 Sum_probs=23.6
Q ss_pred CcccccCCCCCC----CccccCCCCC---CccchhHHHHh
Q psy8831 17 GVSCANCSTTCT----TLWRRNNNGE---PVCNACGLIMN 49 (88)
Q Consensus 17 ~~~C~nC~tt~T----p~WRrg~~G~---~lCNaCgl~~~ 49 (88)
...|..|+-.+. -.||..+++. +.|..||-.|+
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence 467999998552 2577777776 57999987654
No 34
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=55.97 E-value=3.4 Score=31.43 Aligned_cols=34 Identities=24% Similarity=0.585 Sum_probs=27.9
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchhHHHHhh
Q psy8831 16 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNT 50 (88)
Q Consensus 16 ~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~ 50 (88)
....|++|++. -|.|-.-.-|-.+|-.|.-..+.
T Consensus 33 ~N~~C~dC~~~-~p~w~s~~~g~~~C~~Csg~hr~ 66 (386)
T 3lju_X 33 GNARCADCGAP-DPDWASYTLGVFICLSCSGIHRN 66 (386)
T ss_dssp GGSBCTTTCCB-SCCEEETTTTEEECHHHHHHHHT
T ss_pred CCCcCccCCCC-CCCeEEecccEEEhhhhchHhhC
Confidence 45689999986 79999999999999999754443
No 35
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=52.46 E-value=12 Score=23.78 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=21.0
Q ss_pred CcccccCCCCCCCccccCCCCCCccchhHHHHhhh
Q psy8831 17 GVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTV 51 (88)
Q Consensus 17 ~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~ 51 (88)
...|..|+-..+-. --|.+.|+||..|+++.
T Consensus 3 ~~~C~VCg~~a~g~----hyGv~sC~aCk~FFRR~ 33 (99)
T 1ynw_B 3 KHICAICGDRSSGK----HYGVYSCEGCKGFFKRT 33 (99)
T ss_dssp --CBTTTBSCCCBC----CTTSCBCSHHHHHHHHH
T ss_pred CCCCceeCCCCcce----eeCccchHHHHHHHHhh
Confidence 35688898654432 24667899999998865
No 36
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=49.20 E-value=2.1 Score=24.13 Aligned_cols=35 Identities=26% Similarity=0.495 Sum_probs=24.3
Q ss_pred CCCcccccCCCCCCCcc----ccCCCCC---CccchhHHHHh
Q psy8831 15 RSGVSCANCSTTCTTLW----RRNNNGE---PVCNACGLIMN 49 (88)
Q Consensus 15 ~~~~~C~nC~tt~Tp~W----Rrg~~G~---~lCNaCgl~~~ 49 (88)
.....|..|+-.+.-.| |+.+++. +.|..||-.|+
T Consensus 7 t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred eCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 34568999998876544 4566665 56999987654
No 37
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=47.98 E-value=9.5 Score=23.75 Aligned_cols=34 Identities=21% Similarity=0.555 Sum_probs=23.8
Q ss_pred CCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhC
Q psy8831 15 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVD 52 (88)
Q Consensus 15 ~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~ 52 (88)
.....|.-|+-..+-. --|.+.|+||..|+++.-
T Consensus 5 ~~~~~C~VCg~~a~g~----hyGv~sC~aCk~FFRR~v 38 (89)
T 2ebl_A 5 SSGIECVVCGDKSSGK----HYGQFTCEGCKSFFKRSV 38 (89)
T ss_dssp CSSCBCTTTCSBCCSE----ETTEECCHHHHHHHHHHH
T ss_pred CCCCCCcEeCCCCcce----EeCchhhHHhhhhhheee
Confidence 4556799999654432 235567999999998764
No 38
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=47.38 E-value=7.1 Score=25.55 Aligned_cols=33 Identities=12% Similarity=0.331 Sum_probs=22.6
Q ss_pred CCCcccccCCCCCCCccccCCCCCCccchhHHHHhhh
Q psy8831 15 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTV 51 (88)
Q Consensus 15 ~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~ 51 (88)
.....|.-|+-..+-. --|.+.|+||..|+++.
T Consensus 6 ~~~~~C~VCg~~a~g~----hyGv~sC~aCk~FFRR~ 38 (119)
T 2han_B 6 VQEELCLVCGDRASGY----HYNALTCEGCKGFFRRS 38 (119)
T ss_dssp CCSCBCTTTCSBCCEE----ETTEEECHHHHHHHHHH
T ss_pred CCCCcCeEeCCcCCcc----eECchhHHhhHHhhhhh
Confidence 3467899999654322 23556799999988854
No 39
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=46.75 E-value=4 Score=28.36 Aligned_cols=34 Identities=21% Similarity=0.508 Sum_probs=23.2
Q ss_pred CCcccccCCCCCCCcc----ccCCCCC---CccchhHHHHh
Q psy8831 16 SGVSCANCSTTCTTLW----RRNNNGE---PVCNACGLIMN 49 (88)
Q Consensus 16 ~~~~C~nC~tt~Tp~W----Rrg~~G~---~lCNaCgl~~~ 49 (88)
....|..|+-.+.-.| |..+++. +.|..||-.|+
T Consensus 136 ~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 136 DRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 4568999998775433 3444444 56999998775
No 40
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=45.92 E-value=14 Score=28.00 Aligned_cols=40 Identities=18% Similarity=0.561 Sum_probs=31.3
Q ss_pred CCCCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCC
Q psy8831 13 NKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDI 53 (88)
Q Consensus 13 ~~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~ 53 (88)
.......|+.|+. .-|.|-.-.-|-.+|-.|.=..|.-|.
