Query psy8832
Match_columns 144
No_of_seqs 151 out of 802
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 20:19:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8832.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8832hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hc9_A Trans-acting T-cell-spe 100.0 1.2E-38 4.1E-43 228.9 6.2 102 36-141 4-105 (115)
2 3dfx_A Trans-acting T-cell-spe 99.8 3.9E-21 1.3E-25 124.0 4.6 52 90-141 2-53 (63)
3 2vut_I AREA, nitrogen regulato 99.8 3.4E-21 1.2E-25 115.6 3.4 42 96-137 2-43 (43)
4 4gat_A Nitrogen regulatory pro 99.8 4.5E-20 1.5E-24 120.1 3.6 48 93-140 7-54 (66)
5 1gnf_A Transcription factor GA 99.8 8.3E-20 2.9E-24 111.0 4.2 43 94-136 3-45 (46)
6 1gnf_A Transcription factor GA 99.7 4.4E-19 1.5E-23 107.8 2.8 44 36-79 3-46 (46)
7 2kae_A GATA-type transcription 99.7 5.6E-19 1.9E-23 116.4 2.4 47 93-140 6-54 (71)
8 2vut_I AREA, nitrogen regulato 99.7 1.3E-18 4.4E-23 104.4 1.9 41 38-78 2-42 (43)
9 3dfx_A Trans-acting T-cell-spe 99.7 9E-18 3.1E-22 108.3 2.2 47 35-81 5-51 (63)
10 4gat_A Nitrogen regulatory pro 99.7 9.2E-18 3.2E-22 109.2 2.1 48 34-81 6-53 (66)
11 2kae_A GATA-type transcription 99.6 9.3E-17 3.2E-21 105.8 0.9 48 34-82 5-54 (71)
12 4hc9_A Trans-acting T-cell-spe 99.6 8.1E-16 2.8E-20 110.0 3.7 48 94-141 4-51 (115)
13 1dl6_A Transcription factor II 90.4 0.29 9.9E-06 30.1 3.5 35 33-69 7-41 (58)
14 3h0g_I DNA-directed RNA polyme 84.5 1.2 4.1E-05 30.7 4.2 90 36-127 3-111 (113)
15 1pft_A TFIIB, PFTFIIBN; N-term 84.4 0.79 2.7E-05 26.8 2.8 32 37-70 5-36 (50)
16 1k81_A EIF-2-beta, probable tr 84.1 0.19 6.4E-06 28.1 -0.1 30 39-68 2-31 (36)
17 1wfk_A Zinc finger, FYVE domai 81.2 1.9 6.5E-05 28.4 4.0 32 34-65 6-40 (88)
18 1k81_A EIF-2-beta, probable tr 80.9 0.3 1E-05 27.3 -0.1 28 97-124 2-29 (36)
19 2d74_B Translation initiation 79.7 0.68 2.3E-05 33.8 1.5 38 96-140 105-142 (148)
20 3k7a_M Transcription initiatio 77.3 1.5 5E-05 35.6 2.9 35 35-69 19-53 (345)
21 3k1f_M Transcription initiatio 76.0 1.6 5.5E-05 33.0 2.6 34 35-68 19-52 (197)
22 3dwd_A ADP-ribosylation factor 73.7 1.9 6.6E-05 31.4 2.4 45 92-137 35-83 (147)
23 2d74_B Translation initiation 73.0 1.7 5.7E-05 31.7 2.0 30 38-67 105-134 (148)
24 1nee_A EIF-2-beta, probable tr 72.9 1.7 5.9E-05 31.2 2.0 30 38-67 103-132 (138)
25 3cw2_K Translation initiation 72.3 1.7 5.7E-05 31.3 1.8 30 38-67 104-133 (139)
26 2owa_A Arfgap-like finger doma 71.9 2.1 7.1E-05 30.8 2.3 44 93-137 34-81 (138)
27 3v2d_5 50S ribosomal protein L 69.0 1.4 4.8E-05 27.3 0.7 26 36-69 29-54 (60)
28 2zjr_Z 50S ribosomal protein L 68.8 2.6 9E-05 26.0 1.9 27 34-68 27-53 (60)
29 3cw2_K Translation initiation 68.7 2.3 7.8E-05 30.6 1.9 29 96-124 104-132 (139)
30 2crr_A Stromal membrane-associ 66.4 4.1 0.00014 29.2 2.9 43 94-137 28-74 (141)
31 2crw_A ARF GAP 3, ADP-ribosyla 66.1 4.2 0.00014 29.5 2.9 44 93-137 27-74 (149)
32 2fiy_A Protein FDHE homolog; F 65.4 1.5 5.2E-05 35.4 0.4 71 36-129 181-266 (309)
33 4bbr_M Transcription initiatio 65.0 2.3 7.9E-05 34.6 1.4 31 37-67 21-51 (345)
34 3qt1_I DNA-directed RNA polyme 63.9 3.3 0.00011 29.5 1.9 94 32-127 19-131 (133)
35 1twf_I B12.6, DNA-directed RNA 63.9 6 0.0002 27.4 3.3 95 36-130 3-114 (122)
36 2g2k_A EIF-5, eukaryotic trans 62.9 1.7 5.7E-05 32.4 0.2 28 97-124 98-127 (170)
37 1z2q_A LM5-1; membrane protein 62.3 9.5 0.00033 24.5 3.8 33 33-65 17-52 (84)
38 3k7a_M Transcription initiatio 59.6 3.4 0.00012 33.4 1.5 18 95-112 42-66 (345)
39 2owa_A Arfgap-like finger doma 59.5 3.2 0.00011 29.8 1.2 38 36-74 35-72 (138)
40 1nee_A EIF-2-beta, probable tr 59.1 2.6 8.9E-05 30.3 0.6 28 97-124 104-131 (138)
41 2iqj_A Stromal membrane-associ 58.9 5.7 0.00019 28.2 2.4 44 93-137 25-72 (134)
42 2iqj_A Stromal membrane-associ 54.7 3.5 0.00012 29.3 0.7 38 36-74 26-63 (134)
43 3sub_A ADP-ribosylation factor 52.6 8 0.00028 28.5 2.4 43 94-137 21-67 (163)
44 2e9h_A EIF-5, eukaryotic trans 52.0 2.1 7.3E-05 31.4 -0.8 36 96-138 104-141 (157)
45 3dwd_A ADP-ribosylation factor 51.3 6.9 0.00024 28.4 1.8 39 35-74 36-74 (147)
46 2olm_A Nucleoporin-like protei 51.1 5.5 0.00019 28.5 1.3 37 36-73 24-60 (140)
47 2crr_A Stromal membrane-associ 50.9 6.2 0.00021 28.3 1.5 37 36-73 28-64 (141)
48 2p57_A GTPase-activating prote 50.9 3.9 0.00013 29.6 0.4 38 36-74 36-73 (144)
49 2g2k_A EIF-5, eukaryotic trans 49.2 3.6 0.00012 30.6 -0.0 33 38-70 97-131 (170)
50 2olm_A Nucleoporin-like protei 47.7 7.2 0.00025 27.9 1.4 37 94-131 24-60 (140)
51 2p57_A GTPase-activating prote 47.0 8.1 0.00028 27.9 1.6 44 93-137 35-82 (144)
52 3mpx_A FYVE, rhogef and PH dom 46.9 4.1 0.00014 33.3 0.0 28 97-124 401-428 (434)
53 2b0o_E UPLC1; arfgap, structur 45.4 9 0.00031 29.6 1.8 36 36-72 41-76 (301)
54 2ds5_A CLPX, ATP-dependent CLP 44.3 8.3 0.00028 23.0 1.1 29 37-66 11-41 (51)
55 1ovx_A ATP-dependent CLP prote 43.8 7.8 0.00027 24.5 1.0 28 38-66 19-48 (67)
56 2zet_C Melanophilin; complex, 42.9 11 0.00036 27.4 1.7 50 36-124 67-116 (153)
57 4hn5_A Glucocorticoid receptor 42.8 3.6 0.00012 28.7 -0.8 35 32-70 24-58 (117)
58 2e9h_A EIF-5, eukaryotic trans 42.5 8.7 0.0003 28.1 1.2 33 38-70 104-138 (157)
59 4bbr_M Transcription initiatio 42.1 4.8 0.00016 32.7 -0.3 19 94-112 41-66 (345)
60 1x4u_A Zinc finger, FYVE domai 41.5 30 0.001 22.0 3.6 34 33-66 10-46 (84)
61 3o47_A ADP-ribosylation factor 40.8 9.6 0.00033 30.1 1.3 39 93-132 35-73 (329)
62 1zbd_B Rabphilin-3A; G protein 40.8 24 0.00081 24.9 3.3 53 36-124 54-106 (134)
63 1y02_A CARP2, FYVE-ring finger 40.5 13 0.00045 25.8 1.8 33 33-65 15-50 (120)
64 2crw_A ARF GAP 3, ADP-ribosyla 38.5 12 0.00042 27.0 1.5 38 36-74 28-65 (149)
65 3t7l_A Zinc finger FYVE domain 38.3 21 0.00073 23.1 2.5 33 97-130 46-78 (90)
66 3sub_A ADP-ribosylation factor 37.9 10 0.00036 27.9 1.0 38 36-74 21-58 (163)
67 1vq8_Z 50S ribosomal protein L 36.5 9.5 0.00032 24.9 0.5 31 36-69 26-56 (83)
68 3j20_Y 30S ribosomal protein S 36.4 16 0.00054 21.4 1.5 31 33-66 15-45 (50)
69 2b0o_E UPLC1; arfgap, structur 35.6 26 0.00089 26.9 3.1 37 93-130 40-76 (301)
70 1qyp_A RNA polymerase II; tran 35.2 12 0.00041 22.1 0.8 34 37-70 15-55 (57)
71 1tfi_A Transcriptional elongat 34.6 19 0.00064 21.1 1.6 35 35-69 7-48 (50)
72 2js4_A UPF0434 protein BB2007; 34.4 23 0.00078 22.3 2.1 33 36-71 7-39 (70)
73 1nui_A DNA primase/helicase; z 33.0 18 0.00063 27.4 1.8 29 37-67 14-42 (255)
74 2hf1_A Tetraacyldisaccharide-1 32.6 21 0.00072 22.3 1.7 32 37-71 8-39 (68)
75 2jr6_A UPF0434 protein NMA0874 32.5 25 0.00085 21.9 2.0 33 36-71 7-39 (68)
76 2yw8_A RUN and FYVE domain-con 31.8 30 0.001 21.9 2.4 34 33-66 15-51 (82)
77 1ynw_B Retinoic acid receptor 31.7 35 0.0012 22.7 2.8 31 96-130 4-34 (99)
78 2jny_A Uncharacterized BCR; st 31.6 26 0.00089 21.9 2.0 33 36-71 9-41 (67)
79 1wig_A KIAA1808 protein; LIM d 31.2 20 0.00067 21.8 1.4 12 56-67 51-62 (73)
80 2pk7_A Uncharacterized protein 30.8 21 0.00072 22.4 1.5 32 37-71 8-39 (69)
81 1dvp_A HRS, hepatocyte growth 30.7 49 0.0017 24.6 3.8 29 97-125 187-216 (220)
82 3o47_A ADP-ribosylation factor 30.6 9.1 0.00031 30.3 -0.4 38 35-73 35-72 (329)
83 3zyq_A Hepatocyte growth facto 30.4 39 0.0013 25.5 3.2 13 38-50 165-177 (226)
84 2han_B Ecdysone receptor; tran 30.3 27 0.00092 24.1 2.1 32 94-129 7-38 (119)
85 1twf_L ABC10-alpha, DNA-direct 30.2 19 0.00064 22.7 1.1 29 34-66 25-53 (70)
86 2ebl_A COUP transcription fact 29.9 33 0.0011 22.4 2.4 33 94-130 6-38 (89)
87 3lju_X ARF-GAP with dual PH do 28.4 19 0.00066 29.4 1.2 33 36-69 33-65 (386)
88 3jue_A Arfgap with coiled-coil 26.9 22 0.00077 28.6 1.4 34 36-70 44-77 (368)
89 1d4u_A Nucleotide excision rep 26.3 18 0.00063 24.9 0.6 31 37-67 5-35 (111)
90 3jyw_9 60S ribosomal protein L 24.9 39 0.0013 21.5 1.9 30 36-68 25-54 (72)
91 1lo1_A Steroid hormone recepto 24.2 41 0.0014 22.4 2.0 31 95-129 4-34 (98)
92 3gox_A Restriction endonucleas 23.8 23 0.00077 26.9 0.7 87 34-124 72-176 (200)
93 3lpe_B DNA-directed RNA polyme 23.1 21 0.00073 21.8 0.4 14 39-52 15-28 (59)
94 1hcq_A Protein (estrogen recep 23.1 43 0.0015 21.6 1.9 31 95-129 4-34 (84)
95 1dsz_A RAR-alpha, retinoic aci 22.9 35 0.0012 22.1 1.5 31 95-129 4-34 (86)
96 1joc_A EEA1, early endosomal a 22.9 40 0.0014 23.2 1.9 33 34-66 66-101 (125)
97 2kn9_A Rubredoxin; metalloprot 22.3 38 0.0013 22.0 1.5 12 35-46 25-36 (81)
98 2nll_B Protein (thyroid hormon 22.3 41 0.0014 22.6 1.8 30 97-130 3-32 (103)
99 2yrc_A Protein transport prote 22.2 42 0.0014 20.2 1.7 35 33-67 5-42 (59)
100 2han_A Protein ultraspiracle; 22.2 41 0.0014 22.1 1.7 31 95-129 10-40 (93)
101 2a20_A Regulating synaptic mem 21.9 51 0.0017 20.3 1.9 25 35-64 7-31 (62)
102 3hcj_A MSRB, peptide methionin 21.8 25 0.00084 25.7 0.6 51 92-142 96-149 (154)
103 1dsz_B RXR-alpha, retinoic aci 21.6 36 0.0012 22.0 1.3 31 95-129 5-35 (85)
104 1vfy_A Phosphatidylinositol-3- 21.5 48 0.0016 20.4 1.9 32 96-127 36-68 (73)
105 1kb2_A Vitamin D3 receptor; VD 21.3 41 0.0014 22.8 1.6 31 95-129 6-36 (110)
106 1r4i_A Androgen receptor; AR, 20.6 45 0.0015 22.5 1.7 32 95-130 7-38 (105)
107 1w4r_A Thymidine kinase; type 20.5 71 0.0024 23.7 3.0 50 4-55 120-169 (195)
108 2a66_A Orphan nuclear receptor 20.2 40 0.0014 23.0 1.4 32 94-129 8-39 (113)
109 3jue_A Arfgap with coiled-coil 20.1 58 0.002 26.1 2.6 37 93-130 43-79 (368)
110 1dcq_A PYK2-associated protein 20.0 62 0.0021 24.4 2.6 37 94-131 16-52 (278)
No 1
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=100.00 E-value=1.2e-38 Score=228.91 Aligned_cols=102 Identities=62% Similarity=1.192 Sum_probs=91.1
Q ss_pred CCcccccCCCCCCCeeeeCCCCCcccccccccccccCCCCCCccccchhhhhhcCCCCCCcccccCCcccccccccCCCC
Q psy8832 36 DIKECVNCAANSTPLWRRDGTGHHLCNACGLYNRINGVNRPPVRTNQKKALQQTGNKRSGVSCANCSTTCTTLWRRNNNG 115 (144)
Q Consensus 36 ~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~~g~~RP~~k~kkkka~~~s~~k~~~~~C~nC~t~~t~~WR~~~~g 115 (144)
..++|+|||+++||+||+|++|++||||||||+++++.++|+.+++++. ......+..|+||++++||+||++++|
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~----~~~~~~~~~C~~C~t~~tp~WRr~~~g 79 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRL----SAARRAGTSCANCQTTTTTLWRRNANG 79 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCC----CCCCCTTCCCTTTCCSCCSSCEECTTS
T ss_pred CCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccc----cccccccccCCCcCCCCcceeEECCCC
Confidence 4679999999999999999999999999999999999999987665432 344567789999999999999999999
Q ss_pred CcccchhHHHHHhhCCCCcccccccc
Q psy8832 116 EPVCNACGLYFKLHNVFTILFYNITK 141 (144)
Q Consensus 116 ~~lCnaCglyy~~~~~~Rp~~l~~~~ 141 (144)
++|||||||||++|+++||++|+++.
