BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8836
(118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 26/52 (50%)
Query: 9 PGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFV 60
P ++ + A PG ++I G +G++ +W+ ++ + ++ D S V
Sbjct: 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTV 114
>pdb|3GAS|A Chain A, Crystal Structure Of Helicobacter Pylori Heme Oxygenase
Hugz In Complex With Heme
pdb|3GAS|B Chain B, Crystal Structure Of Helicobacter Pylori Heme Oxygenase
Hugz In Complex With Heme
pdb|3GAS|C Chain C, Crystal Structure Of Helicobacter Pylori Heme Oxygenase
Hugz In Complex With Heme
pdb|3GAS|D Chain D, Crystal Structure Of Helicobacter Pylori Heme Oxygenase
Hugz In Complex With Heme
pdb|3GAS|E Chain E, Crystal Structure Of Helicobacter Pylori Heme Oxygenase
Hugz In Complex With Heme
pdb|3GAS|F Chain F, Crystal Structure Of Helicobacter Pylori Heme Oxygenase
Hugz In Complex With Heme
Length = 259
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 68 SVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVT 107
SV+ T D K E +K+ GF CL LHP V
Sbjct: 77 SVEKTHDLKGVEEE---VKAFKEGFDSVCLATLHPNGHVV 113
>pdb|1G8K|A Chain A, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|C Chain C, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|E Chain E, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|G Chain G, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
Length = 825
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 16 AEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS 75
A QPG+P G S G +V +DR + N + +VS +S KG + +T
Sbjct: 609 AGQPGAPAIDSQGGSTGHLVTYDRLRKSGNNGVQLPVVSWDES---KGLVGTEMLYTEGK 665
Query: 76 KDKEPSKALLK 86
D + KA K
Sbjct: 666 FDTDDGKAHFK 676
>pdb|1G8J|A Chain A, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8J|C Chain C, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
Length = 825
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 16 AEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS 75
A QPG+P G S G +V +DR + N + +VS +S KG + +T
Sbjct: 609 AGQPGAPAIDSQGGSTGHLVTYDRLRKSGNNGVQLPVVSWDES---KGLVGTEMLYTEGK 665
Query: 76 KDKEPSKALLK 86
D + KA K
Sbjct: 666 FDTDDGKAHFK 676
>pdb|2WUQ|A Chain A, Crystal Structure Of Blab Protein From Streptomyces Cacaoi
pdb|2WUQ|B Chain B, Crystal Structure Of Blab Protein From Streptomyces Cacaoi
Length = 318
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 72 TGDSKDKEPSKA-------LLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG 116
TG S+ + P++ L SVS G L ++ PPA V +V EWG
Sbjct: 85 TGLSRFRHPARVAVDDLLYLSTSVSDGTASDALFEITPPAQVEQMV--REWG 134
>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
Length = 393
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 14 AIAEQPGSPNHIIVGYSKGLVVLWDRTTN 42
++ +P +PN +IVG G + ++D T N
Sbjct: 191 SVQFRPSNPNQLIVGERNGNIRIFDWTLN 219
>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 394
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 14 AIAEQPGSPNHIIVGYSKGLVVLWDRTTN 42
++ +P +PN +IVG G + ++D T N
Sbjct: 192 SVQFRPSNPNQLIVGERNGNIRIFDWTLN 220
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,831,405
Number of Sequences: 62578
Number of extensions: 127833
Number of successful extensions: 160
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 157
Number of HSP's gapped (non-prelim): 11
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)