T Consensus 19 ~~~~n~~c~dc~~-~~p~w~s~~~~~~~c~~c~~~hr~lg~ 58 (497)
T 3lvq_E 19 SRPGNSQCCDCGA-ADPTWLSTNLGVLTCIQCSGVHRELGV 58 (497)
T ss_dssp TSTTTTBCTTTCC-BSCCEEETTTTEEECHHHHHHHHHHCT
T ss_pred cCCCCCcccCCCC-CCCCEEEechhHHhHHhhHHHHHhhcc
Confidence 3446789999995 568999999999999999765665543
No 41
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=44.00 E-value=8.5 Score=23.74 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=21.2
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchhHHHHhhhC
Q psy8831 16 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVD 52 (88)
Q Consensus 16 ~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~ 52 (88)
+...|.-|+-..+-. --|.+.|+||..|+++.-
T Consensus 3 ~~~~C~VCg~~a~g~----hyGv~sC~aCk~FFRR~v 35 (86)
T 1dsz_A 3 IYKPCFVCQDKSSGY----HYGVSACEGCKGFFRRSI 35 (86)
T ss_dssp ---CCTTTCSCCCSE----ETTEECCHHHHHHHHHHH
T ss_pred CCCCCcEECCCccce----eeCchhHHHHHHHHHHHh
Confidence 445799998654432 235567999999988653
No 42
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=41.40 E-value=5.2 Score=29.90 Aligned_cols=35 Identities=20% Similarity=0.507 Sum_probs=25.3
Q ss_pred CCcccccCCCCCCCcc----ccCCCCC---CccchhHHHHhh
Q psy8831 16 SGVSCANCSTTCTTLW----RRNNNGE---PVCNACGLIMNT 50 (88)
Q Consensus 16 ~~~~C~nC~tt~Tp~W----Rrg~~G~---~lCNaCgl~~~~ 50 (88)
....|..|+-.+.-.| |..++|. +.|..||-.|++
T Consensus 267 ~~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~f 308 (309)
T 1pqv_S 267 DRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWKF 308 (309)
T ss_pred ccccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCceec
Confidence 3568999998887655 4455554 569999987753
No 43
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=41.04 E-value=10 Score=24.16 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=21.1
Q ss_pred cccccCCCCCCCccccCCCCCCccchhHHHHhhhC
Q psy8831 18 VSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVD 52 (88)
Q Consensus 18 ~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~ 52 (88)
..|.-|+-..+-. --|.+-|+||..|+++.-
T Consensus 2 ~~C~VCgd~a~g~----hyGv~sC~aCk~FFRR~v 32 (103)
T 2nll_B 2 ELCVVCGDKATGY----HYRCITCEGCKGFFRRTI 32 (103)
T ss_dssp CBCTTTCSBCCSE----ETTEECCHHHHHHHHHHH
T ss_pred CCCeEeCCcCcCe----ecCcccHHHhhhhheecc
Confidence 4688888554332 235567999999988653
No 44
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=40.96 E-value=11 Score=23.19 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=23.0
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchhHHHHhhhC
Q psy8831 16 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVD 52 (88)
Q Consensus 16 ~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~ 52 (88)
....|.-|+-..+-. --|.+.|+||..|+++.-
T Consensus 3 ~~~~C~VCg~~a~g~----hyGv~sC~aCk~FFRR~v 35 (84)
T 1hcq_A 3 ETRYCAVCNDYASGY----HYGVWSCEGCKAFFKRSI 35 (84)
T ss_dssp CCCBCTTTCSBCCEE----ETTEEECHHHHHHHHHHH
T ss_pred CCCcCcEECCCCCCe----eeCccchHHhhhhhhhcc
Confidence 456799998654332 235567999999998763
No 45
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.89 E-value=11 Score=21.61 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=12.7
Q ss_pred CCCCccchhHHHHhhhCCCCC
Q psy8831 36 NGEPVCNACGLIMNTVDINAP 56 (88)
Q Consensus 36 ~G~~lCNaCgl~~~~~~~~Rp 56 (88)
+|.++|..|..........||
T Consensus 51 ~~~~yC~~C~~~~~~~~~~r~ 71 (73)
T 1wig_A 51 GSSIWHPACRQAARTEDSGPS 71 (73)
T ss_dssp TTEEECTTHHHHTSSSSCCSC
T ss_pred CCEEEChHHChHhhcccccCC
Confidence 456789998764444444443
No 46
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=39.88 E-value=8.7 Score=25.19 Aligned_cols=32 Identities=19% Similarity=0.488 Sum_probs=20.9
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchhHHHHhhh
Q psy8831 16 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTV 51 (88)
Q Consensus 16 ~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~ 51 (88)
....|.-|+-..+-. --|...|+||..|+++.
