Query psy8838
Match_columns 319
No_of_seqs 206 out of 1243
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 20:26:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0022 AcoB Pyruvate/2-oxoglu 100.0 7.2E-49 1.6E-53 372.5 -1.4 210 29-263 1-236 (324)
2 KOG0524|consensus 100.0 1.1E-37 2.4E-42 294.7 -3.6 214 27-266 32-275 (359)
3 KOG0525|consensus 100.0 2.8E-32 6.1E-37 256.1 5.1 201 21-246 32-258 (362)
4 PRK11892 pyruvate dehydrogenas 99.9 6.5E-27 1.4E-31 231.3 -4.6 199 27-251 139-364 (464)
5 CHL00144 odpB pyruvate dehydro 99.9 3.2E-26 6.9E-31 216.4 -5.2 226 28-286 2-253 (327)
6 PLN02683 pyruvate dehydrogenas 99.9 8.2E-25 1.8E-29 209.4 -0.5 227 28-286 25-280 (356)
7 PRK09212 pyruvate dehydrogenas 99.9 2.9E-25 6.2E-30 209.4 -5.5 227 27-286 1-253 (327)
8 PTZ00182 3-methyl-2-oxobutanat 99.9 4E-24 8.6E-29 204.6 -4.5 228 26-285 31-284 (355)
9 TIGR00239 2oxo_dh_E1 2-oxoglut 99.9 3.8E-22 8.3E-27 211.0 7.6 156 29-209 585-781 (929)
10 PRK09404 sucA 2-oxoglutarate d 99.8 6.5E-21 1.4E-25 201.7 7.6 193 28-248 582-827 (924)
11 cd07036 TPP_PYR_E1-PDHc-beta_l 99.8 3.8E-20 8.3E-25 160.9 4.3 136 34-194 1-155 (167)
12 PF02779 Transket_pyr: Transke 99.7 2.6E-18 5.6E-23 147.9 0.7 153 28-207 1-177 (178)
13 cd07033 TPP_PYR_DXS_TK_like Py 99.6 3.2E-15 6.9E-20 126.8 6.1 129 35-195 2-145 (156)
14 TIGR00204 dxs 1-deoxy-D-xylulo 99.6 4.7E-17 1E-21 165.4 -6.2 218 29-285 309-546 (617)
15 PLN02582 1-deoxy-D-xylulose-5- 99.5 1.6E-16 3.5E-21 164.0 -6.8 230 16-284 341-593 (677)
16 PRK05444 1-deoxy-D-xylulose-5- 99.5 9.9E-16 2.1E-20 153.9 -1.3 188 30-250 279-486 (580)
17 PLN02234 1-deoxy-D-xylulose-5- 99.5 9E-16 2E-20 157.8 -2.4 204 15-251 341-568 (641)
18 PRK12315 1-deoxy-D-xylulose-5- 99.5 1.4E-15 3.1E-20 153.6 -2.8 215 29-283 277-510 (581)
19 PLN02225 1-deoxy-D-xylulose-5- 99.4 2.5E-14 5.4E-19 148.6 -0.6 230 18-285 369-618 (701)
20 PRK12571 1-deoxy-D-xylulose-5- 99.4 2.9E-14 6.3E-19 145.9 -3.4 190 30-251 319-528 (641)
21 smart00861 Transket_pyr Transk 99.3 8.3E-12 1.8E-16 105.7 7.4 129 32-194 2-153 (168)
22 PF08213 DUF1713: Mitochondria 99.0 3.4E-10 7.4E-15 78.0 3.1 33 192-224 1-33 (34)
23 PRK05899 transketolase; Review 98.9 1.4E-09 3.1E-14 110.5 6.5 203 28-270 317-553 (624)
24 COG3958 Transketolase, C-termi 98.1 2.4E-07 5.2E-12 89.4 -2.2 205 29-269 6-234 (312)
25 COG1154 Dxs Deoxyxylulose-5-ph 96.2 0.019 4.2E-07 60.5 8.9 222 18-285 303-552 (627)
26 TIGR00232 tktlase_bact transke 95.8 0.019 4E-07 60.1 6.6 218 28-285 347-594 (653)
27 PRK12753 transketolase; Review 95.8 0.032 6.9E-07 58.7 8.1 189 29-251 354-573 (663)
28 PRK12754 transketolase; Review 95.2 0.066 1.4E-06 56.6 7.9 221 29-286 354-604 (663)
29 PTZ00089 transketolase; Provis 94.9 0.085 1.9E-06 55.4 7.8 187 29-249 354-570 (661)
30 cd06586 TPP_enzyme_PYR Pyrimid 94.0 0.13 2.8E-06 42.0 5.5 91 39-163 2-97 (154)
31 PLN02790 transketolase 93.5 0.25 5.4E-06 51.9 7.8 190 30-251 344-564 (654)
32 PRK09405 aceE pyruvate dehydro 88.3 1.2 2.6E-05 49.2 6.9 186 28-251 493-751 (891)
33 KOG0523|consensus 84.6 1.4 3E-05 47.0 4.9 207 30-280 320-551 (632)
34 PRK13012 2-oxoacid dehydrogena 73.3 8.5 0.00018 42.8 6.7 126 28-184 501-674 (896)
35 TIGR03186 AKGDH_not_PDH alpha- 68.9 17 0.00037 40.6 7.7 188 28-252 488-749 (889)
36 COG3041 Uncharacterized protei 47.4 24 0.00052 29.6 3.4 40 233-273 8-47 (91)
37 KOG0451|consensus 41.3 41 0.00089 36.8 4.8 103 27-133 561-676 (913)
38 PF15581 Imm35: Immunity prote 38.3 19 0.00042 30.2 1.5 21 267-287 39-59 (93)
39 PRK05261 putative phosphoketol 30.9 25 0.00054 38.8 1.4 60 36-102 396-474 (785)
40 PF02218 HS1_rep: Repeat in HS 28.1 22 0.00048 25.5 0.3 15 56-70 2-16 (37)
41 COG2805 PilT Tfp pilus assembl 28.0 48 0.001 33.6 2.6 18 37-54 188-206 (353)
42 PF08700 Vps51: Vps51/Vps67; 25.9 2E+02 0.0044 21.8 5.3 19 246-264 3-21 (87)
43 PRK15322 invasion protein OrgB 25.1 70 0.0015 30.5 3.0 44 248-291 160-205 (210)
44 cd00491 4Oxalocrotonate_Tautom 23.0 72 0.0016 22.3 2.1 26 29-54 16-44 (58)
45 PF02009 Rifin_STEVOR: Rifin/s 22.5 53 0.0012 32.3 1.8 16 198-213 280-297 (299)
46 PHA02739 hypothetical protein; 22.5 76 0.0017 27.6 2.6 26 265-290 5-30 (116)
No 1
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=7.2e-49 Score=372.48 Aligned_cols=210 Identities=15% Similarity=0.156 Sum_probs=192.5
Q ss_pred cccHHHHHHHHHHHHHHhCCCeEE-ee---ecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cCCc
Q psy8838 29 QLTINFPLGSPVWALIADNDSTAI-EE---HFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LGLT 102 (319)
Q Consensus 29 ~lt~~~Ai~~al~~~m~~d~~v~i-GE---~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~Glr 102 (319)
++|+.+|||+||+++|++|++|++ || .+||+|++|+||+++||++||+ ||||+|++|+|+|+|| .|||
T Consensus 1 ~~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~------DTPiaE~gi~G~avGaA~~Glr 74 (324)
T COG0022 1 QMTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVI------DTPIAESGIAGIAVGAALTGLR 74 (324)
T ss_pred CccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCcccee------cCccchhhhHHHHHHHHHcCCc
Confidence 478999999999999999999999 99 8999999999999999999999 9999999999999999 8999
Q ss_pred ccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhh----hccCCCCccceEEEccCCCccccc--cccccc---
Q psy8838 103 VLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSV----VLDNPVFNKNVKIDIPLMPFYIEK--IDKLNE--- 173 (319)
Q Consensus 103 ~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~----y~~~g~f~~PvvIr~P~GP~Iie~--p~q~~E--- 173 (319)
|| +|+||.||+++++||++|+. |||||+|++|+|||+|+|+++... |||+.|
T Consensus 75 -----Pi--------------vEiqf~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~~~~~HSqs~ea~f 135 (324)
T COG0022 75 -----PI--------------VEIQFADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIGGGAQHSQSLEALF 135 (324)
T ss_pred -----ce--------------EEEEecchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCCchhhccCCHHHHH
Confidence 99 99999999999999999974 999999999999999999999887 888877
Q ss_pred cCCC---cccCCCC-CCCcchhhhhH----HHHHhhhhhhhhhhHHHh---hhhHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy8838 174 RNNS---IIEDPVI-PSQAPEKHAIV----MIIRRRRKMKKHKLKKLR---IRMKFEWAKIRQRREMKKEKAFQLEMSTK 242 (319)
Q Consensus 174 ~~lP---vv~pp~~-da~~~~~~a~~----Vl~IRRKKMkKHK~rKlr---kR~kF~~aKVrr~R~~kke~~Fq~~L~~~ 242 (319)
.+.| |+.|+++ |+++++++|++ ||++++|++|++.+.... ..-+++.|+++|+++|.+...|+..++.+
T Consensus 136 ~h~PGlKVV~PStpyDAKGLL~aAIrd~dPViflE~k~lY~~~~~eVP~~~Y~iPlGkA~i~reG~DvTivtyg~mv~~a 215 (324)
T COG0022 136 AHIPGLKVVMPSTPYDAKGLLKAAIRDPDPVIFLEHKRLYRSFKGEVPEEDYTIPLGKAKIVREGSDVTIVTYGAMVHTA 215 (324)
T ss_pred hcCCCceEEecCChHHHHHHHHHHhcCCCCEEEEecHHHhcccccCCCCCCccccccceeeEecCCceEEEEechHHHHH
Confidence 8888 8999999 99999999999 999999999996436665 66788999999999999999999999999
Q ss_pred HHhcccCChhhHHHHHHHHhc
Q psy8838 243 VKEGERFSAEQYVENKLQLLH 263 (319)
Q Consensus 243 lkeAeaf~ae~YV~~~l~~a~ 263 (319)
+++||....+-+=.|.|+.-.
T Consensus 216 l~AAe~l~~~Gis~EVIDLRT 236 (324)
T COG0022 216 LEAAEELEKEGISAEVIDLRT 236 (324)
T ss_pred HHHHHHHhhcCCCeEEEeccc
Confidence 999998766655444444433
No 2
>KOG0524|consensus
Probab=100.00 E-value=1.1e-37 Score=294.71 Aligned_cols=214 Identities=14% Similarity=0.188 Sum_probs=189.2
Q ss_pred cccccHHHHHHHHHHHHHHhCCCeEE-ee---ecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cC
Q psy8838 27 SEQLTINFPLGSPVWALIADNDSTAI-EE---HFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LG 100 (319)
Q Consensus 27 ~~~lt~~~Ai~~al~~~m~~d~~v~i-GE---~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~G 100 (319)
..+||+.+|||+||++||.+||+||+ || ++||.|++|+||+|+||+.||+ ||||+|.+|+|+++|| +|
T Consensus 32 ~~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~------DTPItE~gFtG~avGAA~~G 105 (359)
T KOG0524|consen 32 AKEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVL------DTPITEMGFTGIAVGAAMAG 105 (359)
T ss_pred ceeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceee------cCcchhcccchhhHhHHHhC
Confidence 45799999999999999999999999 99 8999999999999999999999 9999999999999999 99
Q ss_pred CcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhh----hccCCCCccceEEEccCCCc--cccccccccc-
Q psy8838 101 LTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSV----VLDNPVFNKNVKIDIPLMPF--YIEKIDKLNE- 173 (319)
Q Consensus 101 lr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~----y~~~g~f~~PvvIr~P~GP~--Iie~p~q~~E- 173 (319)
|| || ||+|+++|++.++||++|+. |||+|++++|+|+|-|.|.. +..-|+|-.+
T Consensus 106 Lr-----Pi--------------~efMtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPnG~~~gv~AqHSQ~f~~ 166 (359)
T KOG0524|consen 106 LR-----PI--------------CEFMTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPNGAAAGVAAQHSQDFAS 166 (359)
T ss_pred cc-----hh--------------hhhhcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCCCcccchhhhhhhhhHH
Confidence 99 99 99999999999999999964 99999999999999999855 5555888433
Q ss_pred --cCCC---cccCCCC-CCCcchhhhhH----HHHHhhhhhhhhhhHHHh-------hhhHHHHHHHHHhhhHHHHHHHH
Q psy8838 174 --RNNS---IIEDPVI-PSQAPEKHAIV----MIIRRRRKMKKHKLKKLR-------IRMKFEWAKIRQRREMKKEKAFQ 236 (319)
Q Consensus 174 --~~lP---vv~pp~~-da~~~~~~a~~----Vl~IRRKKMkKHK~rKlr-------kR~kF~~aKVrr~R~~kke~~Fq 236 (319)
-+.| |+.|-++ |++++++.||| |++.+.--||--+. +.. .--+++.||+.|.+++.+...|-
T Consensus 167 wy~siPGlkvvapysaedakGLlKaAIRd~NPVV~lEnelLYg~~f-~i~~E~ls~~fv~p~gkAkier~G~~iTivt~S 245 (359)
T KOG0524|consen 167 WYGSIPGLKVVAPYSAEDAKGLLKAAIRDENPVVFLENELLYGLSF-EIPEEALSKDFVLPLGKAKIEREGTHITIVTYS 245 (359)
T ss_pred HhccCCCceEeccCChhhhhhHHHHhccCCCCeEEEechhhcCCCc-cCChhhcCcceeeeccceeeeecCCceEEEEec
Confidence 6666 8999998 99999999999 99999999987763 222 23467899999999999999999
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHhcccc
Q psy8838 237 LEMSTKVKEGERFSAEQYVENKLQLLHAEQ 266 (319)
Q Consensus 237 ~~L~~~lkeAeaf~ae~YV~~~l~~a~~~~ 266 (319)
..+..+|++|+.+.++-|=.|.|++-.-+|
T Consensus 246 r~v~~~leAA~~L~~~Gvs~EVInlrSirP 275 (359)
T KOG0524|consen 246 RMVGHCLEAAETLVAKGVSAEVINLRSIRP 275 (359)
T ss_pred hhHHHHHHHHHHHHhcCCCceeEeeeccCc
Confidence 999999999999888877766666544444
No 3
>KOG0525|consensus
Probab=99.97 E-value=2.8e-32 Score=256.15 Aligned_cols=201 Identities=11% Similarity=0.143 Sum_probs=180.5
Q ss_pred cccccccccccHHHHHHHHHHHHHHhCCCeEE-ee--ecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhc
Q psy8838 21 GAEIIKSEQLTINFPLGSPVWALIADNDSTAI-EE--HFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQS 97 (319)
Q Consensus 21 ~~~~~~~~~lt~~~Ai~~al~~~m~~d~~v~i-GE--~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avG 97 (319)
-.++.....||+.+++|+||+.+|+.||+.++ || .|||+|+||.||.++||.+||| |||+.|++|+|+++|
T Consensus 32 ~~e~ge~~~mnl~qsvn~al~ial~tdp~a~vfgedv~fggvfrct~gl~~kfgk~rvf------ntplceqgivgfgig 105 (362)
T KOG0525|consen 32 TLEAGEKKKMNLYQSVNQALHIALETDPRAVVFGEDVAFGGVFRCTTGLAEKFGKDRVF------NTPLCEQGIVGFGIG 105 (362)
T ss_pred cccccccccchHHHHHHHHHHHHhhcCCceEEeccccccceEEEeecchHHHhCccccc------cCchhhcccceechh
Confidence 34555667899999999999999999999999 99 8999999999999999999999 999999999999999
Q ss_pred c--cCCcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhh----hccCCCCcc-ceEEEccCCCccccc--c
Q psy8838 98 A--LGLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSV----VLDNPVFNK-NVKIDIPLMPFYIEK--I 168 (319)
Q Consensus 98 a--~Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~----y~~~g~f~~-PvvIr~P~GP~Iie~--p 168 (319)
. +|-| .| +||||+||++|++||++|.+ |+||.+|+| -++||.|+|.-=+|. |
T Consensus 106 ~aa~g~~-----ai--------------aeiqfadyifpafdqivneaakfryrsgnqfncg~ltir~p~gavghg~~yh 166 (362)
T KOG0525|consen 106 LAAMGAT-----AI--------------AEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGAVGHGALYH 166 (362)
T ss_pred hhhcccc-----eE--------------EEEeeccccchhHHHHHHHHHhheeccCCccccCceEEeccccccccccccc
Confidence 8 8999 99 99999999999999999964 999999998 478999999887887 8
Q ss_pred ccccc---cCCC---cccCCCC-CCCcchhhhhH----HHHHhhhhhhhhhhHHHh---hhhHHHHHHHHHhhhHHHHHH
Q psy8838 169 DKLNE---RNNS---IIEDPVI-PSQAPEKHAIV----MIIRRRRKMKKHKLKKLR---IRMKFEWAKIRQRREMKKEKA 234 (319)
Q Consensus 169 ~q~~E---~~lP---vv~pp~~-da~~~~~~a~~----Vl~IRRKKMkKHK~rKlr---kR~kF~~aKVrr~R~~kke~~ 234 (319)
+||-| .+.| |+.|-.+ .+++++++||+ +++.++|=+|+.--.... +--++..|-|-|++.|.+.+.