T Consensus 80 ~~lCNaCgl~~~~~~~~rp~~~~~~~ 105 (115)
T 4hc9_A 80 DPVCNACGLYYKLHNINRPLTMKKEG 105 (115)
T ss_dssp CEECHHHHHHHHHHSSCCCGGGCCSS
T ss_pred CCcchHHHHHHHHhCCCCCccccccc
Confidence 99999999999999999999998653
No 2
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.83 E-value=3.9e-21 Score=124.04 Aligned_cols=52 Identities=62% Similarity=1.137 Sum_probs=47.8
Q ss_pred CCCCCCcccccCCcccccccccCCCCCcccchhHHHHHhhCCCCcccccccc
Q psy8832 90 GNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHNVFTILFYNITK 141 (144)
Q Consensus 90 ~~k~~~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~~~~Rp~~l~~~~ 141 (144)
.+++....|+||++++||+||++++|..|||||||||++|++.||++|+++.
T Consensus 2 ~~~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~~RP~~~~~~~ 53 (63)
T 3dfx_A 2 AARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEG 53 (63)
T ss_dssp CCCCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSSCCCGGGCCSS
T ss_pred CCCCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCCCCCcCcCCCc
Confidence 3556778999999999999999999999999999999999999999998764
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.82 E-value=3.4e-21 Score=115.65 Aligned_cols=42 Identities=55% Similarity=1.127 Sum_probs=40.6
Q ss_pred cccccCCcccccccccCCCCCcccchhHHHHHhhCCCCcccc
Q psy8832 96 VSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHNVFTILFY 137 (144)
Q Consensus 96 ~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~~~~Rp~~l 137 (144)
..|+||++++||+||++++|..|||||||||++||+.||++|
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~RP~~l 43 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSL 43 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSSCCCCCC
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCCCCCCCC
Confidence 479999999999999999999999999999999999999987
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.79 E-value=4.5e-20 Score=120.14 Aligned_cols=48 Identities=48% Similarity=0.982 Sum_probs=45.0
Q ss_pred CCCcccccCCcccccccccCCCCCcccchhHHHHHhhCCCCccccccc
Q psy8832 93 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHNVFTILFYNIT 140 (144)
Q Consensus 93 ~~~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~~~~Rp~~l~~~ 140 (144)
.....|+||++++||+||++++|.+|||||||||++|++.||++|+++
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~~RP~~~k~~ 54 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSLKTD 54 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCSCCCGGGCCS
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCCCCchhhccc
Confidence 456799999999999999999999999999999999999999999865
No 5
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.78 E-value=8.3e-20 Score=111.02 Aligned_cols=43 Identities=44% Similarity=0.940 Sum_probs=40.5
Q ss_pred CCcccccCCcccccccccCCCCCcccchhHHHHHhhCCCCccc
Q psy8832 94 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHNVFTILF 136 (144)
Q Consensus 94 ~~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~~~~Rp~~ 136 (144)
....|+||++++||+||++++|..|||||||||++|+++||++
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~RP~~ 45 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLI 45 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSCCCCC
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCCCCCC
Confidence 3568999999999999999999999999999999999999985
No 6
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.74 E-value=4.4e-19 Score=107.82 Aligned_cols=44 Identities=68% Similarity=1.405 Sum_probs=41.1
Q ss_pred CCcccccCCCCCCCeeeeCCCCCcccccccccccccCCCCCCcc
Q psy8832 36 DIKECVNCAANSTPLWRRDGTGHHLCNACGLYNRINGVNRPPVR 79 (144)
Q Consensus 36 ~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~~g~~RP~~k 79 (144)
..+.|++|++++||+||++++|.+||||||||+++++.+||+.+
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~RP~~~ 46 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLIR 46 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSCCCCCC
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCCCCCCC
Confidence 46789999999999999999999999999999999999999753
No 7
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.73 E-value=5.6e-19 Score=116.40 Aligned_cols=47 Identities=32% Similarity=0.547 Sum_probs=41.4
Q ss_pred CCCcccccCCccccccccc--CCCCCcccchhHHHHHhhCCCCccccccc
Q psy8832 93 RSGVSCANCSTTCTTLWRR--NNNGEPVCNACGLYFKLHNVFTILFYNIT 140 (144)
Q Consensus 93 ~~~~~C~nC~t~~t~~WR~--~~~g~~lCnaCglyy~~~~~~Rp~~l~~~ 140 (144)
.....|+||++++||+||+ +++| +|||||||||++|++.||++|+.+
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~~RP~~~~~~ 54 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKTRPVTAVNK 54 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHSCCCTHHHHH
T ss_pred CCCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCCCCCcccchh
Confidence 3557999999999999999 6667 999999999999999999999854
No 8
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.72 E-value=1.3e-18 Score=104.38 Aligned_cols=41 Identities=51% Similarity=1.150 Sum_probs=39.2
Q ss_pred cccccCCCCCCCeeeeCCCCCcccccccccccccCCCCCCc
Q psy8832 38 KECVNCAANSTPLWRRDGTGHHLCNACGLYNRINGVNRPPV 78 (144)
Q Consensus 38 ~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~~g~~RP~~ 78 (144)
+.|++|++++||+||++++|.+||||||||+++++..||+.
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~RP~~ 42 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLS 42 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSSCCCCC
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCCCCCCC
Confidence 57999999999999999999999999999999999999975
No 9
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.68 E-value=9e-18 Score=108.25 Aligned_cols=47 Identities=40% Similarity=0.947 Sum_probs=42.7
Q ss_pred CCCcccccCCCCCCCeeeeCCCCCcccccccccccccCCCCCCcccc
Q psy8832 35 MDIKECVNCAANSTPLWRRDGTGHHLCNACGLYNRINGVNRPPVRTN 81 (144)
Q Consensus 35 ~~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~~g~~RP~~k~k 81 (144)
.....|++|++++||+||+|++|.+||||||||+++++..||+...+
T Consensus 5 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~~RP~~~~~ 51 (63)
T 3dfx_A 5 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKK 51 (63)
T ss_dssp CTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSSCCCGGGCC
T ss_pred CCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCCCCCcCcCC
Confidence 45678999999999999999999999999999999999999987543
No 10
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.67 E-value=9.2e-18 Score=109.20 Aligned_cols=48 Identities=44% Similarity=0.944 Sum_probs=43.6
Q ss_pred CCCCcccccCCCCCCCeeeeCCCCCcccccccccccccCCCCCCcccc
Q psy8832 34 NMDIKECVNCAANSTPLWRRDGTGHHLCNACGLYNRINGVNRPPVRTN 81 (144)
Q Consensus 34 ~~~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~~g~~RP~~k~k 81 (144)
....+.|++|++++||+||+|++|.+||||||||+++++..||..+..
T Consensus 6 ~~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~~RP~~~k~ 53 (66)
T 4gat_A 6 QNGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSLKT 53 (66)
T ss_dssp SSSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCSCCCGGGCC
T ss_pred CCCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCCCCchhhcc
Confidence 355789999999999999999999999999999999999999987643
No 11
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.60 E-value=9.3e-17 Score=105.77 Aligned_cols=48 Identities=35% Similarity=0.675 Sum_probs=40.4
Q ss_pred CCCCcccccCCCCCCCeeee--CCCCCcccccccccccccCCCCCCccccc
Q psy8832 34 NMDIKECVNCAANSTPLWRR--DGTGHHLCNACGLYNRINGVNRPPVRTNQ 82 (144)
Q Consensus 34 ~~~~~~C~~C~t~~tp~wrr--~~~g~~lCnaCgly~r~~g~~RP~~k~kk 82 (144)
......|+||+|++||+||+ ++.| +||||||||+++++..||+....+
T Consensus 5 ~~~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~~RP~~~~~~ 54 (71)
T 2kae_A 5 NKKSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKTRPVTAVNK 54 (71)
T ss_dssp ---CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHSCCCTHHHHH
T ss_pred CCCCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCCCCCcccchh
Confidence 44668999999999999999 6677 899999999999999999875543
No 12
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.57 E-value=8.1e-16 Score=110.03 Aligned_cols=48 Identities=42% Similarity=0.854 Sum_probs=42.8
Q ss_pred CCcccccCCcccccccccCCCCCcccchhHHHHHhhCCCCcccccccc
Q psy8832 94 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHNVFTILFYNITK 141 (144)
Q Consensus 94 ~~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~~~~Rp~~l~~~~ 141 (144)
++..|+||++++||+||++++|.+|||||||||++|+++||+..++++
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR 51 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRR 51 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCC
T ss_pred CCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhccccccccccccc
Confidence 567999999999999999999999999999999999999998766554
No 13
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=90.40 E-value=0.29 Score=30.07 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=25.0
Q ss_pred CCCCCcccccCCCCCCCeeeeCCCCCccccccccccc
Q psy8832 33 LNMDIKECVNCAANSTPLWRRDGTGHHLCNACGLYNR 69 (144)
Q Consensus 33 ~~~~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r 69 (144)
.......|.+|+.+. +-.....|.++|..||+-..
T Consensus 7 ~ll~~~~Cp~C~~~~--lv~D~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 7 DALPRVTCPNHPDAI--LVEDYRAGDMICPECGLVVG 41 (58)
T ss_dssp CCCSCCSBTTBSSSC--CEECSSSCCEECTTTCCEEC
T ss_pred hccccccCcCCCCCc--eeEeCCCCeEEeCCCCCEEe
Confidence 344555799999754 44445678999999999544
No 14
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=84.51 E-value=1.2 Score=30.70 Aligned_cols=90 Identities=19% Similarity=0.417 Sum_probs=47.5
Q ss_pred CCcccccCCCCCCCeeeeCC-CC--CcccccccccccccCC----CCCCccccchhh-h----hhcCCCCCCcccccCCc
Q psy8832 36 DIKECVNCAANSTPLWRRDG-TG--HHLCNACGLYNRINGV----NRPPVRTNQKKA-L----QQTGNKRSGVSCANCST 103 (144)
Q Consensus 36 ~~~~C~~C~t~~tp~wrr~~-~g--~~lCnaCgly~r~~g~----~RP~~k~kkkka-~----~~s~~k~~~~~C~nC~t 103 (144)
...-|.+||.--.|. .+. ++ .+.|..|+.-+..... +....+.+.... + .-....+....|.+|+.
T Consensus 3 ~m~FCp~Cgn~L~~~--~~~~~~~~~~~C~~C~y~~~~~~~~v~~~~~~~~~~e~~~v~~~~~~~~tlp~~~~~Cp~C~~ 80 (113)
T 3h0g_I 3 NFQYCIECNNMLYPR--EDKVDRVLRLACRNCDYSEIAATSKVYRHELQSSNVENTTVSHDASTDPTLPRSDKECPRCHQ 80 (113)
T ss_dssp CCCCCSSSCCCCEEC--CCTTTCCCCEECSSSCCEECCSCSEEEECCCCSCSCTTCTTCTTSTTCSSSCBCCSCCSSSCC
T ss_pred cceeCcCCCCEeeEc--ccCCCCeeEEECCCCCCeEEcCCCeEEEEEEecccccccceeccccccccCCCcccCCCCCCC
Confidence 356799999654443 121 22 5799999975443221 111111111000 0 00112233468999998
Q ss_pred cccccc----ccCCCCC---cccchhHHHHH
Q psy8832 104 TCTTLW----RRNNNGE---PVCNACGLYFK 127 (144)
Q Consensus 104 ~~t~~W----R~~~~g~---~lCnaCglyy~ 127 (144)
.+...| |...++. ..|-.||-.|+
T Consensus 81 ~~a~~~q~q~rsade~mt~fy~C~~C~~~w~ 111 (113)
T 3h0g_I 81 HEAVFYQTHSRRGDTMMTLIYVCVHCGFAFE 111 (113)
T ss_dssp SCEEEECCCCSSCCCCCCCEEEESSSCCCCC
T ss_pred ceEEEEEEecccCCCCCeeEEEcCCCCCEEe
Confidence 887666 4555553 33988987654
No 15
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=84.44 E-value=0.79 Score=26.81 Aligned_cols=32 Identities=25% Similarity=0.504 Sum_probs=22.9
Q ss_pred CcccccCCCCCCCeeeeCCCCCcccccccccccc
Q psy8832 37 IKECVNCAANSTPLWRRDGTGHHLCNACGLYNRI 70 (144)
Q Consensus 37 ~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~ 70 (144)
...|.+|+.+ ++-.....|.+.|..||+-+..