T Consensus 28 ~~~~C~VCgd~a~G~----HyGv~sC~aCk~FFRRs 59 (117)
T 4hn5_A 28 PPKLCLVCSDEASGC----HYGVLTCGSCKVFFKRA 59 (117)
T ss_dssp --CBCTTTCSBCCEE----ETTEEECHHHHHHHHHH
T ss_pred CCCcCCcCCCcCccc----ccCCcccchhhhhhhcc
Confidence 456799998644321 24556799999988754
No 47
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=37.09 E-value=22 Score=27.11 Aligned_cols=33 Identities=15% Similarity=0.495 Sum_probs=22.2
Q ss_pred CCCcccccCCCCCCCccccCCCCCCccchhHHHHhhh
Q psy8831 15 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTV 51 (88)
Q Consensus 15 ~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~ 51 (88)
.....|.-|+-..+-. -.|..-|++|..|+++.
T Consensus 48 ~~~~~C~vC~~~~~g~----hygv~~C~~C~~FFrR~ 80 (419)
T 3dzy_D 48 LMAIECRVCGDKASGF----HYGVHACEGCKGFFRRT 80 (419)
T ss_dssp --CCCCSSSCSCCCSB----CSSSBCCHHHHHHHHHH
T ss_pred CCCCcCeECCCcCCCC----ccCcccchhhhHHHccc
Confidence 3456799999654322 34667799999988764
No 48
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=36.77 E-value=12 Score=24.11 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=21.3
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchhHHHHhhh
Q psy8831 16 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTV 51 (88)
Q Consensus 16 ~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~ 51 (88)
....|.-|+-..+-. --|.+.|+||..|+++.
T Consensus 5 ~~~~C~VCg~~a~g~----hyGv~sC~aCk~FFRR~ 36 (110)
T 1kb2_A 5 VPRICGVCGDRATGF----HFNAMTCEGCKGFFRRS 36 (110)
T ss_dssp --CBCTTTCSBCCSE----ETTEECCHHHHHHHHHH
T ss_pred cCCCCcEeCCCCCce----EeCchhHhhhhhhheee
Confidence 346799998654332 23556799999998865
No 49
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=36.04 E-value=7.3 Score=22.78 Aligned_cols=27 Identities=19% Similarity=0.571 Sum_probs=18.6
Q ss_pred CCCCCcccccCCCCCCCccccCCCCCCccchhHHH
Q psy8831 13 NKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLI 47 (88)
Q Consensus 13 ~~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~ 47 (88)
+......|.+||...-| +.+|-.||.|
T Consensus 26 ~~p~l~~c~~cG~~~~p--------H~vc~~CG~Y 52 (60)
T 2zjr_Z 26 TAPNLTECPQCHGKKLS--------HHICPNCGYY 52 (60)
T ss_dssp CCCCCEECTTTCCEECT--------TBCCTTTCBS
T ss_pred cCCCceECCCCCCEeCC--------ceEcCCCCcC
Confidence 34456788888865322 3689999965
No 50
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=35.32 E-value=16 Score=23.10 Aligned_cols=32 Identities=19% Similarity=0.485 Sum_probs=22.3
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchhHHHHhhh
Q psy8831 16 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTV 51 (88)
Q Consensus 16 ~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~ 51 (88)
....|.-|+-..+-. --|.+.|+||..|+++.
T Consensus 3 ~~~~C~VCg~~a~g~----hyGv~sC~aCk~FFRR~ 34 (98)
T 1lo1_A 3 PKRLCLVCGDIASGY----HYGVASCEACKAFFKRT 34 (98)
T ss_dssp CCCEETTTTEECSEE----SSSSEECHHHHHHHHHH
T ss_pred CCCCCcEeCCCCcCe----eeCccchhhhhhhheee
Confidence 346788898654322 24667799999998865
No 51
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=35.11 E-value=12 Score=23.32 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=22.3
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchhHHHHhhh
Q psy8831 16 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTV 51 (88)
Q Consensus 16 ~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~ 51 (88)
....|.-|+-..+-. --|.+.|+||..|+++.