T Consensus 167 sqspeaff~h~pgikvviprsp~qakglllscirdpnp~iffepk~lyr~a~edvp~~dy~iplsqaevireg~ditlv~ 246 (362)
T KOG0525|consen 167 SQSPEAFFCHVPGIKVVIPRSPRQAKGLLLSCIRDPNPCIFFEPKILYRQAVEDVPEGDYMIPLSQAEVIREGSDITLVA 246 (362)
T ss_pred cCCchhheecCCCceEEecCCcchhhceeeeeccCCCceEEechHHHHHHhhhhCCCCCccccccHHHHhhcCCceEEEE
Confidence 88877 7778 6667666 88899999999 999999999998755555 566889999999999999999
Q ss_pred HHHHHHHHHHhc
Q psy8838 235 FQLEMSTKVKEG 246 (319)
Q Consensus 235 Fq~~L~~~lkeA 246 (319)
++..++..+++|
T Consensus 247 wgtqvh~i~e~a 258 (362)
T KOG0525|consen 247 WGTQVHVIMEQA 258 (362)
T ss_pred cchhhHHHHHHH
Confidence 999998777665
No 4
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.91 E-value=6.5e-27 Score=231.27 Aligned_cols=199 Identities=14% Similarity=0.176 Sum_probs=166.7
Q ss_pred cccccHHHHHHHHHHHHHHhCCCeEE-ee---ecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cC
Q psy8838 27 SEQLTINFPLGSPVWALIADNDSTAI-EE---HFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LG 100 (319)
Q Consensus 27 ~~~lt~~~Ai~~al~~~m~~d~~v~i-GE---~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~G 100 (319)
|.++++.+|++++|.++|++||++++ || .+||.|++|+||.++||++|++ ||||+|++++|+|.|+ .|
T Consensus 139 ~~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~i------d~gIaEq~~vg~AaGlA~~G 212 (464)
T PRK11892 139 MVTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVI------DTPITEHGFAGIGVGAAFAG 212 (464)
T ss_pred ccchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCcccee------ecCccHHHHHHHHHHHHhCC
Confidence 45678999999999999999999999 88 6899999999999999999999 9999999999999999 89
Q ss_pred CcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhh----hhccCCCCccceEEEccCCCccccccccccc---
Q psy8838 101 LTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTS----VVLDNPVFNKNVKIDIPLMPFYIEKIDKLNE--- 173 (319)
Q Consensus 101 lr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~----~y~~~g~f~~PvvIr~P~GP~Iie~p~q~~E--- 173 (319)
+| || |++|+.+|+..|+||+.|+ .||+||..++||||+.|.|+....-+.|+.+
T Consensus 213 ~r-----Pi--------------v~~~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~hhs~~d~a 273 (464)
T PRK11892 213 LK-----PI--------------VEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAAQHSQDYAA 273 (464)
T ss_pred CE-----EE--------------EEEehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCCccccCHHH
Confidence 99 99 9999999999999999875 4899999999999999998763322233333
Q ss_pred --cCCC---cccCCCC-CCCcchhhhhH----HHHHhhhhhhhhhhHHHh----hhhHHHHHHHHHhhhHHHHHHHHHHH
Q psy8838 174 --RNNS---IIEDPVI-PSQAPEKHAIV----MIIRRRRKMKKHKLKKLR----IRMKFEWAKIRQRREMKKEKAFQLEM 239 (319)
Q Consensus 174 --~~lP---vv~pp~~-da~~~~~~a~~----Vl~IRRKKMkKHK~rKlr----kR~kF~~aKVrr~R~~kke~~Fq~~L 239 (319)
.++| |+.|.+. +.++++..|++ |++++++.++..+ .... ..-+++.+++.++++|.+..+|+..+
T Consensus 274 ~~~~iPgl~V~~P~d~~d~~~ll~~ai~~~~Pv~ile~~~ry~~~-~~vp~~~~~~~~~Gka~v~r~G~DvtIva~G~~v 352 (464)
T PRK11892 274 WYSHIPGLKVVAPYSAADAKGLLKAAIRDPNPVIFLENEILYGQS-FDVPKLDDFVLPIGKARIHREGKDVTIVSFSIGM 352 (464)
T ss_pred HHhhCCCCEEEEeCCHHHHHHHHHHHhhCCCcEEEEechhhcCCC-CCCCCcCCccccCceEEEEEcCCCEEEEEccHHH
Confidence 7777 7888887 88888888886 5665666566543 1111 12256788899999999999999999
Q ss_pred HHHHHhcccCCh
Q psy8838 240 STKVKEGERFSA 251 (319)
Q Consensus 240 ~~~lkeAeaf~a 251 (319)
..++++|+.+..
T Consensus 353 ~~Al~Aa~~L~~ 364 (464)
T PRK11892 353 TYALKAAEELAK 364 (464)
T ss_pred HHHHHHHHHHHh
Confidence 999999987644
No 5
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=99.90 E-value=3.2e-26 Score=216.40 Aligned_cols=226 Identities=15% Similarity=0.155 Sum_probs=178.5
Q ss_pred ccccHHHHHHHHHHHHHHhCCCeEE-ee---ecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cCC
Q psy8838 28 EQLTINFPLGSPVWALIADNDSTAI-EE---HFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LGL 101 (319)
Q Consensus 28 ~~lt~~~Ai~~al~~~m~~d~~v~i-GE---~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~Gl 101 (319)
.++++.+|++++|.+++++||++++ |+ ..||+|+.+.+|.++||++|++ |+||+|+.++|+|.|+ .|+
T Consensus 2 ~~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~------n~gIaEq~~vg~AaGlA~~G~ 75 (327)
T CHL00144 2 SEVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVL------DTPIAENSFTGMAIGAAMTGL 75 (327)
T ss_pred CcchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEe------eccccHHHHHHHHHHHHHCCC
Confidence 4579999999999999999999999 99 3488899999999999999999 9999999999999999 899
Q ss_pred cccCCCCcccccccccccccceeeEeccCCchhhhhHHHhh----hhccCCCCccceEEEccCCCc--cccccccccc--
Q psy8838 102 TVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTS----VVLDNPVFNKNVKIDIPLMPF--YIEKIDKLNE-- 173 (319)
Q Consensus 102 r~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~----~y~~~g~f~~PvvIr~P~GP~--Iie~p~q~~E-- 173 (319)
+ || |+.++.+|...|+||+.+. .|++||++++|++++.|.+.+ .++.|+|+.|
T Consensus 76 ~-----pv--------------v~~~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~~G~tHs~~~ea~ 136 (327)
T CHL00144 76 R-----PI--------------VEGMNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQRLESY 136 (327)
T ss_pred E-----EE--------------EEeehhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCCCCCccccccHHHH
Confidence 9 99 9999999999999999775 488999999999999996544 3455887657
Q ss_pred -cCCC---cccCCCC-CCCcchhhhhH----HHHHhhhhhhhhhhHHHh---hhhHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy8838 174 -RNNS---IIEDPVI-PSQAPEKHAIV----MIIRRRRKMKKHKLKKLR---IRMKFEWAKIRQRREMKKEKAFQLEMST 241 (319)
Q Consensus 174 -~~lP---vv~pp~~-da~~~~~~a~~----Vl~IRRKKMkKHK~rKlr---kR~kF~~aKVrr~R~~kke~~Fq~~L~~ 241 (319)
..+| |+.|.+. +..+.+.+|++ ++.+++|.+++.+ .... ..-+++.+.+.+++.+-+..+++..+..
T Consensus 137 ~~~iPgl~V~~Psd~~d~~~~l~~a~~~~~Pv~ire~~~l~~~~-~~v~~~~~~~~~Gk~~v~~~G~ditiia~G~~v~~ 215 (327)
T CHL00144 137 FQSVPGLQIVACSTPYNAKGLLKSAIRSNNPVIFFEHVLLYNLK-EEIPDNEYLLPLEKAEVVRPGNDITILTYSRMRHH 215 (327)
T ss_pred HhcCCCCEEEEeCCHHHHHHHHHHHHhCCCcEEEEEcHHhcCCC-CCCCCCCccccCCeeEEEEcCCCEEEEEccHHHHH
Confidence 7788 6777776 77777777776 5555677777643 2221 2336778888999999999999999999
Q ss_pred HHHhcccCChhhHHHHHHHHhccccccccccCCcHHHHHHHHHHH
Q psy8838 242 KVKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTERK 286 (319)
Q Consensus 242 ~lkeAeaf~ae~YV~~~l~~a~~~~~p~~w~~lp~~~ik~~~~~~ 286 (319)
++++|+.+..+-+=-+.++ +++-+-|+.+.|.+.+.+-
T Consensus 216 al~Aa~~L~~~Gi~~~VId-------~~~ikPlD~~~i~~~~~~t 253 (327)
T CHL00144 216 VLQAVKVLVEKGYDPEIID-------LISLKPLDLGTISKSVKKT 253 (327)
T ss_pred HHHHHHHHHhcCCCEEEEe-------cCcCCCCCHHHHHHHHHhh
Confidence 9999998643321111222 2233336677676665443
No 6
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=99.89 E-value=8.2e-25 Score=209.36 Aligned_cols=227 Identities=14% Similarity=0.129 Sum_probs=175.8
Q ss_pred ccccHHHHHHHHHHHHHHhCCCeEE-ee---ecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cCC
Q psy8838 28 EQLTINFPLGSPVWALIADNDSTAI-EE---HFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LGL 101 (319)
Q Consensus 28 ~~lt~~~Ai~~al~~~m~~d~~v~i-GE---~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~Gl 101 (319)
..+++.+|++++|.++|++||++++ |+ .+||+|++|+||.++||++|++ |+||+|+.++|+|.|+ .|+
T Consensus 25 ~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~------d~GIAEq~~vg~AaGlA~~G~ 98 (356)
T PLN02683 25 KEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVL------DTPITEAGFTGIGVGAAYAGL 98 (356)
T ss_pred cccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEE------ECchhHHHHHHHHHHHHHCCC
Confidence 3478999999999999999999999 88 4788999999999999999999 9999999999999999 899
Q ss_pred cccCCCCcccccccccccccceeeEeccCCchhhhhHHHhh----hhccCCCCccceEEEccCCCcccc--ccccccc--
Q psy8838 102 TVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTS----VVLDNPVFNKNVKIDIPLMPFYIE--KIDKLNE-- 173 (319)
Q Consensus 102 r~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~----~y~~~g~f~~PvvIr~P~GP~Iie--~p~q~~E-- 173 (319)
+ || |++++.+|+..|+||+.+. .|++||+++.||+|+.|.|..+.. .|+++.+
T Consensus 99 ~-----P~--------------v~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~~~~a~ 159 (356)
T PLN02683 99 K-----PV--------------VEFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCFAAW 159 (356)
T ss_pred E-----EE--------------EEEehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCccccCHHHH
Confidence 9 99 9999999999999999775 388999999999999998765543 3655444
Q ss_pred -cCCC---cccCCCC-CCCcchhhhhH----HHHHhhhhhhhhhhHHH------hhhhHHHHHHHHHhhhHHHHHHHHHH
Q psy8838 174 -RNNS---IIEDPVI-PSQAPEKHAIV----MIIRRRRKMKKHKLKKL------RIRMKFEWAKIRQRREMKKEKAFQLE 238 (319)
Q Consensus 174 -~~lP---vv~pp~~-da~~~~~~a~~----Vl~IRRKKMkKHK~rKl------rkR~kF~~aKVrr~R~~kke~~Fq~~ 238 (319)
..+| |+.|.+. +.+.....|.+ +..+.+|.+++.++... ...-+++.+++.+++.+.+..+++..
T Consensus 160 lr~iPnl~V~~Pad~~e~~~~l~~a~~~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G~~ 239 (356)
T PLN02683 160 YSSVPGLKVLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKM 239 (356)
T ss_pred HhcCCCCEEEEeCCHHHHHHHHHHHHhCCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEccHH
Confidence 7777 6777776 66666666665 33444566665432111 01224577777888999999999999
Q ss_pred HHHHHHhcccCChhhHHHHHHHHhccccccccccCCcHHHHHHHHHHH
Q psy8838 239 MSTKVKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTERK 286 (319)
Q Consensus 239 L~~~lkeAeaf~ae~YV~~~l~~a~~~~~p~~w~~lp~~~ik~~~~~~ 286 (319)
+..++++|+.+..+. +--.-.=+++++-|+++.|.+.+.+-
T Consensus 240 v~~Al~Aa~~L~~~G-------I~v~VId~~~ikPlD~~~l~~~~~~t 280 (356)
T PLN02683 240 VGYALKAAEILAKEG-------ISAEVINLRSIRPLDRDTINASVRKT 280 (356)
T ss_pred HHHHHHHHHHHHhcC-------CCEEEEECCCCCccCHHHHHHHHhhc
Confidence 999999998764322 11112235556667888777766543
No 7
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=99.88 E-value=2.9e-25 Score=209.42 Aligned_cols=227 Identities=14% Similarity=0.152 Sum_probs=175.6
Q ss_pred cccccHHHHHHHHHHHHHHhCCCeEE-ee---ecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cC
Q psy8838 27 SEQLTINFPLGSPVWALIADNDSTAI-EE---HFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LG 100 (319)
Q Consensus 27 ~~~lt~~~Ai~~al~~~m~~d~~v~i-GE---~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~G 100 (319)
|.++|+.+|++++|.++|++||++++ || ..||+|++|++|.++||++|++ |+||+|+.++|+|.|+ .|
T Consensus 1 ~~~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~------d~gIaE~~~vg~AaGlA~~G 74 (327)
T PRK09212 1 MAQLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVI------DTPITEHGFAGLAVGAAFAG 74 (327)
T ss_pred CCcchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCcee------ecchhHHHHHHHHHHHHHcC
Confidence 34678999999999999999999999 98 4899999999999999999999 9999999999999999 89
Q ss_pred CcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhh----hhccCCCCccceEEEccCCCc--cccccccccc-
Q psy8838 101 LTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTS----VVLDNPVFNKNVKIDIPLMPF--YIEKIDKLNE- 173 (319)
Q Consensus 101 lr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~----~y~~~g~f~~PvvIr~P~GP~--Iie~p~q~~E- 173 (319)
++ || |++++.+|+..|+||+.+. .|+++|++++|++++.|.|+. .+..|+++.|
T Consensus 75 ~~-----Pi--------------v~~~~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~~ea 135 (327)
T PRK09212 75 LR-----PI--------------VEFMTFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQCYAA 135 (327)
T ss_pred Ce-----eE--------------EEeehhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccCHHH
Confidence 99 99 9999999999999999775 388999999999999997653 3344877666
Q ss_pred --cCCC---cccCCCC-CCCcchhhhhH----HHHHhhhhhhhhhhHHHh---hhhHHHHHHHHHhhhHHHHHHHHHHHH
Q psy8838 174 --RNNS---IIEDPVI-PSQAPEKHAIV----MIIRRRRKMKKHKLKKLR---IRMKFEWAKIRQRREMKKEKAFQLEMS 240 (319)
Q Consensus 174 --~~lP---vv~pp~~-da~~~~~~a~~----Vl~IRRKKMkKHK~rKlr---kR~kF~~aKVrr~R~~kke~~Fq~~L~ 240 (319)
..+| |+.|.+. +....+..|.+ ++.+.++..+..+ .+.. ..-+++.+.+.+++.+-....|+..+.
T Consensus 136 ~~r~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~~~~~~~~~-~~~~~~~~~~~~Gk~~vl~~G~di~iva~G~~~~ 214 (327)
T PRK09212 136 WYSHIPGLKVVAPYFAADCKGLLKTAIRDPNPVIFLENEILYGHS-HEVPEEEESIPIGKAAILREGSDVTIVTFSIQVK 214 (327)
T ss_pred HHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCcEEEEEchhhcCCC-CCCCCCCccccCCeeEEEEeCCCEEEEEccHHHH
Confidence 7778 6777665 66667776765 4444455444321 1121 223457778888899999999999999
Q ss_pred HHHHhcccCChhhHHHHHHHHhccccccccccCCcHHHHHHHHHHH
Q psy8838 241 TKVKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTERK 286 (319)
Q Consensus 241 ~~lkeAeaf~ae~YV~~~l~~a~~~~~p~~w~~lp~~~ik~~~~~~ 286 (319)
.++++|+.+..+-. .+ .-.=+++.+-+|.+.|.+.+.+.
T Consensus 215 ~a~eAa~~L~~~Gi------~v-~vi~~~~l~Pld~~~i~~~~~~~ 253 (327)
T PRK09212 215 LALEAAELLEKEGI------SV-EVIDLRTLRPLDTETIIESVKKT 253 (327)
T ss_pred HHHHHHHHHHhcCC------cE-EEEEEecCCCCCHHHHHHHHHhC
Confidence 99999886532210 01 11123444448888888877654
No 8
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=99.86 E-value=4e-24 Score=204.58 Aligned_cols=228 Identities=13% Similarity=0.161 Sum_probs=175.0
Q ss_pred ccccccHHHHHHHHHHHHHHhCCCeEE-eee---cCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--c
Q psy8838 26 KSEQLTINFPLGSPVWALIADNDSTAI-EEH---FGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--L 99 (319)
Q Consensus 26 ~~~~lt~~~Ai~~al~~~m~~d~~v~i-GE~---~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~ 99 (319)
.|..+++.++++++|.++|++||++++ ||. +||+|+.+++|.++||++|++ |++|+|+.++|+|.|+ .
T Consensus 31 ~~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~i------d~GIaEq~~vg~AaGlA~~ 104 (355)
T PTZ00182 31 ATVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVF------DTPITEQGFAGFAIGAAMN 104 (355)
T ss_pred cccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCcee------ecCccHHHHHHHHHHHHhC
Confidence 467789999999999999999999999 883 568999999999999999999 9999999999999999 8
Q ss_pred CCcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhh----hccCCCCccceEEEccCCCc--cccccccccc
Q psy8838 100 GLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSV----VLDNPVFNKNVKIDIPLMPF--YIEKIDKLNE 173 (319)
Q Consensus 100 Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~----y~~~g~f~~PvvIr~P~GP~--Iie~p~q~~E 173 (319)
|++ || |+++|.+|...|+||+.+.. |++||++++|+|++.+.|.. .+..|+|+.|
T Consensus 105 G~~-----Pv--------------v~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~~e 165 (355)
T PTZ00182 105 GLR-----PI--------------AEFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQSFE 165 (355)
T ss_pred CCE-----EE--------------EEechhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccchHH
Confidence 999 99 99999999999999987753 67899999999999986543 3334777656
Q ss_pred ---cCCC---cccCCCC-CCCcchhhhhH----HHHHhhhhhhhhhhHHHh---hhhHHHHHHHHHhhhHHHHHHHHHHH
Q psy8838 174 ---RNNS---IIEDPVI-PSQAPEKHAIV----MIIRRRRKMKKHKLKKLR---IRMKFEWAKIRQRREMKKEKAFQLEM 239 (319)
Q Consensus 174 ---~~lP---vv~pp~~-da~~~~~~a~~----Vl~IRRKKMkKHK~rKlr---kR~kF~~aKVrr~R~~kke~~Fq~~L 239 (319)
..+| |+.|.+. +.......|.+ +..+.+|.+++.+..... ..-+++.+++.+++.+.....++..+
T Consensus 166 a~lr~iPn~~V~~Psd~~e~~~~l~~a~~~~~P~~i~~p~~l~r~~~~~~~~~~~~~~~Gk~~vl~~G~di~Iia~Gs~~ 245 (355)
T PTZ00182 166 AYFAHVPGLKVVAPSDPEDAKGLLKAAIRDPNPVVFFEPKLLYRESVEVVPEADYTLPLGKAKVVREGKDVTIVGYGSQV 245 (355)
T ss_pred HHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCcEEEEeehHHhCCCCCCCCcccccccCCcceEecCCCCEEEEEeCHHH
Confidence 7777 6777665 66666666665 545567777765422221 12346777888888999999999999
Q ss_pred HHHHHhcccCChhhHHHHHHHHhccccccccccCCcHHHHHHHHHH
Q psy8838 240 STKVKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTER 285 (319)
Q Consensus 240 ~~~lkeAeaf~ae~YV~~~l~~a~~~~~p~~w~~lp~~~ik~~~~~ 285 (319)
..++++|+.+..+.+ .+.--. +++++-+|++.|.+.+.+
T Consensus 246 ~~aleAa~~L~~~Gi------~v~vI~-~~~l~Pld~e~i~~~~~~ 284 (355)
T PTZ00182 246 HVALKAAEELAKEGI------SCEVID-LRSLRPWDRETIVKSVKK 284 (355)
T ss_pred HHHHHHHHHHHhCCC------cEEEEE-EeeCCCCCHHHHHHHHhc
Confidence 999999886543211 011111 233344777777766643
No 9
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=99.86 E-value=3.8e-22 Score=211.01 Aligned_cols=156 Identities=10% Similarity=0.019 Sum_probs=132.3
Q ss_pred cccHHHHHHHHHHHHHHhCCCeEE-ee---e--------------cCCccccccchhhhhCcCceeeecCCCCCCcchhH
Q psy8838 29 QLTINFPLGSPVWALIADNDSTAI-EE---H--------------FGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELV 90 (319)
Q Consensus 29 ~lt~~~Ai~~al~~~m~~d~~v~i-GE---~--------------~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ 90 (319)
.+++.+|++.|+..+|++|++|+| || . .||+|+.|+||.++||+.||+ ||||||.+
T Consensus 585 ~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~------nsplSE~a 658 (929)
T TIGR00239 585 LFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVW------NSVLSEES 658 (929)
T ss_pred CccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEE------cCCccHHH
Confidence 489999999999999999999999 99 2 689999999999999999999 99999999
Q ss_pred HHHHhhcc--cCCcccCCCCcccccccccccccceeeEeccCCchhh---hhHHHhh-hhccCCCCccceEEEccCCCcc
Q psy8838 91 FLTISQSA--LGLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPP---LASTSTS-VVLDNPVFNKNVKIDIPLMPFY 164 (319)
Q Consensus 91 ivG~avGa--~Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~a---ldqi~~~-~y~~~g~f~~PvvIr~P~GP~I 164 (319)
++|+++|+ .|+| .+|| +|+||.||+.+| +||++++ ..+++.. .++|+++|.|...
