BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8836
(118 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q08470|L2GL_DROPS Protein lethal(2) giant larvae OS=Drosophila pseudoobscura
pseudoobscura GN=l(2)gl PE=1 SV=3
Length = 1166
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 12/119 (10%)
Query: 3 DHYKLNPG-AVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQIS----TMNIVSDRD 57
D Y +P AV+ IA P + ++VG + G +V+ D T +Q S +MN+VSDRD
Sbjct: 502 DPYSDDPRLAVKKIAFCPKT-GQLVVGGTAGQIVIADFDTAAEDQSSLKYNSMNLVSDRD 560
Query: 58 SFVWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG 116
FVWKGH +L+V+ + P G T ++Q+ PPA++T + L WG
Sbjct: 561 GFVWKGHDQLNVRANLLEDNAVP------LTENGVNITGVLQVLPPASITCMALEANWG 613
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 14/76 (18%)
Query: 1 VPDHYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFV 60
VP YKLNPGA+E+I + P S N +++ Y++GL VLWD T+ + +++
Sbjct: 176 VPPTYKLNPGAIESIRQLPNSLNKLLIAYNRGLCVLWDMQTSAVER-----------AYI 224
Query: 61 WKGHAR---LSVKHTG 73
GH + LSV TG
Sbjct: 225 APGHGQSVGLSVNSTG 240
>sp|Q15334|L2GL1_HUMAN Lethal(2) giant larvae protein homolog 1 OS=Homo sapiens GN=LLGL1
PE=1 SV=3
Length = 1064
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 15/116 (12%)
Query: 3 DHYKLNPG-AVEAIAEQPGSPNHIIVGYSKGLVVLW--DRTTNTANQISTMNIVSDRDSF 59
D Y +P V+ +A + ++ G + ++VL D A ++ ++++ DR+ F
Sbjct: 507 DPYSDDPRLGVQKVALCKYTAQMVVAGTAGQVLVLELSDVPVEQAVSVAIIDLLQDREGF 566
Query: 60 VWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 115
WKGH RLS + TG P A GFQP LVQ PPAAVT++ LHTEW
Sbjct: 567 TWKGHERLSPR-TG----PLPWPA-------GFQPRVLVQCLPPAAVTAVTLHTEW 610
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 1 VPDHYKLNP--GAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDS 58
VPD Y+ G VE++ P I++GYS+GL+V+W++ + + I N +S
Sbjct: 185 VPDDYRCGKALGPVESLQGHLRDPTKILIGYSRGLLVIWNQASQCVDHIFLGN--QQLES 242
Query: 59 FVW 61
W
Sbjct: 243 LCW 245
>sp|Q5RCX2|L2GL2_PONAB Lethal(2) giant larvae protein homolog 2 OS=Pongo abelii GN=LLGL2
PE=2 SV=1
Length = 1019
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 23 NHIIVGYSKGLVVLWDRTTNTANQISTM---NIVSDRDSFVWKGHARLSVKHTGDSKDKE 79
++ V + G V++ + A Q +++ D++ + WKGH RL+ H+G +
Sbjct: 517 GYLAVAGTAGQVLVLELNDEAAEQAVEQVEADLLQDQEGYRWKGHERLAA-HSGPVR--- 572
Query: 80 PSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 115
PGFQP LVQ PPA VTSL LH+EW
Sbjct: 573 --------FEPGFQPFVLVQCQPPAVVTSLALHSEW 600
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 12 VEAIAEQPGSPNHIIVGYSKGLVVLWD 38
VEA+ E P PN I++GYS+GLVV+WD
Sbjct: 191 VEALQEHPRDPNQILIGYSRGLVVIWD 217
>sp|Q6P1M3|L2GL2_HUMAN Lethal(2) giant larvae protein homolog 2 OS=Homo sapiens GN=LLGL2
PE=1 SV=2
Length = 1020
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 23 NHIIVGYSKGLVVLWDRTTNTANQISTM---NIVSDRDSFVWKGHARLSVKHTGDSKDKE 79
++ V + G V++ + A Q +++ D++ + WKGH RL+ + +G +