T Consensus 5 ~~~CP~C~~~--~l~~d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTTEEEESSSCCBCCC
T ss_pred cEeCcCCCCc--ceEEcCCCCeEECcccCCcccc
Confidence 4579999863 4544445688999999996543
No 16
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=84.08 E-value=0.19 Score=28.12 Aligned_cols=30 Identities=23% Similarity=0.500 Sum_probs=23.0
Q ss_pred ccccCCCCCCCeeeeCCCCCcccccccccc
Q psy8832 39 ECVNCAANSTPLWRRDGTGHHLCNACGLYN 68 (144)
Q Consensus 39 ~C~~C~t~~tp~wrr~~~g~~lCnaCgly~ 68 (144)
.|..|+..+|.+-+.+..-..-|+|||-..
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCcc
Confidence 589999999998875433345799999754
No 17
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=81.19 E-value=1.9 Score=28.41 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=19.1
Q ss_pred CCCCcccccCCCCCCCeeeeC---CCCCccccccc
Q psy8832 34 NMDIKECVNCAANSTPLWRRD---GTGHHLCNACG 65 (144)
Q Consensus 34 ~~~~~~C~~C~t~~tp~wrr~---~~g~~lCnaCg 65 (144)
......|..|+..-+.+.|+- .=|..+|+.|-
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 40 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCL 40 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTS
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHc
Confidence 445668999998777665432 22444555543
No 18
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=80.86 E-value=0.3 Score=27.27 Aligned_cols=28 Identities=25% Similarity=0.530 Sum_probs=20.8
Q ss_pred ccccCCcccccccccCCCCCcccchhHH
Q psy8832 97 SCANCSTTCTTLWRRNNNGEPVCNACGL 124 (144)
Q Consensus 97 ~C~nC~t~~t~~WR~~~~g~~lCnaCgl 124 (144)
.|..|+..+|-+-+++..-..-|+|||-
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~ 29 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGA 29 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCC
Confidence 5899999999987754222444999985
No 19
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=79.66 E-value=0.68 Score=33.78 Aligned_cols=38 Identities=26% Similarity=0.422 Sum_probs=27.1
Q ss_pred cccccCCcccccccccCCCCCcccchhHHHHHhhCCCCccccccc
Q psy8832 96 VSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHNVFTILFYNIT 140 (144)
Q Consensus 96 ~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~~~~Rp~~l~~~ 140 (144)
-.|..|+..+|-+-+.+..-..-|+|||- .||+.+++.
T Consensus 105 VlC~~C~sPdT~L~k~~r~~~l~C~ACGa-------~~~V~~~k~ 142 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFHFLKCEACGA-------ETPIQHLLE 142 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSBCCCCSSSCC-------CCCCCC---
T ss_pred EECCCCCCcCcEEEEeCCEEEEEecCCCC-------Cccccchhh
Confidence 37999999999998754333555999975 788877664
No 20
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=77.26 E-value=1.5 Score=35.63 Aligned_cols=35 Identities=23% Similarity=0.486 Sum_probs=25.4
Q ss_pred CCCcccccCCCCCCCeeeeCCCCCccccccccccc
Q psy8832 35 MDIKECVNCAANSTPLWRRDGTGHHLCNACGLYNR 69 (144)
Q Consensus 35 ~~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r 69 (144)
.....|.+||.+.+.+-.....|+.+|..||+-..
T Consensus 19 ~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 19 NIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred cCCCcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 34567999998743343445678999999999654
No 21
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=76.03 E-value=1.6 Score=33.03 Aligned_cols=34 Identities=24% Similarity=0.502 Sum_probs=25.8
Q ss_pred CCCcccccCCCCCCCeeeeCCCCCcccccccccc
Q psy8832 35 MDIKECVNCAANSTPLWRRDGTGHHLCNACGLYN 68 (144)
Q Consensus 35 ~~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~ 68 (144)
.....|..||...+.+-.....|+++|..||+-.
T Consensus 19 n~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVL 52 (197)
T 3k1f_M 19 NIVLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (197)
T ss_dssp CCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBC
T ss_pred ccCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCc
Confidence 3455899999865555555677999999999953
No 22
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=73.65 E-value=1.9 Score=31.39 Aligned_cols=45 Identities=16% Similarity=0.301 Sum_probs=35.3
Q ss_pred CCCCcccccCCcccccccccCCCCCcccchhHHHHHhhCCC----Ccccc
Q psy8832 92 KRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHNVF----TILFY 137 (144)
Q Consensus 92 k~~~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~~~~----Rp~~l 137 (144)
...+..|.+|+.. -|.|-.-+-|-.||-.|.-.-|.-|+. |.++|
T Consensus 35 ~p~N~~CaDCga~-~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~L 83 (147)
T 3dwd_A 35 QDENNVCFECGAF-NPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTM 83 (147)
T ss_dssp STTTTBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC
T ss_pred CcCCCccCCCCCC-CCCeEEecccEeEhHhhChHHhcCCCCCCccccccc
Confidence 3456799999986 499998888999999998877777653 55554
No 23
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=73.01 E-value=1.7 Score=31.71 Aligned_cols=30 Identities=30% Similarity=0.568 Sum_probs=23.6
Q ss_pred cccccCCCCCCCeeeeCCCCCccccccccc
Q psy8832 38 KECVNCAANSTPLWRRDGTGHHLCNACGLY 67 (144)
Q Consensus 38 ~~C~~C~t~~tp~wrr~~~g~~lCnaCgly 67 (144)
-.|..|+..+|-+-+.+..-..-|+|||-.
T Consensus 105 VlC~~C~sPdT~L~k~~r~~~l~C~ACGa~ 134 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFHFLKCEACGAE 134 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSBCCCCSSSCCC
T ss_pred EECCCCCCcCcEEEEeCCEEEEEecCCCCC
Confidence 469999999999987543335699999974
No 24
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=72.95 E-value=1.7 Score=31.23 Aligned_cols=30 Identities=27% Similarity=0.517 Sum_probs=24.0
Q ss_pred cccccCCCCCCCeeeeCCCCCccccccccc
Q psy8832 38 KECVNCAANSTPLWRRDGTGHHLCNACGLY 67 (144)
Q Consensus 38 ~~C~~C~t~~tp~wrr~~~g~~lCnaCgly 67 (144)
-.|..|+..+|-+-+.+..=..-|+|||-.
T Consensus 103 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 132 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRISLLKCEACGAK 132 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTTEEECSTTSCC
T ss_pred EECCCCCCcCcEEEEcCCeEEEEccCCCCC
Confidence 469999999999987654445699999973
No 25
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=72.34 E-value=1.7 Score=31.33 Aligned_cols=30 Identities=30% Similarity=0.517 Sum_probs=20.5
Q ss_pred cccccCCCCCCCeeeeCCCCCccccccccc
Q psy8832 38 KECVNCAANSTPLWRRDGTGHHLCNACGLY 67 (144)
Q Consensus 38 ~~C~~C~t~~tp~wrr~~~g~~lCnaCgly 67 (144)
-.|..|+..+|-+-+.+..=..-|+|||-.
T Consensus 104 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 104 VECSTCKSLDTILKKEKKSWYIVCLACGAQ 133 (139)
T ss_dssp SSCCSSSSSCCCSCSSCSTTTSSCCC----
T ss_pred eECCCCCCcCcEEEEeCCeEEEEecCCCCC
Confidence 579999999999877543335699999873
No 26
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=71.87 E-value=2.1 Score=30.77 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=34.6
Q ss_pred CCCcccccCCcccccccccCCCCCcccchhHHHHHhhCCC----Ccccc
Q psy8832 93 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHNVF----TILFY 137 (144)
Q Consensus 93 ~~~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~~~~----Rp~~l 137 (144)
..+..|.+|+... |.|-.-+-|-.+|-.|.-.-|.-|++ |.++|
T Consensus 34 p~N~~CaDCga~~-P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~l 81 (138)
T 2owa_A 34 PENRTCFDCESRN-PTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDL 81 (138)
T ss_dssp GGGGBCTTTCCBS-CCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTT
T ss_pred cCCCcCCCCcCCC-CCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCc
Confidence 3467999999864 99998888999999998877777753 55554
No 27
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=69.00 E-value=1.4 Score=27.28 Aligned_cols=26 Identities=35% Similarity=0.935 Sum_probs=19.4
Q ss_pred CCcccccCCCCCCCeeeeCCCCCccccccccccc
Q psy8832 36 DIKECVNCAANSTPLWRRDGTGHHLCNACGLYNR 69 (144)
Q Consensus 36 ~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r 69 (144)
..-+|.+||...-| +.+|..||.|..
T Consensus 29 ~l~~c~~cGe~~~~--------H~vc~~CG~Y~g 54 (60)
T 3v2d_5 29 TLVPCPECKAMKPP--------HTVCPECGYYAG 54 (60)
T ss_dssp CCEECTTTCCEECT--------TSCCTTTCEETT
T ss_pred ceeECCCCCCeecc--------eEEcCCCCcCCC
Confidence 45689999975555 579999997743
No 28
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=68.77 E-value=2.6 Score=26.00 Aligned_cols=27 Identities=33% Similarity=0.997 Sum_probs=20.0
Q ss_pred CCCCcccccCCCCCCCeeeeCCCCCcccccccccc
Q psy8832 34 NMDIKECVNCAANSTPLWRRDGTGHHLCNACGLYN 68 (144)
Q Consensus 34 ~~~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~ 68 (144)
.....+|.+||...-| +.+|..||.|.
T Consensus 27 ~p~l~~c~~cG~~~~p--------H~vc~~CG~Y~ 53 (60)
T 2zjr_Z 27 APNLTECPQCHGKKLS--------HHICPNCGYYD 53 (60)
T ss_dssp CCCCEECTTTCCEECT--------TBCCTTTCBSS
T ss_pred CCCceECCCCCCEeCC--------ceEcCCCCcCC
Confidence 3445689999976554 57999999774
No 29
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=68.66 E-value=2.3 Score=30.62 Aligned_cols=29 Identities=34% Similarity=0.635 Sum_probs=20.3
Q ss_pred cccccCCcccccccccCCCCCcccchhHH
Q psy8832 96 VSCANCSTTCTTLWRRNNNGEPVCNACGL 124 (144)
Q Consensus 96 ~~C~nC~t~~t~~WR~~~~g~~lCnaCgl 124 (144)
-.|..|+..+|-+=+++..-..-|+|||-
T Consensus 104 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa 132 (139)
T 3cw2_K 104 VECSTCKSLDTILKKEKKSWYIVCLACGA 132 (139)
T ss_dssp SSCCSSSSSCCCSCSSCSTTTSSCCC---
T ss_pred eECCCCCCcCcEEEEeCCeEEEEecCCCC
Confidence 47999999999998754333556999986
No 30
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.42 E-value=4.1 Score=29.22 Aligned_cols=43 Identities=21% Similarity=0.397 Sum_probs=34.0
Q ss_pred CCcccccCCcccccccccCCCCCcccchhHHHHHhhCC----CCcccc
Q psy8832 94 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHNV----FTILFY 137 (144)
Q Consensus 94 ~~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~~~----~Rp~~l 137 (144)
.+..|.+|+.. -|.|-.-+-|-.||-.|.-..+.-|+ -|.++|
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~l 74 (141)
T 2crr_A 28 DNKYCADCEAK-GPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNL 74 (141)
T ss_dssp GGSSCSSSCCS-SCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSS
T ss_pred cCCcCCCCCCC-CCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCC
Confidence 45689999976 58999888899999999887777763 455555
No 31
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.13 E-value=4.2 Score=29.54 Aligned_cols=44 Identities=16% Similarity=0.322 Sum_probs=35.3
Q ss_pred CCCcccccCCcccccccccCCCCCcccchhHHHHHhhCCC----Ccccc
Q psy8832 93 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHNVF----TILFY 137 (144)
Q Consensus 93 ~~~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~~~~----Rp~~l 137 (144)
..+..|.+|+.. .|.|-.-+-|-.||-.|.-.-|..|++ |.++|
T Consensus 27 p~N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~L 74 (149)
T 2crw_A 27 PTNKVCFDCGAK-NPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTEL 74 (149)
T ss_dssp TTTSBCSSSCCB-SCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSS
T ss_pred cCCCcCCCCcCC-CCCcEEeccCEEEchhcchhhccCCCCCCeeecccc
Confidence 356799999874 689998888999999998888877753 66666
No 32
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=65.43 E-value=1.5 Score=35.42 Aligned_cols=71 Identities=18% Similarity=0.367 Sum_probs=45.6
Q ss_pred CCcccccCCCCCCCeeee--C-CCC--CcccccccccccccCCCCCCccccchhhhhhcCCCCCCcccccCCccccc-cc
Q psy8832 36 DIKECVNCAANSTPLWRR--D-GTG--HHLCNACGLYNRINGVNRPPVRTNQKKALQQTGNKRSGVSCANCSTTCTT-LW 109 (144)
Q Consensus 36 ~~~~C~~C~t~~tp~wrr--~-~~g--~~lCnaCgly~r~~g~~RP~~k~kkkka~~~s~~k~~~~~C~nC~t~~t~-~W 109 (144)
....|-.||+...--+-+ + .+| ...|.-|+--|... -..|.+|+.++.- .|
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~-----------------------R~~C~~Cg~~~~l~y~ 237 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV-----------------------RIKCSHCEESKHLAYL 237 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC-----------------------TTSCSSSCCCSCCEEE
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec-----------------------CcCCcCCCCCCCeeEE
Confidence 355899999877654444 3 356 36999999866421 1279999887544 45
Q ss_pred ccCC-------CC--CcccchhHHHHHhh
Q psy8832 110 RRNN-------NG--EPVCNACGLYFKLH 129 (144)
Q Consensus 110 R~~~-------~g--~~lCnaCglyy~~~ 129 (144)
.-.+ .+ -.+|..|+-|.|.-
T Consensus 238 ~~e~~~~~~~~~~~r~e~C~~C~~YlK~~ 266 (309)
T 2fiy_A 238 SLEHDGQPAEKAVLRAETCPSCQGYLKQF 266 (309)
T ss_dssp CCCC-CCCSTTCSEEEEEETTTTEEEEEE
T ss_pred EecCccccCCCcceEEEEcccccchHhhh
Confidence 3222 22 44699999887754
No 33
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=64.98 E-value=2.3 Score=34.60 Aligned_cols=31 Identities=26% Similarity=0.647 Sum_probs=24.0
Q ss_pred CcccccCCCCCCCeeeeCCCCCccccccccc
Q psy8832 37 IKECVNCAANSTPLWRRDGTGHHLCNACGLY 67 (144)
Q Consensus 37 ~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly 67 (144)
...|.+||...+.+--....|+++|..||+-
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlV 51 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCBE
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCCC
Confidence 4579999975555555567899999999985
No 34
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=63.92 E-value=3.3 Score=29.48 Aligned_cols=94 Identities=17% Similarity=0.337 Sum_probs=24.2
Q ss_pred cCCCCCcccccCCCCCCCeeeeCCC-C--CcccccccccccccCC----CCCCccccchh-hhh-h---cCCCCCCcccc
Q psy8832 32 MLNMDIKECVNCAANSTPLWRRDGT-G--HHLCNACGLYNRINGV----NRPPVRTNQKK-ALQ-Q---TGNKRSGVSCA 99 (144)
Q Consensus 32 ~~~~~~~~C~~C~t~~tp~wrr~~~-g--~~lCnaCgly~r~~g~----~RP~~k~kkkk-a~~-~---s~~k~~~~~C~ 99 (144)
......+-|..||.-=.|. .+.+ + .+.|..|+..+..... +....+...+. .+. . ....+....|.
