RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8831
         (88 letters)



>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1
          {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 66

 Score = 56.1 bits (135), Expect = 5e-13
 Identities = 24/43 (55%), Positives = 30/43 (69%)

Query: 14 KRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
          KR+G  C+NC T+ TTLWRR+  G+PVCNACGL      +N P
Sbjct: 1  KRAGTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVNRP 43


>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor
          GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 39

 Score = 50.9 bits (122), Expect = 3e-11
 Identities = 16/30 (53%), Positives = 18/30 (60%)

Query: 17 GVSCANCSTTCTTLWRRNNNGEPVCNACGL 46
             C NC  T T LWRR+  G  +CNACGL
Sbjct: 2  ARECVNCGATATPLWRRDRTGHYLCNACGL 31


>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor
          GATA-1 {Emericella nidulans [TaxId: 162425]}
          Length = 42

 Score = 50.2 bits (120), Expect = 5e-11
 Identities = 19/38 (50%), Positives = 24/38 (63%)

Query: 19 SCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
          +C NC T  T LWRRN  G+P+CNACGL +    +  P
Sbjct: 2  TCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRP 39


>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB,
          N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 58

 Score = 26.3 bits (58), Expect = 0.19
 Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%)

Query: 18 VSCANCSTTCTTLWRRNNNGEPVCNACGLIMN 49
          V+C N       L      G+ +C  CGL++ 
Sbjct: 12 VTCPNHP--DAILVEDYRAGDMICPECGLVVG 41


>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB,
          N-terminal domain {Archaeon Pyrococcus furiosus [TaxId:
          2261]}
          Length = 50

 Score = 24.7 bits (54), Expect = 0.52
 Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 2/30 (6%)

Query: 20 CANCSTTCTTLWRRNNNGEPVCNACGLIMN 49
          C  C      L      GE VC  CG ++ 
Sbjct: 8  CPACE--SAELIYDPERGEIVCAKCGYVIE 35


>d1e2wa1 b.2.6.1 (A:1-168,A:233-251) Cytochrome f, large domain
          {Chlamydomonas reinhardtii [TaxId: 3055]}
          Length = 187

 Score = 25.8 bits (57), Expect = 0.63
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 33 RNNNGEPVCNACGLIMNTVDINAPEKIMP 61
          R  NG  VC  C L    V+I  P+ ++P
Sbjct: 13 REANGRIVCANCHLAQKAVEIEVPQAVLP 41


>d1ci3m1 b.2.6.1 (M:1-169,M:232-249) Cytochrome f, large domain
          {Phormidium laminosum [TaxId: 32059]}
          Length = 187

 Score = 25.8 bits (57), Expect = 0.66
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 33 RNNNGEPVCNACGLIMNTVDINAPEKIMP 61
          R   G  VC  C L     +I  P+ ++P
Sbjct: 13 REATGRIVCANCHLAAKPAEIEVPQAVLP 41


>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein
          19 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 88

 Score = 23.5 bits (50), Expect = 2.8
 Identities = 11/45 (24%), Positives = 16/45 (35%)

Query: 18 VSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKIMPP 62
            C  C +    + R  N  + VC  C  I+     +   K  PP
Sbjct: 34 AFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGSSDNASKWSPP 78


>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus
           casseliflavus [TaxId: 37734]}
          Length = 252

 Score = 23.6 bits (50), Expect = 4.0
 Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 9/53 (16%)

Query: 11  TGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKIMPPI 63
           T  +      +N S T      +    + + +   +         P  ++P +
Sbjct: 171 TDGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNI---------PSSMLPEV 214


>d1vz6a_ d.154.1.2 (A:) Glutamate N-acetyltransferase 2 (ornithine
           acetyltransferase) {Streptomyces clavuligerus [TaxId:
           1901]}
          Length = 383

 Score = 23.5 bits (50), Expect = 4.8
 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 19  SCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKI 59
           +  N     T +   + N   V  A G   +  DI+  E++
Sbjct: 278 TVVNSPLVKTAVHGCDPNWGRVAMAIGKCSDDTDID-QERV 317


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.407 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 323,768
Number of extensions: 12582
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 19
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)