Sbjct: 517 GYLAVAGTAGQVLVLELNDEAAEQAVEQVEADLLQDQEGYRWKGHERLAAR-SGPVR--- 572
Query: 80 PSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 115
PGFQP LVQ PPA VTSL LH+EW
Sbjct: 573 --------FEPGFQPFVLVQCQPPAVVTSLALHSEW 600
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 12 VEAIAEQPGSPNHIIVGYSKGLVVLWD 38
VEA+ E P PN I++GYS+GLVV+WD
Sbjct: 191 VEALQEHPRDPNQILIGYSRGLVVIWD 217
>sp|P08111|L2GL_DROME Lethal(2) giant larvae protein OS=Drosophila melanogaster GN=l(2)gl
PE=1 SV=2
Length = 1161
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 11/118 (9%)
Query: 3 DHYKLNPG-AVEAIAEQPGSPNHIIVGYSKGLVVLWDRT---TNTANQISTMNIVSDRDS 58
D Y +P AV+ IA P + +IVG + G +V+ D + + +MN+VSDRD
Sbjct: 502 DPYSDDPRLAVKKIAFCPKT-GQLIVGGTAGQIVIADFIDLPEKVSLKYISMNLVSDRDG 560
Query: 59 FVWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG 116
FVWKGH +L+V+ + P + G + ++Q+ PPA++T + L WG
Sbjct: 561 FVWKGHDQLNVRSNLLDGEAIP------TTERGVNISGVLQVLPPASITCMALEASWG 612
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 30/38 (78%)
Query: 1 VPDHYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWD 38
VP YKLNPGA+E+I + P SP+ ++V Y++GL VLWD
Sbjct: 176 VPPAYKLNPGAIESIRQLPNSPSKLLVAYNRGLCVLWD 213
>sp|Q7SZE3|L2GL2_DANRE Lethal(2) giant larvae protein homolog 2 OS=Danio rerio GN=llgl2
PE=1 SV=1
Length = 1020
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 15/95 (15%)
Query: 24 HIIVGYSKGLVVLWDRTTNTANQI---STMNIVSDRDSFVWKGHARLSVKHTGDSKDKEP 80
++ V + G +++ + A Q+ + ++++ ++ F WKG ARL V+ +EP
Sbjct: 516 YLTVAGTAGQILVLELNDEAAEQMVEATVVDLLQGQEGFRWKGQARLDVR-------EEP 568
Query: 81 SKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 115
PGFQP LVQ PPA VT++ LH+EW
Sbjct: 569 VL-----FPPGFQPFALVQCQPPAVVTAIALHSEW 598
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 1 VPDHY--KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWD 38
VP+ Y + N +VE + E P +P +++GYS+GL+VLWD
Sbjct: 178 VPEDYVGRRNLESVETLHENPLNPRQVLIGYSRGLMVLWD 217
>sp|Q8MKF0|L2GL1_BOVIN Lethal(2) giant larvae protein homolog 1 OS=Bos taurus GN=LLGL1
PE=2 SV=1
Length = 1036
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 15/95 (15%)
Query: 24 HIIVGYSKGLVVLWDRTTNTANQ---ISTMNIVSDRDSFVWKGHARLSVKHTGDSKDKEP 80
++V + G V++ + + A ++ ++++ DR+ F WKGH RL+ HTG
Sbjct: 527 QMVVAGTAGQVLVLELSEVPAEHAVSVANVDLLQDREGFTWKGHERLN-PHTG------- 578
Query: 81 SKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 115
L GFQP L+Q PPAAVT++ LH EW
Sbjct: 579 ----LLPWPAGFQPRMLIQCLPPAAVTAVTLHAEW 609
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 1 VPDHYKLNP--GAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDS 58
VPD Y+ G VE++ P+ I++GYS+GL+V+W + T + + N +S
Sbjct: 184 VPDDYRCGKALGPVESLQGHLQDPSKILIGYSRGLLVIWSQATQSVEHVFLGN--QQLES 241
Query: 59 FVW-KGHARLSVKHTGDS 75
W +G + + H+ S
Sbjct: 242 LCWGRGGSNIISSHSDGS 259
>sp|Q80Y17|L2GL1_MOUSE Lethal(2) giant larvae protein homolog 1 OS=Mus musculus GN=Llgl1