T Consensus 19 ~~~~~~~FCPeCgNmL~pk--ed~~~~~l~~~CrtCgY~~~~~~~~v~r~~~~~~~~e~~~vv~dv~~dptlp~t~~~Cp 96 (133)
T 3qt1_I 19 SHMTTFRFCRDCNNMLYPR--EDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECP 96 (133)
T ss_dssp ---CCCCBCTTTCCBCBCC--BCTTTCCBCCBCSSSCCBCCCSCSEEEECCC----------------------------
T ss_pred ccccCCeeCCCCCCEeeEC--ccCCCceeEEECCCCCCcEEcCCceEEEEEeeccccccceeEeeccccccCCcccCCCC
Confidence 3556688999999766553 2221 2 5799999975543221 11110000000 000 0 01122346899
Q ss_pred cCCccccccc----ccCCCC---CcccchhHHHHH
Q psy8832 100 NCSTTCTTLW----RRNNNG---EPVCNACGLYFK 127 (144)
Q Consensus 100 nC~t~~t~~W----R~~~~g---~~lCnaCglyy~ 127 (144)
+|+..+...| |.+.++ -.+|-.||-.|+
T Consensus 97 kCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~ 131 (133)
T 3qt1_I 97 KCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWK 131 (133)
T ss_dssp -----------------------------------
T ss_pred CCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEeC
Confidence 9998887665 445555 445999998776
No 35
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=63.89 E-value=6 Score=27.44 Aligned_cols=95 Identities=16% Similarity=0.357 Sum_probs=50.7
Q ss_pred CCcccccCCCCCCCeeeeCC-CCCcccccccccccccCC----CCCCccccchhhh----h-hcCCCCCCcccccCCccc
Q psy8832 36 DIKECVNCAANSTPLWRRDG-TGHHLCNACGLYNRINGV----NRPPVRTNQKKAL----Q-QTGNKRSGVSCANCSTTC 105 (144)
Q Consensus 36 ~~~~C~~C~t~~tp~wrr~~-~g~~lCnaCgly~r~~g~----~RP~~k~kkkka~----~-~s~~k~~~~~C~nC~t~~ 105 (144)
...-|..||.-=.|.=-+.+ .+.+.|..|+..+..... .......+.+..+ . -....+....|..|+..+
T Consensus 3 ~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~~~~v~~~~~~~~~~e~~~v~~~~~~~~t~p~t~~~Cp~C~~~~ 82 (122)
T 1twf_I 3 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKCHSRE 82 (122)
T ss_dssp CCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECSCSEEEEEESSCCTTSSTTCCTTGGGCTTSCCCCCCCTTTCCCC
T ss_pred CCCcccccCccCcccccCcCCCCEEECCcCCCeeecCccEEEEEeecccccccccccccccccccccccCCCCCCCCCCE
Confidence 35679999965444311112 235799999876543321 0010000000000 0 011223457899999988
Q ss_pred cccc----ccCCCCC---cccchhHHHHHhhC
Q psy8832 106 TTLW----RRNNNGE---PVCNACGLYFKLHN 130 (144)
Q Consensus 106 t~~W----R~~~~g~---~lCnaCglyy~~~~ 130 (144)
...| |.+.++. ..|-.||-.|+-.+
T Consensus 83 a~~~q~q~rsade~~t~fy~C~~C~~~w~~nn 114 (122)
T 1twf_I 83 NVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQ 114 (122)
T ss_dssp EEEEECSSCCTTCCCCEEEEETTTCCEEECCT
T ss_pred EEEEEecCccCCCCceEEEEeCCCCCEeccCC
Confidence 7766 4455553 45999998877654
No 36
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=62.94 E-value=1.7 Score=32.43 Aligned_cols=28 Identities=29% Similarity=0.640 Sum_probs=21.5
Q ss_pred ccccCCcccccccccCCCC--CcccchhHH
Q psy8832 97 SCANCSTTCTTLWRRNNNG--EPVCNACGL 124 (144)
Q Consensus 97 ~C~nC~t~~t~~WR~~~~g--~~lCnaCgl 124 (144)
.|..|+..+|-|-+...++ ...|+|||-
T Consensus 98 lC~~C~sPdT~L~k~~~~r~~~l~C~ACGa 127 (170)
T 2g2k_A 98 LCPECENPETDLHVNPKKQTIGNSCKACGY 127 (170)
T ss_dssp SCTTTSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred ECCCCCCCccEEEEecCCCEEEEEccccCC
Confidence 7999999999998732333 445999975
No 37
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=62.33 E-value=9.5 Score=24.50 Aligned_cols=33 Identities=30% Similarity=0.568 Sum_probs=18.3
Q ss_pred CCCCCcccccCCCCCCCeeeeC---CCCCccccccc
Q psy8832 33 LNMDIKECVNCAANSTPLWRRD---GTGHHLCNACG 65 (144)
Q Consensus 33 ~~~~~~~C~~C~t~~tp~wrr~---~~g~~lCnaCg 65 (144)
.+.....|..|+..-+.+-||- .=|..+|+.|-
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs 52 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCS 52 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGG
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHh
Confidence 3455667888887766554432 22444555543
No 38
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=59.58 E-value=3.4 Score=33.38 Aligned_cols=18 Identities=33% Similarity=0.678 Sum_probs=11.1
Q ss_pred CcccccCCccc-------ccccccC
Q psy8832 95 GVSCANCSTTC-------TTLWRRN 112 (144)
Q Consensus 95 ~~~C~nC~t~~-------t~~WR~~ 112 (144)
..+|.+||.-. .|.||.-
T Consensus 42 ~~vC~~CG~Vl~e~~id~~~EwR~F 66 (345)
T 3k7a_M 42 DVVCALCGLVLSDKLVDTRSEWRTF 66 (345)
T ss_dssp SCCCSSSCCCCCCCCCCTTCCCCCC
T ss_pred CEecCCCCeEcccccccCCcccccc
Confidence 45777777644 3677754
No 39
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=59.48 E-value=3.2 Score=29.79 Aligned_cols=38 Identities=24% Similarity=0.625 Sum_probs=30.8
Q ss_pred CCcccccCCCCCCCeeeeCCCCCcccccccccccccCCC
Q psy8832 36 DIKECVNCAANSTPLWRRDGTGHHLCNACGLYNRINGVN 74 (144)
Q Consensus 36 ~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~~g~~ 74 (144)
....|..||+. -|.|-.-.-|-++|..|.-.++.-|.+
T Consensus 35 ~N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~h 72 (138)
T 2owa_A 35 ENRTCFDCESR-NPTWLSLSFAVFICLNCSSDHRKMGVH 72 (138)
T ss_dssp GGGBCTTTCCB-SCCEEETTTTEEECHHHHHHHHTTCTT
T ss_pred CCCcCCCCcCC-CCCeEEecCCEEEhHhhhHHHhCCCCC
Confidence 45789999976 599998888999999998766665544
No 40
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=59.09 E-value=2.6 Score=30.27 Aligned_cols=28 Identities=29% Similarity=0.602 Sum_probs=22.0
Q ss_pred ccccCCcccccccccCCCCCcccchhHH
Q psy8832 97 SCANCSTTCTTLWRRNNNGEPVCNACGL 124 (144)
Q Consensus 97 ~C~nC~t~~t~~WR~~~~g~~lCnaCgl 124 (144)
.|..|+..+|-+=+++..-...|+|||-
T Consensus 104 lC~~C~sPdT~l~k~~r~~~l~C~ACGa 131 (138)
T 1nee_A 104 ICHECNRPDTRIIREGRISLLKCEACGA 131 (138)
T ss_dssp HHTCCSSCSSCCEEETTTTEEECSTTSC
T ss_pred ECCCCCCcCcEEEEcCCeEEEEccCCCC
Confidence 7999999999998754333455999985
No 41
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=58.85 E-value=5.7 Score=28.23 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=34.4
Q ss_pred CCCcccccCCcccccccccCCCCCcccchhHHHHHhhCC----CCcccc
Q psy8832 93 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHNV----FTILFY 137 (144)
Q Consensus 93 ~~~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~~~----~Rp~~l 137 (144)
..+..|.+|+.. -|.|-.-+-|-.||-.|.-..+.-|+ -|.++|
T Consensus 25 p~N~~CaDCg~~-~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~l 72 (134)
T 2iqj_A 25 EDNKFCADCQSK-GPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNL 72 (134)
T ss_dssp GGGGBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTT
T ss_pred cCCCcCCcCcCC-CCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccc
Confidence 346799999986 48999888999999999887777774 344544
No 42
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=54.74 E-value=3.5 Score=29.33 Aligned_cols=38 Identities=32% Similarity=0.650 Sum_probs=30.8
Q ss_pred CCcccccCCCCCCCeeeeCCCCCcccccccccccccCCC
Q psy8832 36 DIKECVNCAANSTPLWRRDGTGHHLCNACGLYNRINGVN 74 (144)
Q Consensus 36 ~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~~g~~ 74 (144)
....|..||+. -|.|-.-.-|-++|..|.-.++.-|.+
T Consensus 26 ~N~~CaDCg~~-~P~WaS~n~GvfiC~~CsgiHR~lG~h 63 (134)
T 2iqj_A 26 DNKFCADCQSK-GPRWASWNIGVFICIRCAGIHRNLGVH 63 (134)
T ss_dssp GGGBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHHCTT
T ss_pred CCCcCCcCcCC-CCCeEEecCCEEEhHhhhHHHhcCCCC
Confidence 45789999986 599998889999999997776665543
No 43
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=52.56 E-value=8 Score=28.53 Aligned_cols=43 Identities=21% Similarity=0.407 Sum_probs=34.0
Q ss_pred CCcccccCCcccccccccCCCCCcccchhHHHHHhhCCC----Ccccc
Q psy8832 94 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHNVF----TILFY 137 (144)
Q Consensus 94 ~~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~~~~----Rp~~l 137 (144)
.+..|..|+.. -|.|-.-+-|-.||-.|.-.-|..|+. |.++|
T Consensus 21 ~N~~CaDCga~-~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltL 67 (163)
T 3sub_A 21 SNNKCFDCGIS-NPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKM 67 (163)
T ss_dssp GGGBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTT
T ss_pred CCCccccCCCC-CCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccc
Confidence 35699999985 699998888999999998777777653 55554
No 44
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.03 E-value=2.1 Score=31.44 Aligned_cols=36 Identities=28% Similarity=0.502 Sum_probs=25.9
Q ss_pred cccccCCcccccccccCCCC--CcccchhHHHHHhhCCCCccccc
Q psy8832 96 VSCANCSTTCTTLWRRNNNG--EPVCNACGLYFKLHNVFTILFYN 138 (144)
Q Consensus 96 ~~C~nC~t~~t~~WR~~~~g--~~lCnaCglyy~~~~~~Rp~~l~ 138 (144)
-.|..|+..+|-|-+...++ ..-|+|||- .||+.++
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa-------~~~V~~~ 141 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGY-------RGMLDTH 141 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCC-------EEECCCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCC-------CCcccch
Confidence 37999999999997622233 445999985 6676664
No 45
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=51.28 E-value=6.9 Score=28.41 Aligned_cols=39 Identities=28% Similarity=0.534 Sum_probs=31.6
Q ss_pred CCCcccccCCCCCCCeeeeCCCCCcccccccccccccCCC
Q psy8832 35 MDIKECVNCAANSTPLWRRDGTGHHLCNACGLYNRINGVN 74 (144)
Q Consensus 35 ~~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~~g~~ 74 (144)
.....|..||+. -|.|-.-.-|-++|..|.-..+.-|.+
T Consensus 36 p~N~~CaDCga~-~P~WaS~nlGvfiC~~CSgiHR~LG~h 74 (147)
T 3dwd_A 36 DENNVCFECGAF-NPQWVSVTYGIWICLECSGRHRGLGVH 74 (147)
T ss_dssp TTTTBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHHCTT
T ss_pred cCCCccCCCCCC-CCCeEEecccEeEhHhhChHHhcCCCC
Confidence 457799999986 599998888999999998776665543
No 46
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=51.13 E-value=5.5 Score=28.50 Aligned_cols=37 Identities=19% Similarity=0.449 Sum_probs=29.6
Q ss_pred CCcccccCCCCCCCeeeeCCCCCcccccccccccccCC
Q psy8832 36 DIKECVNCAANSTPLWRRDGTGHHLCNACGLYNRINGV 73 (144)
Q Consensus 36 ~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~~g~ 73 (144)
....|..||+. -|.|-.-.-|-++|..|.-.++.-|.