T Consensus 659 ~~G~~~G~a~~g~~---~l~i--------------~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~--sglv~~~p~G~~g 719 (929)
T TIGR00239 659 VLGFEYGYATTSPR---TLVI--------------WEAQFGDFANGAQVVIDQFISSGEQKWGQM--SGLVMLLPHGYEG 719 (929)
T ss_pred HHHHHHhHHhcCCC---CceE--------------EEEeccchhcchHHHHHHHHHHHHHHhcCc--cCeEEEecCcCCC
Confidence 99999999 8988 3358 899999999955 9999998 5555443 4499999998554
Q ss_pred ccc--cccccc-----cCCC---cccCCCC-CCCcchh-hhhH-----HHHHhhhhhhhhhh
Q psy8838 165 IEK--IDKLNE-----RNNS---IIEDPVI-PSQAPEK-HAIV-----MIIRRRRKMKKHKL 209 (319)
Q Consensus 165 ie~--p~q~~E-----~~lP---vv~pp~~-da~~~~~-~a~~-----Vl~IRRKKMkKHK~ 209 (319)
.+. ||+..| .+.| |+.|.|+ |++.+++ ||++ ||++.+|.|++|+.
T Consensus 720 ~g~~hsS~~~E~~lql~~~~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~ 781 (929)
T TIGR00239 720 QGPEHSSGRLERFLQLAAEQNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPL 781 (929)
T ss_pred CCchhhccCHHHHHHHhCCCCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCcc
Confidence 333 444455 3445 8999998 9999999 7887 89999999999984
No 10
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=99.83 E-value=6.5e-21 Score=201.73 Aligned_cols=193 Identities=8% Similarity=0.007 Sum_probs=149.1
Q ss_pred ccccHHHHHHHHHHHHHHhCCCeEE-ee--e---------------cCCccccccchhhhhCcCceeeecCCCCCCcchh
Q psy8838 28 EQLTINFPLGSPVWALIADNDSTAI-EE--H---------------FGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMEL 89 (319)
Q Consensus 28 ~~lt~~~Ai~~al~~~m~~d~~v~i-GE--~---------------~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~ 89 (319)
+.+++..|.+.|+..+|++|++|+| || . .||+|+.|+||.++||+.||+ ||||||.
T Consensus 582 ~~idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtFshRHavl~dq~~gg~~~~~~~l~~~~g~~rV~------nsplsE~ 655 (924)
T PRK09404 582 KPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVY------DSPLSEE 655 (924)
T ss_pred CCcCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcccccchhccccCCCCEeccccchhhhcCCceEe------cCcchHH
Confidence 3478999999999999999999999 99 2 789999999999999999999 9999999
Q ss_pred HHHHHhhcc--cCCcccCCCCcccccccccccccceeeEeccCCchhh---hhHHHhhh-hccCCCCccceEEEccCCCc
Q psy8838 90 VFLTISQSA--LGLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPP---LASTSTSV-VLDNPVFNKNVKIDIPLMPF 163 (319)
Q Consensus 90 ~ivG~avGa--~Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~a---ldqi~~~~-y~~~g~f~~PvvIr~P~GP~ 163 (319)
+++|+++|+ .|+| ..|| +|+||.||+.+| +||++++. ++++.. .++|+++|.|..
T Consensus 656 ~~~G~~~G~a~~g~~---~l~i--------------~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~--sglv~~~p~G~~ 716 (924)
T PRK09404 656 AVLGFEYGYSTAEPN---TLVI--------------WEAQFGDFANGAQVVIDQFISSGEQKWGRL--SGLVMLLPHGYE 716 (924)
T ss_pred HHHHHHHHHHhcCCC---CceE--------------EEEeccccccchHHHHHHHHHHHHHHhcCc--cCeEEEecCcCC
Confidence 999999999 8998 1149 999999999955 99999985 666655 459999999844
Q ss_pred cccc--cccccc--------cCCCcccCCCC-CCCcchhhh-hH-----HHHHhhhhhhhhhhH-----HHhhhhHHHHH
Q psy8838 164 YIEK--IDKLNE--------RNNSIIEDPVI-PSQAPEKHA-IV-----MIIRRRRKMKKHKLK-----KLRIRMKFEWA 221 (319)
Q Consensus 164 Iie~--p~q~~E--------~~lPvv~pp~~-da~~~~~~a-~~-----Vl~IRRKKMkKHK~r-----KlrkR~kF~~a 221 (319)
..+. ||+..| ..+=|+.|.|+ |++.+++++ ++ ||++.+|.|++|+.. .+..-. |.
T Consensus 717 g~g~~hsS~~~E~~l~~~~~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L~r~~~~~s~~~e~~~~~-f~-- 793 (924)
T PRK09404 717 GQGPEHSSARLERFLQLCAEDNMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEELAEGS-FQ-- 793 (924)
T ss_pred CCChhhhccCHHHHHHhCCCCCCEEEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHHhCCCCCCCCHHHcCCCC-ce--
Confidence 3332 333444 23338999998 888898864 33 999999999999731 111000 21
Q ss_pred HH-----HHhhhHH--HHHHHHHHHHHHHHhccc
Q psy8838 222 KI-----RQRREMK--KEKAFQLEMSTKVKEGER 248 (319)
Q Consensus 222 KV-----rr~R~~k--ke~~Fq~~L~~~lkeAea 248 (319)
++ .+.+++. ....+++.+..++++|+.
T Consensus 794 ~vi~~~~~~~~~~v~r~iv~~Gk~~~~~~~a~~~ 827 (924)
T PRK09404 794 PVIGDIDELDPKKVKRVVLCSGKVYYDLLEARRK 827 (924)
T ss_pred eecccccccCccceeEEEEEcCHHHHHHHHHHHh
Confidence 22 2233344 467788888888887764
No 11
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=99.79 E-value=3.8e-20 Score=160.88 Aligned_cols=136 Identities=17% Similarity=0.216 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHhCCCeEE-ee---ecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cCCcccCCC
Q psy8838 34 FPLGSPVWALIADNDSTAI-EE---HFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LGLTVLKNN 107 (319)
Q Consensus 34 ~Ai~~al~~~m~~d~~v~i-GE---~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~Glr~~~~~ 107 (319)
+|++++|.+++++||++++ |+ ..||+|..+++|.++|+++|++ |++|+|+.++|+|.|+ .|++
T Consensus 1 ~~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~------~~gIaEq~~vg~AaGlA~~G~~----- 69 (167)
T cd07036 1 QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVI------DTPIAEAGIVGLAVGAAMNGLR----- 69 (167)
T ss_pred CHHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhCCCceEE------eCCCcHHHHHHHHHHHHHcCCE-----
Confidence 4899999999999999999 88 3588999999999999998999 9999999999999999 8999
Q ss_pred CcccccccccccccceeeEeccCCchhhhhHHHhh----hhccCCCCccceEEEccCCCcccccccccc--c---cCCC-
Q psy8838 108 PTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTS----VVLDNPVFNKNVKIDIPLMPFYIEKIDKLN--E---RNNS- 177 (319)
Q Consensus 108 PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~----~y~~~g~f~~PvvIr~P~GP~Iie~p~q~~--E---~~lP- 177 (319)
|+ ++++|.+|...++||+.+. .|++||+++.||+|+.+.|+...+-+.++. + ..+|
T Consensus 70 pi--------------~~~~~a~Fl~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~ths~~~~a~lr~iPg 135 (167)
T cd07036 70 PI--------------VEIMFADFALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQHSQSLEAWFAHIPG 135 (167)
T ss_pred EE--------------EEeehHHHHHHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhhhhhHHHHHhcCCC
Confidence 99 9999999999999999764 378999999999999987763322233433 3 7778
Q ss_pred --cccCCCC-CCCcchhhhh
Q psy8838 178 --IIEDPVI-PSQAPEKHAI 194 (319)
Q Consensus 178 --vv~pp~~-da~~~~~~a~ 194 (319)
|+.|.+. +....+..++
T Consensus 136 ~~V~~Psd~~e~~~~l~~~~ 155 (167)
T cd07036 136 LKVVAPSTPYDAKGLLKAAI 155 (167)
T ss_pred CEEEeeCCHHHHHHHHHHHH
Confidence 6666665 4444444444
No 12
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=99.70 E-value=2.6e-18 Score=147.86 Aligned_cols=153 Identities=15% Similarity=0.150 Sum_probs=112.6
Q ss_pred ccccHHHHHHHHHHHHHHhCCCeEE-ee-ecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cC-Cc
Q psy8838 28 EQLTINFPLGSPVWALIADNDSTAI-EE-HFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LG-LT 102 (319)
Q Consensus 28 ~~lt~~~Ai~~al~~~m~~d~~v~i-GE-~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~G-lr 102 (319)
+++++.+|++++|.++|++||+|++ || .-||+|..+.|+...||++|++ |+||+|+.++|+|.|+ .| ++
T Consensus 1 ~k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~~~~~~~~~~~~~~r~i------~~gIaE~~~vg~a~GlA~~G~~~ 74 (178)
T PF02779_consen 1 KKISMRDAFGEALAELAEEDPRVVVIGADLGGGTFGVTFGLAFPFGPGRFI------NTGIAEQNMVGMAAGLALAGGLR 74 (178)
T ss_dssp -EEEHHHHHHHHHHHHHHHTTTEEEEESSTHHHHTSTTTTHHBHHTTTTEE------E--S-HHHHHHHHHHHHHHSSSE
T ss_pred CCccHHHHHHHHHHHHHhhCCCEEEEECCcCcchhhhhhhccccCCCceEE------ecCcchhhccceeeeeeeccccc
Confidence 4689999999999999999999999 98 4478999999999999999999 9999999999999999 78 57
Q ss_pred ccCCCCcccccccccccccceeeEeccCCchhh----hhHHHhhhhccCCCCccceEEEccCCCccccc-ccc-ccc---
Q psy8838 103 VLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPP----LASTSTSVVLDNPVFNKNVKIDIPLMPFYIEK-IDK-LNE--- 173 (319)
Q Consensus 103 ~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~a----ldqi~~~~y~~~g~f~~PvvIr~P~GP~Iie~-p~q-~~E--- 173 (319)
|+ ++++|.+|+.++ .+|+.+ ++..++.++|++++.+++...-+. |.. ..+
T Consensus 75 -----~~--------------~~~~f~~F~~~~q~r~~~~~~~--~~~~~~~~v~v~~~~g~~~~~~G~tH~s~~d~~~~ 133 (178)
T PF02779_consen 75 -----PP--------------VESTFADFLTPAQIRAFDQIRN--DMAYGQLPVPVGTRAGLGYGGDGGTHHSIEDEAIL 133 (178)
T ss_dssp -----EE--------------EEEEEGGGGGGGHHHHHHHHHH--HHHHHTS-EEEEEEESGGGSTTGTTTSSSSHHHHH
T ss_pred -----ce--------------eEeeccccccccchhhhhhhhh--hhhcccceecceeecCccccccccccccccccccc
Confidence 67 799999999944 444433 445567889988899985544443 322 222
Q ss_pred cCCC---cccCCCC-CCCcchhhhhH------HHHHhhhhhhhh
Q psy8838 174 RNNS---IIEDPVI-PSQAPEKHAIV------MIIRRRRKMKKH 207 (319)
Q Consensus 174 ~~lP---vv~pp~~-da~~~~~~a~~------Vl~IRRKKMkKH 207 (319)
..+| |+.|.+. +.......|++ +..+..|.++.|
T Consensus 134 ~~iPg~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r~~~~~ 177 (178)
T PF02779_consen 134 RSIPGMKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPRGLYPH 177 (178)
T ss_dssp HTSTTEEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEESSEES-
T ss_pred ccccccccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeHHhCCC
Confidence 7788 6777776 65566665555 445555555555
No 13
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=99.57 E-value=3.2e-15 Score=126.84 Aligned_cols=129 Identities=14% Similarity=0.144 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHhCCCeEE-eeecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cCCcccCCCCccc
Q psy8838 35 PLGSPVWALIADNDSTAI-EEHFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LGLTVLKNNPTTS 111 (319)
Q Consensus 35 Ai~~al~~~m~~d~~v~i-GE~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~Glr~~~~~PV~~ 111 (319)
+++++|.+++++||++++ ||+.+. .+.+++|.++| ++|++ |+||+|++++|+|.|+ .|++ ||
T Consensus 2 ~~~~~l~~~~~~~~~~v~~~~Dl~~-~~~~~~~~~~~-p~r~i------~~gIaE~~~vg~A~GlA~~G~~-----pi-- 66 (156)
T cd07033 2 AFGEALLELAKKDPRIVALSADLGG-STGLDKFAKKF-PDRFI------DVGIAEQNMVGIAAGLALHGLK-----PF-- 66 (156)
T ss_pred hHHHHHHHHHhhCCCEEEEECCCCC-CCCcHHHHHhC-CCCeE------EeChhHHHHHHHHHHHHHCCCe-----EE--
Confidence 688999999999999999 896653 47899999999 78999 9999999999999999 8999 99
Q ss_pred ccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEccCCCccc----cccccc-cc---cCCC---ccc
Q psy8838 112 AHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPLMPFYI----EKIDKL-NE---RNNS---IIE 180 (319)
Q Consensus 112 ~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~P~GP~Ii----e~p~q~-~E---~~lP---vv~ 180 (319)
++.+ .+|+..++||+.+..-. ...|++++.+.++.-. ..|+++ .+ ..+| |+.
T Consensus 67 ------------~~~~-~~f~~ra~dqi~~~~a~----~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~ 129 (156)
T cd07033 67 ------------VSTF-SFFLQRAYDQIRHDVAL----QNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLR 129 (156)
T ss_pred ------------EEEC-HHHHHHHHHHHHHHHhc----cCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEe
Confidence 9988 99999999999875533 2499999999654422 224332 22 7777 677
Q ss_pred CCCC-CCCcchhhhhH
Q psy8838 181 DPVI-PSQAPEKHAIV 195 (319)
Q Consensus 181 pp~~-da~~~~~~a~~ 195 (319)
|.+. +.+.+..+|++
T Consensus 130 Ps~~~~~~~ll~~a~~ 145 (156)
T cd07033 130 PADANETAAALEAALE 145 (156)
T ss_pred cCCHHHHHHHHHHHHh
Confidence 7776 66666666654
No 14
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.57 E-value=4.7e-17 Score=165.45 Aligned_cols=218 Identities=10% Similarity=0.013 Sum_probs=155.2
Q ss_pred cccHHHHHHHHHHHHHHhCCCeEE-eeecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cCCcccC
Q psy8838 29 QLTINFPLGSPVWALIADNDSTAI-EEHFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LGLTVLK 105 (319)
Q Consensus 29 ~lt~~~Ai~~al~~~m~~d~~v~i-GE~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~Glr~~~ 105 (319)
..++.+|++++|.+++++||++++ ....++.- .+.+|.++| ++|++ |+||+|+.++|+|.|+ .|++
T Consensus 309 ~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~-~~~~f~~~f-P~R~~------d~GIaEq~~vg~AaGlA~~G~~--- 377 (617)
T TIGR00204 309 LPSYSKIFSDTLCELAKKDNKIVGITPAMPEGS-GLDKFSRKF-PDRYF------DVAIAEQHAVTFAAGMAIEGYK--- 377 (617)
T ss_pred CccHHHHHHHHHHHHHhhCcCEEEEECCccCCc-ChHHHHHHC-ccccc------cCCccHHHHHHHHHHHHHCCCE---
Confidence 468999999999999999999998 55432222 279999999 89999 9999999999999999 8999
Q ss_pred CCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEccCCCcccc---ccccccc----cCCC-
Q psy8838 106 NNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPLMPFYIE---KIDKLNE----RNNS- 177 (319)
Q Consensus 106 ~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~P~GP~Iie---~p~q~~E----~~lP- 177 (319)
|| |++ |.+|+..|+||+.+..-. .+.||+|+.+.++...+ .|+++.+ ..+|
T Consensus 378 --Pv--------------v~~-~a~Fl~ra~dQi~~~~a~----~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPg 436 (617)
T TIGR00204 378 --PF--------------VAI-YSTFLQRAYDQVVHDVCI----QKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPN 436 (617)
T ss_pred --EE--------------EEe-cHHHHHHHHHHHHHHHHh----cCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCC
Confidence 99 888 999999999999987643 25899999986655544 2666655 7778
Q ss_pred --cccCCCC-CCCcchhhhhH-----HHHHhhhhhhhhhh-HHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Q psy8838 178 --IIEDPVI-PSQAPEKHAIV-----MIIRRRRKMKKHKL-KKLRIRMKFEWAKIRQRREMKKEKAFQLEMSTKVKEGER 248 (319)
Q Consensus 178 --vv~pp~~-da~~~~~~a~~-----Vl~IRRKKMkKHK~-rKlrkR~kF~~aKVrr~R~~kke~~Fq~~L~~~lkeAea 248 (319)
|+.|... +....+..|++ +..+..|....... -.-...-+++.++|.+++.+.+..+|+.++..++++|+.