PE=1 SV=1
Length = 1036
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 15/95 (15%)
Query: 24 HIIVGYSKGLVVLWDRTTNTANQ---ISTMNIVSDRDSFVWKGHARLSVKHTGDSKDKEP 80
++V + G V++ + + A ++ ++++ DR+ F WKGH RL+ HTG
Sbjct: 527 QMVVAGTAGQVLVLELSEVPAEHAVSVANVDLLQDREGFTWKGHERLN-PHTG------- 578
Query: 81 SKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 115
L GFQP L+Q PPAAVT++ LH EW
Sbjct: 579 ----LLPWPAGFQPRMLIQCLPPAAVTAVTLHAEW 609
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 1 VPDHYKLNP--GAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDS 58
VPD Y+ G VE++ P+ I++GYS+GL+V+W + T + + + N +S
Sbjct: 184 VPDDYRCGKALGPVESLQGHLQDPSKILIGYSRGLLVIWSQATQSVDNVFLGN--QQLES 241
Query: 59 FVW 61
W
Sbjct: 242 LCW 244
>sp|Q8K4K5|L2GL1_RAT Lethal(2) giant larvae protein homolog 1 OS=Rattus norvegicus
GN=Llgl1 PE=1 SV=1
Length = 1036
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 12/69 (17%)
Query: 47 ISTMNIVSDRDSFVWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAV 106
+++++++ DR+ F WKGH RLS HTG P A GFQP L+Q PPAAV
Sbjct: 553 VASVDLLQDREGFTWKGHERLS-PHTG----PLPWPA-------GFQPRVLIQCLPPAAV 600
Query: 107 TSLVLHTEW 115
T++ LH EW
Sbjct: 601 TAVALHAEW 609
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 1 VPDHYKLNP--GAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDS 58
VPD Y+ G VE++ P+ I++GYS+GL+V+W + T + + N +S
Sbjct: 184 VPDDYRCGKALGPVESLQGHLQDPSKILIGYSRGLLVIWSQATQSVEHVFLGN--QQLES 241
Query: 59 FVW-KGHARLSVKHTGDS 75
W +G + + H+ S
Sbjct: 242 LCWGRGGSNIISSHSDGS 259
>sp|Q3TJ91|L2GL2_MOUSE Lethal(2) giant larvae protein homolog 2 OS=Mus musculus GN=Llgl2
PE=2 SV=2
Length = 1027
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 36 LWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPT 95
L D A + +++ D++ + WKGH RL+ + P ++ GFQP
Sbjct: 533 LNDEAAEHAVEQVEADLLQDQEGYRWKGHERLAAR---------PGPVCFEA---GFQPF 580
Query: 96 CLVQLHPPAAVTSLVLHTEW 115
LVQ PPA VTSL LH+EW
Sbjct: 581 VLVQCQPPAVVTSLALHSEW 600
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 12 VEAIAEQPGSPNHIIVGYSKGLVVLWD 38
VEA+ E P PN I++GYS+GLVV+WD
Sbjct: 191 VEALQEHPRDPNQILIGYSRGLVVIWD 217
>sp|A0AUS0|WSDU1_DANRE WD repeat, SAM and U-box domain-containing protein 1 OS=Danio rerio
GN=wdsub1 PE=2 SV=1
Length = 487
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 11/61 (18%)
Query: 5 YKLNPGAVEAIAEQPG---------SPN--HIIVGYSKGLVVLWDRTTNTANQISTMNIV 53
+ ++ G +EA+ E PG SP+ H++ G S G + LWD T+ T + +N
Sbjct: 81 WSMDTGEIEAVLEHPGRSPVRVCAFSPDSSHLVSGGSDGSIALWDFTSRTLRRTGVVNDT 140
Query: 54 S 54
S
Sbjct: 141 S 141
>sp|Q8K400|STXB5_MOUSE Syntaxin-binding protein 5 OS=Mus musculus GN=Stxbp5 PE=1 SV=3
Length = 1152
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTAN 45
K +PG V I++ P +++G+ G VVLWD + A+
Sbjct: 193 KAHPGPVVHISDNPMDEGKLLIGFESGTVVLWDLKSKKAD 232
>sp|A5CSZ7|SYP_CLAM3 Proline--tRNA ligase OS=Clavibacter michiganensis subsp.
