RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8836
         (118 letters)



>gnl|CDD|153122 cd02431, Ferritin_CCC1_C, CCC1-related domain of ferritin.
          Ferritin_CCC1_like_C: The proteins of this family
          contain two domains. This is the C-terminal domain that
          is closely related to the CCC1, a vacuole transmembrane
          protein functioning as an iron and manganese
          transporter. The N-terminal domain is similar to
          ferritin-like diiron-carboxylate proteins, which are
          involved in a variety of iron ion related functions,
          such as iron storage and regulation, mono-oxygenation,
          and reactive radical production. This family may be
          unique to certain bacteria and archaea. .
          Length = 149

 Score = 26.1 bits (58), Expect = 3.4
 Identities = 25/85 (29%), Positives = 30/85 (35%), Gaps = 23/85 (27%)

Query: 5  YKLNPGAVEAIAEQPG----SPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFV 60
            LN   VE      G      N I+VG S GL+V        A  +S M I        
Sbjct: 6  LGLNDALVEITGALAGLTGAINNTILVGLS-GLIV------GIAAALS-MAI-------- 49

Query: 61 WKGHARLSVKHTGDSKDKEPSKALL 85
              A LS K     K+  P K+ L
Sbjct: 50 ---GAYLSTKSESGVKESNPVKSAL 71


>gnl|CDD|221074 pfam11312, DUF3115, Protein of unknown function (DUF3115).  This
           eukaryotic family of proteins has no known function.
          Length = 284

 Score = 25.3 bits (56), Expect = 8.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 7   LNPGAVEAIAEQPGSPNHIIVGYSK 31
             PG +  + +  GS +HI VG  K
Sbjct: 202 CKPGTLLLVVDSAGSYSHITVGEEK 226


>gnl|CDD|220809 pfam10561, UPF0565, Uncharacterized protein family UPF0565.  This
           family of proteins has no known function.
          Length = 295

 Score = 25.5 bits (56), Expect = 8.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 15  IAEQPGSPNHIIVGYSKGLVVL 36
           IA     P  +++G+SKG VVL
Sbjct: 182 IALNIIKPKLVLIGFSKGCVVL 203


>gnl|CDD|238952 cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine
           nucleotide alpha hydrolases superfamily.Adeninosine
           nucleotide alpha hydrolases superfamily  includes N type
           ATP PPases and ATP sulphurylases. It forms a
           apha/beta/apha fold which  binds to Adenosine group.
           This subfamily   of proteins is predicted to  bind ATP.
           This domainhas  a strongly conserved motif SGGKD at the
           N terminus.
          Length = 194

 Score = 25.3 bits (56), Expect = 9.1
 Identities = 6/21 (28%), Positives = 11/21 (52%)

Query: 83  ALLKSVSPGFQPTCLVQLHPP 103
           AL +++  G +   L+ L P 
Sbjct: 15  ALYRALEEGHEVVALLNLTPE 35


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.314    0.131    0.403 

Gapped
Lambda     K      H
   0.267   0.0753    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,716,943
Number of extensions: 449582
Number of successful extensions: 257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 8
Length of query: 118
Length of database: 10,937,602
Length adjustment: 81
Effective length of query: 37
Effective length of database: 7,344,928
Effective search space: 271762336
Effective search space used: 271762336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.1 bits)