T Consensus 437 l~V~~Psd~~e~~~~l~~a~~~~~~Pv~ir~~r~~~~~~~~~~~~~~~~~Gk~~vlr~G~dvtIva~G~~v~~al~Aa~~ 516 (617)
T TIGR00204 437 MVIMAPSDENELRQMLYTGYHYDDGPIAVRYPRGNAVGVELTPEPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAES 516 (617)
T ss_pred cEEEeeCCHHHHHHHHHHHHhCCCCCEEEEEccCCcCCcccCCccccccCCceEEEEcCCCEEEEEcCHHHHHHHHHHHH
Confidence 6777776 66666666654 22222333221110 000123356777888889999999999999999999987
Q ss_pred CChhhHHHHHHHHhccccccccccCCcHHHHHHHHHH
Q psy8838 249 FSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTER 285 (319)
Q Consensus 249 f~ae~YV~~~l~~a~~~~~p~~w~~lp~~~ik~~~~~ 285 (319)
+..+..=.+.+. +++-+-++.+.|.+.+.+
T Consensus 517 L~~~gi~~~VId-------~~~lkPlD~e~i~~~~~k 546 (617)
T TIGR00204 517 LNEKGIEATVVD-------ARFVKPLDEELILEIAAS 546 (617)
T ss_pred HHhcCCCEEEEe-------cCcCCcCCHHHHHHHHhh
Confidence 543221111111 233344667777666643
No 15
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.52 E-value=1.6e-16 Score=164.01 Aligned_cols=230 Identities=11% Similarity=0.023 Sum_probs=160.6
Q ss_pred hhhhhcccccc-cccccHHHHHHHHHHHHHHhCCCeEE-eeecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHH
Q psy8838 16 VSIKVGAEIIK-SEQLTINFPLGSPVWALIADNDSTAI-EEHFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLT 93 (319)
Q Consensus 16 ~~~~~~~~~~~-~~~lt~~~Ai~~al~~~m~~d~~v~i-GE~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG 93 (319)
..+.+|..... ...-+|.++++++|.++|++||++++ ++..||.|+.+ +|.++| ++|+| |++|+|+.++|
T Consensus 341 f~~~~g~~~~~~~~~~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl~-~f~~~f-P~R~f------dvGIAEq~~vg 412 (677)
T PLN02582 341 FDPATGKQFKVKAKTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLN-LFARRF-PTRCF------DVGIAEQHAVT 412 (677)
T ss_pred CCcccCCccCCCCCCcCHHHHHHHHHHHHHccCCCEEEEeCCCCCccchH-HHHHHc-Ccccc------ccCcCHHHHHH
Confidence 44455543221 22358999999999999999999999 99899999985 899999 79999 99999999999
Q ss_pred Hhhcc--cCCcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEccCCCccccc---c
Q psy8838 94 ISQSA--LGLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPLMPFYIEK---I 168 (319)
Q Consensus 94 ~avGa--~Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~P~GP~Iie~---p 168 (319)
+|.|+ .|++ || |++ |.+|+..|+||+.+.... .+.||++..+.++..++. |
T Consensus 413 ~AaGLA~~G~k-----Pv--------------v~~-fs~Fl~RA~DQI~~dval----~~lpVv~v~~~aG~vg~dG~TH 468 (677)
T PLN02582 413 FAAGLACEGLK-----PF--------------CAI-YSSFLQRGYDQVVHDVDL----QKLPVRFAMDRAGLVGADGPTH 468 (677)
T ss_pred HHHHHHHCCCe-----EE--------------EEe-cHHHHHHHHHHHHHHHHh----cCCCEEEEEECCCcccCCCCcc
Confidence 99999 8999 99 887 999999999999887643 358999988865554443 5
Q ss_pred ccccc----cCCC---cccCCCC-CCCcchhhhhH-----HHHHhhhhhh-hhhhHHH--hhhhHHHHHHHHHhhhHHHH
Q psy8838 169 DKLNE----RNNS---IIEDPVI-PSQAPEKHAIV-----MIIRRRRKMK-KHKLKKL--RIRMKFEWAKIRQRREMKKE 232 (319)
Q Consensus 169 ~q~~E----~~lP---vv~pp~~-da~~~~~~a~~-----Vl~IRRKKMk-KHK~rKl--rkR~kF~~aKVrr~R~~kke 232 (319)
+++.+ ..+| |+.|... +....+..|.+ +..+-.|..- .....+- ...-+++.+.+.+++++.+.
T Consensus 469 ~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~al~~~~gPv~IR~pr~~~~~~~~~~~~~~~~~~iGk~~vlr~G~dvtI 548 (677)
T PLN02582 469 CGAFDVTYMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVQLPPNNKGIPIEVGKGRILLEGERVAL 548 (677)
T ss_pred cccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCCEEEEEecCCCCCcccCCcccccccccCceEEEEeCCCEEE
Confidence 55544 6778 5666665 65555555552 2222233221 1010000 01124556667778899999
Q ss_pred HHHHHHHHHHHHhcccCChhhHHHHHHHHhccccccccccCCcHHHHHHHHH
Q psy8838 233 KAFQLEMSTKVKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTE 284 (319)
Q Consensus 233 ~~Fq~~L~~~lkeAeaf~ae~YV~~~l~~a~~~~~p~~w~~lp~~~ik~~~~ 284 (319)
.+++.++..++++|+.+..+..=. .-.=+++++-|++.+|.+.+.
T Consensus 549 va~G~~v~~Al~Aa~~L~~~GI~~-------~VId~~~lkPlD~~~i~~~~k 593 (677)
T PLN02582 549 LGYGTAVQSCLAAASLLERHGLSA-------TVADARFCKPLDRALIRSLAK 593 (677)
T ss_pred EeecHHHHHHHHHHHHHHhcCCCE-------EEEEcCcCCCCCHHHHHHHhh
Confidence 999999999999998763321100 111234555577777766543
No 16
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.52 E-value=9.9e-16 Score=153.86 Aligned_cols=188 Identities=14% Similarity=0.081 Sum_probs=142.1
Q ss_pred ccHHHHHHHHHHHHHHhCCCeEE-eeecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cCCcccCC
Q psy8838 30 LTINFPLGSPVWALIADNDSTAI-EEHFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LGLTVLKN 106 (319)
Q Consensus 30 lt~~~Ai~~al~~~m~~d~~v~i-GE~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~Glr~~~~ 106 (319)
.++.++++++|.+++++||++++ +....+..+.+. |.++| ++|++ |++|+|++++|+|.|+ .|++
T Consensus 279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~~~-f~~~~-p~R~i------~~GIaE~~mvg~A~GlA~~G~~---- 346 (580)
T PRK05444 279 PSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLVK-FSKRF-PDRYF------DVGIAEQHAVTFAAGLATEGLK---- 346 (580)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCHHH-HHHHh-hhhcc------CCChHHHHHHHHHHHHHHCCCe----
Confidence 67999999999999999999998 664332235555 99999 79999 9999999999999999 8999
Q ss_pred CCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEccCCCccccc---cccccc----cCCC--
Q psy8838 107 NPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPLMPFYIEK---IDKLNE----RNNS-- 177 (319)
Q Consensus 107 ~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~P~GP~Iie~---p~q~~E----~~lP-- 177 (319)
|| |+. |.+|+..|+||+.+..-+ .+.|++++.+.++...+. |+++.+ +.+|
T Consensus 347 -p~--------------~~~-f~~F~~ra~dQi~~~~a~----~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l 406 (580)
T PRK05444 347 -PV--------------VAI-YSTFLQRAYDQVIHDVAL----QNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNM 406 (580)
T ss_pred -eE--------------EEe-eHHHHHHHHHHHHHHhhh----cCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCC
Confidence 99 887 999999999999886432 369999999865554442 555543 7888
Q ss_pred -cccCCCC-CCCcchhhhhH-----HHHHhhhhhhhhh-hHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcccC
Q psy8838 178 -IIEDPVI-PSQAPEKHAIV-----MIIRRRRKMKKHK-LKKLRIRMKFEWAKIRQRREMKKEKAFQLEMSTKVKEGERF 249 (319)
Q Consensus 178 -vv~pp~~-da~~~~~~a~~-----Vl~IRRKKMkKHK-~rKlrkR~kF~~aKVrr~R~~kke~~Fq~~L~~~lkeAeaf 249 (319)
|+.|.+. +......+|++ +..+..|.....- ... ...-+++...+.+.+++.+..+++.++..++++|+.+
T Consensus 407 ~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~-~~~~~~Gk~~vl~~G~dvtIia~G~~v~~al~Aa~~L 485 (580)
T PRK05444 407 VIMAPSDENELRQMLYTALAYDDGPIAIRYPRGNGVGVELPE-LEPLPIGKGEVLREGEDVAILAFGTMLAEALKAAERL 485 (580)
T ss_pred EEEeeCCHHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCCCC-cccccCCceEEEEcCCCEEEEEccHHHHHHHHHHHHh
Confidence 7888776 77777777773 3333344332221 111 1122356666666788999999999999999999876
Q ss_pred C
Q psy8838 250 S 250 (319)
Q Consensus 250 ~ 250 (319)
.
T Consensus 486 ~ 486 (580)
T PRK05444 486 A 486 (580)
T ss_pred C
Confidence 4
No 17
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.51 E-value=9e-16 Score=157.84 Aligned_cols=204 Identities=12% Similarity=0.028 Sum_probs=143.7
Q ss_pred chhhhhcccccc-cccccHHHHHHHHHHHHHHhCCCeEE-eeecCCcccc-ccchhhhhCcCceeeecCCCCCCcchhHH
Q psy8838 15 VVSIKVGAEIIK-SEQLTINFPLGSPVWALIADNDSTAI-EEHFGQKFNS-QRGLMDGFSQCQLMAVSLCGHSLIMELVF 91 (319)
Q Consensus 15 ~~~~~~~~~~~~-~~~lt~~~Ai~~al~~~m~~d~~v~i-GE~~GgvF~~-t~GL~~~FG~~RV~~~~~~~dTPIsE~~i 91 (319)
..+..+|..... ...+||.+|++++|.++|++||++++ ++..|| ++ ...+.++| ++|++ |++|+|+.+
T Consensus 341 ~~~~~~g~~~~~~~~~~sy~~af~~aL~e~a~~D~~Iv~l~adm~g--gt~~~~f~~~f-PdR~f------dvGIAEq~~ 411 (641)
T PLN02234 341 KFDPETGKQFKNISKTQSYTSCFVEALIAEAEADKDIVAIHAAMGG--GTMLNLFESRF-PTRCF------DVGIAEQHA 411 (641)
T ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHHCcCEEEEECCCCC--CcchHHHHHHc-ccccc------CCCcCHHHH
Confidence 455566654322 23479999999999999999999999 996555 33 45566688 89999 999999999
Q ss_pred HHHhhcc--cCCcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEc-cCC--Ccccc
Q psy8838 92 LTISQSA--LGLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDI-PLM--PFYIE 166 (319)
Q Consensus 92 vG~avGa--~Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~-P~G--P~Iie 166 (319)
+|+|.|+ .|++ || |++ |.+|+..|+||+.+...+ .+.|+++.. ..| +.-+.
T Consensus 412 Vg~AaGLA~~G~r-----Pv--------------v~~-fs~Fl~RA~DQI~~dva~----~~lpV~~v~~~aG~~g~dG~ 467 (641)
T PLN02234 412 VTFAAGLACEGLK-----PF--------------CTI-YSSFMQRAYDQVVHDVDL----QKLPVRFAIDRAGLMGADGP 467 (641)
T ss_pred HHHHHHHHHCCCe-----EE--------------EEe-hHHHHHHHHHHHHHHHhh----cCCCEEEEEeCCccCCCCCc
Confidence 9999999 8999 99 887 999999999999997643 235665554 222 11223
Q ss_pred ccccccc----cCCC---cccCCCC-CCCcchhhhhH-----HHHHhhhhhh-hhhhH-HH-hhhhHHHHHHHHHhhhHH
Q psy8838 167 KIDKLNE----RNNS---IIEDPVI-PSQAPEKHAIV-----MIIRRRRKMK-KHKLK-KL-RIRMKFEWAKIRQRREMK 230 (319)
Q Consensus 167 ~p~q~~E----~~lP---vv~pp~~-da~~~~~~a~~-----Vl~IRRKKMk-KHK~r-Kl-rkR~kF~~aKVrr~R~~k 230 (319)
.|+++.+ ..+| |+.|... +.......|.. ++++..|... +...- +. ...-+++.+++.+++++.
T Consensus 468 TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~R~~~~~~~~~~~~~~~~~~iGk~~vlreG~dv 547 (641)
T PLN02234 468 THCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAAIDDRPSCFRYHRGNGIGVSLPPGNKGVPLQIGRGRILRDGERV 547 (641)
T ss_pred cccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCCEEEEeecccccccccCCCCccccccCceEEEEEeCCCE
Confidence 3666555 6788 6777665 66555555432 3444444332 11100 00 011256777888889999
Q ss_pred HHHHHHHHHHHHHHhcccCCh
Q psy8838 231 KEKAFQLEMSTKVKEGERFSA 251 (319)
Q Consensus 231 ke~~Fq~~L~~~lkeAeaf~a 251 (319)
+..+|+.++..++++|+.+..
T Consensus 548 tIva~G~~v~~Al~AA~~L~~ 568 (641)
T PLN02234 548 ALLGYGSAVQRCLEAASMLSE 568 (641)
T ss_pred EEEEecHHHHHHHHHHHHHHh
Confidence 999999999999999987643
No 18
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.49 E-value=1.4e-15 Score=153.60 Aligned_cols=215 Identities=9% Similarity=-0.028 Sum_probs=152.9
Q ss_pred cccHHHHHHHHHHHHHHhCCCeEE-eeecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cCCcccC
Q psy8838 29 QLTINFPLGSPVWALIADNDSTAI-EEHFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LGLTVLK 105 (319)
Q Consensus 29 ~lt~~~Ai~~al~~~m~~d~~v~i-GE~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~Glr~~~ 105 (319)
..++.++++++|.+++++||++++ ++..+|.++. .+|.++| ++|++ |++|+|+.++|+|.|+ .|++
T Consensus 277 ~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~~-~~f~~~f-P~R~i------d~GIaEq~~v~~AaGlA~~G~~--- 345 (581)
T PRK12315 277 GESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFGL-KEFRKKY-PDQYV------DVGIAEQESVAFASGIAANGAR--- 345 (581)
T ss_pred CcCHHHHHHHHHHHHhccCCCEEEEeCccccccCc-HHHHHhc-ccccc------CCCchHHHHHHHHHHHHHCcCe---
Confidence 568999999999999999999999 9988898887 9999999 58999 9999999999999999 8999
Q ss_pred CCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEccCCCccc--cccccccc----cCCC--
Q psy8838 106 NNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPLMPFYI--EKIDKLNE----RNNS-- 177 (319)
Q Consensus 106 ~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~P~GP~Ii--e~p~q~~E----~~lP-- 177 (319)
|| | .+|.+|...|+||+.+..-+. +.||+++.+.++... ..|+++.. +.+|
T Consensus 346 --Pv--------------v-~~fs~Fl~ra~dQi~~d~a~~----~lpv~~~~~~~g~~~dG~TH~~~~Dia~lr~iPnl 404 (581)
T PRK12315 346 --PV--------------I-FVNSTFLQRAYDQLSHDLAIN----NNPAVMIVFGGSISGNDVTHLGIFDIPMISNIPNL 404 (581)
T ss_pred --EE--------------E-EeeHHHHHHHHHHHHHHHHhc----CCCEEEEEECCcccCCCccccccHHHHHHhcCCCC
Confidence 99 6 999999999999998865332 589999988654442 22555543 7778
Q ss_pred -cccCCCC-CCCcchhhhhH-----HHHHhhhhhhhhhhHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcccCC
Q psy8838 178 -IIEDPVI-PSQAPEKHAIV-----MIIRRRRKMKKHKLKKLRIRMKFEWAKIRQRREMKKEKAFQLEMSTKVKEGERFS 250 (319)
Q Consensus 178 -vv~pp~~-da~~~~~~a~~-----Vl~IRRKKMkKHK~rKlrkR~kF~~aKVrr~R~~kke~~Fq~~L~~~lkeAeaf~ 250 (319)
|+.|... +.......|.+ +..+..|.........-..-.. +.+.+.+++.+.+..+++.++..++++|+.+.
T Consensus 405 ~V~~P~d~~e~~~~l~~a~~~~~gP~~ir~~r~~~~~~~~~~~~~~~-~k~~v~~~g~dvtiia~G~~v~~Al~Aa~~L~ 483 (581)
T PRK12315 405 VYLAPTTKEELIAMLEWALTQHEHPVAIRVPEHGVESGPTVDTDYST-LKYEVTKAGEKVAILALGDFYELGEKVAKKLK 483 (581)
T ss_pred EEEecCCHHHHHHHHHHHHhCCCCcEEEEEcCCccCCCCCCccCccc-ceEEEEecCCCEEEEEEchHHHHHHHHHHHHh
Confidence 6676665 55555555543 3334444443322110000011 23445566789999999999999999999774
Q ss_pred hh-hHHHHHHHHhccccccccccCCcHHHHHHHH
Q psy8838 251 AE-QYVENKLQLLHAEQLAESWKNVPESFIKEWT 283 (319)
Q Consensus 251 ae-~YV~~~l~~a~~~~~p~~w~~lp~~~ik~~~ 283 (319)
.+ ..=.+.+ =.++++-|+++.|.++.
T Consensus 484 ~~~gi~~~Vi-------d~~~ikPlD~~~i~~~~ 510 (581)
T PRK12315 484 EELGIDATLI-------NPKFITGLDEELLEKLK 510 (581)
T ss_pred hhcCCCEEEE-------ecCcCCCCCHHHHHHHH
Confidence 43 2111111 13444446676665543
No 19
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.41 E-value=2.5e-14 Score=148.63 Aligned_cols=230 Identities=9% Similarity=-0.011 Sum_probs=156.9
Q ss_pred hhhcccccccccccHHHHHHHHHHHHHHhCCCeEE-eeecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhh
Q psy8838 18 IKVGAEIIKSEQLTINFPLGSPVWALIADNDSTAI-EEHFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQ 96 (319)
Q Consensus 18 ~~~~~~~~~~~~lt~~~Ai~~al~~~m~~d~~v~i-GE~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~av 96 (319)
+.+|........++|.++++++|.+++++||++++ +...++ ...+.++.++| ++|+| |++|+|+.++|+|.
