Query psy8838
Match_columns 319
No_of_seqs 206 out of 1243
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 20:27:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8838.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8838hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ozl_B PDHE1-B, pyruvate dehyd 99.8 2.9E-23 1E-27 194.2 -4.4 226 27-286 12-268 (341)
2 1ik6_A Pyruvate dehydrogenase; 99.8 2.7E-23 9.3E-28 196.7 -6.3 225 27-286 48-298 (369)
3 1qs0_B 2-oxoisovalerate dehydr 99.8 6.3E-23 2.1E-27 189.8 -4.8 226 27-287 2-269 (338)
4 1w85_B Pyruvate dehydrogenase 99.8 7.3E-23 2.5E-27 188.7 -6.0 227 29-287 2-254 (324)
5 1umd_B E1-beta, 2-OXO acid deh 99.8 1E-22 3.5E-27 187.5 -5.8 227 28-286 2-254 (324)
6 2bfd_B 2-oxoisovalerate dehydr 99.8 1.8E-22 6E-27 188.4 -5.5 229 27-287 18-273 (342)
7 2xt6_A 2-oxoglutarate decarbox 99.6 2.7E-17 9.3E-22 175.3 -0.6 187 35-247 761-1013(1113)
8 2yic_A 2-oxoglutarate decarbox 99.6 4E-17 1.4E-21 170.4 -0.2 179 42-247 529-768 (868)
9 2o1x_A 1-deoxy-D-xylulose-5-ph 99.5 1.6E-16 5.3E-21 158.7 -3.5 214 29-285 321-552 (629)
10 2jgd_A 2-oxoglutarate dehydrog 99.5 1.4E-14 4.7E-19 152.5 4.0 155 29-208 590-785 (933)
11 2o1s_A 1-deoxy-D-xylulose-5-ph 99.4 1.4E-13 4.8E-18 137.1 8.3 213 28-285 317-549 (621)
12 3m49_A Transketolase; alpha-be 99.3 1.5E-12 5.1E-17 133.0 3.5 189 28-249 377-598 (690)
13 3kom_A Transketolase; rossmann 99.2 5.8E-12 2E-16 127.9 5.6 188 27-250 352-572 (663)
14 3mos_A Transketolase, TK; thia 99.2 1.7E-11 5.8E-16 123.1 6.2 219 28-286 311-550 (616)
15 2e6k_A Transketolase; structur 99.1 8.7E-12 3E-16 125.6 2.2 187 28-250 347-564 (651)
16 2r8o_A Transketolase 1, TK 1; 99.1 8.6E-11 2.9E-15 118.7 5.8 189 28-250 353-572 (669)
17 1r9j_A Transketolase; domains, 99.1 9.1E-11 3.1E-15 118.9 5.8 190 28-251 350-570 (673)
18 1itz_A Transketolase; calvin c 99.0 2.2E-10 7.4E-15 116.1 6.3 189 28-250 364-585 (675)
19 1gpu_A Transketolase; transfer 99.0 7.6E-11 2.6E-15 119.5 1.4 191 27-250 353-577 (680)
20 3l84_A Transketolase; TKT, str 99.0 1.6E-10 5.5E-15 117.0 3.2 189 28-250 336-548 (632)
21 3uk1_A Transketolase; structur 99.0 3.8E-10 1.3E-14 115.8 5.7 192 28-250 393-620 (711)
22 3rim_A Transketolase, TK; TPP, 98.9 6.5E-10 2.2E-14 114.0 5.3 187 28-249 373-606 (700)
23 2qtc_A Pyruvate dehydrogenase 97.6 3.3E-05 1.1E-09 81.5 5.1 192 28-251 490-747 (886)
24 1yd7_A 2-keto acid:ferredoxin 97.3 0.00015 5.2E-09 69.0 4.1 149 6-195 4-172 (395)
25 2c42_A Pyruvate-ferredoxin oxi 95.9 0.0014 4.8E-08 71.2 -0.0 99 63-193 44-155 (1231)
26 3ahc_A Phosphoketolase, xylulo 78.0 3 0.0001 44.4 6.2 81 33-138 432-534 (845)
27 1hd6_A Pheromone ER-22; NMR {E 35.9 8.1 0.00028 26.5 0.1 18 79-96 16-33 (37)
28 3h4p_a Proteasome subunit beta 26.4 19 0.00065 31.0 0.9 34 269-302 185-218 (219)
29 3g1g_A GAG polyprotein, capsid 24.8 1.3E+02 0.0044 24.0 5.3 53 235-288 17-78 (87)
30 2w7n_A TRFB transcriptional re 21.0 59 0.002 26.0 2.7 23 265-287 65-91 (101)
No 1
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=99.84 E-value=2.9e-23 Score=194.15 Aligned_cols=226 Identities=13% Similarity=0.127 Sum_probs=171.2
Q ss_pred cccccHHHHHHHHHHHHHHhCCCeEE-eee---cCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cC
Q psy8838 27 SEQLTINFPLGSPVWALIADNDSTAI-EEH---FGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LG 100 (319)
Q Consensus 27 ~~~lt~~~Ai~~al~~~m~~d~~v~i-GE~---~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~G 100 (319)
+.++++.+|++++|.++|++||++++ |+. +||+|+.+.+|.++||++|++ |++|+|++++|++.|+ .|
T Consensus 12 ~~~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~------d~gIaE~~~v~~a~G~A~~G 85 (341)
T 2ozl_B 12 SLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRII------DTPISEMGFAGIAVGAAMAG 85 (341)
T ss_dssp CCEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEE------ECCSCHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEE------ECchhHHHHHHHHHHHHHCC
Confidence 35689999999999999999999999 884 469999999999999999999 9999999999999999 89
Q ss_pred CcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhh----hccCCCCccceEEEccCCCccccc---cccccc
Q psy8838 101 LTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSV----VLDNPVFNKNVKIDIPLMPFYIEK---IDKLNE 173 (319)
Q Consensus 101 lr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~----y~~~g~f~~PvvIr~P~GP~Iie~---p~q~~E 173 (319)
++ |+ ++++|.+|+..++||+.+.. ||+||..+.|+|++.|.| ...+. |+|..|
T Consensus 86 ~r-----p~--------------~~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~G-~~g~~G~tHs~~~e 145 (341)
T 2ozl_B 86 LR-----PI--------------CEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNG-ASAGVAAQHSQCFA 145 (341)
T ss_dssp CE-----EE--------------EECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECS-CCSSCCGGGCCCCH
T ss_pred CE-----EE--------------EEeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcCc-CCCCCCcchhhHHH
Confidence 99 99 99999999999999998865 999999999999999974 44433 656545
Q ss_pred ---cCCC---cccCCCC-CCCcchhhhhH----HHHHhhhhhhhhhhHHH----hh---hhHHHHHHHHHhhhHHHHHHH
Q psy8838 174 ---RNNS---IIEDPVI-PSQAPEKHAIV----MIIRRRRKMKKHKLKKL----RI---RMKFEWAKIRQRREMKKEKAF 235 (319)
Q Consensus 174 ---~~lP---vv~pp~~-da~~~~~~a~~----Vl~IRRKKMkKHK~rKl----rk---R~kF~~aKVrr~R~~kke~~F 235 (319)
..+| |+.|.+. +...+...|.+ |+.+..|.+++++ ... .. .-+++.+.+.+++.+.....+
T Consensus 146 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i~~~~~~~~~~-~~v~p~~~~~~~~~~~Gk~~v~~~g~dv~iia~ 224 (341)
T 2ozl_B 146 AWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVP-FEFPPEAQSKDFLIPIGKAKIERQGTHITVVSH 224 (341)
T ss_dssp HHHHTSTTCEEECCCSHHHHHHHHHHHHHSSSCEEEEECHHHHTCE-EECCHHHHSTTCCCCTTCCEEEECCSSEEEEEC
T ss_pred HHhccCCCCEEEEeCCHHHHHHHHHHHHhcCCCEEEEEChhhhcCC-CCcCCccCCccccccCCceEEeccCCCEEEEEe
Confidence 4455 7888776 77777777776 5556666666553 211 11 113344444455667778888
Q ss_pred HHHHHHHHHhcccCChhhHHHHHHHHhccccccccccCCcHHHHHHHHHHH
Q psy8838 236 QLEMSTKVKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTERK 286 (319)
Q Consensus 236 q~~L~~~lkeAeaf~ae~YV~~~l~~a~~~~~p~~w~~lp~~~ik~~~~~~ 286 (319)
+..+..++++|+.+..+-+ .+.--. +++++-+|++.|++.+.+.
T Consensus 225 Gs~~~~a~~Aa~~L~~~Gi------~v~vv~-~~~l~P~d~~~i~~~~~~~ 268 (341)
T 2ozl_B 225 SRPVGHCLEAAAVLSKEGV------ECEVIN-MRTIRPMDMETIEASVMKT 268 (341)
T ss_dssp STHHHHHHHHHHHHHTTTC------CEEEEE-CCEEETCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCC------CeEEEe-eeeecCCCHHHHHHHHhcC
Confidence 9999888888765432210 122222 4455558988888877664
No 2
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=99.83 E-value=2.7e-23 Score=196.75 Aligned_cols=225 Identities=8% Similarity=0.069 Sum_probs=157.7
Q ss_pred cccccHHHHHHHHHHHHHHhCCCeEE-eee---cCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cC
Q psy8838 27 SEQLTINFPLGSPVWALIADNDSTAI-EEH---FGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LG 100 (319)
Q Consensus 27 ~~~lt~~~Ai~~al~~~m~~d~~v~i-GE~---~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~G 100 (319)
|..+++.+|++++|.++|++||++++ |+. .||+|+.+.+|.++||++|++ |++|+|++++|++.|+ .|
T Consensus 48 m~~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~------d~gIaE~~~v~~a~G~A~~G 121 (369)
T 1ik6_A 48 VMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVI------DTPLNEGGILGFAMGMAMAG 121 (369)
T ss_dssp EEEECHHHHHHHHHHHHHHHCTTEEEEEC---------CTTTTHHHHHCTTTEE------ECCSCHHHHHHHHHHHHHTT
T ss_pred cCcccHHHHHHHHHHHHHccCCCEEEECCcccccCCcchhHHHHHHHhCCCcEE------ECcccHHHHHHHHHHHHHCC
Confidence 35689999999999999999999999 884 569999999999999999999 9999999999999999 89
Q ss_pred CcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhh----hhccCCCCccceEEEccCCCccccc--cccccc-
Q psy8838 101 LTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTS----VVLDNPVFNKNVKIDIPLMPFYIEK--IDKLNE- 173 (319)
Q Consensus 101 lr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~----~y~~~g~f~~PvvIr~P~GP~Iie~--p~q~~E- 173 (319)
++ |+ ++++|.+|+..++||+.++ .|+++|+++.|+|++.|.++...+- |++..+
T Consensus 122 ~r-----pv--------------~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g~g~~hs~~~~a 182 (369)
T 1ik6_A 122 LK-----PV--------------AEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHSNSPEA 182 (369)
T ss_dssp CE-----EE--------------EECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC-----------HHH
T ss_pred Ce-----eE--------------EEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCCCCccccccHHH
Confidence 99 99 9999999999999999774 4999999999999999988765543 333333
Q ss_pred --cCCC---cccCCCC-CCCcchhhhhH----HHHHhhhhhhhhhhHHHh---hhhHHHHHHHHHhhhHHHHHHHHHHHH
Q psy8838 174 --RNNS---IIEDPVI-PSQAPEKHAIV----MIIRRRRKMKKHKLKKLR---IRMKFEWAKIRQRREMKKEKAFQLEMS 240 (319)
Q Consensus 174 --~~lP---vv~pp~~-da~~~~~~a~~----Vl~IRRKKMkKHK~rKlr---kR~kF~~aKVrr~R~~kke~~Fq~~L~ 240 (319)
..+| |+.|.+. +...++..|++ |+.+.+|.+.++....+. ..-+++.+.+.+++.+.....++..+.
T Consensus 183 ~l~~iPnl~V~~Psd~~e~~~ll~~A~~~~~Pv~i~~p~~l~r~~~~~v~~~~~~~~~G~~~v~~~g~dv~Iia~G~~v~ 262 (369)
T 1ik6_A 183 IFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILYRAPREEVPEGDYVVEIGKARVAREGDDVTLVTYGAVVH 262 (369)
T ss_dssp HHHTCTTCEEECCCSHHHHHHHHHHHHHSSSCEEEEEEGGGSSCCCEEEECSSCCCCTTCCEEEECCSSEEEEECTTHHH
T ss_pred HHcCCCCcEEEecCCHHHHHHHHHHHHhCCCCEEEEEehhhhccCCCCcCCCcccccCCceEEEEcCCCEEEEEeCHHHH
Confidence 4555 7777776 77677777776 666667777766322221 112344444555678888999999999
Q ss_pred HHHHhcccCChhhHHHHHHHHhccccccccccCCcHHHHHHHHHHH
Q psy8838 241 TKVKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTERK 286 (319)
Q Consensus 241 ~~lkeAeaf~ae~YV~~~l~~a~~~~~p~~w~~lp~~~ik~~~~~~ 286 (319)
.++++|+.+. + .+.-- =+++++-+|++.|++.+.+.
T Consensus 263 ~a~~Aa~~L~------G---~v~Vi-~~~~l~P~d~~~i~~~~~~~ 298 (369)
T 1ik6_A 263 KALEAAERVK------A---SVEVV-DLQTLNPLDFDTVLKSVSKT 298 (369)
T ss_dssp HHHHHHHTSS------S---CEEEE-ECCEEETTCHHHHHHHHHHH
T ss_pred HHHHHHHHhC------C---CeEEE-eeeecCCCCHHHHHHHHhcc
Confidence 9999998874 1 12222 25566668888888777654
No 3
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=99.83 E-value=6.3e-23 Score=189.84 Aligned_cols=226 Identities=12% Similarity=0.115 Sum_probs=171.5
Q ss_pred cccccHHHHHHHHHHHHHHhCCCeEE-ee---ecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cC
Q psy8838 27 SEQLTINFPLGSPVWALIADNDSTAI-EE---HFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LG 100 (319)
Q Consensus 27 ~~~lt~~~Ai~~al~~~m~~d~~v~i-GE---~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~G 100 (319)
|.++++.+|++++|.++|++||++++ |+ ..||+|+.+.+|.++||++|++ |++|+|.+++|++.|+ .|
T Consensus 2 ~~~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~------~~gisE~~~~~~a~G~A~~G 75 (338)
T 1qs0_B 2 TTTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVF------DAPISESGIVGTAVGMGAYG 75 (338)
T ss_dssp EEECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEE------ECCSCHHHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEE------EccccHHHHHHHHHHHHhCC
Confidence 45688999999999999999999999 88 3789999999999999999999 9999999999999999 89
Q ss_pred CcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhh----hccCCCCccceEEEccCCCccccc-ccc-ccc-
Q psy8838 101 LTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSV----VLDNPVFNKNVKIDIPLMPFYIEK-IDK-LNE- 173 (319)
Q Consensus 101 lr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~----y~~~g~f~~PvvIr~P~GP~Iie~-p~q-~~E- 173 (319)
+| |+ +++||.+|+..++||+.+.. |++||+++.|+|+..|.+++--+. |+. ..+
T Consensus 76 ~r-----p~--------------~~~t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g~~~G~th~s~~d~~ 136 (338)
T 1qs0_B 76 LR-----PV--------------VEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIYGGQTHSQSPEA 136 (338)
T ss_dssp CE-----EE--------------EECSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECCSSSCCSSSSCCCHH
T ss_pred CE-----EE--------------EEeccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCCCCCCcccccccHHH
Confidence 99 99 89999999999999998643 999999999999999987643333 222 222
Q ss_pred --cCCC---cccCCCC-CCCcchhhhhH----HHHHhhhhhhhhhhH----------------HHh---hhhHHHHHHHH
Q psy8838 174 --RNNS---IIEDPVI-PSQAPEKHAIV----MIIRRRRKMKKHKLK----------------KLR---IRMKFEWAKIR 224 (319)
Q Consensus 174 --~~lP---vv~pp~~-da~~~~~~a~~----Vl~IRRKKMkKHK~r----------------Klr---kR~kF~~aKVr 224 (319)
..+| |+.|.+. +...+...|.+ |+...++.+.++... .+. ...+++++.+.
