RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8836
(118 letters)
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis
complex; 2.40A {Saccharomyces cerevisiae}
Length = 902
Score = 42.9 bits (100), Expect = 5e-06
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 7/92 (7%)
Query: 25 IIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSKDKEPSKAL 84
+ V G VVL+ N + D + + + D +D+ P+
Sbjct: 503 LAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG-- 560
Query: 85 LKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG 116
V GF P+ V + +++ ++ G
Sbjct: 561 ---VRQGFMPSTAVHAN-KGKTSAIN-NSNIG 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.10
Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 11/67 (16%)
Query: 52 IVSD--RDSFVWKGHA-RLSVKHTGDSKD-KEPSKALLKSVSPGFQPTCLVQL--HPPAA 105
I D +++ + ++ V T D D + S ++ + + C+++L
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD-----CIIRLPVKWETT 493
Query: 106 VTSLVLH 112
H
Sbjct: 494 TQFKATH 500
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor,
phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila
melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A*
3gfc_A 3cfs_B 3cfv_B
Length = 430
Score = 29.3 bits (66), Expect = 0.24
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 9 PGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGH 64
G V P + I V+++D T + + + D +GH
Sbjct: 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPD---LRLRGH 180
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha
isoform; holoenzyme, PR55, WD repeat, hydrolase, iron,
manganese binding, methylation, phosphoprotein, protein
phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Length = 447
Score = 26.3 bits (57), Expect = 2.7
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 2 PDHYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWD 38
P + + + A P S N + SKG + L D
Sbjct: 219 PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCD 255
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.4 bits (58), Expect = 2.8
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 7/28 (25%)
Query: 19 PGSPNHIIVG----Y--SK-GLVVLWDR 39
P SPNH G Y SK L L++R
Sbjct: 626 PMSPNHGTFGGDGMYSESKLSLETLFNR 653
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 4.0
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 7/33 (21%)
Query: 77 DKEPSKAL---LKSVSPGFQPTCLVQLHPPAAV 106
+K+ K L LK + P ++ A +
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK----ATM 46
>3if8_B Hzwilch, protein zwilch homolog; incomplete beta-barrel,
alternative splicing, cell cycle, CE division,
kinetochore, mitosis, polymorphism; 2.55A {Homo sapiens}
Length = 257
Score = 25.9 bits (56), Expect = 4.1
Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Query: 3 DHYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWD-RTTNTANQISTMNIVSDRDSFVW 61
+YK NP + I + P P + Y W + +I T+ +SD
Sbjct: 163 KYYKQNPLDEQHIFQLPVRPTAVKNLYQSEKPQKWRVEIYSGQKKIKTVWQLSDSSPIDH 222
Query: 62 KGHARLSVKHTGDSKDKEP 80
+ + E
Sbjct: 223 LNFHKPDFSELTLNGSLEE 241
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX,
D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 401
Score = 25.7 bits (57), Expect = 4.5
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 23 NHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDR-DSFVWKGHARLSVKHTGDSKDK 78
+ + VG GLV ++D + T ++ TM R W H LS +G S+
Sbjct: 147 SFLSVGLGNGLVDIYDVESQT--KLRTMAGHQARVGCLSWNRH-VLS---SG-SRSG 196
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 7.5
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 28/90 (31%)
Query: 12 VEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKH 71
+ I + P+ + Y + DR N + N V + L ++
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQR----DRLYNDNQVFAKYN--------VSRLQPYLKLR- 141
Query: 72 TGDSKDKEPSKALLKSVSPGFQPTCLVQLH 101
+ALL+ +P V +
Sbjct: 142 ----------QALLE-----LRPAKNVLID 156
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.403
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,730,501
Number of extensions: 83006
Number of successful extensions: 179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 15
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.3 bits)