T Consensus 369 ~~tg~~~~~~~~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~-gtgl~~f~~~f-PdRff------DvGIAEQhaVt~AA 440 (701)
T PLN02225 369 AETGKNIMVKDRRTYSDCFVEALVMEAEKDRDIVVVHAGMEM-DASLITFQERF-PDRFF------NVGMAEQHAVTFSA 440 (701)
T ss_pred CCCCCcCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCccC-cccHHHHHHHc-ccccc------ccCccHHHHHHHHH
Confidence 34454222234578999999999999999999999 774432 12368999999 89999 99999999999999
Q ss_pred cc--cCCcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEccCCCcc-ccccccccc
Q psy8838 97 SA--LGLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPLMPFY-IEKIDKLNE 173 (319)
Q Consensus 97 Ga--~Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~P~GP~I-ie~p~q~~E 173 (319)
|+ .|++ || |+++ .+|+..|+||+.+..-+.+ .+++++++.+...+- ++.|+.+.+
T Consensus 441 GLA~~G~k-----Pv--------------v~iy-stFlqRAyDQI~~Dval~~--lpV~~vid~aGlvg~DG~TH~g~~D 498 (701)
T PLN02225 441 GLSSGGLK-----PF--------------CIIP-SAFLQRAYDQVVHDVDRQR--KAVRFVITSAGLVGSDGPVQCGAFD 498 (701)
T ss_pred HHHHCCCE-----EE--------------EEee-hhHHHHHHHHHHHHHHhhc--CCceEEEECCccCCCCCccccccHH
Confidence 99 8999 99 8766 7999999999999764432 578888887643321 223555544
Q ss_pred ----cCCC---cccCCCC-CCCcchhhhhH-----HHHHhhhhhh-hhh--hHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Q psy8838 174 ----RNNS---IIEDPVI-PSQAPEKHAIV-----MIIRRRRKMK-KHK--LKKLRIRMKFEWAKIRQRREMKKEKAFQL 237 (319)
Q Consensus 174 ----~~lP---vv~pp~~-da~~~~~~a~~-----Vl~IRRKKMk-KHK--~rKlrkR~kF~~aKVrr~R~~kke~~Fq~ 237 (319)
..+| |+.|... +....+..|.. +..+.+|... ..+ ... ...-+++.+++.+++.+.+..+|+.
T Consensus 499 ia~lr~IPnm~V~aPsD~~El~~mL~~A~~~~~gPv~IR~pRg~~~~~~~~~~~-~~~~~iGK~~vlreG~dvtIia~G~ 577 (701)
T PLN02225 499 IAFMSSLPNMIAMAPADEDELVNMVATAAYVTDRPVCFRFPRGSIVNMNYLVPT-GLPIEIGRGRVLVEGQDVALLGYGA 577 (701)
T ss_pred HHHHhcCCCCEEEeeCCHHHHHHHHHHHHhcCCCCEEEEecccccCCCCcCCCC-CccccCcceEEEEeCCCEEEEeccH
Confidence 7888 4555554 54444444441 3344444432 111 011 1122456667778899999999999
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHhccccccccccCCcHHHHHHHHHH
Q psy8838 238 EMSTKVKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTER 285 (319)
Q Consensus 238 ~L~~~lkeAeaf~ae~YV~~~l~~a~~~~~p~~w~~lp~~~ik~~~~~ 285 (319)
.+..++++|+.+..+.. --.-.=+++-+-|+++.|.+.+.+
T Consensus 578 mv~~Al~AA~~L~~~GI-------~vtVIdlr~ikPLD~e~I~~~~~k 618 (701)
T PLN02225 578 MVQNCLHAHSLLSKLGL-------NVTVADARFCKPLDIKLVRDLCQN 618 (701)
T ss_pred HHHHHHHHHHHHHhcCC-------CEEEEecCCCCCCCHHHHHHHHhh
Confidence 99999999986643211 111112455555889888887654
No 20
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.36 E-value=2.9e-14 Score=145.88 Aligned_cols=190 Identities=11% Similarity=0.042 Sum_probs=136.9
Q ss_pred ccHHHHHHHHHHHHHHhCCCeEE-eeecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cCCcccCC
Q psy8838 30 LTINFPLGSPVWALIADNDSTAI-EEHFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LGLTVLKN 106 (319)
Q Consensus 30 lt~~~Ai~~al~~~m~~d~~v~i-GE~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~Glr~~~~ 106 (319)
-++.++++++|.+++++||++++ ++..+|.-+ ..+|.++| ++|++ |++|+|+.++|+|.|+ .|++
T Consensus 319 ~~~~~~f~~~L~~la~~d~~iv~isadl~~~~~-~~~f~~~~-p~R~i------d~GIaE~~mvg~AaGlA~~G~~---- 386 (641)
T PRK12571 319 PSYTSVFGEELTKEAAEDSDIVAITAAMPLGTG-LDKLQKRF-PNRVF------DVGIAEQHAVTFAAGLAAAGLK---- 386 (641)
T ss_pred hhHHHHHHHHHHHHHhhCCCEEEEeCCccCCCC-hHHHHHhC-CCccc------ccCccHHHHHHHHHHHHHCCCE----
Confidence 47899999999999999999998 674333223 48899999 78999 9999999999999999 8999
Q ss_pred CCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEccCCCcccc---ccccccc----cCCC--
Q psy8838 107 NPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPLMPFYIE---KIDKLNE----RNNS-- 177 (319)
Q Consensus 107 ~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~P~GP~Iie---~p~q~~E----~~lP-- 177 (319)
|| |++ |.+|+..|+||+.+..-+ .+.|+++.....+..++ .|+++.+ +.+|
T Consensus 387 -P~--------------v~~-f~~Fl~ra~dQI~~~~a~----~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl 446 (641)
T PRK12571 387 -PF--------------CAV-YSTFLQRGYDQLLHDVAL----QNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNM 446 (641)
T ss_pred -EE--------------EEe-hHHHHHHHHHHHHHHHhh----cCCCeEEEEECCCcCCCCCccccccHHHHHHhcCCCC
Confidence 99 887 999999999999886432 35777776532222333 3666544 7888
Q ss_pred -cccCCCC-CCCcchhhhhH-----HHHHhhhhhhhh-hhHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcccC
Q psy8838 178 -IIEDPVI-PSQAPEKHAIV-----MIIRRRRKMKKH-KLKKLRIRMKFEWAKIRQRREMKKEKAFQLEMSTKVKEGERF 249 (319)
Q Consensus 178 -vv~pp~~-da~~~~~~a~~-----Vl~IRRKKMkKH-K~rKlrkR~kF~~aKVrr~R~~kke~~Fq~~L~~~lkeAeaf 249 (319)
|+.|... +.......|.+ +..+..|..... -..+-...-+++.+.+.+++.+-+..+++.++..++++|+.+
T Consensus 447 ~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~~~gk~~vlr~G~ditIva~G~~v~~aleAa~~L 526 (641)
T PRK12571 447 TVMAPRDEAELRHMLRTAAAHDDGPIAVRFPRGEGVGVEIPAEGTILGIGKGRVPREGPDVAILSVGAHLHECLDAADLL 526 (641)
T ss_pred EEEeeCCHHHHHHHHHHHHhCCCCcEEEEEecCcCCccccCCCCccccCceeEEEecCCCEEEEEecHHHHHHHHHHHHH
Confidence 6777766 66666666654 333333432210 000000113456666777889999999999999999999876
Q ss_pred Ch
Q psy8838 250 SA 251 (319)
Q Consensus 250 ~a 251 (319)
..
T Consensus 527 ~~ 528 (641)
T PRK12571 527 EA 528 (641)
T ss_pred Hh
Confidence 43
No 21
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.28 E-value=8.3e-12 Score=105.65 Aligned_cols=129 Identities=13% Similarity=0.096 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHhCC-CeEE-eee--------cCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--c
Q psy8838 32 INFPLGSPVWALIADND-STAI-EEH--------FGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--L 99 (319)
Q Consensus 32 ~~~Ai~~al~~~m~~d~-~v~i-GE~--------~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~ 99 (319)
+.++++++|.+++++|+ ++++ |+. .+++|..++|| ++.|++ |+||+|++++|++.|+ .
T Consensus 2 ~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~----~~~R~~------~~gIaE~~~vg~a~GlA~~ 71 (168)
T smart00861 2 TRKAFGEALAELAERDPERVVVSGADVGGSTGLDRGGVFPDTKGL----GPGRVI------DTGIAEQAMVGFAAGLALA 71 (168)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCCCcCCccCCCCCC----CCccEE------EcCcCHHHHHHHHHHHHHc
Confidence 57899999999999966 7777 882 37899999999 788999 9999999999999999 8
Q ss_pred CCcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEccCCCccccc---cccc-cc--
Q psy8838 100 GLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPLMPFYIEK---IDKL-NE-- 173 (319)
Q Consensus 100 Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~P~GP~Iie~---p~q~-~E-- 173 (319)
|++ || ++.++.. ..-+.+|+.+..... +.|++++.+.|....+- |... .+
T Consensus 72 G~~-----pi--------------~~~~~~f-~~~a~~~~~~~~~~~----~~~~v~~~~~g~~~g~~G~tH~~~~~~~~ 127 (168)
T smart00861 72 GLR-----PV--------------VAIFFTF-FDRAKDQIRSDGAMG----RVPVVVRHDSGGGVGEDGPTHHSQEDEAL 127 (168)
T ss_pred CCC-----cE--------------EEeeHHH-HHHHHHHHHHhCccc----CCCEEEEecCccccCCCCccccchhHHHH
Confidence 988 99 7766554 446788775543322 58999999866555552 3332 22
Q ss_pred -cCCC---cccCCCC-CCCcchhhhh
Q psy8838 174 -RNNS---IIEDPVI-PSQAPEKHAI 194 (319)
Q Consensus 174 -~~lP---vv~pp~~-da~~~~~~a~ 194 (319)
..+| |+.|... +.......|.
T Consensus 128 ~~~iP~~~v~~P~~~~e~~~~l~~a~ 153 (168)
T smart00861 128 LRAIPGLKVVAPSDPAEAKGLLRAAI 153 (168)
T ss_pred HhcCCCcEEEecCCHHHHHHHHHHHH
Confidence 7888 7888777 5555555554
No 22
>PF08213 DUF1713: Mitochondrial domain of unknown function (DUF1713); InterPro: IPR013177 This domain is found at the C-terminal end of mitochondrial proteins of unknown function.
Probab=98.98 E-value=3.4e-10 Score=77.99 Aligned_cols=33 Identities=48% Similarity=0.616 Sum_probs=31.4
Q ss_pred hhhHHHHHhhhhhhhhhhHHHhhhhHHHHHHHH
Q psy8838 192 HAIVMIIRRRRKMKKHKLKKLRIRMKFEWAKIR 224 (319)
Q Consensus 192 ~a~~Vl~IRRKKMkKHK~rKlrkR~kF~~aKVr 224 (319)
+|.+|+.+||+||+||||+||+||+.|+|+++.
T Consensus 1 q~~sv~kkRr~KM~kHK~kKlrKr~r~~rrkl~ 33 (34)
T PF08213_consen 1 QADSVKKKRRKKMKKHKYKKLRKRTRFLRRKLG 33 (34)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999875
No 23
>PRK05899 transketolase; Reviewed
Probab=98.92 E-value=1.4e-09 Score=110.50 Aligned_cols=203 Identities=14% Similarity=0.037 Sum_probs=131.6
Q ss_pred ccccHHHHHHHHHHHHHHhCCCeEE-eee-cCCccccccchhhhhCc----CceeeecCCCCCCcchhHHHHHhhcc--c
Q psy8838 28 EQLTINFPLGSPVWALIADNDSTAI-EEH-FGQKFNSQRGLMDGFSQ----CQLMAVSLCGHSLIMELVFLTISQSA--L 99 (319)
Q Consensus 28 ~~lt~~~Ai~~al~~~m~~d~~v~i-GE~-~GgvF~~t~GL~~~FG~----~RV~~~~~~~dTPIsE~~ivG~avGa--~ 99 (319)
+.+++.++++++|.+++++||++++ ++. -++.+..+.+ .+.||+ +|++ |++|+|+.++|+|.|+ .
T Consensus 317 ~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~~~~~~~~~~~-~~~f~~~~~p~R~~------d~GIaE~~~vg~A~GlA~~ 389 (624)
T PRK05899 317 EKVATRKASGKALNALAKALPELVGGSADLAGSNNTKIKG-SKDFAPEDYSGRYI------HYGVREFAMAAIANGLALH 389 (624)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCCccccCccccc-ccccCccCCCCCee------eeChhHHHHHHHHHHHHHc
Confidence 3456789999999999999999998 773 5666766666 667877 9999 9999999999999999 8
Q ss_pred C-CcccCCCCcccccccccccccceee--EeccCCchhhhhHHHhhhhccCCCCccceEEE-ccCCCccc---ccccccc
Q psy8838 100 G-LTVLKNNPTTSAHHSMLLFSSMKCV--GMDKSYSLPPLASTSTSVVLDNPVFNKNVKID-IPLMPFYI---EKIDKLN 172 (319)
Q Consensus 100 G-lr~~~~~PV~~~~~~~~~f~~~~~e--i~~~df~~~aldqi~~~~y~~~g~f~~PvvIr-~P~GP~Ii---e~p~q~~ 172 (319)
| ++ || |+ .+|.+ -+++|+-+..+ .+.|+++. ++.|-.+. ..| |..
T Consensus 390 G~~~-----pv--------------~~t~~~F~~---r~~~qir~~~~-----~~~pv~~v~~~~G~~~g~~G~tH-q~~ 441 (624)
T PRK05899 390 GGFI-----PF--------------GGTFLVFSD---YARNAIRLAAL-----MKLPVIYVFTHDSIGVGEDGPTH-QPV 441 (624)
T ss_pred CCCe-----EE--------------EEEcHHHHH---HHHHHHHHHHh-----cCCCEEEEEECCCcCcCCCCCCc-ccH
Confidence 9 99 99 66 45544 45555543333 24677776 45443333 336 444
Q ss_pred c-----cCCC---cccCCCC-CCCcchhhhhH-----HHHHhhhhhhhhhhHHHh---h--hhHHHHHHHHHhhhHHHHH
Q psy8838 173 E-----RNNS---IIEDPVI-PSQAPEKHAIV-----MIIRRRRKMKKHKLKKLR---I--RMKFEWAKIRQRREMKKEK 233 (319)
Q Consensus 173 E-----~~lP---vv~pp~~-da~~~~~~a~~-----Vl~IRRKKMkKHK~rKlr---k--R~kF~~aKVrr~R~~kke~ 233 (319)
| ..+| |+.|... +.......|.+ ++.+..| .+...+. . --+++. .+-+++.+.+..
T Consensus 442 edia~~r~iP~~~V~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r----~~~~~~~~~~~~~~~~~G~-~~l~~G~dvtii 516 (624)
T PRK05899 442 EQLASLRAIPNLTVIRPADANETAAAWKYALERKDGPSALVLTR----QNLPVLERTAQEEGVAKGG-YVLRDDPDVILI 516 (624)
T ss_pred HHHHHHHhCCCcEEEeCCCHHHHHHHHHHHHHcCCCCEEEEEeC----CCCCCcCCccccccccCCc-EEEecCCCEEEE
Confidence 4 6777 7887776 66666666664 2222221 1111111 0 112233 444557899999
Q ss_pred HHHHHHHHHHHhcccCChhhHHHHHHHHhcccccccc
Q psy8838 234 AFQLEMSTKVKEGERFSAEQYVENKLQLLHAEQLAES 270 (319)
Q Consensus 234 ~Fq~~L~~~lkeAeaf~ae~YV~~~l~~a~~~~~p~~ 270 (319)
+++.++..++++|+.+..+..=.+.+..-.-+|+.+.