T Consensus 137 ~l~~iP~l~V~~Psd~~e~~~~l~~A~~~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~ 216 (338)
T 1qs0_B 137 MFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAIT 216 (338)
T ss_dssp HHTTSTTCEEECCCSHHHHHHHHHHHHHSSSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEESSCCCCCTTCCCEE
T ss_pred HHhcCCCCEEEeeCCHHHHHHHHHHHHhcCCcEEEEEchHhhcCcccccccCccchhhcccccccCCCCcccccCceeEe
Confidence 4445 7888886 77777777776 555566666665422 121 11234444444
Q ss_pred HhhhHHHHHHHHHHHHHHHHhcccCChhhHHHHHHHHhccccccccccCCcHHHHHHHHHHHH
Q psy8838 225 QRREMKKEKAFQLEMSTKVKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTERKE 287 (319)
Q Consensus 225 r~R~~kke~~Fq~~L~~~lkeAeaf~ae~YV~~~l~~a~~~~~p~~w~~lp~~~ik~~~~~~~ 287 (319)
+++.+.....++..+..++++|+. ++ + .+.--. +++++-+|.+.|++.+.+..
T Consensus 217 ~~g~dv~iva~G~~~~~a~~Aa~~-------~G-i-~v~vi~-~~~l~P~d~~~i~~~~~~~~ 269 (338)
T 1qs0_B 217 RPGNDVSVLTYGTTVYVAQVAAEE-------SG-V-DAEVID-LRSLWPLDLDTIVESVKKTG 269 (338)
T ss_dssp ECCSSCEEEECTTHHHHHHHHHHH-------HC-C-CCEEEE-CSEEESCCHHHHHHHHHHHS
T ss_pred cCCCCEEEEEeCHHHHHHHHHHHH-------cC-C-CEEEEe-ecccCCCCHHHHHHHHhcCC
Confidence 566788888999999999998876 11 1 122222 45555599998888876543
No 4
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=99.82 E-value=7.3e-23 Score=188.74 Aligned_cols=227 Identities=12% Similarity=0.078 Sum_probs=169.5
Q ss_pred cccHHHHHHHHHHHHHHhCCCeEE-ee---ecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cCCc
Q psy8838 29 QLTINFPLGSPVWALIADNDSTAI-EE---HFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LGLT 102 (319)
Q Consensus 29 ~lt~~~Ai~~al~~~m~~d~~v~i-GE---~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~Glr 102 (319)
++++.+|++++|.++|++||++++ |+ ..||+|+.+.+|.++||++|++ |++|+|++++|++.|+ .|+|
T Consensus 2 ~~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~------~~gIaE~~~v~~a~G~A~~G~r 75 (324)
T 1w85_B 2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVF------DTPLAESGIGGLAIGLALQGFR 75 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEE------ECCSCHHHHHHHHHHHHHTTCE
T ss_pred cchHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEE------EcchhHHHHHHHHHHHHhCCCE
Confidence 468999999999999999999999 88 3679999999999999999999 9999999999999999 8999
Q ss_pred ccCCCCcccccccccccccceeeEeccCCchhhhhHHHhh----hhccCCCCccceEEEccCCCccccc--cccccc---
Q psy8838 103 VLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTS----VVLDNPVFNKNVKIDIPLMPFYIEK--IDKLNE--- 173 (319)
Q Consensus 103 ~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~----~y~~~g~f~~PvvIr~P~GP~Iie~--p~q~~E--- 173 (319)
|+ ++++|.+|+..++||+.+. +|+++|..+.|+|+..|.|...-+. |++..+
T Consensus 76 -----p~--------------~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~g~~~~~g~~hs~~~~a~~ 136 (324)
T 1w85_B 76 -----PV--------------PEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTPELHSDSLEGLV 136 (324)
T ss_dssp -----EE--------------EBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEECSSSCCCTTSSCCCHHHH
T ss_pred -----EE--------------EEecchhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEeccCCCCCCCcccccHHHHH
Confidence 99 8899999999999999763 4899999999999998754322222 444222
Q ss_pred cCCC---cccCCCC-CCCcchhhhhH----HHHHhhhhhhhhhhHHHhh---hhHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy8838 174 RNNS---IIEDPVI-PSQAPEKHAIV----MIIRRRRKMKKHKLKKLRI---RMKFEWAKIRQRREMKKEKAFQLEMSTK 242 (319)
Q Consensus 174 ~~lP---vv~pp~~-da~~~~~~a~~----Vl~IRRKKMkKHK~rKlrk---R~kF~~aKVrr~R~~kke~~Fq~~L~~~ 242 (319)
..+| |+.|.+. +.......|.+ |+.+.+|.+.++....+.. .-+++++.+.+++.+.....++..+..+
T Consensus 137 ~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a 216 (324)
T 1w85_B 137 AQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRSFRQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHES 216 (324)
T ss_dssp TTSTTCEEECCSSHHHHHHHHHHHHHSSSCEEEEEETTTSSSCCEECCSSCCCCCTTCCEEEECCSSEEEEECTTHHHHH
T ss_pred ccCCCCEEEeeCCHHHHHHHHHHHHHcCCCEEEEechHhcCCCCCCCCCccccccCCceEEEecCCCEEEEEecHHHHHH
Confidence 4455 7777776 77777777775 6666677776653222211 1123434444556788888999999999
Q ss_pred HHhcccCChhhHHHHHHHHhccccccccccCCcHHHHHHHHHHHH
Q psy8838 243 VKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTERKE 287 (319)
Q Consensus 243 lkeAeaf~ae~YV~~~l~~a~~~~~p~~w~~lp~~~ik~~~~~~~ 287 (319)
+++|+.+..+-. .+.--. +++++-+|++.|++.+.+..
T Consensus 217 ~~Aa~~L~~~Gi------~v~vi~-~~~l~P~d~~~i~~~~~~~~ 254 (324)
T 1w85_B 217 LKAAAELEKEGI------SAEVVD-LRTVQPLDIETIIGSVEKTG 254 (324)
T ss_dssp HHHHHHHHHTTC------CEEEEE-CSEEESCCHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCC------CEEEEE-eeeecCCCHHHHHHHHhhCC
Confidence 998876543311 122222 45555599988888877653
No 5
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=99.82 E-value=1e-22 Score=187.46 Aligned_cols=227 Identities=11% Similarity=0.098 Sum_probs=170.4
Q ss_pred ccccHHHHHHHHHHHHHHhCCCeEE-ee---ecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cCC
Q psy8838 28 EQLTINFPLGSPVWALIADNDSTAI-EE---HFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LGL 101 (319)
Q Consensus 28 ~~lt~~~Ai~~al~~~m~~d~~v~i-GE---~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~Gl 101 (319)
+.+++.+|++++|.+++++||++++ |+ ..||+|+.+.+|.++||++|++ |++|+|++++|++.|+ .|+
T Consensus 2 ~~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~------~~gIaE~~~v~~a~G~A~~G~ 75 (324)
T 1umd_B 2 ALMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVM------DTPLSEAAIVGAALGMAAHGL 75 (324)
T ss_dssp CEECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEE------ECCSCHHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHHhcCCCEEEECCcccccCCcchhhHHHHHHhCCCcEE------ECchhHHHHHHHHHHHHHCCC
Confidence 4678999999999999999999999 88 3689999999999999999999 9999999999999999 899
Q ss_pred cccCCCCcccccccccccccceeeEeccCCchhhhhHHHhh----hhccCCCCccceEEEccCCCccccc--cccccc--
Q psy8838 102 TVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTS----VVLDNPVFNKNVKIDIPLMPFYIEK--IDKLNE-- 173 (319)
Q Consensus 102 r~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~----~y~~~g~f~~PvvIr~P~GP~Iie~--p~q~~E-- 173 (319)
+ |+ ++++|.+|+..++||+.++ .|+++|..+.|+|+..|.|...-+- |++..+
T Consensus 76 ~-----p~--------------~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~g~~~~~g~~hs~~~~a~ 136 (324)
T 1umd_B 76 R-----PV--------------AEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPEAH 136 (324)
T ss_dssp E-----EE--------------EECSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEECSSSSCGGGSSCCCHHH
T ss_pred E-----EE--------------EEeccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEcCCCCCCCCCccchhHHHH
Confidence 9 99 8899999999999999763 3899999999999998854322222 444222
Q ss_pred -cCCC---cccCCCC-CCCcchhhhhH----HHHHhhhhhhhhhhHHHhh---hhHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy8838 174 -RNNS---IIEDPVI-PSQAPEKHAIV----MIIRRRRKMKKHKLKKLRI---RMKFEWAKIRQRREMKKEKAFQLEMST 241 (319)
Q Consensus 174 -~~lP---vv~pp~~-da~~~~~~a~~----Vl~IRRKKMkKHK~rKlrk---R~kF~~aKVrr~R~~kke~~Fq~~L~~ 241 (319)
..+| |+.|.+. +.......|.+ |+.+.+|.+.++....+.. .-+++.+.+.+++.+.....++..+..
T Consensus 137 ~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~p~~l~~~~~~~~~~~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~ 216 (324)
T 1umd_B 137 FVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKEEVPEEDYTLPIGKAALRREGKDLTLICYGTVMPE 216 (324)
T ss_dssp HHTSTTCEEEECCSHHHHHHHHHHHHHCSSCEEEEEEGGGSSSCCEECCSSCCCCCTTCCEEEECCSSEEEEECGGGHHH
T ss_pred HhcCCCCEEEEeCCHHHHHHHHHHHHhcCCCEEEEechHhcCCCCCCcCCCCccccCCcceEEecCCCEEEEEecHHHHH
Confidence 4555 7888876 77777777776 6666677776663222221 123343334445677888899999999
Q ss_pred HHHhcccCChhhHHHHHHHHhccccccccccCCcHHHHHHHHHHH
Q psy8838 242 KVKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTERK 286 (319)
Q Consensus 242 ~lkeAeaf~ae~YV~~~l~~a~~~~~p~~w~~lp~~~ik~~~~~~ 286 (319)
++++|+.+..+-. .+.- .=+++++-+|++.|++.+.+.
T Consensus 217 a~~Aa~~L~~~Gi------~v~v-i~~~~l~P~d~~~i~~~~~~~ 254 (324)
T 1umd_B 217 VLQAAAELAKAGV------SAEV-LDLRTLMPWDYEAVMNSVAKT 254 (324)
T ss_dssp HHHHHHHHHHTTC------CEEE-EECCEEETCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC------CEEE-EEeceecCCCHHHHHHHHhcC
Confidence 9998876543311 1122 224555559988888877664
No 6
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=99.81 E-value=1.8e-22 Score=188.37 Aligned_cols=229 Identities=12% Similarity=0.079 Sum_probs=172.1
Q ss_pred cccccHHHHHHHHHHHHHHhCCCeEE-ee--ecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cCC
Q psy8838 27 SEQLTINFPLGSPVWALIADNDSTAI-EE--HFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LGL 101 (319)
Q Consensus 27 ~~~lt~~~Ai~~al~~~m~~d~~v~i-GE--~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~Gl 101 (319)
+..+++.+|++++|.++|++||++++ |+ ..||+|+.+.+|.++||++|++ |++|+|++++|++.|+ .|+
T Consensus 18 ~~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~~gt~~~~~~~~~~~gp~r~~------~~gIaE~~~v~~a~G~A~~G~ 91 (342)
T 2bfd_B 18 TQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVF------NTPLCEQGIVGFGIGIAVTGA 91 (342)
T ss_dssp EEEECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTSTTTTHHHHHCTTTEE------ECCSCHHHHHHHHHHHHHTTC
T ss_pred cCCccHHHHHHHHHHHHHhcCCCEEEEcCccCCCcccchHHHHHHHhCCCeEE------EcCcCHHHHHHHHHHHHHCCC
Confidence 56789999999999999999999999 88 4578999999999999999999 9999999999999999 899
Q ss_pred cccCCCCcccccccccccccceeeEeccCCchhhhhHHHhh----hhccCCCCcc-ceEEEccCCCccccc-ccc-ccc-
Q psy8838 102 TVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTS----VVLDNPVFNK-NVKIDIPLMPFYIEK-IDK-LNE- 173 (319)
Q Consensus 102 r~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~----~y~~~g~f~~-PvvIr~P~GP~Iie~-p~q-~~E- 173 (319)
| |+ +++||.+|+..++||+.+. .|+++|++++ |+|++.|.++..-+. |+. ..+
T Consensus 92 r-----p~--------------~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~~~G~th~~~~d~~ 152 (342)
T 2bfd_B 92 T-----AI--------------AEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEA 152 (342)
T ss_dssp C-----EE--------------EECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCCSSCGGGSSCCCHH
T ss_pred e-----eE--------------EEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCCCCCcchhhHhHHH
Confidence 9 99 8899999999999999753 3899999999 999999986443232 222 222
Q ss_pred --cCCC---cccCCCC-CCCcchhhhhH----HHHHhhhhhhhhhhHHHhh---hhHHHHHHHHHhhhHHHHHHHHHHHH
Q psy8838 174 --RNNS---IIEDPVI-PSQAPEKHAIV----MIIRRRRKMKKHKLKKLRI---RMKFEWAKIRQRREMKKEKAFQLEMS 240 (319)
Q Consensus 174 --~~lP---vv~pp~~-da~~~~~~a~~----Vl~IRRKKMkKHK~rKlrk---R~kF~~aKVrr~R~~kke~~Fq~~L~ 240 (319)
..+| |+.|.+. +.......|.+ |+...+|.+.++....+.. .-+++.+.+.+++.+.....++..+.