T Consensus 9 ~~~~C~VCgd~a~g~----hyGv~sC~aCk~FFRR~ 40 (93)
T 2han_A 9 SKHLCSICGDRASGK----HYGVYSCEGCKGFFKRT 40 (93)
T ss_dssp -CCBCTTTCSBCCEE----ETTEEECHHHHHHHHHH
T ss_pred CCCCCcEeCCCCcCe----ecCcchhHHHHHHHHhh
Confidence 456899999654332 23557799999998865
No 52
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=34.06 E-value=13 Score=22.89 Aligned_cols=31 Identities=19% Similarity=0.525 Sum_probs=20.0
Q ss_pred CcccccCCCCCCCccccCCCCCCccchhHHHHhhh
Q psy8831 17 GVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTV 51 (88)
Q Consensus 17 ~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~ 51 (88)
...|.-|+-..+-. --|.+.|++|..|+++.
T Consensus 2 ~~~C~VCg~~a~g~----hyGv~sC~~Ck~FFRR~ 32 (90)
T 3g9m_A 2 SHMCLVCSDEASGC----HYGVLTCGSCKVFFKRA 32 (90)
T ss_dssp CCBCTTTCSBCCEE----ETTEEECHHHHHHHHHH
T ss_pred CCcCccCCCcCccc----ccCCccchhHhHHhhhh
Confidence 35688887543221 23556799999988753
No 53
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=33.44 E-value=10 Score=22.81 Aligned_cols=29 Identities=24% Similarity=0.521 Sum_probs=19.6
Q ss_pred CCCCcccccCCCCCCCccccCCCCCCccchhHH
Q psy8831 14 KRSGVSCANCSTTCTTLWRRNNNGEPVCNACGL 46 (88)
Q Consensus 14 ~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl 46 (88)
....-.|.+|+...... ....+.|..||-
T Consensus 25 ~~v~Y~C~~CG~~~e~~----~~d~irCp~CG~ 53 (70)
T 1twf_L 25 ATLKYICAECSSKLSLS----RTDAVRCKDCGH 53 (70)
T ss_dssp CCCCEECSSSCCEECCC----TTSTTCCSSSCC
T ss_pred ceEEEECCCCCCcceeC----CCCCccCCCCCc
Confidence 34556899999886554 223367999986
No 54
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=32.64 E-value=12 Score=26.20 Aligned_cols=29 Identities=21% Similarity=0.498 Sum_probs=20.6
Q ss_pred CcccccCCCCCCCccccCCCCCCccchhHHH
Q psy8831 17 GVSCANCSTTCTTLWRRNNNGEPVCNACGLI 47 (88)
Q Consensus 17 ~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~ 47 (88)
...|-.|+.+.. +|-- .+|...|+.||..
T Consensus 14 ~~~CP~Cg~~d~-~~~~-~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 14 HIPCDNCGSSDG-NSLF-SDGHTFCYVCEKW 42 (255)
T ss_dssp EECCSSSCCSSC-EEEE-TTSCEEETTTCCE
T ss_pred CCcCCCCCCCCC-ceEe-CCCCeecccCCCc
Confidence 567999998764 5533 3456889999853
No 55
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=32.25 E-value=6.5 Score=23.02 Aligned_cols=27 Identities=26% Similarity=0.646 Sum_probs=18.2
Q ss_pred CCCCcccccCCCCCCCccccCCCCCCccchhHHHH
Q psy8831 14 KRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIM 48 (88)
Q Consensus 14 ~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~ 48 (88)
......|.+||...-| +.+|-.||.|-
T Consensus 27 ~p~l~~c~~cGe~~~~--------H~vc~~CG~Y~ 53 (60)
T 3v2d_5 27 PPTLVPCPECKAMKPP--------HTVCPECGYYA 53 (60)
T ss_dssp CCCCEECTTTCCEECT--------TSCCTTTCEET
T ss_pred CCceeECCCCCCeecc--------eEEcCCCCcCC
Confidence 3456788888864422 36899999653
No 56
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=32.20 E-value=9.7 Score=24.69 Aligned_cols=37 Identities=24% Similarity=0.585 Sum_probs=26.2
Q ss_pred CCcccccCCCCCCCcc----ccCCCCC---CccchhHHHHhhhC
Q psy8831 16 SGVSCANCSTTCTTLW----RRNNNGE---PVCNACGLIMNTVD 52 (88)
Q Consensus 16 ~~~~C~nC~tt~Tp~W----Rrg~~G~---~lCNaCgl~~~~~~ 52 (88)
....|..|+-.+.-.| |..+++. +.|-.||-.|+-.+
T Consensus 71 t~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~nn 114 (122)
T 1twf_I 71 SDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQ 114 (122)
T ss_dssp CCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCT
T ss_pred cCCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccCC
Confidence 3578999998775544 5566665 56999998776543
No 57
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=32.19 E-value=14 Score=22.75 Aligned_cols=32 Identities=19% Similarity=0.421 Sum_probs=22.2
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchhHHHHhhh
Q psy8831 16 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTV 51 (88)
Q Consensus 16 ~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~ 51 (88)
....|..|+-..+-. --|.+.|+||..|+++.