michiganensis (strain NCPPB 382) GN=proS PE=3 SV=1
Length = 590
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 3 DHYKLNPGAVEAIAEQPGSPNHIIVGYS--KGLVVLWDRTTNTANQISTMNIV 53
D K++PG AE G P +IVG G+ LWDR TN ++ ++V
Sbjct: 531 DRPKVSPGVKFGDAELIGVPTIVIVGRGAVDGMAELWDRRTNERTPVALADVV 583
>sp|Q9WU70|STXB5_RAT Syntaxin-binding protein 5 OS=Rattus norvegicus GN=Stxbp5 PE=1 SV=1
Length = 1152
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTAN 45
K +PG V I++ P +++G+ G VVLWD + A+
Sbjct: 193 KSHPGPVVHISDNPMDEGKLLIGFESGTVVLWDLKSKKAD 232
>sp|Q5T5C0|STXB5_HUMAN Syntaxin-binding protein 5 OS=Homo sapiens GN=STXBP5 PE=1 SV=1
Length = 1151
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTAN 45
K +PG V I++ P +++G+ G VVLWD + A+
Sbjct: 192 KSHPGPVVHISDNPMDEGKLLIGFESGTVVLWDLKSKKAD 231
>sp|Q5DQR4|STB5L_MOUSE Syntaxin-binding protein 5-like OS=Mus musculus GN=Stxbp5l PE=1
SV=1
Length = 1185
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTAN 45
K +PG V +++ P +++GY G VV WD + A
Sbjct: 204 KTHPGPVVHLSDSPRDEGKLLIGYENGTVVFWDLKSKRAE 243
>sp|Q9Y2K9|STB5L_HUMAN Syntaxin-binding protein 5-like OS=Homo sapiens GN=STXBP5L PE=2
SV=2
Length = 1186
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTA 44
K +PG V +++ P +++GY G VV WD + A
Sbjct: 205 KTHPGPVVHLSDSPRDEGKLLIGYENGTVVFWDLKSKRA 243
>sp|B0RDZ1|SYP_CLAMS Proline--tRNA ligase OS=Clavibacter michiganensis subsp.