T Consensus 517 a~G~~v~~al~Aa~~L~~~gi~~~VId~~sikPlD~~ 553 (624)
T PRK05899 517 ATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQ 553 (624)
T ss_pred EeCHHHHHHHHHHHHHHhcCCcEEEEECCCcchhccC
Confidence 9999999999999876333222223333344444433
No 24
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=98.13 E-value=2.4e-07 Score=89.39 Aligned_cols=205 Identities=11% Similarity=0.088 Sum_probs=142.5
Q ss_pred cccHHHHHHHHHHHHHHhCCCeEE-eeecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cCCcccC
Q psy8838 29 QLTINFPLGSPVWALIADNDSTAI-EEHFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LGLTVLK 105 (319)
Q Consensus 29 ~lt~~~Ai~~al~~~m~~d~~v~i-GE~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~Glr~~~ 105 (319)
..++.++.++.|.++-..|+++++ --+.++ ..-+..+.++| ++|++ |.-|+|+..+|+|.|+ .|.+
T Consensus 6 ~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~-St~~~~f~~~f-PdR~~------NvGIaEQ~mvg~AAGLA~~Gk~--- 74 (312)
T COG3958 6 TESLRKVYGETLAELGRKNSDIVVLDADLSS-STKTGYFAKEF-PDRFF------NVGIAEQDMVGTAAGLALAGKK--- 74 (312)
T ss_pred chHHHHHHHHHHHHHHhcCCCEEEEeccccc-ccchhHHHHhC-chhhe------ecchHHHHHHHHHHHHHhcCCC---
Confidence 457899999999999999999998 434333 34466788899 77999 9999999999999999 8999
Q ss_pred CCCcccccccccccccceeeEeccCCch-hhhhHHHhhhhccCCCCccceEEEccCCCccccc---cccccc----cCCC
Q psy8838 106 NNPTTSAHHSMLLFSSMKCVGMDKSYSL-PPLASTSTSVVLDNPVFNKNVKIDIPLMPFYIEK---IDKLNE----RNNS 177 (319)
Q Consensus 106 ~~PV~~~~~~~~~f~~~~~ei~~~df~~-~aldqi~~~~y~~~g~f~~PvvIr~P~GP~Iie~---p~q~~E----~~lP 177 (319)
|+ ...|.-|.. -++||+-|..-.. ..++-+|...+. =.+++. |+.+.+ +.+|
T Consensus 75 --Pf---------------v~tfa~F~s~Ra~EQir~~iay~--~lnVKiv~t~~G-~t~g~dG~sHq~~EDiaimR~lp 134 (312)
T COG3958 75 --PF---------------VSTFAAFLSRRAWEQIRNSIAYN--NLNVKIVATHAG-VTYGEDGSSHQALEDIAIMRGLP 134 (312)
T ss_pred --ce---------------eechHHHHHHHHHHHHHHHhhhc--cCCeEEEEecCC-cccCCCCccchhHHHHHHHhcCC
Confidence 98 667888877 8999999866333 234444444443 223322 433333 6777
Q ss_pred --cccCCCCCCCcchhhhhHHHHHh--hhhhh--hhhhHHHh-------hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy8838 178 --IIEDPVIPSQAPEKHAIVMIIRR--RRKMK--KHKLKKLR-------IRMKFEWAKIRQRREMKKEKAFQLEMSTKVK 244 (319)
Q Consensus 178 --vv~pp~~da~~~~~~a~~Vl~IR--RKKMk--KHK~rKlr-------kR~kF~~aKVrr~R~~kke~~Fq~~L~~~lk 244 (319)
+|-.|.++ .++..++..- .|.-. |--+.|.. .+=+.+++.+-|.+.|.+..+-+-.+...|+
T Consensus 135 n~~V~~P~D~-----v~~~~i~~~~~~~~GP~Y~Rl~R~~~p~~~~~~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~ 209 (312)
T COG3958 135 NMTVIAPADA-----VETRAILDQIADYKGPVYMRLGRGKVPVVVDEGGYTFEIGKANVLRDGSDLTIIATGVMVAEALE 209 (312)
T ss_pred CceEEccCcH-----HHHHHHHHHHHhcCCCEEEEecCCCCCceecCCCceEeccceeEeecCCceEEEecCcchHHHHH
Confidence 34444443 2233322211 11110 01111111 2224588999999999999999999999999
Q ss_pred hcccCChhhHHHHHHHHhccccccc
Q psy8838 245 EGERFSAEQYVENKLQLLHAEQLAE 269 (319)
Q Consensus 245 eAeaf~ae~YV~~~l~~a~~~~~p~ 269 (319)
+|+.+..+-+=...|+...-+|+++
T Consensus 210 AA~~L~~~GIsa~Vi~m~tIKPiD~ 234 (312)
T COG3958 210 AAEILKKEGISAAVINMFTIKPIDE 234 (312)
T ss_pred HHHHHHhcCCCEEEEecCccCCCCH
Confidence 9999988888888888888888765
No 25
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=96.24 E-value=0.019 Score=60.50 Aligned_cols=222 Identities=15% Similarity=0.124 Sum_probs=140.6
Q ss_pred hhhccccc-ccccccHHHHHHHHHHHHHHhCCCeEE-eeecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHh
Q psy8838 18 IKVGAEII-KSEQLTINFPLGSPVWALIADNDSTAI-EEHFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTIS 95 (319)
Q Consensus 18 ~~~~~~~~-~~~~lt~~~Ai~~al~~~m~~d~~v~i-GE~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~a 95 (319)
+.+|+..- +....+|.+...+.|-+..+.|++++- =-..=+-++. ..+.++| ++|.| |.-|+|+.-+.+|
T Consensus 303 ~~tg~~~~~~~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL-~~F~~~f-P~R~f------DVGIAEQHAVT~A 374 (627)
T COG1154 303 IETGQSKKSKPSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGTGL-VKFSKKF-PDRFF------DVGIAEQHAVTFA 374 (627)
T ss_pred cccCccCCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCh-HHHHHhC-chhhe------ehhhhHHHHHHHH
Confidence 34555322 234578999999999999999999886 3322222232 2367788 58999 9999999999999
Q ss_pred hcc--cCCcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEccCCCccccc----cc
Q psy8838 96 QSA--LGLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPLMPFYIEK----ID 169 (319)
Q Consensus 96 vGa--~Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~P~GP~Iie~----p~ 169 (319)
.|+ .|++ || .-.+.-|.--|+||++...-+. +.||++-+-- .++.|. |+
T Consensus 375 AGlA~~G~k-----Pv---------------vaIYSTFLQRAYDQliHDvaiq----nLPV~faIDR-AGivG~DG~TH~ 429 (627)
T COG1154 375 AGLAAEGMK-----PV---------------VAIYSTFLQRAYDQLIHDVAIQ----NLPVTFAIDR-AGIVGADGPTHQ 429 (627)
T ss_pred HHHHhCCCC-----CE---------------EEEecHHHHHHHHHHHHHHHhc----cCCeEEEEec-CcccCCCCCccc
Confidence 999 8999 99 4567789999999998877654 4666555442 333333 33
Q ss_pred cccc----cCCC--cccCCCCCCCcchhhhhHHHH-----------Hhhhhhhhh-h-hHHHhhhhHHHHHHHHHhhhHH
Q psy8838 170 KLNE----RNNS--IIEDPVIPSQAPEKHAIVMII-----------RRRRKMKKH-K-LKKLRIRMKFEWAKIRQRREMK 230 (319)
Q Consensus 170 q~~E----~~lP--vv~pp~~da~~~~~~a~~Vl~-----------IRRKKMkKH-K-~rKlrkR~kF~~aKVrr~R~~k 230 (319)
-+.. ..+| +++-|... -+|.++|. ||=-+.+=- . ..-..+-.+++...+.+++++.
T Consensus 430 G~fDls~l~~iPnmvi~aP~de-----~el~~ml~ta~~~~~gP~AiRyPrg~~~~~~~~~~~~~~~~Gk~~i~~~G~~v 504 (627)
T COG1154 430 GLFDLSFLRCIPNMVIMAPRDE-----EELRQMLYTALAQDDGPVAIRYPRGNGVGVILTPELEPLEIGKGELLKEGEKV 504 (627)
T ss_pred cHHHHHHHhcCCCcEEecCCCH-----HHHHHHHHHHHhcCCCCeEEEecCCCCCCCCcccccccccccceEEEecCCcE
Confidence 3322 6777 56666652 12222221 111111000 0 0000123355666778889999
Q ss_pred HHHHHHHHHHHHHHhcccCChhhHHHHHHHHhccc-cccccccCCcHHHHHHHHHH
Q psy8838 231 KEKAFQLEMSTKVKEGERFSAEQYVENKLQLLHAE-QLAESWKNVPESFIKEWTER 285 (319)
Q Consensus 231 ke~~Fq~~L~~~lkeAeaf~ae~YV~~~l~~a~~~-~~p~~w~~lp~~~ik~~~~~ 285 (319)
....|+..+..+++.||.+.+.- .+-+ .=|++=+.|.+.++.++..+
T Consensus 505 ail~~G~~~~~al~vae~L~~~G--------i~~TVvd~rfvkPlD~~ll~~La~~ 552 (627)
T COG1154 505 AILAFGTMLPEALKVAEKLNAYG--------ISVTVVDPRFVKPLDEALLLELAKS 552 (627)
T ss_pred EEEecchhhHHHHHHHHHHHhcC--------CCcEEEcCeecCCCCHHHHHHHHhh
Confidence 99999999999999888655321 0111 22555566888888777544
No 26
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=95.83 E-value=0.019 Score=60.12 Aligned_cols=218 Identities=12% Similarity=0.017 Sum_probs=124.5
Q ss_pred ccccHHHHHHHHHHHHHHhCCCeEEee-ecCCcccccc-----chhhhhCcCceeeecCCCCCCcchhHHHHHhhcc---
Q psy8838 28 EQLTINFPLGSPVWALIADNDSTAIEE-HFGQKFNSQR-----GLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--- 98 (319)
Q Consensus 28 ~~lt~~~Ai~~al~~~m~~d~~v~iGE-~~GgvF~~t~-----GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--- 98 (319)
..++..++..++|.++.+.||+++++- ..++. +.+. .+.+.|+ +|.+ |.-|+|+.++|+|.|+
T Consensus 347 ~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s-~~~~~~~~~~f~~~~p-~rfi------~~GIaEq~mv~~AaGlA~~ 418 (653)
T TIGR00232 347 QALATRKYSQNVLNAIANVLPELLGGSADLAPS-NLTKWKGSGDLHENPL-GNYI------HYGVREFAMGAIMNGIALH 418 (653)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCcccc-CCcccccccchhhcCC-CCeE------eecccHHHHHHHHHHHHHc
Confidence 346778899999999999999999854 33332 1111 1567774 5999 9999999999999999
Q ss_pred cCCcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEccC-CCccccc---cccccc-
Q psy8838 99 LGLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPL-MPFYIEK---IDKLNE- 173 (319)
Q Consensus 99 ~Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~P~-GP~Iie~---p~q~~E- 173 (319)
.|++ |+ | ..|.-|+--+.+++-...|+ +.|+++-... |-.+.+. |+.+..
T Consensus 419 gG~~-----p~--------------~-~tf~~F~~r~~~~ir~~a~~-----~lpV~~v~th~g~~~G~dG~THq~iedi 473 (653)
T TIGR00232 419 GGFK-----PY--------------G-GTFLMFVDYARPAIRLAALM-----KLPVIYVYTHDSIGVGEDGPTHQPIEQL 473 (653)
T ss_pred CCCe-----EE--------------E-EEhHHHHHHHHHHHHHHHhc-----CCCEEEEEeCCccCCCCCCcccCCHHHH
Confidence 3688 88 3 45555555556665333333 3577666532 3234443 533222
Q ss_pred ---cCCC---cccCCCC-CCCcchhhhh-H-----HHHHhhhhhhhhhhHHHhhhhHH--HHHHHH-HhhhHHHHHHHHH
Q psy8838 174 ---RNNS---IIEDPVI-PSQAPEKHAI-V-----MIIRRRRKMKKHKLKKLRIRMKF--EWAKIR-QRREMKKEKAFQL 237 (319)
Q Consensus 174 ---~~lP---vv~pp~~-da~~~~~~a~-~-----Vl~IRRKKMkKHK~rKlrkR~kF--~~aKVr-r~R~~kke~~Fq~ 237 (319)
+.+| |+.|... +.......|. + +|..=|..+.-.. .. ....| +...++ +++.+.+..+++.
T Consensus 474 a~lr~iPn~~v~~PaD~~E~~~~~~~a~~~~~gP~~irl~r~~~~~~~-~~--~~~~~~~G~~vl~~~~g~dv~iia~G~ 550 (653)
T TIGR00232 474 ASLRAIPNLSVWRPCDGNETAAAWKYALESQDGPTALILSRQNLPQLE-ES--SLEKVLKGGYVLKDSKGPDIILIATGS 550 (653)
T ss_pred HHHhcCCCCEEEeeCCHHHHHHHHHHHHhcCCCcEEEEEcCCccCCCC-cc--cccccCCCcEEEEecCCCCEEEEEeCh
Confidence 6677 6776665 4443444444 1 2222233332110 00 00111 111121 3467889999999
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHhccccccccccCCcHHHHHHHHHH
Q psy8838 238 EMSTKVKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTER 285 (319)
Q Consensus 238 ~L~~~lkeAeaf~ae~YV~~~l~~a~~~~~p~~w~~lp~~~ik~~~~~ 285 (319)
++..++++|+.+..+..=.+.+..-.-+|+.+- +++++.+.+..
T Consensus 551 ~v~~al~Aa~~L~~~Gi~~~VI~~~~ikpld~~----~~~~~~~~~~~ 594 (653)
T TIGR00232 551 EVSLAVEAAKKLAAENIKVRVVSMPSFDLFDKQ----DEEYRESVLPA 594 (653)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEecccCcccccC----CHHHHHHHhcc
Confidence 999999999877433222223333333333221 34556665543
No 27
>PRK12753 transketolase; Reviewed
Probab=95.78 E-value=0.032 Score=58.65 Aligned_cols=189 Identities=10% Similarity=0.001 Sum_probs=113.4
Q ss_pred cccHHHHHHHHHHHHHHhCCCeEEee-ecCCccccc-----cchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc---c
Q psy8838 29 QLTINFPLGSPVWALIADNDSTAIEE-HFGQKFNSQ-----RGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA---L 99 (319)
Q Consensus 29 ~lt~~~Ai~~al~~~m~~d~~v~iGE-~~GgvF~~t-----~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa---~ 99 (319)
.+...++..++|.++.+.+|++++|- +.++. +.+ ..+.+.|. +|.+ |.-|+|+..+|++.|+ .
T Consensus 354 ~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S-~~~~~~~~~~f~~~~p-~r~i------~~GIaEq~mv~~aaGlA~~~ 425 (663)
T PRK12753 354 KIATRKASQNTLEAYGPLLPELLGGSADLAPS-NLTIWSGSKSLKEDPA-GNYI------HYGVREFGMTAIANGIAHHG 425 (663)
T ss_pred ccHHHHHHHHHHHHHHhhCCCeEEEccccccc-cCcccccccchhhcCC-CCEE------EeeecHHHHHHHHHHHHHhC
Confidence 46678899999999999999998854 33221 111 33556664 5999 9999999999999999 4
Q ss_pred CCcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEE-ccCCCccccc---cccccc--
Q psy8838 100 GLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKID-IPLMPFYIEK---IDKLNE-- 173 (319)
Q Consensus 100 Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr-~P~GP~Iie~---p~q~~E-- 173 (319)
|++ |+ ...|..|+.-++||+-...|+. .||++- +..|-.+.|- |+.+..
T Consensus 426 G~~-----P~---------------~~tf~~F~~r~~~qir~~a~~~-----l~V~~v~thdg~~~G~DG~THq~iedla 480 (663)
T PRK12753 426 GFV-----PY---------------TATFLMFVEYARNAARMAALMK-----ARQIMVYTHDSIGLGEDGPTHQPVEQLA 480 (663)
T ss_pred CCe-----EE---------------EEehHHHHHHHHHHHHHHHhcC-----CCeEEEEeCCCcccCCCCcccccHHHHH
Confidence 789 98 5577778888899987665553 455542 3445555554 433322
Q ss_pred --cCCC---cccCCCC-CCCcchhhhhH------HHHHhhhhhhhhhhHHHhhhhHHHH--HHHHHhh--hHHHHHHHHH
Q psy8838 174 --RNNS---IIEDPVI-PSQAPEKHAIV------MIIRRRRKMKKHKLKKLRIRMKFEW--AKIRQRR--EMKKEKAFQL 237 (319)
Q Consensus 174 --~~lP---vv~pp~~-da~~~~~~a~~------Vl~IRRKKMkKHK~rKlrkR~kF~~--aKVrr~R--~~kke~~Fq~ 237 (319)
+.+| |+.|... +.......|.+ .|..-|....- -+........|.. ..++... .+....+.+.
T Consensus 481 ~lR~iPn~~v~~PaD~~E~~~~~~~al~~~~gP~~irl~R~~~~~-~~~~~~~~~~~~~G~~vl~~~~~~~dv~iia~Gs 559 (663)
T PRK12753 481 SLRLTPNFSTWRPCDQVEAAVAWKLAIERHNGPTALILSRQNLAQ-QERTPEQVKNIARGGYILKDSGGKPDLILIATGS 559 (663)
T ss_pred HHhcCCCCEEEccCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCC-CCCcccchhhccCCcEEEeccCCCCCEEEEEeCH
Confidence 7777 5555543 22212122221 22222332210 0000000112211 1222222 3788899999
Q ss_pred HHHHHHHhcccCCh
Q psy8838 238 EMSTKVKEGERFSA 251 (319)
Q Consensus 238 ~L~~~lkeAeaf~a 251 (319)
++..++++|+.+..
T Consensus 560 ~v~~al~Aa~~L~~ 573 (663)
T PRK12753 560 EVEITLQAAEKLTA 573 (663)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987643
No 28
>PRK12754 transketolase; Reviewed
Probab=95.17 E-value=0.066 Score=56.61 Aligned_cols=221 Identities=9% Similarity=-0.017 Sum_probs=128.2
Q ss_pred cccHHHHHHHHHHHHHHhCCCeEEee-ecCCccc----cccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc---cC
Q psy8838 29 QLTINFPLGSPVWALIADNDSTAIEE-HFGQKFN----SQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA---LG 100 (319)
Q Consensus 29 ~lt~~~Ai~~al~~~m~~d~~v~iGE-~~GgvF~----~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa---~G 100 (319)
.+...++..++|.++-..||++++|- +.++.-. -+.-+.+.|. +|.+ +.-|+|++.+|++.|+ .|
T Consensus 354 ~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~p-~r~i------~~GIaE~~Mv~iaaGlA~~~G 426 (663)
T PRK12754 354 KIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAA-GNYI------HYGVREFGMTAIANGIALHGG 426 (663)
T ss_pred chHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccCC-CCeE------eeccchhhHHHHHhhHHhcCC
Confidence 35677899999999999999999865 3333211 1233446674 5999 9999999999999999 36
Q ss_pred CcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEE-EccCCCccccc-ccc-ccc----
Q psy8838 101 LTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKI-DIPLMPFYIEK-IDK-LNE---- 173 (319)
Q Consensus 101 lr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvI-r~P~GP~Iie~-p~q-~~E---- 173 (319)
++ |+ ...|.-|+--+.+|+-...|+. .|+++ -+..|=.+.|. |++ ..|
T Consensus 427 ~~-----Pf---------------~~tf~~F~~r~~~qir~~a~~~-----l~V~~v~th~gi~~G~DG~THq~iEdla~ 481 (663)
T PRK12754 427 FL-----PY---------------TSTFLMFVEYARNAVRMAALMK-----QRQVMVYTHDSIGLGEDGPTHQPVEQVAS 481 (663)
T ss_pred Ce-----EE---------------EEeeHHHHHHHHHHHHHHHHcC-----CCeEEEEECCccccCCCCCCcccHHHHHH
Confidence 88 88 5677778778888886655552 44433 23334444554 333 333
Q ss_pred -cCCC---cccCCCC-CCCcchhhhhH------HHHHhhhhhhhhhhHHHhhhhHHHH-HHHHHhh---hHHHHHHHHHH
Q psy8838 174 -RNNS---IIEDPVI-PSQAPEKHAIV------MIIRRRRKMKKHKLKKLRIRMKFEW-AKIRQRR---EMKKEKAFQLE 238 (319)
Q Consensus 174 -~~lP---vv~pp~~-da~~~~~~a~~------Vl~IRRKKMkKHK~rKlrkR~kF~~-aKVrr~R---~~kke~~Fq~~ 238 (319)
+.+| |+.|... +.......|.+ .|..-|..+-.--...- ....|.. +.+-+.+ .+....+.+.+
T Consensus 482 lR~iPn~~V~~PaD~~E~~~~~~~a~~~~~gP~yirl~R~~~p~~~~~~~-~~~~~~~G~~vl~~~~~~~dv~iiatGs~ 560 (663)
T PRK12754 482 LRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEE-QLANIARGGYVLKDCAGQPELIFIATGSE 560 (663)
T ss_pred HhcCCCcEEecCCCHHHHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCccc-hhhhcccCcEEEEecCCCCCEEEEEECHH
Confidence 6777 5665554 22111112221 22222333211000000 0112211 1222222 27788889999
Q ss_pred HHHHHHhcccCChhhHHHHHHHHhccccccccccCCcHHHHHHHHHHH
Q psy8838 239 MSTKVKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTERK 286 (319)
Q Consensus 239 L~~~lkeAeaf~ae~YV~~~l~~a~~~~~p~~w~~lp~~~ik~~~~~~ 286 (319)
+..++++|+.+..+-.=...+..-.-+|+.+. |+++.+..|..+
T Consensus 561 v~~Al~Aa~~L~~~Gi~~~Vvs~~s~kp~d~q----~~~y~~~il~~~ 604 (663)
T PRK12754 561 VELAVAAYEKLTAEGVKARVVSMPSTDAFDKQ----DAAYRESVLPKA 604 (663)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEcCccCcCCCC----CHHHHHhcCccc
Confidence 99999999987554443444555555555543 556666666544
No 29
>PTZ00089 transketolase; Provisional
Probab=94.90 E-value=0.085 Score=55.38 Aligned_cols=187 Identities=10% Similarity=-0.029 Sum_probs=112.1
Q ss_pred cccHHHHHHHHHHHHHHhCCCeEEee-ecCCccccc-----cchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc---c
Q psy8838 29 QLTINFPLGSPVWALIADNDSTAIEE-HFGQKFNSQ-----RGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA---L 99 (319)
Q Consensus 29 ~lt~~~Ai~~al~~~m~~d~~v~iGE-~~GgvF~~t-----~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa---~ 99 (319)
.++..++...+|.+.-+.+|.++.|- +..+. ..+ ..+.++|..+|.+ |.-|+|+..+|+|.|+ .
