RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8836
         (118 letters)



>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 470

 Score = 30.4 bits (68), Expect = 0.044
 Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 1/61 (1%)

Query: 59  FVWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSL-VLHTEWGE 117
             ++   R     TG          +  +V PG Q           AV     +  E+ E
Sbjct: 253 IFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKE 312

Query: 118 Y 118
           Y
Sbjct: 313 Y 313


>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific
          cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId:
          203496]}
          Length = 427

 Score = 26.3 bits (56), Expect = 1.2
 Identities = 7/39 (17%), Positives = 14/39 (35%)

Query: 10 GAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQIS 48
          G +  I   P + + +      G    WD  T+    ++
Sbjct: 12 GYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLN 50



 Score = 24.0 bits (50), Expect = 7.6
 Identities = 5/30 (16%), Positives = 12/30 (40%)

Query: 12  VEAIAEQPGSPNHIIVGYSKGLVVLWDRTT 41
           + A+   P +P H++ G    +      + 
Sbjct: 394 MSAVLIDPFNPEHLMYGTGATIWATDTLSR 423


>d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli
           [TaxId: 562]}
          Length = 327

 Score = 24.6 bits (54), Expect = 3.1
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 32  GLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSKDKEPSKALLKSVSP 90
           G +++W+     A ++S+M I  D D+       +L++    D  + E  +ALL+   P
Sbjct: 231 GDILVWNPVLEDAFELSSMGIRVDADTLK----HQLALTGDEDRLELEWHQALLRGEMP 285


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.131    0.403 

Gapped
Lambda     K      H
   0.267   0.0379    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 416,254
Number of extensions: 15073
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 4
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.8 bits)