T Consensus 4 ~~~~C~VCg~~a~g~----hyGv~sC~aCk~FFRR~ 35 (85)
T 1dsz_B 4 TKHICAICGDRSSGK----HYGVYSCEGCKGFFKRT 35 (85)
T ss_dssp CCEECTTTCCEESSE----ETTEECCHHHHHHHHHH
T ss_pred CCCCCCEeCCCCCce----eeCccchHHHHHHHHHh
Confidence 346789998654332 23556799999998865
No 58
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=30.78 E-value=17 Score=23.67 Aligned_cols=28 Identities=25% Similarity=0.552 Sum_probs=17.9
Q ss_pred CcccccCCCCC--CCccccCCCCCCccchhHH
Q psy8831 17 GVSCANCSTTC--TTLWRRNNNGEPVCNACGL 46 (88)
Q Consensus 17 ~~~C~nC~tt~--Tp~WRrg~~G~~lCNaCgl 46 (88)
-..|..|+... ..+|. .=+-.+|++|--
T Consensus 5 ~~~C~eC~~~~~d~~l~~--~F~~~VC~~Cr~ 34 (111)
T 1d4u_A 5 YVICEECGKEFMDSYLMD--HFDLPTCDDCRD 34 (111)
T ss_dssp CEECTTTCCEESCSSSTT--TTSCCCCTTTCS
T ss_pred CCccccCCChhhHHHHHH--hCCeeechhhcc
Confidence 45799999654 22332 234579999954
No 59
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=30.72 E-value=17 Score=22.56 Aligned_cols=29 Identities=21% Similarity=0.570 Sum_probs=19.1
Q ss_pred ccccCCCCCCCccccCCCCCCccchhHHHHhhh
Q psy8831 19 SCANCSTTCTTLWRRNNNGEPVCNACGLIMNTV 51 (88)
Q Consensus 19 ~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~ 51 (88)
.|.-|+-..+-. --|.+.|+||..|+++.
T Consensus 2 ~C~VCg~~a~g~----hyGv~sC~aCk~FFRR~ 30 (89)
T 1cit_A 2 RCAVCGDNASCQ----HYGVRTCEGCKGFFKRT 30 (89)
T ss_dssp CCSSSCCCCCEE----ETTEEECHHHHHHHHHH
T ss_pred CCeEeCCCCcce----EeCccchhhhhhhceee
Confidence 477787544322 23556799999988754
No 60
>2l1q_A Liver-expressed antimicrobial peptide 2; polypeptide, disulfides, antimicrobial protein, LEAP-2; NMR {Homo sapiens}
Probab=30.57 E-value=14 Score=20.35 Aligned_cols=6 Identities=50% Similarity=1.248 Sum_probs=5.0
Q ss_pred CCcccc
Q psy8831 28 TTLWRR 33 (88)
Q Consensus 28 Tp~WRr 33 (88)
||+||-
T Consensus 2 TP~WR~ 7 (40)
T 2l1q_A 2 TPFWRG 7 (40)
T ss_dssp CCTTSS
T ss_pred cchhhh
Confidence 899984
No 61
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=30.41 E-value=16 Score=22.90 Aligned_cols=32 Identities=16% Similarity=0.409 Sum_probs=21.9
Q ss_pred CcccccCCCCCCCccccCCCCCCccchhHHHHhhhC
Q psy8831 17 GVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVD 52 (88)
Q Consensus 17 ~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~ 52 (88)
...|.-|+-..+-. --|.+.|+||..|+++.-
T Consensus 7 ~~~C~VCg~~a~g~----hyGv~sC~aCk~FFRR~v 38 (94)
T 1a6y_A 7 VLLCKVCGDVASGF----HYGVLACEGCKGFFRRSI 38 (94)
T ss_dssp -CBCTTTSSBCCEE----ETTEEECHHHHHHHHHHH
T ss_pred CCcCcEeCCCCcce----EeCccchhhhhhehheee
Confidence 45799998654332 235567999999988653
No 62
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=30.15 E-value=16 Score=24.11 Aligned_cols=30 Identities=13% Similarity=0.299 Sum_probs=22.4
Q ss_pred CcccccCCCCCCCccccCCCCC-CccchhHH
Q psy8831 17 GVSCANCSTTCTTLWRRNNNGE-PVCNACGL 46 (88)
Q Consensus 17 ~~~C~nC~tt~Tp~WRrg~~G~-~lCNaCgl 46 (88)
...|..||+..+..--.|..+. .+|-.|+.
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTTE
T ss_pred cccCchhCCccccccccCCCCcceECCCCCC
Confidence 4689999998877655555555 57999984
No 63
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=29.13 E-value=11 Score=24.41 Aligned_cols=33 Identities=15% Similarity=0.393 Sum_probs=21.4
Q ss_pred CCCcccccCCCCCCCccccCCCCCCccchhHHHHhhh
Q psy8831 15 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTV 51 (88)
Q Consensus 15 ~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~ 51 (88)
.....|..|+-..+-. --|.+.|+||..|+++.