T Consensus 24 ~N~~CaDCg~~-~P~WaS~n~GvfiC~~CsgiHR~LG~ 60 (140)
T 2olm_A 24 HNRKCFDCDQR-GPTYVNMTVGSFVCTSCSGSLRGLNP 60 (140)
T ss_dssp GGGSCTTTCSS-CCCEEETTTTEEECHHHHHHHTTSSS
T ss_pred CCCcCCCCCCC-CCCceeeccCEEEchhccchhccCCC
Confidence 35689999975 79999888899999999776665443
No 47
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.95 E-value=6.2 Score=28.28 Aligned_cols=37 Identities=35% Similarity=0.681 Sum_probs=30.1
Q ss_pred CCcccccCCCCCCCeeeeCCCCCcccccccccccccCC
Q psy8832 36 DIKECVNCAANSTPLWRRDGTGHHLCNACGLYNRINGV 73 (144)
Q Consensus 36 ~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~~g~ 73 (144)
....|..||+. -|.|-.-.-|-++|..|.-.++.-|.
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~ 64 (141)
T 2crr_A 28 DNKYCADCEAK-GPRWASWNIGVFICIRCAGIHRNLGV 64 (141)
T ss_dssp GGSSCSSSCCS-SCCSEETTTTEECCHHHHHHHHHHCT
T ss_pred cCCcCCCCCCC-CCCeEEeccCeEEhhhhhHhHhcCCC
Confidence 45689999976 58999888899999999777666553
No 48
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=50.90 E-value=3.9 Score=29.63 Aligned_cols=38 Identities=34% Similarity=0.681 Sum_probs=30.5
Q ss_pred CCcccccCCCCCCCeeeeCCCCCcccccccccccccCCC
Q psy8832 36 DIKECVNCAANSTPLWRRDGTGHHLCNACGLYNRINGVN 74 (144)
Q Consensus 36 ~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~~g~~ 74 (144)
....|.+||.. -|.|-.-.-|-++|..|.-..+.-|.+
T Consensus 36 ~N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~h 73 (144)
T 2p57_A 36 TNKACFDCGAK-NPSWASITYGVFLCIDCSGVHRSLGVH 73 (144)
T ss_dssp GGGBCTTTCCB-SCCEEEGGGTEEECHHHHHHHHHHCTT
T ss_pred CCCcCCCCcCC-CCCeEEeccCEEEhhhchHHHcCCCCC
Confidence 46799999975 599998888999999998766655543
No 49
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=49.17 E-value=3.6 Score=30.64 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=25.0
Q ss_pred cccccCCCCCCCeeeeCCCC--Ccccccccccccc
Q psy8832 38 KECVNCAANSTPLWRRDGTG--HHLCNACGLYNRI 70 (144)
Q Consensus 38 ~~C~~C~t~~tp~wrr~~~g--~~lCnaCgly~r~ 70 (144)
-.|..|+..+|-+-+...++ ..-|+|||-....
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~V 131 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGML 131 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCCS
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCcccc
Confidence 46999999999998743444 4589999986443
No 50
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=47.74 E-value=7.2 Score=27.89 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=30.4
Q ss_pred CCcccccCCcccccccccCCCCCcccchhHHHHHhhCC
Q psy8832 94 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHNV 131 (144)
Q Consensus 94 ~~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~~~ 131 (144)
.+..|.+|+.. .|.|-.-+-|-.||-.|.-..+.-|+
T Consensus 24 ~N~~CaDCg~~-~P~WaS~n~GvfiC~~CsgiHR~LG~ 60 (140)
T 2olm_A 24 HNRKCFDCDQR-GPTYVNMTVGSFVCTSCSGSLRGLNP 60 (140)
T ss_dssp GGGSCTTTCSS-CCCEEETTTTEEECHHHHHHHTTSSS
T ss_pred CCCcCCCCCCC-CCCceeeccCEEEchhccchhccCCC
Confidence 46799999975 68999888899999999876666554
No 51
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=46.96 E-value=8.1 Score=27.90 Aligned_cols=44 Identities=16% Similarity=0.352 Sum_probs=34.2
Q ss_pred CCCcccccCCcccccccccCCCCCcccchhHHHHHhhCC----CCcccc
Q psy8832 93 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHNV----FTILFY 137 (144)
Q Consensus 93 ~~~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~~~----~Rp~~l 137 (144)
..+..|.+|+.. -|.|-.-+-|-.||-.|.-.-+.-|+ -|.++|
T Consensus 35 p~N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~L 82 (144)
T 2p57_A 35 PTNKACFDCGAK-NPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTEL 82 (144)
T ss_dssp GGGGBCTTTCCB-SCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSS
T ss_pred CCCCcCCCCcCC-CCCeEEeccCEEEhhhchHHHcCCCCCCCeeeeccc
Confidence 356799999975 58998888899999999887887774 345554
No 52
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=46.91 E-value=4.1 Score=33.26 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=0.0
Q ss_pred ccccCCcccccccccCCCCCcccchhHH
Q psy8832 97 SCANCSTTCTTLWRRNNNGEPVCNACGL 124 (144)
Q Consensus 97 ~C~nC~t~~t~~WR~~~~g~~lCnaCgl 124 (144)
.|..|.....|+-..+.....||+.|.-
T Consensus 401 ~C~~Cs~~~~~~~~~~~~~~rvC~~C~~ 428 (434)
T 3mpx_A 401 VCRNCSRNKYPLKYLKDRMAKVCDGCFG 428 (434)
T ss_dssp ----------------------------
T ss_pred eehhhCCCeeeCCCCCCCcCEecHHHHH
Confidence 5666665555553222222456777754
No 53
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=45.44 E-value=9 Score=29.61 Aligned_cols=36 Identities=28% Similarity=0.623 Sum_probs=28.9
Q ss_pred CCcccccCCCCCCCeeeeCCCCCcccccccccccccC
Q psy8832 36 DIKECVNCAANSTPLWRRDGTGHHLCNACGLYNRING 72 (144)
Q Consensus 36 ~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~~g 72 (144)
....|..||+. -|.|-.-.-|.++|..|.-..+.-|
T Consensus 41 ~n~~c~dc~~~-~p~w~s~~~g~~~c~~cs~~hr~lg 76 (301)
T 2b0o_E 41 GNSQCCDCGAA-DPTWLSTNLGVLTCIQCSGVHRELG 76 (301)
T ss_dssp TTTBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHHC
T ss_pred CCCcCCCCCCC-CCCeEEeecCeEEcHHHHHHHHhhC
Confidence 46799999985 5999999999999999965544433
No 54
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=44.27 E-value=8.3 Score=22.95 Aligned_cols=29 Identities=14% Similarity=0.355 Sum_probs=20.2
Q ss_pred CcccccCCCCCCCe--eeeCCCCCcccccccc
Q psy8832 37 IKECVNCAANSTPL--WRRDGTGHHLCNACGL 66 (144)
Q Consensus 37 ~~~C~~C~t~~tp~--wrr~~~g~~lCnaCgl 66 (144)
...|+-||.+.... .=.|+ |.+.||.|.-
T Consensus 11 ~~~CSFCGk~~~ev~~LIaGp-gv~IC~eCi~ 41 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIAGP-SVYICDECVD 41 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEECS-SCEEEHHHHH
T ss_pred CcEecCCCCCHHHhcccCCCC-CCEehHHHHH
Confidence 35799999876543 33454 6689999864
No 55
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=43.79 E-value=7.8 Score=24.50 Aligned_cols=28 Identities=14% Similarity=0.335 Sum_probs=20.2
Q ss_pred cccccCCCCCCCe--eeeCCCCCcccccccc
Q psy8832 38 KECVNCAANSTPL--WRRDGTGHHLCNACGL 66 (144)
Q Consensus 38 ~~C~~C~t~~tp~--wrr~~~g~~lCnaCgl 66 (144)
..||-||.+.... .=.|+ |.+.||.|.-
T Consensus 19 ~~CSFCGK~e~eV~~LIaGp-gvyICdeCI~ 48 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGP-SVYICDECVD 48 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECS-SCEEEHHHHH
T ss_pred cEecCCCCCHHHHcccCCCC-CCChhHHHHH
Confidence 5799999877543 33454 6789999964
No 56
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=42.94 E-value=11 Score=27.39 Aligned_cols=50 Identities=24% Similarity=0.610 Sum_probs=34.2
Q ss_pred CCcccccCCCCCCCeeeeCCCCCcccccccccccccCCCCCCccccchhhhhhcCCCCCCcccccCCcccccccccCCCC
Q psy8832 36 DIKECVNCAANSTPLWRRDGTGHHLCNACGLYNRINGVNRPPVRTNQKKALQQTGNKRSGVSCANCSTTCTTLWRRNNNG 115 (144)
Q Consensus 36 ~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~~g~~RP~~k~kkkka~~~s~~k~~~~~C~nC~t~~t~~WR~~~~g 115 (144)
....|..|+.+-+.+ ++.| .+|..|..+ +|..|+. |.+ .++
T Consensus 67 ~~~~C~~C~~~fg~l---~~~g-~~C~~C~~~-----------------------------VC~~C~~-----~~~-~~~ 107 (153)
T 2zet_C 67 NETHCARCLQPYRLL---LNSR-RQCLECSLF-----------------------------VCKSCSH-----AHP-EEQ 107 (153)
T ss_dssp GGTBCTTTCCBGGGC---SSCC-EECTTTCCE-----------------------------ECGGGEE-----CCS-SSS
T ss_pred CCccchhhcCccccc---cCCC-CcCCCCCch-----------------------------hhccccc-----ccC-CCC
Confidence 467899999776655 4444 478888652 7888885 333 345
Q ss_pred CcccchhHH
Q psy8832 116 EPVCNACGL 124 (144)
Q Consensus 116 ~~lCnaCgl 124 (144)
..+|+.|..
T Consensus 108 ~W~C~vC~k 116 (153)
T 2zet_C 108 GWLCDPCHL 116 (153)
T ss_dssp SCEEHHHHH
T ss_pred cEeeHHHHH
Confidence 689999954
No 57
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=42.80 E-value=3.6 Score=28.67 Aligned_cols=35 Identities=20% Similarity=0.431 Sum_probs=20.1
Q ss_pred cCCCCCcccccCCCCCCCeeeeCCCCCcccccccccccc
Q psy8832 32 MLNMDIKECVNCAANSTPLWRRDGTGHHLCNACGLYNRI 70 (144)
Q Consensus 32 ~~~~~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~ 70 (144)
..+.+...|..||-..+- -.-|-..|+||-.|++.
T Consensus 24 ~~~~~~~~C~VCgd~a~G----~HyGv~sC~aCk~FFRR 58 (117)
T 4hn5_A 24 ASNAPPKLCLVCSDEASG----CHYGVLTCGSCKVFFKR 58 (117)
T ss_dssp ------CBCTTTCSBCCE----EETTEEECHHHHHHHHH
T ss_pred CCCCCCCcCCcCCCcCcc----cccCCcccchhhhhhhc
Confidence 344556789999954321 12455689999888763
No 58
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.49 E-value=8.7 Score=28.12 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=24.6
Q ss_pred cccccCCCCCCCeeeeCCCC--Ccccccccccccc
Q psy8832 38 KECVNCAANSTPLWRRDGTG--HHLCNACGLYNRI 70 (144)
Q Consensus 38 ~~C~~C~t~~tp~wrr~~~g--~~lCnaCgly~r~ 70 (144)
-.|..|+..+|-+-....++ ..-|+|||-....
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~~V 138 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGML 138 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEEC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCCCcc
Confidence 47999999999987633344 4589999985443
No 59
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=42.14 E-value=4.8 Score=32.71 Aligned_cols=19 Identities=32% Similarity=0.650 Sum_probs=12.5
Q ss_pred CCcccccCCccc-------ccccccC
Q psy8832 94 SGVSCANCSTTC-------TTLWRRN 112 (144)
Q Consensus 94 ~~~~C~nC~t~~-------t~~WR~~ 112 (144)
-..+|.+||.-. .|.||.-
T Consensus 41 G~~vC~~CGlVl~e~~iD~g~EWR~f 66 (345)
T 4bbr_M 41 GDVVCALCGLVLSDKLVDTRSEWRTF 66 (345)
T ss_dssp TEEEETTTCBEEESCCBCHHHHHTTT
T ss_pred CcEEeCCCCCCccCcccccCccccCC
Confidence 345888888543 4778854
No 60
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.53 E-value=30 Score=22.03 Aligned_cols=34 Identities=24% Similarity=0.585 Sum_probs=22.5
Q ss_pred CCCCCcccccCCCCCCCeeeeC---CCCCcccccccc
Q psy8832 33 LNMDIKECVNCAANSTPLWRRD---GTGHHLCNACGL 66 (144)
Q Consensus 33 ~~~~~~~C~~C~t~~tp~wrr~---~~g~~lCnaCgl 66 (144)
.+.....|..|+..-+.+-||- .=|..+|..|-.
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 4556678999998876665542 336667777744
No 61
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=40.79 E-value=9.6 Score=30.12 Aligned_cols=39 Identities=18% Similarity=0.357 Sum_probs=31.3
Q ss_pred CCCcccccCCcccccccccCCCCCcccchhHHHHHhhCCC
Q psy8832 93 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHNVF 132 (144)
Q Consensus 93 ~~~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~~~~ 132 (144)
..+..|..|+.. .|.|-.-+-|-.+|-.|.---|.-|+.
T Consensus 35 ~~n~~c~dc~~~-~~~~~~~~~~~~~c~~c~~~hr~~~~~ 73 (329)
T 3o47_A 35 DENNVCFECGAF-NPQWVSVTYGIWICLECSGRHRGLGVH 73 (329)
T ss_dssp TTTTBCTTTCCB-SCCEEEGGGTEEECHHHHHHHHHHCTT
T ss_pred CCCCcCCCCCCC-CCCeEEecCCEEEChhhhhhhcccCCC
Confidence 346699999985 578988888999999998877776643
No 62
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=40.77 E-value=24 Score=24.89 Aligned_cols=53 Identities=17% Similarity=0.500 Sum_probs=33.1
Q ss_pred CCcccccCCCCCCCeeeeCCCCCcccccccccccccCCCCCCccccchhhhhhcCCCCCCcccccCCcccccccccCCCC
Q psy8832 36 DIKECVNCAANSTPLWRRDGTGHHLCNACGLYNRINGVNRPPVRTNQKKALQQTGNKRSGVSCANCSTTCTTLWRRNNNG 115 (144)
Q Consensus 36 ~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~~g~~RP~~k~kkkka~~~s~~k~~~~~C~nC~t~~t~~WR~~~~g 115 (144)
....|..|+.+.+.+ ++.| -+|..|..+ +|..|+...+.- ....