T Consensus 354 ~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s-~~~~~~~~~~f~~~~P~~rfi------~~GIaEq~mv~~AaGlA~~~ 426 (661)
T PTZ00089 354 AIATRKASENVLNPLFQILPELIGGSADLTPS-NLTRPKEANDFTKASPEGRYI------RFGVREHAMCAIMNGIAAHG 426 (661)
T ss_pred chHHHHHHHHHHHHHHhhCCCeEEEECCCCcc-cCcCCcccccccccCCCCCee------eeeecHHHHHHHHHHHHHcC
Confidence 45678899999999999999988754 22211 111 1355667547999 9999999999999999 4
Q ss_pred CCcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEc-cCCCccccc---cccccc--
Q psy8838 100 GLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDI-PLMPFYIEK---IDKLNE-- 173 (319)
Q Consensus 100 Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~-P~GP~Iie~---p~q~~E-- 173 (319)
|++ |+ ...|.-|+--++||+-...|+ +.|+++-. ..|-.+.+- |+.+..
T Consensus 427 G~~-----P~---------------~~tf~~Fl~Ra~dqir~~al~-----~lpV~~v~thdg~~~g~DG~THq~iedia 481 (661)
T PTZ00089 427 GFI-----PF---------------GATFLNFYGYALGAVRLAALS-----HHPVIYVATHDSIGLGEDGPTHQPVETLA 481 (661)
T ss_pred CCe-----EE---------------EEehHHHHHHHHHHHHHHHhc-----CCCeEEEEeCCceecCCCCCCcccHHHHH
Confidence 789 99 667778888899996444444 35555543 223235553 433322
Q ss_pred --cCCC---cccCCCC-CCCcchhhhhH------HHHHhhhhhhhhhhHHHhhhhHHHHH-HHHHh--hhHHHHHHHHHH
Q psy8838 174 --RNNS---IIEDPVI-PSQAPEKHAIV------MIIRRRRKMKKHKLKKLRIRMKFEWA-KIRQR--REMKKEKAFQLE 238 (319)
Q Consensus 174 --~~lP---vv~pp~~-da~~~~~~a~~------Vl~IRRKKMkKHK~rKlrkR~kF~~a-KVrr~--R~~kke~~Fq~~ 238 (319)
+.+| |+.|... +.......|.+ .|..-|....--. .. ......+++ .+++. +.+....+++.+
T Consensus 482 ~lR~iPn~~V~~PaD~~E~~~~l~~al~~~~gP~~irl~R~~~~~~~-~~-~~~~~~~g~~vl~~~~~~~dv~iia~G~~ 559 (661)
T PTZ00089 482 LLRATPNLLVIRPADGTETSGAYALALANAKTPTILCLSRQNTPPLP-GS-SIEGVLKGAYIVVDFTNSPQLILVASGSE 559 (661)
T ss_pred HHhcCCCcEEEecCCHHHHHHHHHHHHHcCCCCEEEEecCCCCCCcC-CC-ccccccCceEEEeccCCCCCEEEEeeCHH
Confidence 6677 5555543 22222222221 2233333221000 00 000011233 23332 368899999999
Q ss_pred HHHHHHhcccC
Q psy8838 239 MSTKVKEGERF 249 (319)
Q Consensus 239 L~~~lkeAeaf 249 (319)
+..++++|+.+
T Consensus 560 v~~Al~Aa~~L 570 (661)
T PTZ00089 560 VSLCVEAAKAL 570 (661)
T ss_pred HHHHHHHHHHH
Confidence 99999999876
No 30
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=94.04 E-value=0.13 Score=42.04 Aligned_cols=91 Identities=11% Similarity=0.074 Sum_probs=60.9
Q ss_pred HHHHHHHhCCCeEE-eeecCCccccccchhhhh--CcCceeeecCCCCCCcchhHHHHHhhcc--cCCcccCCCCccccc
Q psy8838 39 PVWALIADNDSTAI-EEHFGQKFNSQRGLMDGF--SQCQLMAVSLCGHSLIMELVFLTISQSA--LGLTVLKNNPTTSAH 113 (319)
Q Consensus 39 al~~~m~~d~~v~i-GE~~GgvF~~t~GL~~~F--G~~RV~~~~~~~dTPIsE~~ivG~avGa--~Glr~~~~~PV~~~~ 113 (319)
++.+.|.+..-.++ |..-+. ..+|.+.. ++.+.+ .+++.|.+.+|+|.|+ .|.+ |+
T Consensus 2 ~~~~~l~~~gv~~vfg~pg~~----~~~l~~~~~~~~~~~~------~~~~~E~~a~~~A~G~a~~~~~-----~v---- 62 (154)
T cd06586 2 AFAEVLTAWGVRHVFGYPGDE----ISSLLDALREGDKRII------DTVIHELGAAGAAAGYARAGGP-----PV---- 62 (154)
T ss_pred hHHHHHHHcCCCEEEEcCCcc----hHHHHHHHhccCCceE------EeeCCHHHHHHHHHHHHHhhCC-----EE----
Confidence 45566666665555 763111 12233332 245666 7999999999999999 4438 99
Q ss_pred ccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEccCCCc
Q psy8838 114 HSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPLMPF 163 (319)
Q Consensus 114 ~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~P~GP~ 163 (319)
|..++..++..+++++.+ .+.. ..||++.....+.
T Consensus 63 ----------~~~~~gpg~~~~~~~l~~-a~~~----~~Pvl~i~~~~~~ 97 (154)
T cd06586 63 ----------VIVTSGTGLLNAINGLAD-AAAE----HLPVVFLIGARGI 97 (154)
T ss_pred ----------EEEcCCCcHHHHHHHHHH-HHhc----CCCEEEEeCCCCh
Confidence 888888899999998884 4433 2788877755444
No 31
>PLN02790 transketolase
Probab=93.49 E-value=0.25 Score=51.91 Aligned_cols=190 Identities=11% Similarity=-0.039 Sum_probs=104.9
Q ss_pred ccHHHHHHHHHHHHHHhCCCeEEee-ecCCccc----cccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc-c---C
Q psy8838 30 LTINFPLGSPVWALIADNDSTAIEE-HFGQKFN----SQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA-L---G 100 (319)
Q Consensus 30 lt~~~Ai~~al~~~m~~d~~v~iGE-~~GgvF~----~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa-~---G 100 (319)
+...++..++|.++-+.+|+++.|- +..+.-+ ....+.++|-++|.+ |.-|+|+..+++|.|+ . |
T Consensus 344 ~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~p~Rfi------~~GIaEq~mv~~AaGlA~~G~G 417 (654)
T PLN02790 344 DATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTPEERNV------RFGVREHGMGAICNGIALHSSG 417 (654)
T ss_pred hHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCCCCCeE------EeeechHHHHHHHHHHHhcCCC
Confidence 4567788889999999999998866 3322111 123455664467999 9999999999999999 3 6
Q ss_pred CcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEccC-CCccccc---cccccc---
Q psy8838 101 LTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPL-MPFYIEK---IDKLNE--- 173 (319)
Q Consensus 101 lr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~P~-GP~Iie~---p~q~~E--- 173 (319)
++ |+ | ..|.-|+..+.+++-...|+ +.|+++-.-. +-.+.+. |+.+..
T Consensus 418 ~~-----P~--------------~-~tf~~F~~~~~~~ir~~al~-----~lpV~~v~thdg~~~G~DG~THq~iedla~ 472 (654)
T PLN02790 418 LI-----PY--------------C-ATFFVFTDYMRAAMRLSALS-----EAGVIYVMTHDSIGLGEDGPTHQPIEHLAS 472 (654)
T ss_pred cE-----EE--------------E-EecHHHHHHHHHHHHHHHhc-----CCCeEEEEECCceeecCCCCCcccHHHHHH
Confidence 99 99 3 34444443333333222333 3555554411 3234443 333322
Q ss_pred -cCCC---cccCCCC-CCCcchhhhhH------HHHHhhhhhhhhhhHHHhhhhHHHHHHHHHh----hhHHHHHHHHHH
Q psy8838 174 -RNNS---IIEDPVI-PSQAPEKHAIV------MIIRRRRKMKKHKLKKLRIRMKFEWAKIRQR----REMKKEKAFQLE 238 (319)
Q Consensus 174 -~~lP---vv~pp~~-da~~~~~~a~~------Vl~IRRKKMkKHK~rKlrkR~kF~~aKVrr~----R~~kke~~Fq~~ 238 (319)
+.+| |+.|... +.......|.. .|..-|....--- .....--..+...+++. +.+....+++.+
T Consensus 473 lR~iPnl~V~~PaD~~E~~~~l~~al~~~~gP~~irl~R~~~~~~~-~~~~~~~~~G~~vl~~~~~~~~~dv~iia~G~~ 551 (654)
T PLN02790 473 LRAMPNILMLRPADGNETAGAYKVAVTNRKRPTVLALSRQKVPNLP-GTSIEGVEKGGYVISDNSSGNKPDLILIGTGSE 551 (654)
T ss_pred hcCCCCcEEEeCCCHHHHHHHHHHHHHcCCCCEEEEecCCCCCCCC-CCcccccccCcEEEEeCCCCCCCCEEEEEcCHH
Confidence 6677 5555544 22212122211 2222232221100 00000011222233333 267888999999
Q ss_pred HHHHHHhcccCCh
Q psy8838 239 MSTKVKEGERFSA 251 (319)
Q Consensus 239 L~~~lkeAeaf~a 251 (319)
+..++++|+.+..
T Consensus 552 v~~Al~Aa~~L~~ 564 (654)
T PLN02790 552 LEIAAKAAKELRK 564 (654)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987743
No 32
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=88.29 E-value=1.2 Score=49.18 Aligned_cols=186 Identities=7% Similarity=-0.033 Sum_probs=107.9
Q ss_pred ccccHHHHHHHHHHHHHHh---CCCeEE--ee-----ecCCccccc------------------cchhhhhCcCceeeec
Q psy8838 28 EQLTINFPLGSPVWALIAD---NDSTAI--EE-----HFGQKFNSQ------------------RGLMDGFSQCQLMAVS 79 (319)
Q Consensus 28 ~~lt~~~Ai~~al~~~m~~---d~~v~i--GE-----~~GgvF~~t------------------~GL~~~FG~~RV~~~~ 79 (319)
+.++-..|...+|.+++.+ +++|+. +. ..+|-|+.. .-..+.| ++|.+
T Consensus 493 ~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~-PgRf~--- 568 (891)
T PRK09405 493 REISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKESK-DGQIL--- 568 (891)
T ss_pred CcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhhccccccccccccccccccHHHHHHHHcC-CCcEE---
Confidence 5577788999999999986 777776 44 233444321 1233555 78999
Q ss_pred CCCCCCcchhHHHH--Hhhcc--c----CCcccCCCCcccccccccccccceeeEeccCC-chhhhhHHHhhh-hccCCC
Q psy8838 80 LCGHSLIMELVFLT--ISQSA--L----GLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSY-SLPPLASTSTSV-VLDNPV 149 (319)
Q Consensus 80 ~~~dTPIsE~~ivG--~avGa--~----Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df-~~~aldqi~~~~-y~~~g~ 149 (319)
+.-|+|++.+| +|.|+ . |+. |+ .+.|.-| ..-++||+-+.. |+..
T Consensus 569 ---e~GIAEqnmv~~~vAAGlA~a~~G~g~i-----PF---------------~~tya~F~~~Ra~Dqir~a~~~~~~-- 623 (891)
T PRK09405 569 ---QEGINEAGAMASWIAAATSYSTHGEPMI-----PF---------------YIYYSMFGFQRIGDLAWAAGDQRAR-- 623 (891)
T ss_pred ---EechhhhHHHHHHHHHHHhhhhcCCCce-----EE---------------EEehHHhhhhhHHHHHHHHHHhcCC--
Confidence 99999999999 88875 4 667 88 5677777 557889887654 4433
Q ss_pred CccceEE-EccCCCcccc---cccc----ccccCCC---cccCCCCCCCcchhhhhHHHHHhhhhhhhhhh-----HHHh
Q psy8838 150 FNKNVKI-DIPLMPFYIE---KIDK----LNERNNS---IIEDPVIPSQAPEKHAIVMIIRRRRKMKKHKL-----KKLR 213 (319)
Q Consensus 150 f~~PvvI-r~P~GP~Iie---~p~q----~~E~~lP---vv~pp~~da~~~~~~a~~Vl~IRRKKMkKHK~-----rKlr 213 (319)
+++| -++.|-.+.+ .|.+ ..-..+| |++|.-.. ++..++.-=-++|+.+.. -.++
T Consensus 624 ---~v~iggt~gg~tl~~eG~qHqdg~s~~l~raiPn~tv~~PADa~------E~a~iv~~~l~rm~~~~~~~~yYlrl~ 694 (891)
T PRK09405 624 ---GFLLGGTAGRTTLNGEGLQHEDGHSHILASTIPNCVSYDPAFAY------EVAVIVQDGLRRMYGEQENVFYYITVM 694 (891)
T ss_pred ---CeEEEEECccccCCCCcccCCchhhHHHHhhCCCCEEEeCCCHH------HHHHHHHHHHHHHhhcCCCeEEEEEeC
Confidence 3333 3343333222 2443 2226677 56665542 222222222233332210 0000
Q ss_pred ----------hhhHHHHHH----HHHhh-----hHHHHHHHHHHHHHHHHhcccCCh
Q psy8838 214 ----------IRMKFEWAK----IRQRR-----EMKKEKAFQLEMSTKVKEGERFSA 251 (319)
Q Consensus 214 ----------kR~kF~~aK----Vrr~R-----~~kke~~Fq~~L~~~lkeAeaf~a 251 (319)
...+|+--| ++++. .+.....-+..|..+|++|+.+..
T Consensus 695 ne~~~~~~~pe~~~~~igKg~y~Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~ 751 (891)
T PRK09405 695 NENYHQPAMPEGAEEGILKGMYKLETAEGKKGKPKVQLLGSGTILREVLEAAEILAE 751 (891)
T ss_pred CCCCCCCCCCcccccccceEEEEeccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhh
Confidence 011233323 33322 166777889999999999998765
No 33
>KOG0523|consensus
Probab=84.59 E-value=1.4 Score=47.04 Aligned_cols=207 Identities=13% Similarity=0.036 Sum_probs=127.4
Q ss_pred ccHHHHHHHHHHHHHHhCCCeEEee--ecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cCCcccC
Q psy8838 30 LTINFPLGSPVWALIADNDSTAIEE--HFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LGLTVLK 105 (319)
Q Consensus 30 lt~~~Ai~~al~~~m~~d~~v~iGE--~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~Glr~~~ 105 (319)
..+..+-.+||..+=+.||+++.|- -.++.|. .++.+--++|-+ +--|+|+..+|++.|+ -|.+
T Consensus 320 ~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~t---d~~~~~~p~R~i------~~giaEq~mv~ia~G~a~~g~~--- 387 (632)
T KOG0523|consen 320 VATRKAFGEALAALAEADPRVIGGSADLKNSTLT---DFFPKRFPERFI------ECGIAEQNMVGIANGIACRGRT--- 387 (632)
T ss_pred hhHHHHHHHHHHHHhhcCcCeEEEecccCCCchh---hhccccCccceE------EEeeehhhhHHhhhchhcCCCc---
Confidence 6788899999999999999998854 4445444 444444477999 9999999999999999 6774
Q ss_pred CCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEccCCCccccc-ccc-ccc-----cCCC-
Q psy8838 106 NNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPLMPFYIEK-IDK-LNE-----RNNS- 177 (319)
Q Consensus 106 ~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~P~GP~Iie~-p~q-~~E-----~~lP- 177 (319)
+|- ...|..|..-|+||+.-.+-. ...++-+-+=.+-.++|- |+| .-| +.+|
T Consensus 388 -~Pf---------------~~tf~~F~trA~dqvr~~a~s----~~~v~~v~th~~i~~GeDGPth~~iedlA~frsiPn 447 (632)
T KOG0523|consen 388 -IPF---------------CGTFAAFFTRAFDQVRMGALS----QANVIYVATHDSIGLGEDGPTHQPIEDLAMFRSIPN 447 (632)
T ss_pred -cch---------------hHHHHHHHHHhhhheeehhhc----cCCcEEEEEeccccccCCCcccccHHHHHHHHhCCC
Confidence 487 457888999999987433321 112223444456667776 666 233 7777
Q ss_pred -cccCCCCC-CC-cchhhhhH---HHHHhhhhhhhhhhHHHh-----hhhHHHHHH-HHHhhh-HHHHHHHHHHHHHHHH
Q psy8838 178 -IIEDPVIP-SQ-APEKHAIV---MIIRRRRKMKKHKLKKLR-----IRMKFEWAK-IRQRRE-MKKEKAFQLEMSTKVK 244 (319)
Q Consensus 178 -vv~pp~~d-a~-~~~~~a~~---Vl~IRRKKMkKHK~rKlr-----kR~kF~~aK-Vrr~R~-~kke~~Fq~~L~~~lk 244 (319)
++.-|++. +- .....|.+ +-+||+ -.+..+. -....++.| |+++.. +....-++-+|..||+
T Consensus 448 ~~v~~PaD~~et~~av~~Aa~~~~~p~i~~-----~~r~~~~~~~~~~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~ 522 (632)
T KOG0523|consen 448 MIVFRPADGNETENAVATAANTKGTPSIRT-----LSRQNLPIYNNTEIEEIGKGKYVLQEVEPDVILIGTGSEVQECLE 522 (632)
T ss_pred ceEEecCchHHHHHHHHHHHhcCCCeeEEE-----ecCccccccCCCchhhhccccEEEecCCCCEEEEeccHHHHHHHH
Confidence 46666652 11 11112222 111111 0001111 224456666 666666 7888899999999999
Q ss_pred hcccCChhhHHHHHHHHhccccccccccCCcHHHHH
Q psy8838 245 EGERFSAEQYVENKLQLLHAEQLAESWKNVPESFIK 280 (319)
Q Consensus 245 eAeaf~ae~YV~~~l~~a~~~~~p~~w~~lp~~~ik 280 (319)
+|+.++.+. ++- -.-=|.+|+-|.--.|.