sepedonicus (strain ATCC 33113 / JCM 9667) GN=proS PE=3
SV=1
Length = 590
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 3 DHYKLNPGAVEAIAEQPGSPNHIIVGYS--KGLVVLWDRTTNTANQISTMNI 52
D K++PG AE G P +IVG G+ LWDR TN ++ ++
Sbjct: 531 DRPKVSPGVKFGDAELIGVPTVVIVGRGAVDGMAELWDRRTNERTPVALADV 582
>sp|Q5SQE2|STB5L_DANRE Syntaxin-binding protein 5-like OS=Danio rerio GN=stxbp5l PE=3 SV=1
Length = 1159
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTAN 45
K +PG V +++ P +++G+ G +V+WD A+
Sbjct: 206 KTHPGPVVHLSDSPKDEGKLLIGFESGTIVMWDLRAKRAD 245
>sp|Q2J6Y5|COAD_FRASC Phosphopantetheine adenylyltransferase OS=Frankia sp. (strain CcI3)
GN=coaD PE=3 SV=1
Length = 162
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 13 EAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRD 57
EA+ + P +P++++V S GL+V + R+ + + + VSD D
Sbjct: 56 EALRDHPMAPSNVLVDASHGLIVDFCRSRGIQSIVKGLRAVSDFD 100
>sp|Q6A7L9|SYP_PROAC Proline--tRNA ligase OS=Propionibacterium acnes (strain KPA171202 /
DSM 16379) GN=proS PE=3 SV=1
Length = 585
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 3 DHYKLNPGAVEAIAEQPGSPNHIIV--GYSKGLVVLWDRTTNTANQISTMNIV 53
D K +PG A +E G P ++V G GLV + DR+T Q+S V
Sbjct: 524 DDRKASPGVKFADSEILGMPTSVVVGRGLKDGLVEVRDRSTGENRQVSVAEAV 576
>sp|Q0RDM7|COAD_FRAAA Phosphopantetheine adenylyltransferase OS=Frankia alni (strain
ACN14a) GN=coaD PE=3 SV=1
Length = 162
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 13 EAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRD 57
EA+ P +P++++V S GLVV + R + + + VSD D
Sbjct: 56 EAVRNHPMAPSNVVVDASHGLVVDFCRARGIQSIVKGLRAVSDFD 100
>sp|B1WTK3|ASSY_CYAA5 Argininosuccinate synthase OS=Cyanothece sp. (strain ATCC 51142)
GN=argG PE=3 SV=1
Length = 400
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 13 EAIAEQPGSPNHIIVGYSKGL-VVLWDRTTNTANQISTMNIV 53
+AIA+ P +P ++ +G+ KGL V L +T + IS +N V
Sbjct: 208 KAIADTPDTPEYVEIGFEKGLPVSLNGQTLDPVTLISQLNDV 249
>sp|Q5U4F6|WDR34_MOUSE WD repeat-containing protein 34 OS=Mus musculus GN=Wdr34 PE=2 SV=2
Length = 535
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 9 PGAVEAIAEQPGSPNHIIVGYSKGLVVLWD 38
P AV +A P P+HI G G V++WD
Sbjct: 216 PSAVMCLAFHPTQPSHIAGGLYSGEVLVWD 245
>sp|Q8BL74|TF3C2_MOUSE General transcription factor 3C polypeptide 2 OS=Mus musculus
GN=Gtf3c2 PE=1 SV=2
Length = 907
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 10 GAVEAIAEQPGSPNH-IIVGYSKGLVVLWDRTTNTANQ 46
G ++A P P+H + GY G+VV W+ TN+ Q
Sbjct: 551 GQCLSLAWMPTRPHHHLAAGYYNGMVVFWNLPTNSPLQ 588
>sp|Q8WUA4|TF3C2_HUMAN General transcription factor 3C polypeptide 2 OS=Homo sapiens
GN=GTF3C2 PE=1 SV=2
Length = 911
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 10 GAVEAIAEQPGSP-NHIIVGYSKGLVVLWDRTTNTANQ 46
G ++A P P H+ GY G+VV W+ TN+ Q
Sbjct: 555 GQCLSLAWMPTRPHQHLAAGYYNGMVVFWNLPTNSPLQ 592
>sp|Q5RDC3|TF3C2_PONAB General transcription factor 3C polypeptide 2 OS=Pongo abelii
GN=GTF3C2 PE=2 SV=1
Length = 911
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 10 GAVEAIAEQPGSP-NHIIVGYSKGLVVLWDRTTNTANQ 46
G ++A P P H+ GY G+VV W+ TN+ Q
Sbjct: 555 GQCLSLAWMPTRPHQHLAAGYYNGMVVFWNLPTNSPLQ 592
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,478,551
Number of Sequences: 539616
Number of extensions: 1618208
Number of successful extensions: 2785
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2733
Number of HSP's gapped (non-prelim): 51
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)