T Consensus 54 ~~~~C~~C~~~~g~l---~~~g-~~C~~C~~~-----------------------------VC~~C~~~~~~~---~~~~ 97 (134)
T 1zbd_B 54 GVNRCILCGEQLGML---GSAS-VVCEDCKKN-----------------------------VCTKCGVETSNN---RPHP 97 (134)
T ss_dssp SSSBCSSSCCBCSTT---SCCE-EECTTTCCE-----------------------------EETTSEEECCCS---SSSC
T ss_pred CCccccccCCCcccc---cCCC-CCCCCCCcc-----------------------------cccccCCccCCC---CCcc
Confidence 456899999776543 3334 477777552 788887754321 1223
Q ss_pred CcccchhHH
Q psy8832 116 EPVCNACGL 124 (144)
Q Consensus 116 ~~lCnaCgl 124 (144)
..+|+.|..
T Consensus 98 ~W~C~vC~k 106 (134)
T 1zbd_B 98 VWLCKICLE 106 (134)
T ss_dssp CEEEHHHHH
T ss_pred ceechhhHH
Confidence 578999954
No 63
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=40.47 E-value=13 Score=25.83 Aligned_cols=33 Identities=18% Similarity=0.388 Sum_probs=17.7
Q ss_pred CCCCCcccccCCCCCCCeeeeC---CCCCccccccc
Q psy8832 33 LNMDIKECVNCAANSTPLWRRD---GTGHHLCNACG 65 (144)
Q Consensus 33 ~~~~~~~C~~C~t~~tp~wrr~---~~g~~lCnaCg 65 (144)
++.....|..|++.-+.+.|+- .=|..+|..|-
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs 50 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCS 50 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGE
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCHHHh
Confidence 4445578999999877765542 22444555543
No 64
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.55 E-value=12 Score=27.04 Aligned_cols=38 Identities=34% Similarity=0.657 Sum_probs=30.9
Q ss_pred CCcccccCCCCCCCeeeeCCCCCcccccccccccccCCC
Q psy8832 36 DIKECVNCAANSTPLWRRDGTGHHLCNACGLYNRINGVN 74 (144)
Q Consensus 36 ~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~~g~~ 74 (144)
....|..||+. -|.|-.-.-|-++|..|.-.++.-|.+
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~h 65 (149)
T 2crw_A 28 TNKVCFDCGAK-NPSWASITYGVFLCIDCSGSHRSLGVH 65 (149)
T ss_dssp TTSBCSSSCCB-SCCCEETTTTEECCHHHHHHHHHHCTT
T ss_pred CCCcCCCCcCC-CCCcEEeccCEEEchhcchhhccCCCC
Confidence 56899999974 689998888999999998776665543
No 65
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=38.30 E-value=21 Score=23.13 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=17.3
Q ss_pred ccccCCcccccccccCCCCCcccchhHHHHHhhC
Q psy8832 97 SCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHN 130 (144)
Q Consensus 97 ~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~~ 130 (144)
.|..|.....++-. ......||+.|........
T Consensus 46 ~C~~Cs~~~~~l~~-~~~~~RVC~~C~~~l~~~~ 78 (90)
T 3t7l_A 46 FCGVCCNRKCKLQY-LEKEARVCVVCYETISKAQ 78 (90)
T ss_dssp ECGGGSCEEEEETT-TTEEEEECHHHHHHHHHHC
T ss_pred ECCcccCCeeecCC-CCCCCeECHHHHHHHHHHh
Confidence 45555555544421 1112567888877655543
No 66
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=37.95 E-value=10 Score=27.92 Aligned_cols=38 Identities=29% Similarity=0.652 Sum_probs=30.6
Q ss_pred CCcccccCCCCCCCeeeeCCCCCcccccccccccccCCC
Q psy8832 36 DIKECVNCAANSTPLWRRDGTGHHLCNACGLYNRINGVN 74 (144)
Q Consensus 36 ~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~~g~~ 74 (144)
.-..|..||+. -|.|-.-.-|-++|..|.-.++.-|.+
T Consensus 21 ~N~~CaDCga~-~P~WaS~nlGvflCi~CSGiHR~LG~h 58 (163)
T 3sub_A 21 SNNKCFDCGIS-NPDWVSVNHGIFLCINCSGVHRSLGVH 58 (163)
T ss_dssp GGGBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHTCTT
T ss_pred CCCccccCCCC-CCCeEEecCCeeEHHhhhHHhcCCCCC
Confidence 35689999985 699998888999999997766655543
No 67
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=36.51 E-value=9.5 Score=24.93 Aligned_cols=31 Identities=29% Similarity=0.563 Sum_probs=22.2
Q ss_pred CCcccccCCCCCCCeeeeCCCCCccccccccccc
Q psy8832 36 DIKECVNCAANSTPLWRRDGTGHHLCNACGLYNR 69 (144)
Q Consensus 36 ~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r 69 (144)
..-.|.+||. +...+...|...|..||.-+.
T Consensus 26 ~~y~Cp~CG~---~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 26 EDHACPNCGE---DRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp SCEECSSSCC---EEEEEEETTEEEETTTCCEEE
T ss_pred ccCcCCCCCC---cceeccCCCeEECCCCCCEec
Confidence 3557999995 344445588889999998443
No 68
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.37 E-value=16 Score=21.45 Aligned_cols=31 Identities=19% Similarity=0.471 Sum_probs=20.4
Q ss_pred CCCCCcccccCCCCCCCeeeeCCCCCcccccccc
Q psy8832 33 LNMDIKECVNCAANSTPLWRRDGTGHHLCNACGL 66 (144)
Q Consensus 33 ~~~~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgl 66 (144)
.....+.|..||+.. ++... .+...|..||+
T Consensus 15 v~~~~k~CP~CG~~~--fm~~~-~~R~~C~kCG~ 45 (50)
T 3j20_Y 15 VIRKNKFCPRCGPGV--FMADH-GDRWACGKCGY 45 (50)
T ss_dssp EECSSEECSSSCSSC--EEEEC-SSEEECSSSCC
T ss_pred EEEecccCCCCCCce--EEecC-CCeEECCCCCC
Confidence 344577899999743 33322 34578999987
No 69
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=35.60 E-value=26 Score=26.94 Aligned_cols=37 Identities=19% Similarity=0.458 Sum_probs=30.3
Q ss_pred CCCcccccCCcccccccccCCCCCcccchhHHHHHhhC
Q psy8832 93 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHN 130 (144)
Q Consensus 93 ~~~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~~ 130 (144)
..+..|..|+... |.|-.-+-|-.+|-.|.-.-+.-|
T Consensus 40 ~~n~~c~dc~~~~-p~w~s~~~g~~~c~~cs~~hr~lg 76 (301)
T 2b0o_E 40 PGNSQCCDCGAAD-PTWLSTNLGVLTCIQCSGVHRELG 76 (301)
T ss_dssp TTTTBCTTTCCBS-CCEEETTTTEEECHHHHHHHHHHC
T ss_pred CCCCcCCCCCCCC-CCeEEeecCeEEcHHHHHHHHhhC
Confidence 3467999999864 999999999999999977666655
No 70
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=35.18 E-value=12 Score=22.15 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=21.2
Q ss_pred CcccccCCCCCCC----eeeeCCCCC---cccccccccccc
Q psy8832 37 IKECVNCAANSTP----LWRRDGTGH---HLCNACGLYNRI 70 (144)
Q Consensus 37 ~~~C~~C~t~~tp----~wrr~~~g~---~lCnaCgly~r~ 70 (144)
...|..||-...- .||....+. +.|..||-.++.
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 4569999984433 244444443 588889876653
No 71
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=34.56 E-value=19 Score=21.08 Aligned_cols=35 Identities=23% Similarity=0.499 Sum_probs=22.7
Q ss_pred CCCcccccCCCCCCCeee---eC-CCCC---ccccccccccc
Q psy8832 35 MDIKECVNCAANSTPLWR---RD-GTGH---HLCNACGLYNR 69 (144)
Q Consensus 35 ~~~~~C~~C~t~~tp~wr---r~-~~g~---~lCnaCgly~r 69 (144)
.....|..||-.+.-.|. |+ +++. +.|..||-.++
T Consensus 7 t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred eCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 345579999987776664 22 3343 48888887654
No 72
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=34.38 E-value=23 Score=22.27 Aligned_cols=33 Identities=27% Similarity=0.371 Sum_probs=24.2
Q ss_pred CCcccccCCCCCCCeeeeCCCCCccccccccccccc
Q psy8832 36 DIKECVNCAANSTPLWRRDGTGHHLCNACGLYNRIN 71 (144)
Q Consensus 36 ~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~~ 71 (144)
....|..|+. ++--....|...|.+||+.|...
T Consensus 7 ~iL~CP~ck~---~L~~~~~~~~LiC~~cg~~YPI~ 39 (70)
T 2js4_A 7 DILVCPVCKG---RLEFQRAQAELVCNADRLAFPVR 39 (70)
T ss_dssp CCCBCTTTCC---BEEEETTTTEEEETTTTEEEEEE
T ss_pred hheECCCCCC---cCEEeCCCCEEEcCCCCceecCC
Confidence 4557888885 66544556788999999987754
No 73
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=32.97 E-value=18 Score=27.37 Aligned_cols=29 Identities=24% Similarity=0.540 Sum_probs=21.2
Q ss_pred CcccccCCCCCCCeeeeCCCCCccccccccc
Q psy8832 37 IKECVNCAANSTPLWRRDGTGHHLCNACGLY 67 (144)
Q Consensus 37 ~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly 67 (144)
...|..||.+.. +|-- .+|...|+.||.+
T Consensus 14 ~~~CP~Cg~~d~-~~~~-~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 14 HIPCDNCGSSDG-NSLF-SDGHTFCYVCEKW 42 (255)
T ss_dssp EECCSSSCCSSC-EEEE-TTSCEEETTTCCE
T ss_pred CCcCCCCCCCCC-ceEe-CCCCeecccCCCc
Confidence 446999998643 4433 4677899999975
No 74
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=32.56 E-value=21 Score=22.30 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=23.0
Q ss_pred CcccccCCCCCCCeeeeCCCCCccccccccccccc
Q psy8832 37 IKECVNCAANSTPLWRRDGTGHHLCNACGLYNRIN 71 (144)
Q Consensus 37 ~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~~ 71 (144)
...|..|+ +++--....|...|.+||+.|...
T Consensus 8 iL~CP~ck---~~L~~~~~~~~LiC~~cg~~YPI~ 39 (68)
T 2hf1_A 8 ILVCPLCK---GPLVFDKSKDELICKGDRLAFPIK 39 (68)
T ss_dssp ECBCTTTC---CBCEEETTTTEEEETTTTEEEEEE
T ss_pred heECCCCC---CcCeEeCCCCEEEcCCCCcEecCC
Confidence 34688887 465444556788999999987754
No 75
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=32.48 E-value=25 Score=21.95 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=24.0
Q ss_pred CCcccccCCCCCCCeeeeCCCCCccccccccccccc
Q psy8832 36 DIKECVNCAANSTPLWRRDGTGHHLCNACGLYNRIN 71 (144)
Q Consensus 36 ~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~~ 71 (144)
....|..|+ +++--....|...|.+||+.|...
T Consensus 7 ~iL~CP~ck---~~L~~~~~~~~LiC~~cg~~YPI~ 39 (68)
T 2jr6_A 7 DILVCPVTK---GRLEYHQDKQELWSRQAKLAYPIK 39 (68)
T ss_dssp CCCBCSSSC---CBCEEETTTTEEEETTTTEEEEEE
T ss_pred hheECCCCC---CcCeEeCCCCEEEcCCCCcEecCC
Confidence 456788888 465444556788999999987754
No 76
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=31.76 E-value=30 Score=21.91 Aligned_cols=34 Identities=24% Similarity=0.588 Sum_probs=20.7
Q ss_pred CCCCCcccccCCCCCCCeeeeC---CCCCcccccccc
Q psy8832 33 LNMDIKECVNCAANSTPLWRRD---GTGHHLCNACGL 66 (144)
Q Consensus 33 ~~~~~~~C~~C~t~~tp~wrr~---~~g~~lCnaCgl 66 (144)
.+.....|..|+..-+.+-|+- .=|..+|+.|-.
T Consensus 15 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred cCccCCcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 3445667888888776554432 235566666654
No 77
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=31.70 E-value=35 Score=22.72 Aligned_cols=31 Identities=26% Similarity=0.509 Sum_probs=20.8
Q ss_pred cccccCCcccccccccCCCCCcccchhHHHHHhhC
Q psy8832 96 VSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHN 130 (144)
Q Consensus 96 ~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~~ 130 (144)
..|.-|+...+-. -=|...|+||..+|++.-
T Consensus 4 ~~C~VCg~~a~g~----hyGv~sC~aCk~FFRR~v 34 (99)
T 1ynw_B 4 HICAICGDRSSGK----HYGVYSCEGCKGFFKRTV 34 (99)
T ss_dssp -CBTTTBSCCCBC----CTTSCBCSHHHHHHHHHH
T ss_pred CCCceeCCCCcce----eeCccchHHHHHHHHhhh
Confidence 4688888643322 235677999999999863
No 78
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=31.57 E-value=26 Score=21.85 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=24.0
Q ss_pred CCcccccCCCCCCCeeeeCCCCCccccccccccccc
Q psy8832 36 DIKECVNCAANSTPLWRRDGTGHHLCNACGLYNRIN 71 (144)
Q Consensus 36 ~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~~ 71 (144)
....|..|.. |+--....|...|.+||+.|...
T Consensus 9 eiL~CP~ck~---~L~~~~~~g~LvC~~c~~~YPI~ 41 (67)
T 2jny_A 9 EVLACPKDKG---PLRYLESEQLLVNERLNLAYRID 41 (67)
T ss_dssp CCCBCTTTCC---BCEEETTTTEEEETTTTEEEEEE
T ss_pred HHhCCCCCCC---cCeEeCCCCEEEcCCCCccccCC
Confidence 4567888885 66444556788999999977654
No 79
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.25 E-value=20 Score=21.85 Aligned_cols=12 Identities=17% Similarity=0.089 Sum_probs=6.5
Q ss_pred CCCccccccccc
Q psy8832 56 TGHHLCNACGLY 67 (144)
Q Consensus 56 ~g~~lCnaCgly 67 (144)
+|.++|..|+..