T Consensus 153 ~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~G~~~v~~~g~dv~iia~G~~~~ 232 (342)
T 2bfd_B 153 FFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVH 232 (342)
T ss_dssp HHHTSTTCEEECCSSHHHHHHHHHHHHHSSSCEEEEEEGGGTTSCCEEEESSCCCCCSSCCEEEECCSSEEEEECTTHHH
T ss_pred HHhcCCCcEEEeeCCHHHHHHHHHHHHhcCCcEEEEecchhcCCCCCCCCCcccceeCCceEEeccCCCEEEEEECHHHH
Confidence 4555 7777776 77777777775 6666677777664222221 11233333444567788889999999
Q ss_pred HHHHhcccCChh-hHHHHHHHHhccccccccccCCcHHHHHHHHHHHH
Q psy8838 241 TKVKEGERFSAE-QYVENKLQLLHAEQLAESWKNVPESFIKEWTERKE 287 (319)
Q Consensus 241 ~~lkeAeaf~ae-~YV~~~l~~a~~~~~p~~w~~lp~~~ik~~~~~~~ 287 (319)
.++++|+.+..+ -+ .+.- .=+++++-+|++.|++.+.+..
T Consensus 233 ~a~~Aa~~L~~~~Gi------~v~v-i~~~~l~P~d~~~i~~~~~~~~ 273 (342)
T 2bfd_B 233 VIREVASMAKEKLGV------SCEV-IDLRTIIPWDVDTICKSVIKTG 273 (342)
T ss_dssp HHHHHHHHHHHHHCC------CEEE-EECCEEESCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhcCC------CEEE-EeeeecCCCCHHHHHHHHhcCC
Confidence 999998776443 10 1122 2245566699888888876543
No 7
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=99.62 E-value=2.7e-17 Score=175.32 Aligned_cols=187 Identities=11% Similarity=-0.025 Sum_probs=139.2
Q ss_pred HHHHHHHHH------HHhCCCeEE-ee-----ec------------CCccccccch------hhhhCcCceeeecCCCCC
Q psy8838 35 PLGSPVWAL------IADNDSTAI-EE-----HF------------GQKFNSQRGL------MDGFSQCQLMAVSLCGHS 84 (319)
Q Consensus 35 Ai~~al~~~------m~~d~~v~i-GE-----~~------------GgvF~~t~GL------~~~FG~~RV~~~~~~~dT 84 (319)
+|+.|+.++ |++|++|++ || .| ||+|..+.|| .++||++||+ ||
T Consensus 761 ~i~~a~~e~la~~~ll~~~~~V~l~GeDv~rgtfs~rh~v~~d~~~g~~~~~l~~l~~~~~~~~~~~p~rv~------ds 834 (1113)
T 2xt6_A 761 RIDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVY------NS 834 (1113)
T ss_dssp CBCHHHHHHHHHHHHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEE------EC
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEcccCCCccchhcchheecccCCceecchhccccccccchhcCCcEEE------EC
Confidence 456666666 999999999 99 24 8999999999 8999999999 99
Q ss_pred CcchhHHHHHhhcc--cCCcccCCCCcccccccccccccceeeEeccCCchhh---hhHHHhhh-hccCCCCccceEEEc
Q psy8838 85 LIMELVFLTISQSA--LGLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPP---LASTSTSV-VLDNPVFNKNVKIDI 158 (319)
Q Consensus 85 PIsE~~ivG~avGa--~Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~a---ldqi~~~~-y~~~g~f~~PvvIr~ 158 (319)
||||++++|++.|+ .|.+ -.|| +|+||.||+..+ +||++++. +++++ ++|||+++
T Consensus 835 ~IsE~~~vg~a~G~A~~G~~---~~~i--------------~Eaqf~dF~~~aQ~~~DQ~i~~~~~k~~~--~~~vv~~l 895 (1113)
T 2xt6_A 835 ALSEFAAVGFEYGYSVGNPD---AMVL--------------WEAQFGDFVNGAQSIIDEFISSGEAKWGQ--LSDVVLLL 895 (1113)
T ss_dssp CSCSHHHHHHHHHHHHHCTT---SEEE--------------EECSSGGGGGGGHHHHHHTTTTHHHHHCC--CCCCEEEE
T ss_pred CCCHHHHHHHHHHHHhcCCC---CceE--------------EEEEEHHHHhhhHHHHHHHHHHHHHHhCC--CCCEEEEe
Confidence 99999999999999 7844 0168 899999999999 99998865 55555 78999999
Q ss_pred cCCCc-cccccccc-cc-----cCCC---cccCCCC-CCCcchhhhhH------HHHHhhhhhhhhhhHH--Hh------
Q psy8838 159 PLMPF-YIEKIDKL-NE-----RNNS---IIEDPVI-PSQAPEKHAIV------MIIRRRRKMKKHKLKK--LR------ 213 (319)
Q Consensus 159 P~GP~-Iie~p~q~-~E-----~~lP---vv~pp~~-da~~~~~~a~~------Vl~IRRKKMkKHK~rK--lr------ 213 (319)
|.|.. -+.-|+++ .| ...| |+.|.++ +...++..|+. |+++.+|.|++|+... +.
T Consensus 896 p~G~~G~G~~Hs~~~~E~~l~l~~~pnm~V~~Ps~~~~~~~lLr~a~~~~~~~Pvii~~pk~L~R~~~~~~~~~~~~~~~ 975 (1113)
T 2xt6_A 896 PHGHEGQGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESK 975 (1113)
T ss_dssp ECCCSSSCTTSSCCCHHHHHHHCCTTSCEEECCSSHHHHHHHHHHHHHSSCCCCEEEEECSGGGSCSSSCBCHHHHHSCC
T ss_pred CCCCCCCChhhhcccHHHHHhcCCCCCcEEEecCCHHHHHHHHHHHHhccCCCCEEEEechHHhCCCCCCCcccccCCCC
Confidence 98751 12226664 45 4456 6777776 76677776543 8889999999998421 10
Q ss_pred hhhHHHHHHH---HHhhhHH--HHHHHHHHHHHHHHhcc
Q psy8838 214 IRMKFEWAKI---RQRREMK--KEKAFQLEMSTKVKEGE 247 (319)
Q Consensus 214 kR~kF~~aKV---rr~R~~k--ke~~Fq~~L~~~lkeAe 247 (319)
-+..++.+++ .+++++. ....+++. ..+|.+|+
T Consensus 976 f~~~ig~~~~~~~l~~g~dv~r~iv~~G~~-~~~l~aa~ 1013 (1113)
T 2xt6_A 976 FRSVLEEPMYTDGEGDRNKVTRLLLTSGKI-YYELAARK 1013 (1113)
T ss_dssp CCSEECCHHHHTSCCCSTTCCEEEEECSTH-HHHHHHHH
T ss_pred ccccCCcceeeccccCccccCEEEEEECHH-HHHHHHHH
Confidence 1113455665 3456666 67788886 66666655
No 8
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=99.61 E-value=4e-17 Score=170.38 Aligned_cols=179 Identities=12% Similarity=-0.004 Sum_probs=132.9
Q ss_pred HHHHhCCCeEE-ee---e--c------------CCccccccch------hhhhCcCceeeecCCCCCCcchhHHHHHhhc
Q psy8838 42 ALIADNDSTAI-EE---H--F------------GQKFNSQRGL------MDGFSQCQLMAVSLCGHSLIMELVFLTISQS 97 (319)
Q Consensus 42 ~~m~~d~~v~i-GE---~--~------------GgvF~~t~GL------~~~FG~~RV~~~~~~~dTPIsE~~ivG~avG 97 (319)
.+|++|++|++ || . | ||+|..+.|| .++||++||+ ||||||++++|++.|
T Consensus 529 ~l~~~~~~V~~~G~Dv~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~~~~~p~Rv~------ds~IsE~~~vG~a~G 602 (868)
T 2yic_A 529 SLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVY------NSALSEFAAVGFEYG 602 (868)
T ss_dssp HHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEE------ECCSCSHHHHHHHHH
T ss_pred HHHhcCCCEEEEcCcCCccchhhcchhccccCCCceecchhhhcccccchhhcCCcEEE------ECCccHHHHHHHHHH
Confidence 44999999999 99 2 4 9999999999 8999999999 999999999999999
Q ss_pred c--cCCcccCCCCcccccccccccccceeeEeccCCchhh---hhHHHhhh-hccCCCCccceEEEccCCCcccc--ccc
Q psy8838 98 A--LGLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPP---LASTSTSV-VLDNPVFNKNVKIDIPLMPFYIE--KID 169 (319)
Q Consensus 98 a--~Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~a---ldqi~~~~-y~~~g~f~~PvvIr~P~GP~Iie--~p~ 169 (319)
+ .|.+ -.|| +|+||.||+..+ +||++++. +++++ ++|||+++|.|. .+. .|+
T Consensus 603 ~A~~G~~---~~~i--------------~eaqf~dF~~~AQ~~~DQ~i~~~~~k~~~--~~~vvi~~p~G~-~G~Gp~Hs 662 (868)
T 2yic_A 603 YSVGNPD---AMVL--------------WEAQFGDFVNGAQSIIDEFISSGEAKWGQ--LSDVVLLLPHGH-EGQGPDHT 662 (868)
T ss_dssp HHHHCTT---SEEE--------------EECSSGGGGGGGHHHHHHTTTTHHHHHCC--CCCCEEEEECCC-SSSCTTSS
T ss_pred HHccCCC---CceE--------------EEEehHHHHhhHHHHHHHHHHHHHHHhCC--CCCEEEEecCCC-CCCChhhc
Confidence 8 7844 0167 899999999999 99998865 45555 789999999875 332 255
Q ss_pred cc-cc-----cCCC---cccCCCC-CCCcchhhhhH------HHHHhhhhhhhhhhHH--Hh------hhhHHHHHHH--
Q psy8838 170 KL-NE-----RNNS---IIEDPVI-PSQAPEKHAIV------MIIRRRRKMKKHKLKK--LR------IRMKFEWAKI-- 223 (319)
Q Consensus 170 q~-~E-----~~lP---vv~pp~~-da~~~~~~a~~------Vl~IRRKKMkKHK~rK--lr------kR~kF~~aKV-- 223 (319)
+. .| ...| |+.|.++ +...++..|+. |+++.+|.|++|+... +. -+..++.+++
T Consensus 663 ~~~~E~~l~l~~~pnm~V~~Ps~p~~~~~lLr~a~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~~~f~~~ig~~~~~~ 742 (868)
T 2yic_A 663 SGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTD 742 (868)
T ss_dssp CCCHHHHHHHCCTTSCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTSCBCHHHHHSCCCCSEECCHHHHT
T ss_pred CCcHHHHHhcCCCCCCEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEechHHhCCCCCCCCccccCCCCceecCCcceeec
Confidence 53 55 5557 6777776 66666665433 7888999999998421 10 0113466666
Q ss_pred -HHhhhHH--HHHHHHHHHHHHHHhcc
Q psy8838 224 -RQRREMK--KEKAFQLEMSTKVKEGE 247 (319)
Q Consensus 224 -rr~R~~k--ke~~Fq~~L~~~lkeAe 247 (319)
.+++++. ....++.. ...|.+|+
T Consensus 743 ~l~~g~dv~r~Ii~~G~~-~~~l~aa~ 768 (868)
T 2yic_A 743 GEGDRNKVTRLLLTSGKI-YYELAARK 768 (868)
T ss_dssp SSCCGGGCCEEEEECSTH-HHHHHHHH
T ss_pred ccccCCceeEEEEEecHH-HHHHHHHH
Confidence 3556776 67778876 55555554
No 9
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=99.54 E-value=1.6e-16 Score=158.70 Aligned_cols=214 Identities=14% Similarity=0.020 Sum_probs=156.5
Q ss_pred cccHHHHHHHHHHHHHHhCCCeEE-eeecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cCCcccC
Q psy8838 29 QLTINFPLGSPVWALIADNDSTAI-EEHFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LGLTVLK 105 (319)
Q Consensus 29 ~lt~~~Ai~~al~~~m~~d~~v~i-GE~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~Glr~~~ 105 (319)
..++.+|++++|.++|++||++++ ++..++-++ +.+|.++| ++|++ |++|+|++++|++.|+ .|+|
T Consensus 321 ~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~-~~~f~~~~-~~r~~------~~gIaE~~~~~~a~G~A~~G~r--- 389 (629)
T 2o1x_A 321 AYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSG-LVEFSRVH-PHRYL------DVGIAEEVAVTTAAGMALQGMR--- 389 (629)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTT-CHHHHHHC-GGGEE------ECCSCHHHHHHHHHHHHHTTCE---
T ss_pred hHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcC-hHHHHHhc-CcceE------eccccHHHHHHHHHHHHHcCCE---
Confidence 678999999999999999999998 886555455 47899999 88999 9999999999999999 8999
Q ss_pred CCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEccCCCccccc---cccccc----cCCC-
Q psy8838 106 NNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPLMPFYIEK---IDKLNE----RNNS- 177 (319)
Q Consensus 106 ~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~P~GP~Iie~---p~q~~E----~~lP- 177 (319)
|+ |++ |.+|+..++||+.+..-. .+.|+|++.+.++...+. |+++.+ ..+|
T Consensus 390 --p~--------------~~~-~~~F~~~a~dqi~~~~a~----~~~pvv~~~~~~g~~g~dG~tH~~~~d~a~~r~iP~ 448 (629)
T 2o1x_A 390 --PV--------------VAI-YSTFLQRAYDQVLHDVAI----EHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPG 448 (629)
T ss_dssp --EE--------------EEE-EHHHHGGGHHHHHHTTTT----TTCCCEEEEESBBCCCTTCTTTCBCSHHHHTTTSTT
T ss_pred --EE--------------EEe-cHHHHHHHHHHHHHHHhh----cCCCEEEEEECCccCCCCCcccCccHHHHHHHccCC
Confidence 99 777 899999999999886533 368999999987765433 555422 4556
Q ss_pred --cccCCCC-CCCcchhhhhH----HHHHhhhhhhhhhhHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcccCC
Q psy8838 178 --IIEDPVI-PSQAPEKHAIV----MIIRRRRKMKKHKLKKLRIRMKFEWAKIRQRREMKKEKAFQLEMSTKVKEGERFS 250 (319)
Q Consensus 178 --vv~pp~~-da~~~~~~a~~----Vl~IRRKKMkKHK~rKlrkR~kF~~aKVrr~R~~kke~~Fq~~L~~~lkeAeaf~ 250 (319)
|+.|.+. +.+++...|++ |+.+..|.....-..+-...-+++.+.+.+++.+....+++.++..++++|+.+.