T Consensus 7 ~~~~~C~VCgd~a~G~----HyGv~sC~aCk~FFRR~ 39 (113)
T 2a66_A 7 DLEELCPVCGDKVSGY----HYGLLTCESCKGFFKRT 39 (113)
T ss_dssp ---CBCTTTCCBEEEE----ETTEEEEHHHHHHHHHH
T ss_pred CCCCCCcEeCCCCcce----eeCcccHHHHHHHHhhh
Confidence 3456799999544322 24556799999998865
No 64
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=29.07 E-value=19 Score=21.67 Aligned_cols=30 Identities=23% Similarity=0.504 Sum_probs=19.8
Q ss_pred ccccCCCCCCCccccCCCCCCccchhHHHHhhhC
Q psy8831 19 SCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVD 52 (88)
Q Consensus 19 ~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~ 52 (88)
.|.-|+-..+-. --|.+-|+||..|+++.-
T Consensus 2 ~C~VCg~~a~g~----hyGv~sC~aCk~FFRR~v 31 (78)
T 3cbb_A 2 LCAICGDRATGK----HYGASSCDGCKGFFRRSV 31 (78)
T ss_dssp BCTTTSSBCCSE----ETTEECCHHHHHHHHHHH
T ss_pred CCeEeCCCCCce----EeCCcchhhhceeeeEEE
Confidence 477787544322 135567999999988653
No 65
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=28.75 E-value=12 Score=24.94 Aligned_cols=33 Identities=18% Similarity=0.487 Sum_probs=0.0
Q ss_pred CcccccCCCCCCCcc----ccCCCCC---CccchhHHHHh
Q psy8831 17 GVSCANCSTTCTTLW----RRNNNGE---PVCNACGLIMN 49 (88)
Q Consensus 17 ~~~C~nC~tt~Tp~W----Rrg~~G~---~lCNaCgl~~~ 49 (88)
...|..|+-.+.-.| |..+++. +.|..||-.|+
T Consensus 92 ~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~ 131 (133)
T 3qt1_I 92 DRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWK 131 (133)
T ss_dssp ----------------------------------------
T ss_pred cCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEeC
Confidence 468999998775544 3445544 56999998775
No 66
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=28.41 E-value=62 Score=19.25 Aligned_cols=34 Identities=29% Similarity=0.620 Sum_probs=23.3
Q ss_pred CCCCCcccccCCCCCCCccccC---CCCCCccchhHH
Q psy8831 13 NKRSGVSCANCSTTCTTLWRRN---NNGEPVCNACGL 46 (88)
Q Consensus 13 ~~~~~~~C~nC~tt~Tp~WRrg---~~G~~lCNaCgl 46 (88)
.......|..|+..-|.+-|+- .=|..+|..|--
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 53 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSR 53 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGC
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhC
Confidence 4456778999998887765542 346677888754
No 67
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=28.12 E-value=71 Score=17.17 Aligned_cols=44 Identities=11% Similarity=0.064 Sum_probs=29.7
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCCCCCcc
Q psy8831 16 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKI 59 (88)
Q Consensus 16 ~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~Rp~~~ 59 (88)
....|.-|...-...-...+=|+.+|..|...|.......|+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr 47 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCK 47 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCC
Confidence 34578888766432112345678899999988877777777654
No 68
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=27.57 E-value=13 Score=21.72 Aligned_cols=14 Identities=21% Similarity=0.710 Sum_probs=12.1
Q ss_pred ccccCCCCCCCccc
Q psy8831 19 SCANCSTTCTTLWR 32 (88)
Q Consensus 19 ~C~nC~tt~Tp~WR 32 (88)
.|.||+..+|+-|.
