RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8832
(144 letters)
>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1
{Chicken (Gallus gallus) [TaxId: 9031]}
Length = 66
Score = 63.8 bits (155), Expect = 3e-15
Identities = 27/40 (67%), Positives = 33/40 (82%)
Query: 92 KRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHNV 131
KR+G C+NC T+ TTLWRR+ G+PVCNACGLY+KLH V
Sbjct: 1 KRAGTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQV 40
Score = 59.6 bits (144), Expect = 1e-13
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 39 ECVNCAANSTPLWRRDGTGHHLCNACGLYNRINGVNRPPVRTNQKKALQQTGNKRS 94
C NC ++T LWRR G +CNACGLY +++ VNRP +K QT N++
Sbjct: 6 VCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVNRPL---TMRKDGIQTRNRKV 58
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 39
Score = 58.6 bits (142), Expect = 1e-13
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 95 GVSCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHNV 131
C NC T T LWRR+ G +CNACGLY K++
Sbjct: 2 ARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQ 38
Score = 58.2 bits (141), Expect = 2e-13
Identities = 27/37 (72%), Positives = 33/37 (89%)
Query: 38 KECVNCAANSTPLWRRDGTGHHLCNACGLYNRINGVN 74
+ECVNC A +TPLWRRD TGH+LCNACGLY+++NG N
Sbjct: 3 RECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 39
>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1
{Emericella nidulans [TaxId: 162425]}
Length = 42
Score = 57.1 bits (138), Expect = 6e-13
Identities = 22/35 (62%), Positives = 26/35 (74%)
Query: 97 SCANCSTTCTTLWRRNNNGEPVCNACGLYFKLHNV 131
+C NC T T LWRRN G+P+CNACGL+ KLH V
Sbjct: 2 TCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 36
Score = 56.4 bits (136), Expect = 1e-12
Identities = 21/37 (56%), Positives = 27/37 (72%)
Query: 40 CVNCAANSTPLWRRDGTGHHLCNACGLYNRINGVNRP 76
C NC +TPLWRR+ G LCNACGL+ +++GV RP
Sbjct: 3 CTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRP 39
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 25.6 bits (56), Expect = 0.71
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 96 VSCANCSTTCTTLWRRNNNGEPVCNACGL 124
V+C N L G+ +C CGL
Sbjct: 12 VTCPNHP--DAILVEDYRAGDMICPECGL 38
Score = 23.2 bits (50), Expect = 5.5
Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 2/33 (6%)
Query: 34 NMDIKECVNCAANSTPLWRRDGTGHHLCNACGL 66
+ C N L G +C CGL
Sbjct: 8 ALPRVTCPNH--PDAILVEDYRAGDMICPECGL 38
>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus
radiodurans [TaxId: 1299]}
Length = 58
Score = 24.2 bits (53), Expect = 2.4
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 8/32 (25%)
Query: 37 IKECVNCAANSTPLWRRDGTGHHLCNACGLYN 68
+ EC C HH+C CG Y+
Sbjct: 29 LTECPQCHGKKLS--------HHICPNCGYYD 52
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB,
N-terminal domain {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 50
Score = 23.6 bits (51), Expect = 2.7
Identities = 9/27 (33%), Positives = 9/27 (33%), Gaps = 2/27 (7%)
Query: 98 CANCSTTCTTLWRRNNNGEPVCNACGL 124
C C L GE VC CG
Sbjct: 8 CPACE--SAELIYDPERGEIVCAKCGY 32
>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus
thermophilus [TaxId: 274]}
Length = 59
Score = 23.4 bits (51), Expect = 3.6
Identities = 9/30 (30%), Positives = 10/30 (33%), Gaps = 8/30 (26%)
Query: 39 ECVNCAANSTPLWRRDGTGHHLCNACGLYN 68
C C A P H +C CG Y
Sbjct: 31 PCPECKAMKPP--------HTVCPECGYYA 52
>d1fgja_ a.138.1.3 (A:) Hydroxylamine oxidoreductase, HAO
{Nitrosomonas europaea [TaxId: 915]}
Length = 499
Score = 24.6 bits (52), Expect = 5.7
Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 8/82 (9%)
Query: 28 PQNMMLNMDIKECVNCAANSTPL----WRRDGTGHHLCNACGLYNRINGVNRPPVRTNQK 83
P + + K+CV C ++ TP+ W+R + + + + +
Sbjct: 67 PVSPKEVAERKDCVECHSDETPVWVRAWKRSTHANLDKIRNLKSDDPLYYKKGKLEEVEN 126
Query: 84 KALQQTGN----KRSGVSCANC 101
V C +C
Sbjct: 127 NLRSMGKLGEKETLKEVGCIDC 148
>d1qo8a1 a.138.1.3 (A:2-102) Flavocytochrome c3 (respiratory
fumarate reductase), N-terminal domain {Shewanella
frigidimarina [TaxId: 56812]}
Length = 101
Score = 23.7 bits (50), Expect = 6.3
Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 15/87 (17%)
Query: 36 DIKECVNCAANSTPLWRRDGTGHHLCNACGLYNRINGVNRPPVRTNQKKALQQTGNKRSG 95
D+ C +C A + + + C +C N K +
Sbjct: 10 DMGSCQSCHAKPIKVTDSETHENAQCKSCH--------GEYAELANDKLQFDPHNSHLGD 61
Query: 96 VSCANCSTTCTTLWRRNNNGEPVCNAC 122
++C +C + + CN C
Sbjct: 62 INCTSCHKG-------HEEPKFYCNEC 81
>d2fsqa1 d.61.1.4 (A:6-237) Putative phosphoesterase Atu0111
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 232
Score = 24.0 bits (52), Expect = 6.8
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 12 HVT--DGPFQAYLTVIDWPQNMMLNMDIKEC 40
H+T G ++ + WPQ + L+ I
Sbjct: 77 HMTVFQGVIESRRALPYWPQTLPLDTPIDAV 107
>d2bs2b1 a.1.2.1 (B:107-239) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 133
Score = 23.7 bits (50), Expect = 8.6
Identities = 5/80 (6%), Positives = 18/80 (22%), Gaps = 2/80 (2%)
Query: 28 PQNMMLNMDIKECVNCAA--NSTPLWRRDGTGHHLCNACGLYNRINGVNRPPVRTNQKKA 85
P+ ++ C+ C + + + + + +
Sbjct: 33 PEVAQEVFELDRCIECGCCIAACGTKIMREDFVGAAGLNRVVRFMIDPHDERTDEDYYEL 92
Query: 86 LQQTGNKRSGVSCANCSTTC 105
+ ++ C C
Sbjct: 93 IGDDDGVFGCMTLLACHDVC 112
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.137 0.466
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 564,290
Number of extensions: 24704
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 33
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.0 bits)