T Consensus 449 l~v~~P~d~~e~~~~~~~a~~~~~Pv~i~~~r~~~~~~~~~~~~~~~~G~~~~~~~g~dv~iva~G~~v~~a~~Aa~~L~ 528 (629)
T 2o1x_A 449 VRIGLPKDAAELRGMLKYAQTHDGPFAIRYPRGNTAQVPAGTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLP 528 (629)
T ss_dssp CEEECCSSHHHHHHHHHHHHHSSSCEEEECCSSBCCCCCTTCCCCCCTTCCEEEECCSSEEEEECHHHHHHHHHHHTTCT
T ss_pred cEEEecCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCCcccccccccCCceEEEeeCCCEEEEEecHHHHHHHHHHHHhc
Confidence 7888887 77777777776 3433444332210000001112344344456788889999999999999999885
Q ss_pred hhhHHHHHHHHhccccccccccCCcHHHHHHHHHH
Q psy8838 251 AEQYVENKLQLLHAEQLAESWKNVPESFIKEWTER 285 (319)
Q Consensus 251 ae~YV~~~l~~a~~~~~p~~w~~lp~~~ik~~~~~ 285 (319)
.+.--. +++|+-||++.|.+.+.+
T Consensus 529 ----------~~~Vi~-~~~~~Pld~~~i~~~~~~ 552 (629)
T 2o1x_A 529 ----------GVGVVN-ARFVKPLDEEMLREVGGR 552 (629)
T ss_dssp ----------TEEEEE-CCEEESCCHHHHHHHHHH
T ss_pred ----------CCEEEe-eCCCCCCcHHHHHHHHhh
Confidence 233333 445555888888777764
No 10
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=99.47 E-value=1.4e-14 Score=152.51 Aligned_cols=155 Identities=8% Similarity=-0.027 Sum_probs=120.6
Q ss_pred cccHHHHHHHHHHHHHHhCCCeEE-eee-----------------cCCccccccchhhhhCcCceeeecCCCCCCcchhH
Q psy8838 29 QLTINFPLGSPVWALIADNDSTAI-EEH-----------------FGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELV 90 (319)
Q Consensus 29 ~lt~~~Ai~~al~~~m~~d~~v~i-GE~-----------------~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ 90 (319)
.+++..+.+.||.++|++|++|++ ||. .||+|..+.+|.++||++||+ ||||||++
T Consensus 590 ~~dw~~~e~~al~~l~~~~~~V~~~g~Dv~~gTfs~rh~v~~d~~~g~~~~~l~~l~~~~gp~rv~------ds~IaE~~ 663 (933)
T 2jgd_A 590 LFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVW------DSVLSEEA 663 (933)
T ss_dssp CBCHHHHHHHHHHHHHTTTCCEEEEETTTTTCTTSCCCCSEECSSSSCEECGGGCSCTTCCCEEEE------CCCSCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEECCccCCcchhhhhhhcccccCCceeechHHHHHHcCCCeEE------ECCcCHHH
Confidence 478889999999999999999999 981 578999999999999999999 99999999
Q ss_pred HHHHhhcc--cCCcccCCCCcccccccccccccceeeEeccCCch---hhhhHHHhhh-hccCCCCccceEEEccCCCcc
Q psy8838 91 FLTISQSA--LGLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSL---PPLASTSTSV-VLDNPVFNKNVKIDIPLMPFY 164 (319)
Q Consensus 91 ivG~avGa--~Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~---~aldqi~~~~-y~~~g~f~~PvvIr~P~GP~I 164 (319)
++|++.|+ .|++ .+|| +|.||.||+. .++||++++. ...+ ...|+|+++|.|..-
T Consensus 664 ~vg~a~G~A~~G~~---~lpv--------------~e~qf~dF~~~AQra~DQii~~~~ak~~--~~~~vv~~l~~G~~g 724 (933)
T 2jgd_A 664 VLAFEYGYATAEPR---TLTI--------------WEAQFGDFANGAQVVIDQFISSGEQKWG--RMCGLVMLLPHGYEG 724 (933)
T ss_dssp HHHHHHHHHHHCTT---SEEE--------------EEC-CGGGGGGGHHHHHHTTTTHHHHHC--CCCCCEEEEECCCSS
T ss_pred HHHHHHHHHhcCCC---CCCE--------------EEEEEhhhhcccHHHHHHHHHHHHHHHc--cCCCEEEEEeCCCCC
Confidence 99999998 7876 3488 8999999998 6899998765 2221 257899999986321
Q ss_pred -cccccc-ccc--------cCCCcccCCCC-CCCcchhhhh-H-----HHHHhhhhhhhhh
Q psy8838 165 -IEKIDK-LNE--------RNNSIIEDPVI-PSQAPEKHAI-V-----MIIRRRRKMKKHK 208 (319)
Q Consensus 165 -ie~p~q-~~E--------~~lPvv~pp~~-da~~~~~~a~-~-----Vl~IRRKKMkKHK 208 (319)
++.|++ ..| ..+.|+.|.+. +...++..+. + |+++.+|.+++||
T Consensus 725 ~G~~Hss~~~E~~l~~~~~pnm~V~~Pst~~e~~~lLr~a~~~~~~~Pvii~~pk~l~r~~ 785 (933)
T 2jgd_A 725 QGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHP 785 (933)
T ss_dssp SCTTSSCCCHHHHHHTCCTTCCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCT
T ss_pred CCcccccchHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHhcCCCcEEEEecchhccCC
Confidence 222444 244 33447777776 6666666652 2 7778899999987
No 11
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=99.43 E-value=1.4e-13 Score=137.11 Aligned_cols=213 Identities=12% Similarity=0.017 Sum_probs=148.7
Q ss_pred ccccHHHHHHHHHHHHHHhCCCeEE-eeecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cCCccc
Q psy8838 28 EQLTINFPLGSPVWALIADNDSTAI-EEHFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LGLTVL 104 (319)
Q Consensus 28 ~~lt~~~Ai~~al~~~m~~d~~v~i-GE~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~Glr~~ 104 (319)
...++.+|++++|.++|++||++++ ++..++-++ +.+|.++| ++|++ |++|+|++++|++.|+ .|+|
T Consensus 317 ~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~-~~~~~~~~-~~r~~------~~gIaE~~~~~~a~G~A~~G~r-- 386 (621)
T 2o1s_A 317 GLPSYSKIFGDWLCETAAKDNKLMAITPAMREGSG-MVEFSRKF-PDRYF------DVAIAEQHAVTFAAGLAIGGYK-- 386 (621)
T ss_dssp -CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTT-CHHHHHHC-TTTEE------ECCSCHHHHHHHHHHHHHTTCE--
T ss_pred chHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcC-hHHHHHhC-CCceE------ecCcCHHHHHHHHHHHHHCCCE--
Confidence 4578999999999999999999998 886555455 47899999 88999 9999999999999999 8999
Q ss_pred CCCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEccCCCccccc---cccccc----cCCC
Q psy8838 105 KNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPLMPFYIEK---IDKLNE----RNNS 177 (319)
Q Consensus 105 ~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~P~GP~Iie~---p~q~~E----~~lP 177 (319)
|+ |++ |.+|+..++||+++..-. .+.|+|++.+.++...+. |++..+ ..+|
T Consensus 387 ---p~--------------~~~-~~~F~~~a~dqi~~~~a~----~~~pvv~~~~~~g~~g~~G~tH~~~~d~~~~~~iP 444 (621)
T 2o1s_A 387 ---PI--------------VAI-YSTFLQRAYDQVLHDVAI----QKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIP 444 (621)
T ss_dssp ---EE--------------EEE-ETTGGGGGHHHHHHTTTT----TTCCCEEEEESCBCCCTTCGGGCBCSHHHHTTTST
T ss_pred ---EE--------------EEe-hHhHHHHHHHHHHHHHHh----cCCCEEEEEECCccCCCCCCccCchHHHHHHhcCC
Confidence 99 887 999999999999886432 368999999987665433 555433 5566
Q ss_pred ---cccCCCC-CCCcchhhhhH-----HHHHhhhhhhhhhh-HHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Q psy8838 178 ---IIEDPVI-PSQAPEKHAIV-----MIIRRRRKMKKHKL-KKLRIRMKFEWAKIRQRREMKKEKAFQLEMSTKVKEGE 247 (319)
Q Consensus 178 ---vv~pp~~-da~~~~~~a~~-----Vl~IRRKKMkKHK~-rKlrkR~kF~~aKVrr~R~~kke~~Fq~~L~~~lkeAe 247 (319)
|+.|.+. +...+...|++ |+.+..|....+-. ..- ..-+++.+.+.+++.+.....++.++..++++
T Consensus 445 ~l~v~~P~d~~e~~~~l~~a~~~~~~Pv~i~~~r~~~~~~~~~~~-~~~~~G~~~~~~~g~dv~iva~G~~~~~a~~A-- 521 (621)
T 2o1s_A 445 EMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPL-EKLPIGKGIVKRRGEKLAILNFGTLMPEAAKV-- 521 (621)
T ss_dssp TCEEECCSSHHHHHHHHHHHHHCCSSCEEEECCSSBCCCCCCCCC-CCCCTTCCEEEECCSSEEEEEESTTHHHHHHH--
T ss_pred CCEEEecCCHHHHHHHHHHHHHcCCCCEEEEeCCCCCCCCCCCcc-ccccCCceEEeecCCCEEEEEecHHHHHHHHH--
Confidence 7888876 77677777765 23333333321110 000 01122332333456778888999999888877
Q ss_pred cCChhhHHHHHHHHhccccccccccCCcHHHHHHHHHH
Q psy8838 248 RFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTER 285 (319)
Q Consensus 248 af~ae~YV~~~l~~a~~~~~p~~w~~lp~~~ik~~~~~ 285 (319)
++-+ .+.--. +++|+-+|++.|.+.+.+
T Consensus 522 --------~~Gi-~v~Vi~-~~~~~P~d~~~i~~~~~~ 549 (621)
T 2o1s_A 522 --------AESL-NATLVD-MRFVKPLDEALILEMAAS 549 (621)
T ss_dssp --------HHHH-TCEEEE-CCEEESCCHHHHHHHHHH
T ss_pred --------cCCC-CEEEEe-cCccCCCCHHHHHHHHcc
Confidence 1111 122222 445555888888777654
No 12
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=99.26 E-value=1.5e-12 Score=133.00 Aligned_cols=189 Identities=12% Similarity=-0.041 Sum_probs=127.9
Q ss_pred ccccHHHHHHHHHHHHHHhCCCeEE-eee----cCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--c-
Q psy8838 28 EQLTINFPLGSPVWALIADNDSTAI-EEH----FGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--L- 99 (319)
Q Consensus 28 ~~lt~~~Ai~~al~~~m~~d~~v~i-GE~----~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~- 99 (319)
+.+++.+|.+++|.+++++||++++ |++ .|..|+.|+||.++|+++|++ |++|+|++++|+|.|+ .
T Consensus 377 ~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~R~~------d~GIaE~~mv~~A~GlA~~g 450 (690)
T 3m49_A 377 SKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYSGKNI------WYGVREFAMGAAMNGIALHG 450 (690)
T ss_dssp CEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTTBTTCCEE------ECCSCHHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhhcCCCceE------EcCchHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999 773 344468999999999999999 9999999999999999 6
Q ss_pred CCcccCCCCcccccccccccccceee--EeccCCchhhhhHHHhhhhccCCCCccceEEEccCCCc-cccc-ccc-ccc-
Q psy8838 100 GLTVLKNNPTTSAHHSMLLFSSMKCV--GMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPLMPF-YIEK-IDK-LNE- 173 (319)
Q Consensus 100 Glr~~~~~PV~~~~~~~~~f~~~~~e--i~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~P~GP~-Iie~-p~q-~~E- 173 (319)
|++ || |+ ++|.||..+++- ..+..+.||+++.+.++. ++|. |.+ +.|
T Consensus 451 G~~-----P~--------------~~tf~~Fs~f~~~air--------~~al~~lpVv~v~~~~gigvG~dG~THq~ied 503 (690)
T 3m49_A 451 GLK-----TY--------------GGTFFVFSDYLRPAIR--------LAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQ 503 (690)
T ss_dssp SCE-----EE--------------EEEEGGGGGGGHHHHH--------HHHHHTCCCEEEEECCSGGGCTTCGGGCCSSH
T ss_pred CCE-----EE--------------EEecHHHHHHHHHHHH--------HHHhcCCCcEEEEECCCcCCCCCCCccCCHHH
Confidence 899 99 76 567777766541 122346899999886544 5544 322 333
Q ss_pred ----cCCC---cccCCCC-CCCcchhhhhH-----HHHHhhhhhhhhhhHHH-hhhhHHHHH-HHHHhhh----HHHHHH
Q psy8838 174 ----RNNS---IIEDPVI-PSQAPEKHAIV-----MIIRRRRKMKKHKLKKL-RIRMKFEWA-KIRQRRE----MKKEKA 234 (319)
Q Consensus 174 ----~~lP---vv~pp~~-da~~~~~~a~~-----Vl~IRRKKMkKHK~rKl-rkR~kF~~a-KVrr~R~----~kke~~ 234 (319)
+.+| |+.|... +.......|++ ++.+..|.---.-...- .....+..- .|.++++ +.+..+
T Consensus 504 ~a~lr~iPnl~V~~Pad~~E~~~~l~~Ai~~~~~Pv~ir~~R~~~p~~~~~~~~~~~~~~~G~~vlr~g~~g~~dvtiia 583 (690)
T 3m49_A 504 LAALRAMPNVSVIRPADGNESVAAWRLALESTNKPTALVLTRQDLPTLEGAKDDTYEKVAKGAYVVSASKKETADVILLA 583 (690)
T ss_dssp HHHHHTSTTCEEECCSSHHHHHHHHHHHHHCSSSCEEEECCSSEEECCHHHHTTHHHHHHTSCEEEECCSSSSCSEEEEE
T ss_pred HHHHhcCCCCEEEeeCCHHHHHHHHHHHHHcCCCCEEEEeecccCCCCCccccccccccCCCeEEEEecCCCCCCEEEEE
Confidence 7888 5666665 65555666654 22222221111100000 001122211 2334443 788889
Q ss_pred HHHHHHHHHHhcccC
Q psy8838 235 FQLEMSTKVKEGERF 249 (319)
Q Consensus 235 Fq~~L~~~lkeAeaf 249 (319)
++.++..++++|+.+
T Consensus 584 ~G~~v~~Al~Aa~~L 598 (690)
T 3m49_A 584 TGSEVSLAVEAQKAL 598 (690)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred echHHHHHHHHHHHH
Confidence 999999999998865
No 13
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=99.22 E-value=5.8e-12 Score=127.93 Aligned_cols=188 Identities=11% Similarity=-0.033 Sum_probs=129.0
Q ss_pred cccccHHHHHHHHHHHHHHhCCCeEE-ee---ecCC-ccccccchh-hhhCcCceeeecCCCCCCcchhHHHHHhhcc--
Q psy8838 27 SEQLTINFPLGSPVWALIADNDSTAI-EE---HFGQ-KFNSQRGLM-DGFSQCQLMAVSLCGHSLIMELVFLTISQSA-- 98 (319)
Q Consensus 27 ~~~lt~~~Ai~~al~~~m~~d~~v~i-GE---~~Gg-vF~~t~GL~-~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa-- 98 (319)
.+.+++.+|++++|.++++.||++++ |+ ..|+ .|+.|+||. ++| ++|++ |+||+|++++|++.|+
T Consensus 352 ~~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~-p~R~~------d~GIaE~~~v~~a~GlA~ 424 (663)
T 3kom_A 352 PVKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQE-GANYL------SYGVREFGMAAIMNGLSL 424 (663)
T ss_dssp CCCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTCST-TCCEE------ECCSCHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCcccccccccccccC-CCCeE------ecCccHHHHHHHHHHHHH
Confidence 35688999999999999999999999 77 3343 488999996 999 68999 9999999999999999
Q ss_pred c-CCcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEc-cCCCccccc-cc-cccc-
Q psy8838 99 L-GLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDI-PLMPFYIEK-ID-KLNE- 173 (319)
Q Consensus 99 ~-Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~-P~GP~Iie~-p~-q~~E- 173 (319)
. |++ |+ |++ |..|+..+.+++-. .+..+.|++++. +.+-++.+. +. |+.|
T Consensus 425 ~gG~~-----P~--------------~~t-f~~F~~~~~~~ir~-----~a~~~lpvv~~~t~~g~g~G~dG~THq~~ed 479 (663)
T 3kom_A 425 YGGIK-----PY--------------GGT-FLVFSDYSRNAIRM-----SALMKQPVVHVMSHDSIGLGEDGPTHQPIEH 479 (663)
T ss_dssp HSSCE-----EE--------------EEE-EGGGHHHHHHHHHH-----HHHTTCCCEEEEECCSGGGCTTCTTTCCSSH
T ss_pred cCCCE-----EE--------------EEe-hHHHHHHHHHHHHH-----HHhcCCCEEEEEeCCccccCCCCCCcCCHHH
Confidence 6 999 99 786 88888777777633 234568999985 445445543 22 2333
Q ss_pred ----cCCC---cccCCCC-CCCcchhhhhH-----HHHHhhhhhhhhhhHHHh----hhhHHHH-HHHHHh--hhHHHHH
Q psy8838 174 ----RNNS---IIEDPVI-PSQAPEKHAIV-----MIIRRRRKMKKHKLKKLR----IRMKFEW-AKIRQR--REMKKEK 233 (319)
Q Consensus 174 ----~~lP---vv~pp~~-da~~~~~~a~~-----Vl~IRRKKMkKHK~rKlr----kR~kF~~-aKVrr~--R~~kke~ 233 (319)
+.+| |+.|... +.......|++ ++.+..| ...-.+. ....+.. +.+.++ +.+.+..
