BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8838
         (319 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A1CIK0|ACRB_ASPCL Probable ubiquitination network signaling protein acrB
           OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
           DSM 816 / NCTC 3887 / NRRL 1) GN=acrB PE=3 SV=1
          Length = 1018

 Score = 37.0 bits (84), Expect = 0.18,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 31/147 (21%)

Query: 177 SIIEDPVIPSQAPEKHAIVM---IIRRRRKM--KKHKLKKLRIRMKFEWAKIRQR----- 226
           S++  P  PS  P      +   I+    K+  K+ +L+K +   K   +KIR+      
Sbjct: 584 SLVSPPPQPSYRPSSPTTTLKNSIVNAEAKLNEKRSRLRKAKNDHKLIISKIRKELDNYN 643

Query: 227 --------REMKKEKAFQLEMSTKVKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESF 278
                      +K+++ QLE + +  E     A   +E +L         +S +N+PE  
Sbjct: 644 HRLHSGTDENRQKQRSLQLERNIRQTE----EATALLEGQL---------DSLENIPEEE 690

Query: 279 IKEWTERKERHRNEKQAKESRKKALHS 305
           ++EW+++K ++  E Q   S K+ L S
Sbjct: 691 LREWSDQKAKYDQELQLLNSAKEELVS 717


>sp|Q3ANQ3|MNME_CHLCH tRNA modification GTPase MnmE OS=Chlorobium chlorochromatii (strain
           CaD3) GN=mnmE PE=3 SV=1
          Length = 473

 Score = 33.9 bits (76), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 237 LEMSTKVKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTERKERHRNEKQAK 296
           ++   ++ E   F+   ++  ++ LL AE + E      ES  +    + +  R  +Q +
Sbjct: 111 IDAGCRLAEPGEFTRRAFLNGRIDLLQAEAIGEMIHARSESAFRTAVTQMQ-GRLSRQLE 169

Query: 297 ESRKKALHSIYVKDWGVDFSK 317
           E R+K LHS  + +  +DFS+
Sbjct: 170 EMREKLLHSCALLELELDFSE 190


>sp|A1CW63|ACRB_NEOFI Probable ubiquitination network signaling protein acrB
           OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
           FGSC A1164 / NRRL 181) GN=acrB PE=3 SV=1
          Length = 1019

 Score = 31.6 bits (70), Expect = 7.7,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 17/111 (15%)

Query: 199 RRRRKMKKHKLKKLRIRMKFEWAKIR----QRREMKKEKAFQLEMSTKVKEGERFSAEQY 254
           R R+    HKL   +IR + +    R         +K+++ QLE + +  E     A   
Sbjct: 621 RLRKAKNDHKLVISKIRKELDNYNHRLHSGTDENRQKQRSLQLERNIRQTE----EATAL 676

Query: 255 VENKLQLLHAEQLAESWKNVPESFIKEWTERKERHRNEKQAKESRKKALHS 305
           +E++L         ++ +NVP+  +++W+++K ++ +E     S K+ L S
Sbjct: 677 LEDQL---------DNLENVPDEELRKWSDQKAKYEHELGLLNSAKEELAS 718


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.131    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,798,529
Number of Sequences: 539616
Number of extensions: 4477617
Number of successful extensions: 17111
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 224
Number of HSP's that attempted gapping in prelim test: 16663
Number of HSP's gapped (non-prelim): 589
length of query: 319
length of database: 191,569,459
effective HSP length: 117
effective length of query: 202
effective length of database: 128,434,387
effective search space: 25943746174
effective search space used: 25943746174
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)