T Consensus 15 ~CpnC~~~tt~~~~ 28 (59)
T 3lpe_B 15 ICPICHSPTSENWI 28 (59)
T ss_dssp BCTTTCCBEESCEE
T ss_pred CCCCCCCCccCCEe
Confidence 69999988888885
No 69
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=27.46 E-value=21 Score=21.11 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=20.2
Q ss_pred CCCcccccCCCCCCCccccCCCCCCccchhHH
Q psy8831 15 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGL 46 (88)
Q Consensus 15 ~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl 46 (88)
...-.|..|++..... ....+-|..||-
T Consensus 19 ~v~Y~C~~Cg~~~~l~----~~~~iRC~~CG~ 46 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQ----AKEVIRCRECGH 46 (63)
T ss_dssp CCCCBCSSSCCBCCCC----SSSCCCCSSSCC
T ss_pred CeEEECCCCCCeeecC----CCCceECCCCCc
Confidence 4567899999888754 223367999985
No 70
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=27.43 E-value=10 Score=24.24 Aligned_cols=33 Identities=24% Similarity=0.637 Sum_probs=22.4
Q ss_pred CcccccCCCCCCCcc----ccCCCCC---CccchhHHHHh
Q psy8831 17 GVSCANCSTTCTTLW----RRNNNGE---PVCNACGLIMN 49 (88)
Q Consensus 17 ~~~C~nC~tt~Tp~W----Rrg~~G~---~lCNaCgl~~~ 49 (88)
...|..|+-.+.-.| |+.+++. +.|-.||-.|+
T Consensus 72 ~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~ 111 (113)
T 3h0g_I 72 DKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFE 111 (113)
T ss_dssp CSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCC
T ss_pred ccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEe
Confidence 367999998775444 4555555 45988987664
No 71
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=26.50 E-value=12 Score=24.12 Aligned_cols=8 Identities=50% Similarity=1.269 Sum_probs=6.6
Q ss_pred CccchhHH
Q psy8831 39 PVCNACGL 46 (88)
Q Consensus 39 ~lCNaCgl 46 (88)
-+||+||-
T Consensus 76 RvCn~CGk 83 (96)
T 3mhs_E 76 RVCEKCGK 83 (96)
T ss_dssp EEETTTCC
T ss_pred hhhhccCC
Confidence 48999984
No 72
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=25.79 E-value=39 Score=20.56 Aligned_cols=31 Identities=26% Similarity=0.596 Sum_probs=17.3
Q ss_pred CCCCcccccCCCCCCCccccC---CCCCCccchh
Q psy8831 14 KRSGVSCANCSTTCTTLWRRN---NNGEPVCNAC 44 (88)
Q Consensus 14 ~~~~~~C~nC~tt~Tp~WRrg---~~G~~lCNaC 44 (88)
......|..|+..-+.+.|+- .=|..+|..|
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~C 39 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGC 39 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTT
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhH
Confidence 345567777777766655442 2244455555
No 73
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.71 E-value=42 Score=19.95 Aligned_cols=33 Identities=30% Similarity=0.618 Sum_probs=22.4
Q ss_pred CCCCcccccCCCCCCCccccC---CCCCCccchhHH
Q psy8831 14 KRSGVSCANCSTTCTTLWRRN---NNGEPVCNACGL 46 (88)
Q Consensus 14 ~~~~~~C~nC~tt~Tp~WRrg---~~G~~lCNaCgl 46 (88)
......|..|+..-|.+-||- .=|.++|..|--
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 345678888988877665542 346678888843
No 74
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=25.32 E-value=17 Score=24.10 Aligned_cols=7 Identities=29% Similarity=0.733 Sum_probs=4.3
Q ss_pred CccchhH
Q psy8831 39 PVCNACG 45 (88)
Q Consensus 39 ~lCNaCg 45 (88)
.+|+.|.
T Consensus 99 W~C~vC~ 105 (134)
T 1zbd_B 99 WLCKICL 105 (134)
T ss_dssp EEEHHHH
T ss_pred eechhhH
Confidence 4677774
No 75
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=24.79 E-value=11 Score=22.62 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=21.0
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchhHHHHhh
Q psy8831 16 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNT 50 (88)
Q Consensus 16 ~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~ 50 (88)
....|-.|+. ++--....|..+|.+||+.|-.
T Consensus 7 ~iL~CP~ck~---~L~~~~~~~~LiC~~cg~~YPI 38 (70)
T 2js4_A 7 DILVCPVCKG---RLEFQRAQAELVCNADRLAFPV 38 (70)
T ss_dssp CCCBCTTTCC---BEEEETTTTEEEETTTTEEEEE
T ss_pred hheECCCCCC---cCEEeCCCCEEEcCCCCceecC
Confidence 3567888886 4422334566789999986643
No 76
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=24.67 E-value=14 Score=21.97 Aligned_cols=31 Identities=13% Similarity=0.082 Sum_probs=21.0
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchhHHHHh
Q psy8831 16 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMN 49 (88)
Q Consensus 16 ~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~ 49 (88)
....|-.|+. |+--....|..+|.+|++.|-
T Consensus 9 eiL~CP~ck~---~L~~~~~~g~LvC~~c~~~YP 39 (67)
T 2jny_A 9 EVLACPKDKG---PLRYLESEQLLVNERLNLAYR 39 (67)
T ss_dssp CCCBCTTTCC---BCEEETTTTEEEETTTTEEEE
T ss_pred HHhCCCCCCC---cCeEeCCCCEEEcCCCCcccc
Confidence 3567888876 553333456688999998664
No 77
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.23 E-value=97 Score=17.00 Aligned_cols=47 Identities=11% Similarity=0.108 Sum_probs=31.2