T Consensus 480 ~a~lr~iPnl~V~~Pad~~e~~~~l~~A~~~~~~Pv~ir~~r----~~~p~~~~~~~~~~~~~~G~~vl~~~~g~dvtii 555 (663)
T 3kom_A 480 VPSLRLIPNLSVWRPADTIETMIAWKEAVKSKDTPSVMVLTR----QNLMPVVQTQHQVANIARGGYLVKDNPDAKLTIV 555 (663)
T ss_dssp HHHHHTSTTCEEECCCSHHHHHHHHHHHHHCSSCCEEEECCS----SEECCCCCCHHHHHHHTTTCEEEECCTTCSCEEE
T ss_pred HHHHhcCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEccC----ccCCCcCccccchhcccCceEEEEecCCCCEEEE
Confidence 7788 6777665 55555556654 2211111 1100000 0011111 122233 6788899
Q ss_pred HHHHHHHHHHHhcccCC
Q psy8838 234 AFQLEMSTKVKEGERFS 250 (319)
Q Consensus 234 ~Fq~~L~~~lkeAeaf~ 250 (319)
.++.++..++++|+.+.
T Consensus 556 a~G~~v~~al~Aa~~L~ 572 (663)
T 3kom_A 556 ATGSEVELAVKVANEFE 572 (663)
T ss_dssp ECTTHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHH
Confidence 99999999999988654
No 14
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=99.17 E-value=1.7e-11 Score=123.06 Aligned_cols=219 Identities=10% Similarity=0.023 Sum_probs=138.6
Q ss_pred ccccHHHHHHHHHHHHHHhCCCeEE-eeec-CCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cCCcc
Q psy8838 28 EQLTINFPLGSPVWALIADNDSTAI-EEHF-GQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LGLTV 103 (319)
Q Consensus 28 ~~lt~~~Ai~~al~~~m~~d~~v~i-GE~~-GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~Glr~ 103 (319)
+.+++.+|++++|.++|++||++++ |+.. +|.| +.+|.++| ++|++ |+||+|++++|+++|+ .|++
T Consensus 311 ~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~~~--~~~~~~~~-p~R~~------d~gIaE~~~v~~a~G~A~~G~~- 380 (616)
T 3mos_A 311 DKIATRKAYGQALAKLGHASDRIIALDGDTKNSTF--SEIFKKEH-PDRFI------ECYIAEQNMVSIAVGCATRNRT- 380 (616)
T ss_dssp CBCCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHS--HHHHHHHC-GGGEE------ECCSCHHHHHHHHHHHHGGGCC-
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCcCCCcc--hhhHHHhC-CCCeE------EcCccHHHHHHHHHHHHHcCCC-
Confidence 4577889999999999999999999 8843 3444 68899999 67999 9999999999999999 8985
Q ss_pred cCCCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEccCCCccccc-ccc-ccc-----cCC
Q psy8838 104 LKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPLMPFYIEK-IDK-LNE-----RNN 176 (319)
Q Consensus 104 ~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~P~GP~Iie~-p~q-~~E-----~~l 176 (319)
++ ++.+|.+|+..++||+.+..++ + .++.++ .++.|..+++. |++ +.| ..+
T Consensus 381 ----~~--------------~~~~f~~Fl~~a~dqi~~~a~~-~--~~v~~v-~~~~g~~~G~dG~tH~~~ed~a~l~~i 438 (616)
T 3mos_A 381 ----VP--------------FCSTFAAFFTRAFDQIRMAAIS-E--SNINLC-GSHCGVSIGEDGPSQMALEDLAMFRSV 438 (616)
T ss_dssp ----EE--------------EEEEEGGGGGGGHHHHHHHHHT-T--CCEEEE-EESBSGGGCTTCGGGCBSSHHHHHHTS
T ss_pred ----CE--------------EEEehHHHHHHHHHHHHHHHHh-C--CCeEEE-EECCCccccCCCCcccCHHHHHHhcCC
Confidence 45 6999999999999999886543 2 223332 33434445543 333 333 566
Q ss_pred C---cccCCCC-CCCcchhhhhH---HHHHh-hhhhhhhhhHHHhhhhHHHHHHHHHhhhH--HHHHHHHHHHHHHHHhc
Q psy8838 177 S---IIEDPVI-PSQAPEKHAIV---MIIRR-RRKMKKHKLKKLRIRMKFEWAKIRQRREM--KKEKAFQLEMSTKVKEG 246 (319)
Q Consensus 177 P---vv~pp~~-da~~~~~~a~~---Vl~IR-RKKMkKHK~rKlrkR~kF~~aKVrr~R~~--kke~~Fq~~L~~~lkeA 246 (319)
| |+.|.+. +.......|.+ .+.|| .|.-...-+.. ...-+++.+.+.+++++ .....|+.++..++++|
T Consensus 439 P~l~V~~P~d~~e~~~~l~~a~~~~gp~~ir~~r~~~p~~~~~-~~~~~~Gka~vl~eg~d~dv~iva~G~~v~~al~Aa 517 (616)
T 3mos_A 439 PTSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAIIYNN-NEDFQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAA 517 (616)
T ss_dssp TTEEEECCCSHHHHHHHHHHHHTCCSEEEEECCSSCCBCCSCT-TCCCCTTCCEEEECCSSEEEEEECCTHHHHHHHHHH
T ss_pred CCCEEEecCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCccCCC-cccccCCeEEEEEeCCCCCEEEEEeCHHHHHHHHHH
Confidence 6 6666665 32222222221 00000 00000000000 01112444555566665 78889999999999998
Q ss_pred ccCChhhHHHHHHHHhccccccccccCCcHHHHHHHHHHH
Q psy8838 247 ERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTERK 286 (319)
Q Consensus 247 eaf~ae~YV~~~l~~a~~~~~p~~w~~lp~~~ik~~~~~~ 286 (319)
+.+..+-. --.-.=+++.+-||.+.|.+.+.+.
T Consensus 518 ~~L~~~Gi-------~v~Vidlr~l~PlD~e~i~~~~~~~ 550 (616)
T 3mos_A 518 ELLKKEKI-------NIRVLDPFTIKPLDRKLILDSARAT 550 (616)
T ss_dssp HHHHTTTC-------EEEEEECSEEESCCHHHHHHHHHHT
T ss_pred HHHHhcCC-------CEEEEEeCccCCCCHHHHHHHHHhc
Confidence 76533211 0011225666669999998877654
No 15
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=99.14 E-value=8.7e-12 Score=125.57 Aligned_cols=187 Identities=9% Similarity=-0.071 Sum_probs=126.9
Q ss_pred ccccHHHHHHHHHHHHHHhCCCeEE-eeecCCccc----cccchhh-hhCcCceeeecCCCCCCcchhHHHHHhhcc--c
Q psy8838 28 EQLTINFPLGSPVWALIADNDSTAI-EEHFGQKFN----SQRGLMD-GFSQCQLMAVSLCGHSLIMELVFLTISQSA--L 99 (319)
Q Consensus 28 ~~lt~~~Ai~~al~~~m~~d~~v~i-GE~~GgvF~----~t~GL~~-~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~ 99 (319)
+.+++.+|++++|.+++++||++++ ++..|+.++ .++++.+ +| ++|++ |++|+|++++|++.|+ .
T Consensus 347 ~~~~~r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~-p~R~i------~~gIaE~~~~~~a~GlA~~ 419 (651)
T 2e6k_A 347 KPIATRAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANP-LGRYL------HFGVREHAMGAILNGLNLH 419 (651)
T ss_dssp SCBCHHHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBT-TCCEE------ECCSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCC-CCceE------ecCcCHHHHHHHHHHHHHc
Confidence 3678999999999999999999998 775554444 5778997 99 89999 9999999999999999 7
Q ss_pred C-CcccCCCCcccccccccccccceee--EeccCCchhhhhHHHhhhhccCCCCccceEEE-ccCCCccccc---ccccc
Q psy8838 100 G-LTVLKNNPTTSAHHSMLLFSSMKCV--GMDKSYSLPPLASTSTSVVLDNPVFNKNVKID-IPLMPFYIEK---IDKLN 172 (319)
Q Consensus 100 G-lr~~~~~PV~~~~~~~~~f~~~~~e--i~~~df~~~aldqi~~~~y~~~g~f~~PvvIr-~P~GP~Iie~---p~q~~ 172 (319)
| ++ |+ ++ .+|.||++.++- ..+..+.|+|++ ++.+.++.+. | |..
T Consensus 420 Gg~~-----P~--------------~~t~~~F~~~~~~air--------~~a~~~lpvv~~~t~~g~g~G~dG~tH-q~~ 471 (651)
T 2e6k_A 420 GGYR-----AY--------------GGTFLVFSDYMRPAIR--------LAALMGVPTVFVFTHDSIALGEDGPTH-QPV 471 (651)
T ss_dssp SSCE-----EE--------------EEEEGGGGGGSHHHHH--------HHHHHTCCCEEEEECCSGGGCTTCTTT-CCS
T ss_pred CCCE-----EE--------------EEeHHHHHHHHHHHHH--------HHHhcCCCEEEEEECCccccCCCcCcc-ccH
Confidence 7 99 99 77 677887777631 123456889998 5777666544 5 343
Q ss_pred c-----cCCC---cccCCCC-CCCcchhhhhH-----HHHHhhhhhhhhhhHHHhhhhHHHHHHHHHhh--hHHHHHHHH
Q psy8838 173 E-----RNNS---IIEDPVI-PSQAPEKHAIV-----MIIRRRRKMKKHKLKKLRIRMKFEWAKIRQRR--EMKKEKAFQ 236 (319)
Q Consensus 173 E-----~~lP---vv~pp~~-da~~~~~~a~~-----Vl~IRRKKMkKHK~rKlrkR~kF~~aKVrr~R--~~kke~~Fq 236 (319)
| ..+| |+.|... +.......|++ ++.+..|.....-+..-...-.++ +.+.+++ .+.....++
T Consensus 472 edla~lr~iP~l~V~~Pad~~E~~~~l~~A~~~~~~Pv~i~~~r~~~~~~~~~~~~~~~~G-~~vl~~g~~~dv~iva~G 550 (651)
T 2e6k_A 472 EHLMSLRAMPNLFVIRPADAYETFYAWLVALRRKEGPTALVLTRQAVPLLSPEKARGLLRG-GYVLEDVEEPQGVLVATG 550 (651)
T ss_dssp SHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCCSSCEEEECCSSCBCCCCHHHHGGGGGS-SEEEECCSSCSEEEEECT
T ss_pred HHHHHhcCCCCcEEEecCCHHHHHHHHHHHHHcCCCCEEEEEeCCCCCCCCcchhhhhcCC-CEEEeeCCCCCEEEEEEC
Confidence 4 6677 6777776 66666666665 222223321111000000001112 2222334 677888999
Q ss_pred HHHHHHHHhcccCC
Q psy8838 237 LEMSTKVKEGERFS 250 (319)
Q Consensus 237 ~~L~~~lkeAeaf~ 250 (319)
.++..++++|+.+.
T Consensus 551 ~~v~~al~Aa~~L~ 564 (651)
T 2e6k_A 551 SEVHLALRAQALLR 564 (651)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
No 16
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=99.07 E-value=8.6e-11 Score=118.74 Aligned_cols=189 Identities=8% Similarity=-0.056 Sum_probs=130.3
Q ss_pred ccccHHHHHHHHHHHHHHhCCCeEE-ee---ecCCcc-ccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--c-
Q psy8838 28 EQLTINFPLGSPVWALIADNDSTAI-EE---HFGQKF-NSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--L- 99 (319)
Q Consensus 28 ~~lt~~~Ai~~al~~~m~~d~~v~i-GE---~~GgvF-~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~- 99 (319)
+.+++.+|++++|.++++.||++++ ++ ..++.| +.+.++.++| ++|++ |++|+|++++|++.|+ .