T Consensus 51 ~~~~yC~~C~~~ 62 (73)
T 1wig_A 51 GSSIWHPACRQA 62 (73)
T ss_dssp TTEEECTTHHHH
T ss_pred CCEEEChHHChH
Confidence 345566666543
No 80
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=30.84 E-value=21 Score=22.35 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=22.7
Q ss_pred CcccccCCCCCCCeeeeCCCCCccccccccccccc
Q psy8832 37 IKECVNCAANSTPLWRRDGTGHHLCNACGLYNRIN 71 (144)
Q Consensus 37 ~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~~ 71 (144)
...|..|+ +++--....|...|.+||+.|...
T Consensus 8 iL~CP~ck---~~L~~~~~~~~LiC~~cg~~YPI~ 39 (69)
T 2pk7_A 8 ILACPICK---GPLKLSADKTELISKGAGLAYPIR 39 (69)
T ss_dssp TCCCTTTC---CCCEECTTSSEEEETTTTEEEEEE
T ss_pred heeCCCCC---CcCeEeCCCCEEEcCCCCcEecCc
Confidence 45788888 455444456778999999987754
No 81
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=30.68 E-value=49 Score=24.63 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=14.6
Q ss_pred ccccCCcccccccccCCC-CCcccchhHHH
Q psy8832 97 SCANCSTTCTTLWRRNNN-GEPVCNACGLY 125 (144)
Q Consensus 97 ~C~nC~t~~t~~WR~~~~-g~~lCnaCgly 125 (144)
.|..|.....++=..+.. ...||+.|...
T Consensus 187 ~C~~Cs~~~~~~~~~~~~~~~RvC~~C~~~ 216 (220)
T 1dvp_A 187 FCGQCTAKQCPLPKYGIEKEVRVCDGCFAA 216 (220)
T ss_dssp ECSTTSCEEEEEGGGTEEEEEEECHHHHHH
T ss_pred EChHHhCCeeecCcCCCCCCCEeCHHHHHH
Confidence 455565554444222211 24578888653
No 82
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=30.59 E-value=9.1 Score=30.25 Aligned_cols=38 Identities=29% Similarity=0.540 Sum_probs=30.3
Q ss_pred CCCcccccCCCCCCCeeeeCCCCCcccccccccccccCC
Q psy8832 35 MDIKECVNCAANSTPLWRRDGTGHHLCNACGLYNRINGV 73 (144)
Q Consensus 35 ~~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~~g~ 73 (144)
.....|..||+ ..|.|-.-.-|-++|..|.-.++.-|.
T Consensus 35 ~~n~~c~dc~~-~~~~~~~~~~~~~~c~~c~~~hr~~~~ 72 (329)
T 3o47_A 35 DENNVCFECGA-FNPQWVSVTYGIWICLECSGRHRGLGV 72 (329)
T ss_dssp TTTTBCTTTCC-BSCCEEEGGGTEEECHHHHHHHHHHCT
T ss_pred CCCCcCCCCCC-CCCCeEEecCCEEEChhhhhhhcccCC
Confidence 35779999997 467999888899999999776665444
No 83
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=30.45 E-value=39 Score=25.49 Aligned_cols=13 Identities=23% Similarity=0.600 Sum_probs=7.9
Q ss_pred cccccCCCCCCCe
Q psy8832 38 KECVNCAANSTPL 50 (144)
Q Consensus 38 ~~C~~C~t~~tp~ 50 (144)
..|..|+..-+.+
T Consensus 165 ~~C~~C~~~F~~~ 177 (226)
T 3zyq_A 165 EECHRCRVQFGVM 177 (226)
T ss_dssp SBCTTTCCBCBTT
T ss_pred CCCcCcCCCCCcc
Confidence 4677777655543
No 84
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=30.28 E-value=27 Score=24.11 Aligned_cols=32 Identities=16% Similarity=0.473 Sum_probs=21.8
Q ss_pred CCcccccCCcccccccccCCCCCcccchhHHHHHhh
Q psy8832 94 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLH 129 (144)
Q Consensus 94 ~~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~ 129 (144)
....|.-|+...+-. -=|-..|+||..+|++.
T Consensus 7 ~~~~C~VCg~~a~g~----hyGv~sC~aCk~FFRR~ 38 (119)
T 2han_B 7 QEELCLVCGDRASGY----HYNALTCEGCKGFFRRS 38 (119)
T ss_dssp CSCBCTTTCSBCCEE----ETTEEECHHHHHHHHHH
T ss_pred CCCcCeEeCCcCCcc----eECchhHHhhHHhhhhh
Confidence 445799998643322 12456699999999976
No 85
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=30.24 E-value=19 Score=22.74 Aligned_cols=29 Identities=21% Similarity=0.403 Sum_probs=19.6
Q ss_pred CCCCcccccCCCCCCCeeeeCCCCCcccccccc
Q psy8832 34 NMDIKECVNCAANSTPLWRRDGTGHHLCNACGL 66 (144)
Q Consensus 34 ~~~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgl 66 (144)
+.-.-.|.+||...... ......|..||-
T Consensus 25 ~~v~Y~C~~CG~~~e~~----~~d~irCp~CG~ 53 (70)
T 1twf_L 25 ATLKYICAECSSKLSLS----RTDAVRCKDCGH 53 (70)
T ss_dssp CCCCEECSSSCCEECCC----TTSTTCCSSSCC
T ss_pred ceEEEECCCCCCcceeC----CCCCccCCCCCc
Confidence 34456899999875543 223468999987
No 86
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=29.85 E-value=33 Score=22.43 Aligned_cols=33 Identities=27% Similarity=0.688 Sum_probs=22.3
Q ss_pred CCcccccCCcccccccccCCCCCcccchhHHHHHhhC
Q psy8832 94 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHN 130 (144)
Q Consensus 94 ~~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~~ 130 (144)
....|.-|+...+-. -=|...|+||..+|++.-
T Consensus 6 ~~~~C~VCg~~a~g~----hyGv~sC~aCk~FFRR~v 38 (89)
T 2ebl_A 6 SGIECVVCGDKSSGK----HYGQFTCEGCKSFFKRSV 38 (89)
T ss_dssp SSCBCTTTCSBCCSE----ETTEECCHHHHHHHHHHH
T ss_pred CCCCCcEeCCCCcce----EeCchhhHHhhhhhheee
Confidence 445788998643322 124566999999999863
No 87
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=28.45 E-value=19 Score=29.39 Aligned_cols=33 Identities=27% Similarity=0.667 Sum_probs=26.7
Q ss_pred CCcccccCCCCCCCeeeeCCCCCccccccccccc
Q psy8832 36 DIKECVNCAANSTPLWRRDGTGHHLCNACGLYNR 69 (144)
Q Consensus 36 ~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r 69 (144)
....|..||+. -|.|-.-.-|-++|..|.-.++
T Consensus 33 ~N~~C~dC~~~-~p~w~s~~~g~~~C~~Csg~hr 65 (386)
T 3lju_X 33 GNARCADCGAP-DPDWASYTLGVFICLSCSGIHR 65 (386)
T ss_dssp GGSBCTTTCCB-SCCEEETTTTEEECHHHHHHHH
T ss_pred CCCcCccCCCC-CCCeEEecccEEEhhhhchHhh
Confidence 34579999986 7999988899999999965433
No 88
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=26.92 E-value=22 Score=28.55 Aligned_cols=34 Identities=26% Similarity=0.629 Sum_probs=27.9
Q ss_pred CCcccccCCCCCCCeeeeCCCCCcccccccccccc
Q psy8832 36 DIKECVNCAANSTPLWRRDGTGHHLCNACGLYNRI 70 (144)
Q Consensus 36 ~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~r~ 70 (144)
....|..||+. -|.|-.-.-|-++|..|.-.++.
T Consensus 44 ~n~~c~dc~~~-~p~w~s~~~g~~~c~~c~~~hr~ 77 (368)
T 3jue_A 44 GNAQCCDCREP-APEWASINLGVTLCIQCSGIHRS 77 (368)
T ss_dssp TTTBCTTTCCB-SCCEEETTTTEEECHHHHHHHHH
T ss_pred CcCcCCCCCCC-CCCeEEecCCeEEcHhHHHHHhc
Confidence 47789999984 69999889999999999654443
No 89
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=26.31 E-value=18 Score=24.86 Aligned_cols=31 Identities=16% Similarity=0.286 Sum_probs=21.0
Q ss_pred CcccccCCCCCCCeeeeCCCCCccccccccc
Q psy8832 37 IKECVNCAANSTPLWRRDGTGHHLCNACGLY 67 (144)
Q Consensus 37 ~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly 67 (144)
-+.|..||......+-...=+-.+|++|---
T Consensus 5 ~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 5 YVICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CEECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CCccccCCChhhHHHHHHhCCeeechhhccc
Confidence 4579999976554443344456799999753
No 90
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=24.88 E-value=39 Score=21.49 Aligned_cols=30 Identities=20% Similarity=0.496 Sum_probs=21.8
Q ss_pred CCcccccCCCCCCCeeeeCCCCCcccccccccc
Q psy8832 36 DIKECVNCAANSTPLWRRDGTGHHLCNACGLYN 68 (144)
Q Consensus 36 ~~~~C~~C~t~~tp~wrr~~~g~~lCnaCgly~ 68 (144)
..-.|..||.+. ..|...|-..|..|+.-.
T Consensus 25 ~ky~C~fCgk~~---vkR~a~GIW~C~~C~~~~ 54 (72)
T 3jyw_9 25 ARYDCSFCGKKT---VKRGAAGIWTCSCCKKTV 54 (72)
T ss_dssp SCBCCSSCCSSC---BSBCSSSCBCCSSSCCCC
T ss_pred cCccCCCCCCce---eEecCCCeEECCCCCCEE
Confidence 456799999553 445668888999998643
No 91
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=24.20 E-value=41 Score=22.37 Aligned_cols=31 Identities=26% Similarity=0.599 Sum_probs=21.8
Q ss_pred CcccccCCcccccccccCCCCCcccchhHHHHHhh
Q psy8832 95 GVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLH 129 (144)
Q Consensus 95 ~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~ 129 (144)
...|.-|+...+-. -=|...|+||..+|++.
T Consensus 4 ~~~C~VCg~~a~g~----hyGv~sC~aCk~FFRR~ 34 (98)
T 1lo1_A 4 KRLCLVCGDIASGY----HYGVASCEACKAFFKRT 34 (98)
T ss_dssp CCEETTTTEECSEE----SSSSEECHHHHHHHHHH
T ss_pred CCCCcEeCCCCcCe----eeCccchhhhhhhheee
Confidence 35788888644322 23567799999999986
No 92
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=23.79 E-value=23 Score=26.92 Aligned_cols=87 Identities=21% Similarity=0.307 Sum_probs=46.8
Q ss_pred CCCCcccccCCCC----CCCeeeeCCCC----CcccccccccccccCCCCCCccccchhhhhhcCCCCCCcccccCCccc
Q psy8832 34 NMDIKECVNCAAN----STPLWRRDGTG----HHLCNACGLYNRINGVNRPPVRTNQKKALQQTGNKRSGVSCANCSTTC 105 (144)
Q Consensus 34 ~~~~~~C~~C~t~----~tp~wrr~~~g----~~lCnaCgly~r~~g~~RP~~k~kkkka~~~s~~k~~~~~C~nC~t~~ 105 (144)
....+.|..||.. +...++.+++| ++.|.+|--..+.-+ ++.....+-.+...+......|.-|+...
T Consensus 72 ~~G~K~C~~Cg~~Kp~seF~rnkt~~DG~~~l~s~CkeC~~~lr~YG----IT~eey~~L~e~Qg~~~~~G~C~ICg~~~ 147 (200)
T 3gox_A 72 GYDKKICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNIDGVK----LSSTEKKKMDEIAPPKGSVFTCPICEKRS 147 (200)
T ss_dssp TSSEEECTTTCBEEEGGGSCEEEECTTSCEEECSSCHHHHHHHHCSC----CCHHHHHHHHTTCCCTTCEEECTTTCCEE
T ss_pred cCCCeECCCCCCCcchhhhcccccCCCCCcccCccChhhhhccCCcC----CCHHHHHHHHHHcccCCCCCcCcCCCCCC
Confidence 3457889999964 34455566778 579999965321111 11111111112222233447899998766
Q ss_pred cc------cc----ccCCCCCcccchhHH
Q psy8832 106 TT------LW----RRNNNGEPVCNACGL 124 (144)
Q Consensus 106 t~------~W----R~~~~g~~lCnaCgl 124 (144)
.. .. ..|.-...||..|-.
T Consensus 148 ~~~~~k~lvVDHDH~TG~VRGlLC~~CN~ 176 (200)
T 3gox_A 148 IVGVTANLVHDHNHDTGWGREWICDSCNT 176 (200)
T ss_dssp EBTTTBCEEEEECTTTCCEEEEEEHHHHH
T ss_pred CcCcccceeeecccCCCcEecccchhhcc
Confidence 52 11 112222678999965
No 93
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=23.11 E-value=21 Score=21.76 Aligned_cols=14 Identities=21% Similarity=0.629 Sum_probs=12.0
Q ss_pred ccccCCCCCCCeee
Q psy8832 39 ECVNCAANSTPLWR 52 (144)
Q Consensus 39 ~C~~C~t~~tp~wr 52 (144)
.|.||+..+|+-|.
T Consensus 15 ~CpnC~~~tt~~~~ 28 (59)
T 3lpe_B 15 ICPICHSPTSENWI 28 (59)
T ss_dssp BCTTTCCBEESCEE
T ss_pred CCCCCCCCccCCEe
Confidence 69999987788886
No 94
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=23.05 E-value=43 Score=21.57 Aligned_cols=31 Identities=26% Similarity=0.555 Sum_probs=21.3
Q ss_pred CcccccCCcccccccccCCCCCcccchhHHHHHhh
Q psy8832 95 GVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLH 129 (144)
Q Consensus 95 ~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~ 129 (144)
...|.-|+...+-. -=|...|+||..+|++.