T Consensus 523 AA~~L~~~g-i~v------rVvd~~~~kplD~~li~ 551 (632)
T KOG0523|consen 523 AAELLSEDG-IKV------RVVDPFTWKPLDVALIR 551 (632)
T ss_pred HHHHHHhcC-ceE------EEecccceeecchHHhh
Confidence 999776221 110 11237788755444443
No 34
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=73.26 E-value=8.5 Score=42.80 Aligned_cols=126 Identities=7% Similarity=-0.023 Sum_probs=76.3
Q ss_pred ccccHHHHHHHHHHHHHHh---CCCeEE--ee-----ecCCcccccc--------------c----hhhhhCcCceeeec
Q psy8838 28 EQLTINFPLGSPVWALIAD---NDSTAI--EE-----HFGQKFNSQR--------------G----LMDGFSQCQLMAVS 79 (319)
Q Consensus 28 ~~lt~~~Ai~~al~~~m~~---d~~v~i--GE-----~~GgvF~~t~--------------G----L~~~FG~~RV~~~~ 79 (319)
+.++-..|...+|..++.+ +|+++. .. ..+|-|++.. + ..+.| ++|.+
T Consensus 501 ~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~-pgR~i--- 576 (896)
T PRK13012 501 KEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAK-DGQIL--- 576 (896)
T ss_pred CcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhCC-CCcEE---
Confidence 5677888999999999987 888885 33 2344454322 1 22455 57999
Q ss_pred CCCCCCcchhHHHH--Hhhcc--c----CCcccCCCCcccccccccccccceeeEeccCC-chhhhhHHHhhhhccCCCC
Q psy8838 80 LCGHSLIMELVFLT--ISQSA--L----GLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSY-SLPPLASTSTSVVLDNPVF 150 (319)
Q Consensus 80 ~~~dTPIsE~~ivG--~avGa--~----Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df-~~~aldqi~~~~y~~~g~f 150 (319)
+.-|+|++.+| +|+|. . |+. |+ .+.|.-| ..-+.||+-+... .-
T Consensus 577 ---e~GIaEqnm~~~~~AAG~a~a~~G~g~i-----Pf---------------~~tfs~F~~~R~~Dqir~a~~----~~ 629 (896)
T PRK13012 577 ---EEGITEAGAISSWIAAATSYSVHGLPML-----PF---------------YIYYSMFGFQRVGDLIWAAAD----QR 629 (896)
T ss_pred ---ecchhhhhhhHHHHHHHhhHHhcCCCcE-----EE---------------EEehHHHHHHHHHHHHHHHHh----cc
Confidence 99999999977 66665 3 568 88 4444444 3345565544322 22
Q ss_pred ccceEEEccCCCcc-ccc---cccc----cccCCC---cccCCCC
Q psy8838 151 NKNVKIDIPLMPFY-IEK---IDKL----NERNNS---IIEDPVI 184 (319)
Q Consensus 151 ~~PvvIr~P~GP~I-ie~---p~q~----~E~~lP---vv~pp~~ 184 (319)
..+++|-...|... .|- |.+. .-..+| |++|.-.
T Consensus 630 ~~~vlig~T~gg~tlg~dG~THQ~~eslal~RaIPN~~V~~PADa 674 (896)
T PRK13012 630 ARGFLLGATAGRTTLGGEGLQHQDGHSHLLASTIPNCRAYDPAFA 674 (896)
T ss_pred cCCeEEEEeCcccccCCCCCCCcchHhHHHHHhCCCCEEEeCCCH
Confidence 34456666665543 332 4442 226666 6766654
No 35
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=68.90 E-value=17 Score=40.57 Aligned_cols=188 Identities=8% Similarity=-0.008 Sum_probs=103.6
Q ss_pred ccccHHHHHHHHHHHHHHhC---CCeE-E-ee-----ecCCcccc------c--------cch----hhhhCcCceeeec
Q psy8838 28 EQLTINFPLGSPVWALIADN---DSTA-I-EE-----HFGQKFNS------Q--------RGL----MDGFSQCQLMAVS 79 (319)
Q Consensus 28 ~~lt~~~Ai~~al~~~m~~d---~~v~-i-GE-----~~GgvF~~------t--------~GL----~~~FG~~RV~~~~ 79 (319)
++++-..|...+|..++.+- ++++ | +. ..+|-|+. + .+. .+.| ++|.+
T Consensus 488 ~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~~~y~e~~-p~R~i--- 563 (889)
T TIGR03186 488 KEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFRQVGIYSPLGQRYEPEDLGSMLYYREDT-DGQIL--- 563 (889)
T ss_pred CcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchhhhccccccCcccccCCccchHHHHHHhhcC-CCcEE---
Confidence 55667778888877766553 2233 3 33 23444442 1 111 1333 78999
Q ss_pred CCCCCCcchhHHHH--Hhhcc--c----CCcccCCCCcccccccccccccceeeEeccCCc-hhhhhHHHhhhhccCCCC
Q psy8838 80 LCGHSLIMELVFLT--ISQSA--L----GLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYS-LPPLASTSTSVVLDNPVF 150 (319)
Q Consensus 80 ~~~dTPIsE~~ivG--~avGa--~----Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~-~~aldqi~~~~y~~~g~f 150 (319)
+.-|+|++.+| +|.|+ . |+. |+ .+.|.-|. .-++||+-+..|...
T Consensus 564 ---e~GIAEqnmv~~~iAAGlA~a~~G~g~i-----Pf---------------~~tya~F~~~Ra~Dqir~a~~~~a--- 617 (889)
T TIGR03186 564 ---EEGISEAGAISSWIAAATSYSVHDLPML-----PF---------------YIYYSMFGFQRIGDLIWAAADQRA--- 617 (889)
T ss_pred ---EechhhHHHHHHHHHHHHhhhhcCCCce-----EE---------------EEehHHhHhhhHHHHHHHHhhcCC---
Confidence 99999999999 77775 4 668 88 56677774 578888876655431
Q ss_pred ccceEEEccCCC-ccccc---cccccc----cCCC---cccCCCCCCCcchhhhhHHHHHhhhhhhhhhh----------
Q psy8838 151 NKNVKIDIPLMP-FYIEK---IDKLNE----RNNS---IIEDPVIPSQAPEKHAIVMIIRRRRKMKKHKL---------- 209 (319)
Q Consensus 151 ~~PvvIr~P~GP-~Iie~---p~q~~E----~~lP---vv~pp~~da~~~~~~a~~Vl~IRRKKMkKHK~---------- 209 (319)
++-+ |-...|- .+.+- |..... ..+| |++|.-.. ++..++.-==++|+.++.
T Consensus 618 ~v~l-vG~~aG~tTlg~eG~tHq~~eDial~r~iPn~tv~~PaDa~------E~a~iv~~~~~rm~~~~~~gp~YlRl~r 690 (889)
T TIGR03186 618 RGFL-IGATSGKTTLGGEGLQHQDGTSHLAASTVPNCRAWDPAFAY------EVAVIVDEGMREMLERQRDEFYYLTVTN 690 (889)
T ss_pred CcEE-EEECCCccCCCCCcccccchHhHHHHhhCCCCEEEeCCCHH------HHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 2222 3334344 35443 433322 6677 56665442 222222222233444431
Q ss_pred HHH-----hhh--hHHHHHH------HHH---hhhHHHHHHHHHHHHHHHHhcccCChh
Q psy8838 210 KKL-----RIR--MKFEWAK------IRQ---RREMKKEKAFQLEMSTKVKEGERFSAE 252 (319)
Q Consensus 210 rKl-----rkR--~kF~~aK------Vrr---~R~~kke~~Fq~~L~~~lkeAeaf~ae 252 (319)
+.. ... ..|...+ ++. ++.+.....-+..|..+|++|+.+..+
T Consensus 691 ~~~~~p~~~~~~~~~~~~gi~kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~ 749 (889)
T TIGR03186 691 ENYAQPSLPEDRLDAVRRGILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDD 749 (889)
T ss_pred CCCCCCCcCCCcccchhcchhheeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhh
Confidence 111 001 0121111 221 345677788899999999999987654
No 36
>COG3041 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.43 E-value=24 Score=29.62 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhcccCChhhHHHHHHHHhccccccccccC
Q psy8838 233 KAFQLEMSTKVKEGERFSAEQYVENKLQLLHAEQLAESWKN 273 (319)
Q Consensus 233 ~~Fq~~L~~~lkeAeaf~ae~YV~~~l~~a~~~~~p~~w~~ 273 (319)
+.|.+++....+.-. ++.+++++-....++..|+|..++.
T Consensus 8 kqF~kD~k~~~k~~~-~d~~~l~~vi~~L~~~~Pl~~~~kD 47 (91)
T COG3041 8 KQFKKDFKKLIKRGP-LDMDKLKKVITLLANDLPLPPRYKD 47 (91)
T ss_pred hhhhHHHHHHHhcCc-chHHHHHHHHHHHHhCCCCCccccC
Confidence 568999999888877 9999999999999999999998774
No 37
>KOG0451|consensus
Probab=41.26 E-value=41 Score=36.78 Aligned_cols=103 Identities=9% Similarity=0.059 Sum_probs=64.8
Q ss_pred cccccHHHHHHHHHHHHHHhCCCeEE-eeecC-CccccccchhhhhCcCceeeec------C-----CCCCCcchhHHHH
Q psy8838 27 SEQLTINFPLGSPVWALIADNDSTAI-EEHFG-QKFNSQRGLMDGFSQCQLMAVS------L-----CGHSLIMELVFLT 93 (319)
Q Consensus 27 ~~~lt~~~Ai~~al~~~m~~d~~v~i-GE~~G-gvF~~t~GL~~~FG~~RV~~~~------~-----~~dTPIsE~~ivG 93 (319)
...+.+..|=.-|+-.+|...-+|-| ||+-| |.|.-.--++--=.++-.+.|- - -.|+++||.+++|
T Consensus 561 G~kiDWaTAEAlA~GSll~qG~nVRiSGqDVGRGTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAvLG 640 (913)
T KOG0451|consen 561 GVKIDWATAEALAIGSLLYQGHNVRISGQDVGRGTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLG 640 (913)
T ss_pred CCccchHHHHHHHHHHHHhccCceeeeccccCcccccccceeeeeccccceeeeccccCCCcCCeeEeccccccHhhhhh
Confidence 34566777777788889999999999 99433 6664322222111122222110 0 1289999999999
Q ss_pred HhhcccCCcccCCCCcccccccccccccceeeEeccCCch
Q psy8838 94 ISQSALGLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSL 133 (319)
Q Consensus 94 ~avGa~Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~ 133 (319)
+--|+.=-+ =+|+|+-|+||.|+.-| +.|.+.-|+.
T Consensus 641 FEyGmsien-P~~L~iWEAQFGDFfNG---AQIIiDTFi~ 676 (913)
T KOG0451|consen 641 FEYGMSIEN-PNNLIIWEAQFGDFFNG---AQIIIDTFIV 676 (913)
T ss_pred hhcccccCC-cccceeehhhhcccccC---ceEEEeeeec
Confidence 999882111 13568988888887777 6666665543
No 38
>PF15581 Imm35: Immunity protein 35
Probab=38.30 E-value=19 Score=30.24 Aligned_cols=21 Identities=19% Similarity=0.416 Sum_probs=17.4
Q ss_pred ccccccCCcHHHHHHHHHHHH
Q psy8838 267 LAESWKNVPESFIKEWTERKE 287 (319)
Q Consensus 267 ~p~~w~~lp~~~ik~~~~~~~ 287 (319)
|-+.|||||++-+++.|..-.
T Consensus 39 Ie~eWRGl~~~qV~~kl~ava 59 (93)
T PF15581_consen 39 IEHEWRGLPEEQVLYKLEAVA 59 (93)
T ss_pred HHHHHcCCCHHHHHHHHHHHH
Confidence 457899999999999887554
No 39
>PRK05261 putative phosphoketolase; Provisional
Probab=30.88 E-value=25 Score=38.78 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhCCCeEE-ee-------ecCCcccccc-chhhh--------hCcCceeeecCCCCCCcchhHHHHHhhcc
Q psy8838 36 LGSPVWALIADNDSTAI-EE-------HFGQKFNSQR-GLMDG--------FSQCQLMAVSLCGHSLIMELVFLTISQSA 98 (319)
Q Consensus 36 i~~al~~~m~~d~~v~i-GE-------~~GgvF~~t~-GL~~~--------FG~~RV~~~~~~~dTPIsE~~ivG~avGa 98 (319)
++..|.+.+..||+.++ |- ..+++|.+|+ -.+.. --..||+ + .|+|-+..|+..|.
T Consensus 396 ~g~~l~~v~~~np~~frvf~pDe~~SNrl~~~f~~t~r~~~~~~~~~d~~~~~~Grvi------e-~LsEh~~~g~~~Gy 468 (785)
T PRK05261 396 LGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPYDEHLAPDGRVM------E-VLSEHLCEGWLEGY 468 (785)
T ss_pred HHHHHHHHHHhCCCceEEEcCCcchhhccHhHHhhhccccccccCCcccccCCCCCee------e-eecHHHHHHHHHHH
Confidence 99999999999999555 42 3457775433 11111 1136999 6 99999999999996
Q ss_pred --cCCc
Q psy8838 99 --LGLT 102 (319)
Q Consensus 99 --~Glr 102 (319)
+|.+
T Consensus 469 ~LtG~~ 474 (785)
T PRK05261 469 LLTGRH 474 (785)
T ss_pred HhcCCC
Confidence 8888
No 40
>PF02218 HS1_rep: Repeat in HS1/Cortactin; InterPro: IPR003134 The cortactin or HS1 repeat is a tandem repeat of 37-amino acid actin-binding domains. The repeat is named after human cortactin and HS1, proteins involved in cytoskeletal rearrangements implicated in cell migration and apoptosis, respectively. Cortactin contains 6.5 tandem copies of the repeat and is conserved among metazoans, although e.g. insect cortactin and splice variants contain fewer copies. Hematopoietic lineage cell specific protein 1 (HS1) contains 3.5 tandem copies of the cortactin repeat and is mainly expressed in hematopoietic cells. Both cortactin and HS1 contain a C-terminal SH3 domain (IPR001452 from INTERPRO). The cortactin repeat domain binds filamentous actin (F-actin) in proteins that modulate the assembly of the actin cytoskeleton. Secondary structure predictions indicate that the cortactin repeat could exhibit a helix-turn-helix structure [, ].
Probab=28.06 E-value=22 Score=25.46 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=13.2
Q ss_pred cCCccccccchhhhh
Q psy8838 56 FGQKFNSQRGLMDGF 70 (319)
Q Consensus 56 ~GgvF~~t~GL~~~F 70 (319)
|||.|++++.-+|+.
T Consensus 2 fGGKfGVq~Dr~DkS 16 (37)
T PF02218_consen 2 FGGKFGVQKDRQDKS 16 (37)
T ss_pred CCcccceeccccccc
Confidence 899999999888765
No 41
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.01 E-value=48 Score=33.64 Aligned_cols=18 Identities=11% Similarity=0.276 Sum_probs=14.1
Q ss_pred HHHHHHHHHhCCCeEE-ee
Q psy8838 37 GSPVWALIADNDSTAI-EE 54 (319)
Q Consensus 37 ~~al~~~m~~d~~v~i-GE 54 (319)
.+||+.+|+.||+|++ ||
T Consensus 188 ~~aLraALReDPDVIlvGE 206 (353)
T COG2805 188 ANALRAALREDPDVILVGE 206 (353)
T ss_pred HHHHHHHhhcCCCEEEEec
Confidence 3455666778999999 99
No 42
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=25.87 E-value=2e+02 Score=21.82 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=16.2
Q ss_pred cccCChhhHHHHHHHHhcc
Q psy8838 246 GERFSAEQYVENKLQLLHA 264 (319)
Q Consensus 246 Aeaf~ae~YV~~~l~~a~~ 264 (319)
.+.|||+.||++.|.....
T Consensus 3 ~~~fd~~~~~~~~l~~~s~ 21 (87)
T PF08700_consen 3 SENFDVDEYFKDLLKNSSI 21 (87)
T ss_pred CCcCCHHHHHHHHHhhCCH
Confidence 5789999999999987763
No 43
>PRK15322 invasion protein OrgB; Provisional
Probab=25.13 E-value=70 Score=30.45 Aligned_cols=44 Identities=18% Similarity=0.388 Sum_probs=36.9
Q ss_pred cCChhhHHHHHHHHhcccc--ccccccCCcHHHHHHHHHHHHhhhh
Q psy8838 248 RFSAEQYVENKLQLLHAEQ--LAESWKNVPESFIKEWTERKERHRN 291 (319)
Q Consensus 248 af~ae~YV~~~l~~a~~~~--~p~~w~~lp~~~ik~~~~~~~~~~~ 291 (319)
+|||+.||..--..+...+ +|..+|+|++--+.++.++-.+|-+
T Consensus 160 EFsPq~~v~~a~~~l~~~~d~~~~~~r~ls~~~l~al~~~~~~~~~ 205 (210)
T PRK15322 160 EFSPEQFVETAVGVIKHHLDELPQDCRTISDNAINALIDEWKTKTQ 205 (210)
T ss_pred ccCHHHHHHHHHHHHHhCccchHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 4999999987766665554 7999999999999999999887743
No 44
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=22.95 E-value=72 Score=22.33 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=17.6
Q ss_pred cccHHHHHHHHHHHHH-HhCCCeEE--ee
Q psy8838 29 QLTINFPLGSPVWALI-ADNDSTAI--EE 54 (319)
Q Consensus 29 ~lt~~~Ai~~al~~~m-~~d~~v~i--GE 54 (319)
.-.+.++|.+++.+.+ ...+++.+ .|
T Consensus 16 k~~l~~~i~~~l~~~~g~~~~~v~V~i~e 44 (58)
T cd00491 16 KRELIERVTEAVSEILGAPEATIVVIIDE 44 (58)
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 3458888888888888 33444444 66
No 45
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=22.55 E-value=53 Score=32.28 Aligned_cols=16 Identities=50% Similarity=0.559 Sum_probs=11.1
Q ss_pred HHhh-hhhhhh-hhHHHh
Q psy8838 198 IRRR-RKMKKH-KLKKLR 213 (319)
Q Consensus 198 ~IRR-KKMkKH-K~rKlr 213 (319)
.-|| |||+|. +|-||-
T Consensus 280 RYRRKKKmkKKlQYiKLL 297 (299)
T PF02009_consen 280 RYRRKKKMKKKLQYIKLL 297 (299)
T ss_pred HHHHHhhhhHHHHHHHHh
Confidence 3356 899764 888875
No 46
>PHA02739 hypothetical protein; Provisional
Probab=22.51 E-value=76 Score=27.64 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=20.8
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhh
Q psy8838 265 EQLAESWKNVPESFIKEWTERKERHR 290 (319)
Q Consensus 265 ~~~p~~w~~lp~~~ik~~~~~~~~~~ 290 (319)
-.+|+.|+.+|+...+..|-..-+++
T Consensus 5 iiVP~EW~~~p~~tL~~~L~~~i~~~ 30 (116)
T PHA02739 5 LIVPNEWKVLPPATLQTELLRIISAK 30 (116)
T ss_pred EEechhhhhCCHHHHHHHHHHHHHHH
Confidence 35799999999999998887765443
Done!