T Consensus 353 ~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~~~-p~R~i------d~GIaE~~~v~~a~GlA~~g 425 (669)
T 2r8o_A 353 AKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA-AGNYI------HYGVREFGMTAIANGISLHG 425 (669)
T ss_dssp CCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCT-TCSEE------ECCSCHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccccC-CCCee------ecchhHHHHHHHHHHHHHcC
Confidence 5688999999999999999999988 77 455555 6788999999 79999 9999999999999999 6
Q ss_pred CCcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEccC-CCccccc---cccccc--
Q psy8838 100 GLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPL-MPFYIEK---IDKLNE-- 173 (319)
Q Consensus 100 Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~P~-GP~Iie~---p~q~~E-- 173 (319)
|++ |+ | .+|..|+..+.+++-+..+ .+.|++++.+. +.++.+. |+ ..|
T Consensus 426 G~~-----P~--------------~-~tf~~F~~~~~~~ir~~a~-----~~lpvv~~~t~~g~~~G~dG~tHq-~~edl 479 (669)
T 2r8o_A 426 GFL-----PY--------------T-STFLMFVEYARNAVRMAAL-----MKQRQVMVYTHDSIGLGEDGPTHQ-PVEQV 479 (669)
T ss_dssp SCE-----EE--------------E-EEEGGGGGTTHHHHHHHHH-----TTCCCEEEEECCSGGGCTTCTTTC-CSSHH
T ss_pred CCe-----EE--------------E-eehHHHHHHHHHHHHHHHh-----cCCCEEEEEeCCCcCcCCCCCccC-CHHHH
Confidence 899 99 5 6788888778888755433 46899999874 4444433 53 333
Q ss_pred ---cCCC---cccCCCC-CCCcchhhhhH-----HHHHhhhhhhhhhhHHH--hhhhHHHHHHHHHh--h-hHHHHHHHH
Q psy8838 174 ---RNNS---IIEDPVI-PSQAPEKHAIV-----MIIRRRRKMKKHKLKKL--RIRMKFEWAKIRQR--R-EMKKEKAFQ 236 (319)
Q Consensus 174 ---~~lP---vv~pp~~-da~~~~~~a~~-----Vl~IRRKKMkKHK~rKl--rkR~kF~~aKVrr~--R-~~kke~~Fq 236 (319)
..+| |+.|... +.......|++ ++.+..|.....-...- ...-+++ +.+.++ + .+.....++
T Consensus 480 a~lr~iP~l~V~~Pad~~E~~~~l~~a~~~~~~Pv~i~~~r~~~~~~~~~~~~~~~~~~G-~~vl~~~~g~~dv~iva~G 558 (669)
T 2r8o_A 480 ASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARG-GYVLKDCAGQPELIFIATG 558 (669)
T ss_dssp HHHHTSTTCEEECCSSHHHHHHHHHHHHHCSSSCEEEECCSSEECCCCCCHHHHHHGGGS-CEEEECCSSSCSEEEEECG
T ss_pred HHhcCCCCCEEEecCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCCccchhhhccCC-CEEEeccCCCCCEEEEEEC
Confidence 5677 6777776 65566666665 12222222111000000 0001122 222233 4 788889999
Q ss_pred HHHHHHHHhcccCC
Q psy8838 237 LEMSTKVKEGERFS 250 (319)
Q Consensus 237 ~~L~~~lkeAeaf~ 250 (319)
.++..++++|+.+.
T Consensus 559 ~~v~~al~Aa~~L~ 572 (669)
T 2r8o_A 559 SEVELAVAAYEKLT 572 (669)
T ss_dssp GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998654
No 17
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.06 E-value=9.1e-11 Score=118.91 Aligned_cols=190 Identities=10% Similarity=-0.068 Sum_probs=126.6
Q ss_pred ccccHHHHHHHHHHHHHHhCCCeEE-eee---cCCccc---cccchhh-hhCcCceeeecCCCCCCcchhHHHHHhhcc-
Q psy8838 28 EQLTINFPLGSPVWALIADNDSTAI-EEH---FGQKFN---SQRGLMD-GFSQCQLMAVSLCGHSLIMELVFLTISQSA- 98 (319)
Q Consensus 28 ~~lt~~~Ai~~al~~~m~~d~~v~i-GE~---~GgvF~---~t~GL~~-~FG~~RV~~~~~~~dTPIsE~~ivG~avGa- 98 (319)
+.+++.+|++++|.++|++||++++ |+. .+|.+. .+.++.+ +| ++|++ |++|+|++++|++.|+
T Consensus 350 ~~~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~~-~~R~i------d~GIaE~~~~~~a~GlA 422 (673)
T 1r9j_A 350 SAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSK-EGRYI------RFGVREHAMCAILNGLD 422 (673)
T ss_dssp SCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBT-TCCEE------ECCSCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccCC-CCCeE------ecCccHHHHHHHHHHHH
Confidence 4678999999999999999999998 884 344442 0455887 99 89999 9999999999999999
Q ss_pred -c-CCcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEc-cCCCccccc---ccccc
Q psy8838 99 -L-GLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDI-PLMPFYIEK---IDKLN 172 (319)
Q Consensus 99 -~-Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~-P~GP~Iie~---p~q~~ 172 (319)
. |++ |+ |++ |..|+..+.+|+-+..+ .+.|++++. +.|.++++. | |..
T Consensus 423 ~~GG~~-----P~--------------~~~-~~~F~~~~~~~ir~~a~-----~~~pvv~~~t~~g~g~G~dG~tH-q~~ 476 (673)
T 1r9j_A 423 AHDGII-----PF--------------GGT-FLNFIGYALGAVRLAAI-----SHHRVIYVATHDSIGVGEDGPTH-QPV 476 (673)
T ss_dssp HHSSCE-----EE--------------EEE-EGGGGGGGHHHHHHHHH-----HTCCCEEEEECCSGGGCTTCTTT-CCS
T ss_pred hcCCCE-----EE--------------EEe-hHHHHHHHHHHHHHHHh-----cCCCEEEEEECCccCcCCCCccc-CCH
Confidence 6 699 99 775 66677677777655333 357888886 445556544 5 333
Q ss_pred c-----cCCC---cccCCCC-CCCcchhhhhH-----HHHHhhhhhhhhhhHHHhhhhHHHHHHHHHhh--hHHHHHHHH
Q psy8838 173 E-----RNNS---IIEDPVI-PSQAPEKHAIV-----MIIRRRRKMKKHKLKKLRIRMKFEWAKIRQRR--EMKKEKAFQ 236 (319)
Q Consensus 173 E-----~~lP---vv~pp~~-da~~~~~~a~~-----Vl~IRRKKMkKHK~rKlrkR~kF~~aKVrr~R--~~kke~~Fq 236 (319)
| ..+| |+.|+.. +.......|++ ++.+..|.-.-.-...-...-+++ +.|.+++ .+.+...++
T Consensus 477 edla~lr~iP~l~V~~Pad~~e~~~~l~~a~~~~~~Pv~i~~~r~~~~~~~~~~~~~~~~G-a~vl~~g~~~dv~lia~G 555 (673)
T 1r9j_A 477 ELVAALRAMPNLQVIRPSDQTETSGAWAVALSSIHTPTVLCLSRQNTEPQSGSSIEGVRHG-AYSVVDVPDLQLVIVASG 555 (673)
T ss_dssp SHHHHHHHSTTCEEECCSSHHHHHHHHHHHHHCTTCCEEEECCSSEECCCTTCCHHHHHTS-CEEEECCTTCSEEEEECG
T ss_pred HHHHHHcCCCCCEEEeCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCcccccccCC-CEEEeeCCCCCEEEEEec
Confidence 3 5667 6777776 65566666655 122222211100000000001122 2233344 678888999
Q ss_pred HHHHHHHHhcccCCh
Q psy8838 237 LEMSTKVKEGERFSA 251 (319)
Q Consensus 237 ~~L~~~lkeAeaf~a 251 (319)
.++..++++|+.+..
T Consensus 556 ~~v~~al~Aa~~L~~ 570 (673)
T 1r9j_A 556 SEVSLAVDAAKALSG 570 (673)
T ss_dssp GGHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHh
Confidence 999999999987654
No 18
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.02 E-value=2.2e-10 Score=116.06 Aligned_cols=189 Identities=10% Similarity=-0.087 Sum_probs=125.5
Q ss_pred ccccHHHHHHHHHHHHHHhCCCeEE-eeecCCccccc-cc---hhh-hhCcCceeeecCCCCCCcchhHHHHHhhcc--c
Q psy8838 28 EQLTINFPLGSPVWALIADNDSTAI-EEHFGQKFNSQ-RG---LMD-GFSQCQLMAVSLCGHSLIMELVFLTISQSA--L 99 (319)
Q Consensus 28 ~~lt~~~Ai~~al~~~m~~d~~v~i-GE~~GgvF~~t-~G---L~~-~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~ 99 (319)
+.+++.+|++++|.+++++||++++ ++..++..++. +| +.+ +| ++|++ |++|+|++++|++.|+ .
T Consensus 364 ~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~-~~R~i------d~gIaE~~~v~~a~GlA~~ 436 (675)
T 1itz_A 364 PGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTA-EERNV------RFGVREHGMGAICNGIALH 436 (675)
T ss_dssp CCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCT-TCCBC------CCCSCHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccccccccccccCC-CCCeE------eecccHHHHHHHHHHHHhc
Confidence 5688999999999999999999998 77544444332 24 776 89 79999 9999999999999999 7
Q ss_pred C--CcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEc-cCCCccccc---cccccc
Q psy8838 100 G--LTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDI-PLMPFYIEK---IDKLNE 173 (319)
Q Consensus 100 G--lr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~-P~GP~Iie~---p~q~~E 173 (319)
| ++ |+ |++ |..|+..+.+++-+.. ..+.|++++. +.+.++.+. | |..|
T Consensus 437 G~~~~-----P~--------------~~t-~~~F~~~~~~~ir~~a-----~~~lpvv~~~t~~g~g~G~dG~tH-q~~e 490 (675)
T 1itz_A 437 SPGFV-----PY--------------CAT-FFVFTDYMRGAMRISA-----LSEAGVIYVMTHDSIGLGEDGPTH-QPIE 490 (675)
T ss_dssp CTTCE-----EE--------------EEE-EGGGHHHHHHHHHHHH-----HHTCCCEEEEECCSGGGCTTCTTT-CCSS
T ss_pred CCCCE-----EE--------------EEE-HHHHHHHHHHHHHHHH-----hcCCCEEEEEECCccccCCCCCCc-CcHH
Confidence 8 99 99 776 7777777777764433 3468898887 345555433 5 3333
Q ss_pred -----cCCC---cccCCCC-CCCcchhhhhH-----HHHHhhhhhhhhhhHHHhhhhHHHHHHHHHh---h--hHHHHHH
Q psy8838 174 -----RNNS---IIEDPVI-PSQAPEKHAIV-----MIIRRRRKMKKHKLKKLRIRMKFEWAKIRQR---R--EMKKEKA 234 (319)
Q Consensus 174 -----~~lP---vv~pp~~-da~~~~~~a~~-----Vl~IRRKKMkKHK~rKlrkR~kF~~aKVrr~---R--~~kke~~ 234 (319)
..+| |+.|+.. +.......|++ ++.+..|.-.-.-...-...-+++ +.+.++ + .+.....
T Consensus 491 dla~lr~iP~l~V~~Pad~~e~~~~l~~a~~~~~~Pv~i~~~r~~~p~~~~~~~~~~~~G-a~vl~~~~~G~~~dv~iva 569 (675)
T 1itz_A 491 HLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRPSILALSRQKLPHLPGTSIEGVEKG-GYTISDNSTGNKPDLIVMG 569 (675)
T ss_dssp HHHHHHSSSSCEEECCCSHHHHHHHHHHHHHCTTSCEEEEECSSCBCCCTTCCHHHHTTS-SEEEEECCSTTCCSEEEEE
T ss_pred HHHHhccCCCeEEEECCCHHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCCccccccccC-CEEEecccCCCCCCEEEEE
Confidence 6778 6777766 55555556655 122222211000000000011223 233333 4 7888889
Q ss_pred HHHHHHHHHHhcccCC
Q psy8838 235 FQLEMSTKVKEGERFS 250 (319)
Q Consensus 235 Fq~~L~~~lkeAeaf~ 250 (319)
++.++..++++|+.+.
T Consensus 570 ~G~~v~~al~Aa~~L~ 585 (675)
T 1itz_A 570 TGSELEIAAKAADELR 585 (675)
T ss_dssp CGGGHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHH
Confidence 9999999999988654
No 19
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=98.98 E-value=7.6e-11 Score=119.49 Aligned_cols=191 Identities=11% Similarity=-0.058 Sum_probs=125.7
Q ss_pred cccccHHHHHHHHHHHHHHhCCCeEE-eee---cCC-------ccccccchhhhhCcCceeeecCCCCCCcchhHHHHHh
Q psy8838 27 SEQLTINFPLGSPVWALIADNDSTAI-EEH---FGQ-------KFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTIS 95 (319)
Q Consensus 27 ~~~lt~~~Ai~~al~~~m~~d~~v~i-GE~---~Gg-------vF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~a 95 (319)
.+.+++.+|++++|.+++++||++++ |++ .++ .|..+.|+.++| ++|++ |+||+|++++|++
T Consensus 353 ~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~~~~-p~R~~------d~gIaE~~~vg~a 425 (680)
T 1gpu_A 353 DSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNY-SGRYI------RYGIREHAMGAIM 425 (680)
T ss_dssp SCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEET-TCCEE------ECCSCHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhCCCEEEEecccccccccccccccccccccccccCC-CCcee------cCCccHHHHHHHH
Confidence 35688999999999999999999998 773 333 344444444589 79999 9999999999999
Q ss_pred hcc--cC-CcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEcc-CCCccccc---c
Q psy8838 96 QSA--LG-LTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIP-LMPFYIEK---I 168 (319)
Q Consensus 96 vGa--~G-lr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~P-~GP~Iie~---p 168 (319)
.|+ .| ++ +|| | .+|..|+..+.+++-. .+..+.|++++.+ .|.++++. |
T Consensus 426 ~GlA~~Gg~~----~P~--------------~-~~f~~F~~~~~~air~-----~a~~~lpvv~v~t~~g~g~G~dG~tH 481 (680)
T 1gpu_A 426 NGISAFGANY----KPY--------------G-GTFLNFVSYAAGAVRL-----SALSGHPVIWVATHDSIGVGEDGPTH 481 (680)
T ss_dssp HHHHHHCTTC----EEE--------------E-EEEHHHHGGGHHHHHH-----HHHHTCCCEEEEECCSGGGCTTCTTT
T ss_pred HHHHhcCCCc----eEE--------------E-eehHHHHHHHHHHHHH-----HHhcCCCEEEEEeCCccccCCCCCcc
Confidence 999 67 65 388 5 5677776667777532 2345689999874 45555534 5
Q ss_pred ccccc-----cCCC---cccCCCC-CCCcchhhhhH-----HHHHhhhhhhhhhhHHHhhhhHHHHHHHHHhh--hHHHH
Q psy8838 169 DKLNE-----RNNS---IIEDPVI-PSQAPEKHAIV-----MIIRRRRKMKKHKLKKLRIRMKFEWAKIRQRR--EMKKE 232 (319)
Q Consensus 169 ~q~~E-----~~lP---vv~pp~~-da~~~~~~a~~-----Vl~IRRKKMkKHK~rKlrkR~kF~~aKVrr~R--~~kke 232 (319)
|+.| ..+| |+.|... +.......|++ ++.+..|.-...-...-...-+++ +.+.+++ .+.+.