T Consensus 4 ~~~C~VCg~~a~g~----hyGv~sC~aCk~FFRR~ 34 (84)
T 1hcq_A 4 TRYCAVCNDYASGY----HYGVWSCEGCKAFFKRS 34 (84)
T ss_dssp CCBCTTTCSBCCEE----ETTEEECHHHHHHHHHH
T ss_pred CCcCcEECCCCCCe----eeCccchHHhhhhhhhc
Confidence 34688888643322 12456799999999987
No 95
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=22.92 E-value=35 Score=22.07 Aligned_cols=31 Identities=19% Similarity=0.541 Sum_probs=20.0
Q ss_pred CcccccCCcccccccccCCCCCcccchhHHHHHhh
Q psy8832 95 GVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLH 129 (144)
Q Consensus 95 ~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~ 129 (144)
...|.-|+...+-. -=|...|+||..+|++.
T Consensus 4 ~~~C~VCg~~a~g~----hyGv~sC~aCk~FFRR~ 34 (86)
T 1dsz_A 4 YKPCFVCQDKSSGY----HYGVSACEGCKGFFRRS 34 (86)
T ss_dssp --CCTTTCSCCCSE----ETTEECCHHHHHHHHHH
T ss_pred CCCCcEECCCccce----eeCchhHHHHHHHHHHH
Confidence 34688888643322 12456799999999976
No 96
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=22.87 E-value=40 Score=23.21 Aligned_cols=33 Identities=21% Similarity=0.645 Sum_probs=19.8
Q ss_pred CCCCcccccCCCCCCCeeeeC---CCCCcccccccc
Q psy8832 34 NMDIKECVNCAANSTPLWRRD---GTGHHLCNACGL 66 (144)
Q Consensus 34 ~~~~~~C~~C~t~~tp~wrr~---~~g~~lCnaCgl 66 (144)
+.....|..|+..-+.+-|+- .=|..+|..|-.
T Consensus 66 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 66 DNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 445668889988766554432 235556666644
No 97
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=22.34 E-value=38 Score=21.99 Aligned_cols=12 Identities=17% Similarity=0.725 Sum_probs=7.7
Q ss_pred CCCcccccCCCC
Q psy8832 35 MDIKECVNCAAN 46 (144)
Q Consensus 35 ~~~~~C~~C~t~ 46 (144)
...-+|..||..
T Consensus 25 m~~y~C~vCGyv 36 (81)
T 2kn9_A 25 YKLFRCIQCGFE 36 (81)
T ss_dssp CCEEEETTTCCE
T ss_pred cceEEeCCCCEE
Confidence 445677777754
No 98
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=22.30 E-value=41 Score=22.56 Aligned_cols=30 Identities=20% Similarity=0.476 Sum_probs=20.0
Q ss_pred ccccCCcccccccccCCCCCcccchhHHHHHhhC
Q psy8832 97 SCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHN 130 (144)
Q Consensus 97 ~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~~ 130 (144)
.|.-|+...+-. -=|...|+||..+|+..-
T Consensus 3 ~C~VCgd~a~g~----hyGv~sC~aCk~FFRR~v 32 (103)
T 2nll_B 3 LCVVCGDKATGY----HYRCITCEGCKGFFRRTI 32 (103)
T ss_dssp BCTTTCSBCCSE----ETTEECCHHHHHHHHHHH
T ss_pred CCeEeCCcCcCe----ecCcccHHHhhhhheecc
Confidence 577787543222 124566999999999863
No 99
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=22.25 E-value=42 Score=20.25 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=28.7
Q ss_pred CCCCCccccc--CCCCCCCeeeeCCCC-Cccccccccc
Q psy8832 33 LNMDIKECVN--CAANSTPLWRRDGTG-HHLCNACGLY 67 (144)
Q Consensus 33 ~~~~~~~C~~--C~t~~tp~wrr~~~g-~~lCnaCgly 67 (144)
.+.....|.. |++=.-|.++-+..| ...||-|+..
T Consensus 5 ~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 5 SSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQR 42 (59)
T ss_dssp SCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCE
T ss_pred CCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCc
Confidence 4556678998 999999999987766 5799999874
No 100
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=22.19 E-value=41 Score=22.12 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=21.7
Q ss_pred CcccccCCcccccccccCCCCCcccchhHHHHHhh
Q psy8832 95 GVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLH 129 (144)
Q Consensus 95 ~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~ 129 (144)
...|.-|+...+-. -=|...|+||..+|++.
T Consensus 10 ~~~C~VCgd~a~g~----hyGv~sC~aCk~FFRR~ 40 (93)
T 2han_A 10 KHLCSICGDRASGK----HYGVYSCEGCKGFFKRT 40 (93)
T ss_dssp CCBCTTTCSBCCEE----ETTEEECHHHHHHHHHH
T ss_pred CCCCcEeCCCCcCe----ecCcchhHHHHHHHHhh
Confidence 45799998644322 23466799999999876
No 101
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=21.91 E-value=51 Score=20.33 Aligned_cols=25 Identities=36% Similarity=0.749 Sum_probs=15.5
Q ss_pred CCCcccccCCCCCCCeeeeCCCCCcccccc
Q psy8832 35 MDIKECVNCAANSTPLWRRDGTGHHLCNAC 64 (144)
Q Consensus 35 ~~~~~C~~C~t~~tp~wrr~~~g~~lCnaC 64 (144)
.....|.+|..|+.. ++.|+ +|.-|
T Consensus 7 ~d~~~C~iC~KTKFA----DG~Gh-~C~yC 31 (62)
T 2a20_A 7 GDAPTCGICHKTKFA----DGCGH-NCSYC 31 (62)
T ss_dssp SCCCCCSSSSCSCCC----SSCCE-EBTTT
T ss_pred CCcchhhhhccceec----cCCCc-ccccc
Confidence 345578888888776 55554 44443
No 102
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=21.80 E-value=25 Score=25.67 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=38.7
Q ss_pred CCCCcccccCCcccccccccCC--CCCccc-chhHHHHHhhCCCCccccccccc
Q psy8832 92 KRSGVSCANCSTTCTTLWRRNN--NGEPVC-NACGLYFKLHNVFTILFYNITKA 142 (144)
Q Consensus 92 k~~~~~C~nC~t~~t~~WR~~~--~g~~lC-naCglyy~~~~~~Rp~~l~~~~~ 142 (144)
.+....|.+|+..---+..-|+ .|..-| |...|.|...+...|-.|++-+.
T Consensus 96 ~RtEV~C~~Cg~HLGHVF~DGP~ptg~RyCiNS~sL~F~p~~~~~p~~~~~~~~ 149 (154)
T 3hcj_A 96 IRTEIVCARCDSHLGHVFPDGPPPTGERHCLNSVSLAFTEDGQPLPNPLQRAGA 149 (154)
T ss_dssp SCEEEEETTTCCEEEEEESCSCTTTTCEEEECGGGEEEEETTSBCCCTTCCSSG
T ss_pred eEEEEEeCCCCCccCCccCCCCCCCCCEeeeceeeEEeeeCCCCCCCccccCcc
Confidence 4556789999988777776554 355556 99999999888888888887653
No 103
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=21.57 E-value=36 Score=22.00 Aligned_cols=31 Identities=26% Similarity=0.521 Sum_probs=21.3
Q ss_pred CcccccCCcccccccccCCCCCcccchhHHHHHhh
Q psy8832 95 GVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLH 129 (144)
Q Consensus 95 ~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~ 129 (144)
...|.-|+...+-. -=|...|+||..+|++.
T Consensus 5 ~~~C~VCg~~a~g~----hyGv~sC~aCk~FFRR~ 35 (85)
T 1dsz_B 5 KHICAICGDRSSGK----HYGVYSCEGCKGFFKRT 35 (85)
T ss_dssp CEECTTTCCEESSE----ETTEECCHHHHHHHHHH
T ss_pred CCCCCEeCCCCCce----eeCccchHHHHHHHHHh
Confidence 35788888643322 13456799999999976
No 104
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=21.53 E-value=48 Score=20.43 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=19.6
Q ss_pred cccccCCcccccccccCCC-CCcccchhHHHHH
Q psy8832 96 VSCANCSTTCTTLWRRNNN-GEPVCNACGLYFK 127 (144)
Q Consensus 96 ~~C~nC~t~~t~~WR~~~~-g~~lCnaCglyy~ 127 (144)
..|..|.....++=..+.. ...||+.|...+.
T Consensus 36 v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~ 68 (73)
T 1vfy_A 36 VFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDYE 68 (73)
T ss_dssp EECGGGSCEEEEEGGGTEEEEEEECHHHHHHHH
T ss_pred EEcccccCCeEEcccCCCCCCCEECHHHHHHHH
Confidence 4678887766666443322 2567999876543
No 105
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=21.31 E-value=41 Score=22.82 Aligned_cols=31 Identities=19% Similarity=0.510 Sum_probs=20.2
Q ss_pred CcccccCCcccccccccCCCCCcccchhHHHHHhh
Q psy8832 95 GVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLH 129 (144)
Q Consensus 95 ~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~ 129 (144)
...|.-|+...+-. -=|-..|+||..+|++.
T Consensus 6 ~~~C~VCg~~a~g~----hyGv~sC~aCk~FFRR~ 36 (110)
T 1kb2_A 6 PRICGVCGDRATGF----HFNAMTCEGCKGFFRRS 36 (110)
T ss_dssp -CBCTTTCSBCCSE----ETTEECCHHHHHHHHHH
T ss_pred CCCCcEeCCCCCce----EeCchhHhhhhhhheee
Confidence 35688887643322 12456699999999876
No 106
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=20.55 E-value=45 Score=22.46 Aligned_cols=32 Identities=22% Similarity=0.616 Sum_probs=22.1
Q ss_pred CcccccCCcccccccccCCCCCcccchhHHHHHhhC
Q psy8832 95 GVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHN 130 (144)
Q Consensus 95 ~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~~ 130 (144)
...|.-|+...+-. -=|-..|+||..+|++.-
T Consensus 7 ~~~C~VCg~~a~g~----hyGv~sC~aCk~FFRR~v 38 (105)
T 1r4i_A 7 QKTCLICGDEASGA----HYGALTCGSCKVFFKRAA 38 (105)
T ss_dssp CCBCSSSCSBEEEE----ETTEEEEHHHHHHHHHHH
T ss_pred CCCCcEeCCCCCce----EeCCcchhhhhhhhceeE
Confidence 35788898644322 135667999999999873
No 107
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=20.50 E-value=71 Score=23.74 Aligned_cols=50 Identities=14% Similarity=0.259 Sum_probs=37.1
Q ss_pred EEEEeeeeeccCCCCCCccccccCCCCccCCCCCcccccCCCCCCCeeeeCC
Q psy8832 4 IVCVLIRHHVTDGPFQAYLTVIDWPQNMMLNMDIKECVNCAANSTPLWRRDG 55 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~C~~C~t~~tp~wrr~~ 55 (144)
|++-..+.....+||.+.+-..++.. ........|..||...|=..|-..
T Consensus 120 VI~~GL~~DF~~~~F~~~~~Ll~~Ad--~v~kl~aiC~~Cg~~A~~~~R~~~ 169 (195)
T 1w4r_A 120 VIVAALDGTFQRKPFGAILNLVPLAE--SVVKLTAVCMECFREAAYTKRLGT 169 (195)
T ss_dssp EEEEEESBCTTSSBCTTGGGGGGGCS--EEEECCEECTTTCSEECEEEESSC
T ss_pred EEEEecccccccccchhHHHHHHhcC--eEEEeeeEecccCCeeeeEEEEcC
Confidence 56667888999999999998877655 345566799999976665566543
No 108
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=20.18 E-value=40 Score=23.05 Aligned_cols=32 Identities=22% Similarity=0.508 Sum_probs=21.1
Q ss_pred CCcccccCCcccccccccCCCCCcccchhHHHHHhh
Q psy8832 94 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLH 129 (144)
Q Consensus 94 ~~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~ 129 (144)
....|.-|+...+-. -=|...|+||..+|++.
T Consensus 8 ~~~~C~VCgd~a~G~----HyGv~sC~aCk~FFRR~ 39 (113)
T 2a66_A 8 LEELCPVCGDKVSGY----HYGLLTCESCKGFFKRT 39 (113)
T ss_dssp --CBCTTTCCBEEEE----ETTEEEEHHHHHHHHHH
T ss_pred CCCCCcEeCCCCcce----eeCcccHHHHHHHHhhh
Confidence 345788898644322 23456799999999876
No 109
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=20.09 E-value=58 Score=26.06 Aligned_cols=37 Identities=19% Similarity=0.510 Sum_probs=30.7
Q ss_pred CCCcccccCCcccccccccCCCCCcccchhHHHHHhhC
Q psy8832 93 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHN 130 (144)
Q Consensus 93 ~~~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~~ 130 (144)
..+..|..|+.. -|.|-.-+-|-.+|-.|.-.-+.-|
T Consensus 43 ~~n~~c~dc~~~-~p~w~s~~~g~~~c~~c~~~hr~lg 79 (368)
T 3jue_A 43 DGNAQCCDCREP-APEWASINLGVTLCIQCSGIHRSLG 79 (368)
T ss_dssp TTTTBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHHC
T ss_pred CCcCcCCCCCCC-CCCeEEecCCeEEcHhHHHHHhccC
Confidence 346799999985 6999988899999999987667666
No 110
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=20.02 E-value=62 Score=24.36 Aligned_cols=37 Identities=22% Similarity=0.462 Sum_probs=30.5
Q ss_pred CCcccccCCcccccccccCCCCCcccchhHHHHHhhCC
Q psy8832 94 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHNV 131 (144)
Q Consensus 94 ~~~~C~nC~t~~t~~WR~~~~g~~lCnaCglyy~~~~~ 131 (144)
.+..|..|+... |.|-.-+-|-.+|-.|.-.-+..|+
T Consensus 16 ~n~~c~dc~~~~-p~w~s~~~g~~~c~~c~~~hr~lg~ 52 (278)
T 1dcq_A 16 GNDVCCDCGAPD-PTWLSTNLGILTCIECSGIHRELGV 52 (278)
T ss_dssp TTTBCTTTCCBS-CCEEETTTTEEECHHHHHHHHHHCT
T ss_pred CCCcCCCCCCCC-CCeEEecCCeEEcHHHHHHHhhcCC
Confidence 456899999874 6999888998999999777777663
Done!