Q ss_pred CCCCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCCCCCcc
Q psy8831 13 NKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKI 59 (88)
Q Consensus 13 ~~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~Rp~~~ 59 (88)
.......|.-|...-.--..-.+=|+.+|-.|...|.......|+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr 57 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCN 57 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTC
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcC
Confidence 34456778888765432112235688999999998877777777654
No 78
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=24.18 E-value=48 Score=19.68 Aligned_cols=33 Identities=24% Similarity=0.619 Sum_probs=22.6
Q ss_pred CCCCcccccCCCCCCCccccC---CCCCCccchhHH
Q psy8831 14 KRSGVSCANCSTTCTTLWRRN---NNGEPVCNACGL 46 (88)
Q Consensus 14 ~~~~~~C~nC~tt~Tp~WRrg---~~G~~lCNaCgl 46 (88)
......|..|+..-+.+-|+- .=|..+|+.|--
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 345668899988877665542 346678888865
No 79
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=23.72 E-value=43 Score=21.66 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=28.5
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCC
Q psy8831 16 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDI 53 (88)
Q Consensus 16 ~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~ 53 (88)
.-..|..|+-..-...+..-.+..+|-.|--.+-+..+
T Consensus 55 syG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E~~~k 92 (108)
T 2kgo_A 55 SLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 92 (108)
T ss_dssp CCSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHHHHCC
T ss_pred cCceecccCCcccHHHHhcCCCccccHHHHHHHHHHHH
Confidence 35789999988877766666677899999876555443
No 80
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=23.05 E-value=41 Score=21.93 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=12.5
Q ss_pred CCCCcccccCCCCCCCcccc
Q psy8831 14 KRSGVSCANCSTTCTTLWRR 33 (88)
Q Consensus 14 ~~~~~~C~nC~tt~Tp~WRr 33 (88)
......|..|+..-|...|+
T Consensus 16 d~~~~~C~~C~~~Fs~~~Rk 35 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARK 35 (120)
T ss_dssp ----CCCTTTCCCCSSGGGC
T ss_pred ccccCcccCcCCcccccccc
Confidence 34556899999888876555
No 81
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=22.31 E-value=14 Score=21.93 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=19.5
Q ss_pred CcccccCCCCCCCccccCCCCCCccchhHHHHh
Q psy8831 17 GVSCANCSTTCTTLWRRNNNGEPVCNACGLIMN 49 (88)
Q Consensus 17 ~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~ 49 (88)
...|-.|+. ++--....|..+|.+||+.|-
T Consensus 8 iL~CP~ck~---~L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2hf1_A 8 ILVCPLCKG---PLVFDKSKDELICKGDRLAFP 37 (68)
T ss_dssp ECBCTTTCC---BCEEETTTTEEEETTTTEEEE
T ss_pred heECCCCCC---cCeEeCCCCEEEcCCCCcEec
Confidence 356777874 543233456678999998664
No 82
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=21.38 E-value=31 Score=18.80 Aligned_cols=10 Identities=20% Similarity=0.385 Sum_probs=7.0
Q ss_pred CCCCccchhH
Q psy8831 36 NGEPVCNACG 45 (88)
Q Consensus 36 ~G~~lCNaCg 45 (88)
+|.++|..|.
T Consensus 50 ~g~~yC~~~y 59 (66)
T 1nyp_A 50 KGLAYCETHY 59 (66)
T ss_dssp TTEEECHHHH
T ss_pred CCcEECHHHH
Confidence 5667788874
No 83
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=21.19 E-value=16 Score=21.73 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=20.6
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchhHHHHh
Q psy8831 16 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMN 49 (88)
Q Consensus 16 ~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~ 49 (88)
....|-.|+. ++--....|..+|.+||+.|-
T Consensus 7 ~iL~CP~ck~---~L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2jr6_A 7 DILVCPVTKG---RLEYHQDKQELWSRQAKLAYP 37 (68)
T ss_dssp CCCBCSSSCC---BCEEETTTTEEEETTTTEEEE
T ss_pred hheECCCCCC---cCeEeCCCCEEEcCCCCcEec
Confidence 3567888884 543233456678999998664
No 84
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.19 E-value=51 Score=18.05 Aligned_cols=10 Identities=20% Similarity=0.404 Sum_probs=7.2
Q ss_pred CCCCccchhH
Q psy8831 36 NGEPVCNACG 45 (88)
Q Consensus 36 ~G~~lCNaCg 45 (88)
+|.++|..|.
T Consensus 50 ~~~~yC~~cy 59 (70)
T 2d8z_A 50 DDFAYCLNCF 59 (70)
T ss_dssp SSSEECHHHH
T ss_pred CCeEECHHHH
Confidence 5667788884
No 85
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.93 E-value=45 Score=19.40 Aligned_cols=14 Identities=14% Similarity=0.347 Sum_probs=7.7
Q ss_pred CCcccccCCCCCCC
Q psy8831 16 SGVSCANCSTTCTT 29 (88)
Q Consensus 16 ~~~~C~nC~tt~Tp 29 (88)
....|..|+.....
T Consensus 24 ~~~~C~~C~~~I~~ 37 (89)
T 1x64_A 24 RMPLCDKCGSGIVG 37 (89)
T ss_dssp SCCBCTTTCCBCCS
T ss_pred cCCCcccCCCEecc
Confidence 34556666655443
Done!