T Consensus 482 -q~~edla~lr~iP~l~V~~Pad~~e~~~~l~~A~~~~~~Pv~i~~~r~~~~~~~~~~~~~~~~G-~~vl~~g~~~dvti 559 (680)
T 1gpu_A 482 -QPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESASKG-GYVLQDVANPDIIL 559 (680)
T ss_dssp -CCSSHHHHHHTSSSCEEECCCSHHHHHHHHHHHHHCSSCCEEEECCSSCBCCCTTCCHHHHTTS-CEEEECCSSCSEEE
T ss_pred -CCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCCcchhhccCC-CEEEecCCCCCEEE
Confidence 3444 6777 6777776 66666666665 222222221111000000001112 2233344 78889
Q ss_pred HHHHHHHHHHHHhcccCC
Q psy8838 233 KAFQLEMSTKVKEGERFS 250 (319)
Q Consensus 233 ~~Fq~~L~~~lkeAeaf~ 250 (319)
.+++.++..++++|+.+.
T Consensus 560 va~G~~v~~al~Aa~~L~ 577 (680)
T 1gpu_A 560 VATGSEVSLSVEAAKTLA 577 (680)
T ss_dssp EECTHHHHHHHHHHHHHH
T ss_pred EEEcHHHHHHHHHHHHHH
Confidence 999999999999998653
No 20
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=98.97 E-value=1.6e-10 Score=116.97 Aligned_cols=189 Identities=11% Similarity=-0.042 Sum_probs=129.9
Q ss_pred ccccHHHHHHHHHHHHHHhCCCeEE-eeecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--c-CCcc
Q psy8838 28 EQLTINFPLGSPVWALIADNDSTAI-EEHFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--L-GLTV 103 (319)
Q Consensus 28 ~~lt~~~Ai~~al~~~m~~d~~v~i-GE~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~-Glr~ 103 (319)
..+...+|.+++|.++++.+|++++ +++.++.-++.-...++||++|++ |++|+|++++|+|.|+ . |++
T Consensus 336 ~~~a~r~a~~~~l~~l~~~~p~~v~~~aDl~~s~~~~~~~~~~f~p~R~~------d~GIaE~~~v~~a~GlA~~gG~~- 408 (632)
T 3l84_A 336 KDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNI------HFGIREHAMAAINNAFARYGIFL- 408 (632)
T ss_dssp CCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBTTTSSEE------ECCSCHHHHHHHHHHHHHHSSCE-
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEecccCCccCcchhcccccCCCCeE------EeCccHHHHHHHHHHHHHcCCCE-
Confidence 4577889999999999999999999 665544433333345789999999 9999999999999998 6 899
Q ss_pred cCCCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEc-cCCCccccc-ccc-ccc-----cC
Q psy8838 104 LKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDI-PLMPFYIEK-IDK-LNE-----RN 175 (319)
Q Consensus 104 ~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~-P~GP~Iie~-p~q-~~E-----~~ 175 (319)
|| |++ |..|+..+++|+-.. +..+.|++++. +.+-++++. +.+ +.| +.
T Consensus 409 ----P~--------------~~~-f~~F~~~~~~~ir~~-----a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr~ 464 (632)
T 3l84_A 409 ----PF--------------SAT-FFIFSEYLKPAARIA-----ALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRA 464 (632)
T ss_dssp ----EE--------------EEE-EGGGHHHHHHHHHHH-----HHHTCCCEEEEECCSGGGCTTCGGGSCSSHHHHHHH
T ss_pred ----EE--------------EEe-cHHHHHHHHHHHHHH-----hccCCCEEEEEECCCcCCCCCCCCCCCHhHHHHHhc
Confidence 99 886 888888888887332 23468998885 444445543 222 333 77
Q ss_pred CC---cccCCCC-CCCcchhhhhH----HHHHh-hhhhhhhhhHHHhhhhHHHHH-HHHHh--hhHHHHHHHHHHHHHHH
Q psy8838 176 NS---IIEDPVI-PSQAPEKHAIV----MIIRR-RRKMKKHKLKKLRIRMKFEWA-KIRQR--REMKKEKAFQLEMSTKV 243 (319)
Q Consensus 176 lP---vv~pp~~-da~~~~~~a~~----Vl~IR-RKKMkKHK~rKlrkR~kF~~a-KVrr~--R~~kke~~Fq~~L~~~l 243 (319)
+| |+.|... +.......|++ ++.+. |.+. -.. .-....+++.. .+.++ +.+.+..+++.++..++
T Consensus 465 iP~l~V~~P~d~~e~~~~l~~A~~~~~Pv~ir~~r~~~-~~~--~~~~~~~~~~g~~vl~~~~g~dvtiia~G~~v~~al 541 (632)
T 3l84_A 465 MPNFLTFRPADGVENVKAWQIALNADIPSAFVLSRQKL-KAL--NEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCL 541 (632)
T ss_dssp SSSCEEECCSSHHHHHHHHHHHHHCSSCEEEECCSSCB-CCC--CCCSBCCGGGSSEEEECCTTCSEEEEECGGGHHHHH
T ss_pred CCCCEEEecCCHHHHHHHHHHHHhCCCCEEEEEcCCCC-CCC--ccccccccccccEEEEecCCCCEEEEEechHHHHHH
Confidence 77 6666665 66666667765 22222 2222 000 00011234443 34444 78899999999999999
Q ss_pred HhcccCC
Q psy8838 244 KEGERFS 250 (319)
Q Consensus 244 keAeaf~ 250 (319)
++|+.+.
T Consensus 542 ~Aa~~L~ 548 (632)
T 3l84_A 542 ESANELE 548 (632)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998654
No 21
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=98.96 E-value=3.8e-10 Score=115.83 Aligned_cols=192 Identities=9% Similarity=-0.078 Sum_probs=128.8
Q ss_pred ccccHHHHHHHHHHHHHHhCCCeEE-eee---cCCc-cccccchhhh---hC--cCceeeecCCCCCCcchhHHHHHhhc
Q psy8838 28 EQLTINFPLGSPVWALIADNDSTAI-EEH---FGQK-FNSQRGLMDG---FS--QCQLMAVSLCGHSLIMELVFLTISQS 97 (319)
Q Consensus 28 ~~lt~~~Ai~~al~~~m~~d~~v~i-GE~---~Ggv-F~~t~GL~~~---FG--~~RV~~~~~~~dTPIsE~~ivG~avG 97 (319)
+.++..+|++++|.+++++||++++ +++ .++. +..+.++.++ |+ .+|++ |++|+|++++|+|.|
T Consensus 393 ~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~p~~~~R~~------d~GIaE~~mv~~AaG 466 (711)
T 3uk1_A 393 ETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGPGVQWGNHI------NYGVREFGMSAAING 466 (711)
T ss_dssp CCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCEECSSSSSEECCSEE------ECCSCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhhhhhccCCCCCCcEE------EeCccHHHHHHHHHH
Confidence 5578899999999999999999999 773 3333 3567899999 96 48999 999999999999999
Q ss_pred c--c-CCcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEccC-CCccccc-cc-cc
Q psy8838 98 A--L-GLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPL-MPFYIEK-ID-KL 171 (319)
Q Consensus 98 a--~-Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~P~-GP~Iie~-p~-q~ 171 (319)
+ . |++ || |++ |.+|+..+.+++-... ..+.|++++... +-++.|. +. |+
T Consensus 467 lA~~~G~~-----Pv--------------~~~-f~~F~~~~~~~ir~~a-----~~~lpv~~v~thdg~gvG~dG~THq~ 521 (711)
T 3uk1_A 467 LVLHGGYK-----PF--------------GGT-FLTFSDYSRNALRVAA-----LMKVPSIFVFTHDSIGLGEDGPTHQS 521 (711)
T ss_dssp HHHHSSCE-----EE--------------EEE-EGGGHHHHHHHHHHHH-----HHTCCCEEEEECCSGGGCTTCTTTCC
T ss_pred HHHcCCCE-----EE--------------EEE-hHHHHHHHHHHHHHhh-----hcCCCEEEEEECCCcCcCCCCCccCC
Confidence 9 4 999 99 774 8889888888764322 346888888753 3335543 22 23
Q ss_pred cc-----cCCC---cccCCCC-CCCcchhhhhH----HHHHhhhhhhhhhhHHHhhhhHH--HHHHHHH-hh----hHHH
Q psy8838 172 NE-----RNNS---IIEDPVI-PSQAPEKHAIV----MIIRRRRKMKKHKLKKLRIRMKF--EWAKIRQ-RR----EMKK 231 (319)
Q Consensus 172 ~E-----~~lP---vv~pp~~-da~~~~~~a~~----Vl~IRRKKMkKHK~rKlrkR~kF--~~aKVrr-~R----~~kk 231 (319)
.| ..+| |+.|... +.......|++ ++.+..|.-.-+-...-.....+ +...+++ ++ .+.+
T Consensus 522 ~ed~a~lr~iPnl~V~~Pad~~E~~~~l~~Ai~~~~Pv~ir~~r~~~p~~~~~~~~~~~i~~G~~vl~~~~G~~~~~dvt 601 (711)
T 3uk1_A 522 VEHVASLRLIPNLDVWRPADTVETAVAWTYAVAHQHPSCLIFSRQNLAFNARTDAQLANVEKGGYVLRDWDEEIVARKII 601 (711)
T ss_dssp SSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHSSSCEEEECCSSEECCCCCCHHHHHHGGGSSEEEECCCSSCCSEEEE
T ss_pred hhHHHHHhcCCCCEEEecCCHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCccccccccCCCeEEEEecCCCCCCCCEE
Confidence 33 7788 6777666 66666666665 22222221111100000000111 2122333 24 7889
Q ss_pred HHHHHHHHHHHHHhcccCC
Q psy8838 232 EKAFQLEMSTKVKEGERFS 250 (319)
Q Consensus 232 e~~Fq~~L~~~lkeAeaf~ 250 (319)
...++.++..++++|+.+.
T Consensus 602 iia~G~~v~~al~Aa~~L~ 620 (711)
T 3uk1_A 602 LIATGSEVELAMKAVEPLA 620 (711)
T ss_dssp EEECTTHHHHHHHHHHHHH
T ss_pred EEEecHHHHHHHHHHHHHH
Confidence 9999999999999988653
No 22
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=98.91 E-value=6.5e-10 Score=114.02 Aligned_cols=187 Identities=8% Similarity=-0.110 Sum_probs=120.3
Q ss_pred ccccHHHHHHHHHHHHHHhCCCeEE-eee---cCCc-cccccchhhhh------Cc---CceeeecCCCCCCcchhHHHH
Q psy8838 28 EQLTINFPLGSPVWALIADNDSTAI-EEH---FGQK-FNSQRGLMDGF------SQ---CQLMAVSLCGHSLIMELVFLT 93 (319)
Q Consensus 28 ~~lt~~~Ai~~al~~~m~~d~~v~i-GE~---~Ggv-F~~t~GL~~~F------G~---~RV~~~~~~~dTPIsE~~ivG 93 (319)
+.+++.+|++++|.+++++||++++ ++. .+|. ++.+.++.++| +. +|++ |++|+|++++|
T Consensus 373 ~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~i------d~GIaE~~mv~ 446 (700)
T 3rim_A 373 KALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTL------HFGVREHAMGA 446 (700)
T ss_dssp SCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEE------ECCSCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCcee------ecCccHHHHHH
Confidence 5678999999999999999999999 773 3343 46689999999 44 6999 99999999999
Q ss_pred Hhhcc--c-CCcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEccC-CCccccc-c
Q psy8838 94 ISQSA--L-GLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPL-MPFYIEK-I 168 (319)
Q Consensus 94 ~avGa--~-Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~P~-GP~Iie~-p 168 (319)
++.|+ . |++ || |+ +|..|+-...+++-. .+..+.|+++..+. +-++++. |
T Consensus 447 ~A~GlA~~gG~~-----Pv--------------~~-tF~~F~d~~~~~ir~-----~al~~lpvv~v~thdg~gvG~dG~ 501 (700)
T 3rim_A 447 ILSGIVLHGPTR-----AY--------------GG-TFLQFSDYMRPAVRL-----AALMDIDTIYVWTHDSIGLGEDGP 501 (700)
T ss_dssp HHHHHHHHSSCE-----EE--------------EE-EEGGGGGGGHHHHHH-----HHHHTCCCEEEEECCSGGGCTTCT
T ss_pred HHHHHHHcCCCE-----EE--------------EE-ecHHHHHHHHHHHHH-----hcCCCCCEEEEEeCCCcccCCCCC
Confidence 99998 6 999 99 66 444444323333211 22346888888753 3335544 3
Q ss_pred c-cccc-----cCCC---cccCCCC-CCCcchhhhhHH------HHHhhhhhhhhhhHHH----hhhhHHHHHHHHHhhh
Q psy8838 169 D-KLNE-----RNNS---IIEDPVI-PSQAPEKHAIVM------IIRRRRKMKKHKLKKL----RIRMKFEWAKIRQRRE 228 (319)
Q Consensus 169 ~-q~~E-----~~lP---vv~pp~~-da~~~~~~a~~V------l~IRRKKMkKHK~rKl----rkR~kF~~aKVrr~R~ 228 (319)
. |+.| +.+| |+.|... +.......|++- ..|| +-|...-.+ ...-+++. .|.++++
T Consensus 502 THq~ied~a~lr~iPnl~V~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir---~~r~~~~~~~~~~~~~~~~G~-~vlr~g~ 577 (700)
T 3rim_A 502 THQPIEHLSALRAIPRLSVVRPADANETAYAWRTILARRNGSGPVGLI---LTRQGVPVLDGTDAEGVARGG-YVLSDAG 577 (700)
T ss_dssp TTSCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHTTTTCSSCEEEE---CCSSEECCCTTCCHHHHHHSC-EEEECCS
T ss_pred ccCChhHHHHHhcCCCCEEEeCCCHHHHHHHHHHHHHccCCCCCEEEE---eccccCCCcCcccccccCCCc-EEEecCC
Confidence 3 3444 7788 5666665 555455544421 1111 111111001 01112222 2444454
Q ss_pred --------HHHHHHHHHHHHHHHHhcccC
Q psy8838 229 --------MKKEKAFQLEMSTKVKEGERF 249 (319)
Q Consensus 229 --------~kke~~Fq~~L~~~lkeAeaf 249 (319)
+.+...++.++..++++|+.+
T Consensus 578 ~~~~~~~~dvtiia~G~~v~~al~Aa~~L 606 (700)
T 3rim_A 578 GLQPGEEPDVILIATGSEVQLAVAAQTLL 606 (700)
T ss_dssp CCCTTCCCSEEEEECGGGHHHHHHHHHHH
T ss_pred ccccCCCCCEEEEEechHHHHHHHHHHHH
Confidence 788899999999999998864
No 23
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=97.65 E-value=3.3e-05 Score=81.46 Aligned_cols=192 Identities=6% Similarity=-0.046 Sum_probs=111.9
Q ss_pred ccccHHHHHHHHHHHHHHhC---CCeEE--ee---ecCC---------------ccc-cccchh---hhhCcCceeeecC
Q psy8838 28 EQLTINFPLGSPVWALIADN---DSTAI--EE---HFGQ---------------KFN-SQRGLM---DGFSQCQLMAVSL 80 (319)
Q Consensus 28 ~~lt~~~Ai~~al~~~m~~d---~~v~i--GE---~~Gg---------------vF~-~t~GL~---~~FG~~RV~~~~~ 80 (319)
+.+++..|..++|.+++++| ++++. .+ -+|+ .|. ...|++ .+.-++|++
T Consensus 490 ~~~atr~afg~~L~~l~~~~~~~~~iV~i~pd~~~~~G~~dl~~S~~i~~~~~~~f~~~d~~~~~~~~e~~~~R~~---- 565 (886)
T 2qtc_A 490 KEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQIL---- 565 (886)
T ss_dssp SCBCHHHHHHHHHHHHTTCTTTTTTEEEEESSCSGGGTCHHHHHHHCBBCC-----------------CBTTCCBE----
T ss_pred CcchHHHHHHHHHHHHHhhcccCCcEEEEcCccccccCcccccccccccccCCcccccccchhhhhhhhcCCCcee----
Confidence 45778999999999999988 88885 33 2332 221 112221 133378999
Q ss_pred CCCCCcchhH-HH---HHhhcc--cC--CcccCCCCcccccccccccccceeeEeccCCc-hhhhhHHHhhh-hccCCCC
Q psy8838 81 CGHSLIMELV-FL---TISQSA--LG--LTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYS-LPPLASTSTSV-VLDNPVF 150 (319)
Q Consensus 81 ~~dTPIsE~~-iv---G~avGa--~G--lr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~-~~aldqi~~~~-y~~~g~f 150 (319)
|++|+|++ ++ |++.|+ .| ++ || .+.|..|. .-++||+.+.. |+..
T Consensus 566 --d~GIaE~~a~~~~~g~a~GlA~~G~~~~-----P~---------------~~~ys~F~~qRa~Dqi~~~~d~~~~--- 620 (886)
T 2qtc_A 566 --QEGINELGAGCSWLAAATSYSTNNLPMI-----PF---------------YIYYSMFGFQRIGDLCWAAGDQQAR--- 620 (886)
T ss_dssp --ECCSCHHHHHHHHHHHHTHHHHTSCCCE-----EE---------------EEEEGGGSHHHHHHHHHHHHHTTCC---
T ss_pred --eeccCchhhhhHHHHHHHHHHhcCCCce-----EE---------------EEEehHHHHHHHHHHHHHHHHHhcC---
Confidence 99999999 67 899998 78 89 98 45566674 47889998864 5543
Q ss_pred ccceEE-EccCCCcccc---ccccc-cc---cCCC---cccCCCC-CCCcchhhhhHH--------HHHhhhhhhhhhh-
Q psy8838 151 NKNVKI-DIPLMPFYIE---KIDKL-NE---RNNS---IIEDPVI-PSQAPEKHAIVM--------IIRRRRKMKKHKL- 209 (319)
Q Consensus 151 ~~PvvI-r~P~GP~Iie---~p~q~-~E---~~lP---vv~pp~~-da~~~~~~a~~V--------l~IRRKKMkKHK~- 209 (319)
++.+ -+..++.+.+ .|++. .. ..+| |+.|+.. +.......|++- +.+|--+++ ..+
T Consensus 621 --~v~l~~~~~~~~~g~dG~tHq~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~~gP~~e~v~i~~~r~~-~~~~ 697 (886)
T 2qtc_A 621 --GFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVYYYITTLN-ENYH 697 (886)
T ss_dssp --CEEEEESCSTTTSTTTCTTTCCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHHHSTTCCCCEEEEECCS-CCBC
T ss_pred --CEEEEEecCcccCCCCCCccCCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhcCCCCCceEEEEEeCCc-cccC
Confidence 2222 1222333333 36552 22 7788 6777776 655555566552 122222221 000
Q ss_pred -HHHhh--hhH-HHHHHHHHhh----hHHHHHHHHHHHHHHHHhcccCCh
Q psy8838 210 -KKLRI--RMK-FEWAKIRQRR----EMKKEKAFQLEMSTKVKEGERFSA 251 (319)
Q Consensus 210 -rKlrk--R~k-F~~aKVrr~R----~~kke~~Fq~~L~~~lkeAeaf~a 251 (319)
..+.. ... ++.+.+.+.+ .+.+...++.++..++++|+.+..
T Consensus 698 ~p~~~~~~~~~~~gga~vlr~g~~~~~dVtLia~G~~v~~al~AAe~L~~ 747 (886)
T 2qtc_A 698 MPAMPEGAEEGIRKGIYKLETIEGSKGKVQLLGSGSILRHVREAAEILAK 747 (886)
T ss_dssp CCCCCTTCHHHHHHTCEEEEEECCSSEEEEEEECGGGHHHHHHHHHHHHH
T ss_pred CCCCCcchhhhccCceEEEEecCCCCCCEEEEeCcHHHHHHHHHHHHHhh
Confidence 01110 111 2323333443 678888999999999999887643
No 24
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=97.28 E-value=0.00015 Score=68.98 Aligned_cols=149 Identities=11% Similarity=0.007 Sum_probs=82.1
Q ss_pred cccCCCcccchhhhhcccccccccccHHHHHHHHHHHHHHhCCCeEEee---ecCCccccccchhhhhCcCceeeecCCC
Q psy8838 6 HRPHASNVAVVSIKVGAEIIKSEQLTINFPLGSPVWALIADNDSTAIEE---HFGQKFNSQRGLMDGFSQCQLMAVSLCG 82 (319)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~Ai~~al~~~m~~d~~v~iGE---~~GgvF~~t~GL~~~FG~~RV~~~~~~~ 82 (319)
|.-|.||---..- .+. ...||=++|+..++.+ .+.+++.|- .....+..-.-..+++| .+++
T Consensus 4 ~~~~~~~~~~~~~-~~~----~~~~~GneAva~~~~~---ag~~~v~~yPgtP~t~i~~~l~~~~~~~g-~~~i------ 68 (395)
T 1yd7_A 4 HHHHGSNKRFPFP-VGE----PDFIQGDEAIARAAIL---AGCRFYAGYPITPASEIFEAMALYMPLVD-GVVI------ 68 (395)
T ss_dssp --------CCSSC-CSE----EEEEEHHHHHHHHHHH---HTCCEEEECCBTTTBCHHHHHHHHGGGGT-CEEE------
T ss_pred cccccccccccCC-CCc----eEEeEHHHHHHHHHHH---cCCCEEEEEECcchHHHHHHHHHhhhhcC-cEEE------
Confidence 5567777533211 111 1246788888887554 444544454 22222111001122565 3566
Q ss_pred CCCcchhHHHHHhhcc--cCCcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhhhccCCCCccceEEEccC
Q psy8838 83 HSLIMELVFLTISQSA--LGLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPL 160 (319)
Q Consensus 83 dTPIsE~~ivG~avGa--~Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~y~~~g~f~~PvvIr~P~ 160 (319)
.+. +|.+.+|+++|+ +|.| |+ +..++.+|.+ ++|++.+.+ ..+.|+||+++.
T Consensus 69 ~~e-~E~~a~~~a~Gaa~aG~r-----~~--------------~~ts~~G~~~-~~d~l~~aa-----~~~~P~Vi~~~~ 122 (395)
T 1yd7_A 69 QME-DEIASIAAAIGASWAGAK-----AM--------------TATSGPGFSL-MQENIGYAV-----MTETPVVIVDVQ 122 (395)
T ss_dssp ECS-CHHHHHHHHHHHHHTTCC-----EE--------------EEEETTHHHH-HTTTCC---------CCCCEEEEEEC
T ss_pred EeC-CHHHHHHHHHHHHHhCCc-----EE--------------EEeCchHHHH-HHHHHHHHH-----hcCCCEEEEEee
Confidence 555 999999999999 9999 99 8888887766 788887643 568999999998
Q ss_pred CCccc---cc---cccccc--------cCCCcccCCCC-CCCcchhhhhH
Q psy8838 161 MPFYI---EK---IDKLNE--------RNNSIIEDPVI-PSQAPEKHAIV 195 (319)
Q Consensus 161 GP~Ii---e~---p~q~~E--------~~lPvv~pp~~-da~~~~~~a~~ 195 (319)
++... .. ++++.+ ..+|++.|.++ +++++.+.|.+
T Consensus 123 ~~~~~~g~~~~~~~sd~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~~ 172 (395)
T 1yd7_A 123 RSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFN 172 (395)
T ss_dssp --------------------------CCCCEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcccchhHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHHHH
Confidence 77654 22 333322 25678999887 88888888874
No 25
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=95.85 E-value=0.0014 Score=71.21 Aligned_cols=99 Identities=9% Similarity=0.028 Sum_probs=74.0
Q ss_pred ccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cCCcccCCCCcccccccccccccceeeEeccCCchhhhhHHH
Q psy8838 63 QRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LGLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTS 140 (319)
Q Consensus 63 t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~ 140 (319)
.+|+.+.||..+++ .++.+|.+.+|+++|| +|.| ++ +. ++.++|+...
T Consensus 44 ~~g~~~~~G~~~~v------~~~esE~aA~~aaiGAa~aGaR-----~~--------------t~-----Ts~~Gl~lm~ 93 (1231)
T 2c42_A 44 AQGRKNIFGQTLTI------REMQSEAGAAGAVHGALAAGAL-----TT--------------TF-----TASQGLLLMI 93 (1231)
T ss_dssp HHTCCCTTSCCCEE------EECSSHHHHHHHHHHHHHTTCC-----EE--------------EE-----ECHHHHHHHH
T ss_pred HcCCchhcCCceEE------EecCChHHHHHHHHHHHHcCCh-----Hh--------------hh-----ccHHHHHHHH
Confidence 46888999999999 9999999999999999 9999 77 33 5678888766
Q ss_pred hhh-hccCCCCccceEEEccCCCc------cccccccccc---cCCCcccCCCC-CCCcchhhh
Q psy8838 141 TSV-VLDNPVFNKNVKIDIPLMPF------YIEKIDKLNE---RNNSIIEDPVI-PSQAPEKHA 193 (319)
Q Consensus 141 ~~~-y~~~g~f~~PvvIr~P~GP~------Iie~p~q~~E---~~lPvv~pp~~-da~~~~~~a 193 (319)
-.. |+.+. ..|+||+++.++. +...|++..- .-+|++.|.++ +++++.+.|
T Consensus 94 e~l~~~ag~--~~P~Vi~va~R~g~~~glsi~~~hsd~~~ar~~G~~vl~pss~QEa~dl~~~A 155 (1231)
T 2c42_A 94 PNMYKISGE--LLPGVFHVTARAIAAHALSIFGDHQDIYAARQTGFAMLASSSVQEAHDMALVA 155 (1231)
T ss_dssp HHHHHHHHT--TCCCEEEEEECCCCSSSBCCSCCSHHHHTTTTSSCEEEECCSHHHHHHHHHHH
T ss_pred HHHHHHhCC--CCCEEEEECCCCccCCCCcCCCchhhHHHHhcCCcEEEECCCHHHHHHHHHHH
Confidence 544 55554 6899999987653 3344555322 33567888887 777777776
No 26
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=78.03 E-value=3 Score=44.40 Aligned_cols=81 Identities=14% Similarity=-0.026 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhCCC-eEEee-ecCCccccccchhhh--------hC--c--------CceeeecCCCCCCcchhHHH
Q psy8838 33 NFPLGSPVWALIADNDS-TAIEE-HFGQKFNSQRGLMDG--------FS--Q--------CQLMAVSLCGHSLIMELVFL 92 (319)
Q Consensus 33 ~~Ai~~al~~~m~~d~~-v~iGE-~~GgvF~~t~GL~~~--------FG--~--------~RV~~~~~~~dTPIsE~~iv 92 (319)
..+...+|.+++..||+ +++|- ...+.- -|..+.+. |- + .|++ + -|+|...+
T Consensus 432 tra~g~~L~~l~~~~p~~~vv~sADl~~Sn-~t~~f~~~t~~~~~~~~~~~P~d~~~~~~GR~i------~-GI~Eh~M~ 503 (845)
T 3ahc_A 432 PRALGAYCRDIIKNNPDSFRIFGPDETASN-RLNATYEVTDKQWDNGYLSGLVDEHMAVTGQVT------E-QLSEHQCE 503 (845)
T ss_dssp HHHHHHHHHHHHHHSTTTEEEEESSCTTTT-TCGGGGGTCCEECCSCCCCTTTCCSEESSCSEE------E-CSCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCCccc-cHHHHHhhcccccccccccCCcccccCCCCcEe------e-eecHHHHH
Confidence 46677999999999999 77765 322222 22222233 22 4 7999 9 99999999
Q ss_pred HHhhcc--cCCcccCCCCcccccccccccccceeeEeccCCchhhhhH
Q psy8838 93 TISQSA--LGLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLAS 138 (319)
Q Consensus 93 G~avGa--~Glr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldq 138 (319)
|++.|+ .|.. |+ |++ --.|..|+..+++|
T Consensus 504 gia~Glal~G~~-----~f---------~~t---~atFl~~~~~a~~q 534 (845)
T 3ahc_A 504 GFLEAYLLTGRH-----GI---------WSS---YESFVHVIDSMLNQ 534 (845)
T ss_dssp HHHHHHHHTTCE-----EE---------EEE---EHHHHGGGHHHHHH
T ss_pred HHHHHHHhcCCC-----Cc---------eec---chhhhchhhhHHHH
Confidence 999998 7876 66 232 23666666777777
No 27
>1hd6_A Pheromone ER-22; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=35.88 E-value=8.1 Score=26.53 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=14.8
Q ss_pred cCCCCCCcchhHHHHHhh
Q psy8838 79 SLCGHSLIMELVFLTISQ 96 (319)
Q Consensus 79 ~~~~dTPIsE~~ivG~av 96 (319)
.+|+||||.|+...|-..
T Consensus 16 q~c~n~~icel~v~~sc~ 33 (37)
T 1hd6_A 16 QDCENTPICELAVKGSCP 33 (37)
T ss_dssp TTSTTHHHHHHHHHHHSC
T ss_pred HHcCCccceeeeeeccCC
Confidence 479999999999888643
No 28
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=26.37 E-value=19 Score=30.99 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=17.3
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q psy8838 269 ESWKNVPESFIKEWTERKERHRNEKQAKESRKKA 302 (319)
Q Consensus 269 ~~w~~lp~~~ik~~~~~~~~~~~~~~~~~~~~~~ 302 (319)
.+|+-|+++=|.++|++-+++..++|.|.||.|.
T Consensus 185 ~g~~~l~~~ei~~~l~~~~~~~~~~~~~~~~~~~ 218 (219)
T 3h4p_a 185 DGVKIFEDEEIEKILDSMKAKPKKKTTKRSRRKS 218 (219)
T ss_dssp TEEEECCHHHHHHHHHHCC---------------
T ss_pred CCeEEcCHHHHHHHHHHhhcccccccchhhhhcc
Confidence 4688899999999999999999999999998763
No 29
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=24.76 E-value=1.3e+02 Score=24.01 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhccc-CChhhHHHHHHHHhcc--------ccccccccCCcHHHHHHHHHHHHh
Q psy8838 235 FQLEMSTKVKEGER-FSAEQYVENKLQLLHA--------EQLAESWKNVPESFIKEWTERKER 288 (319)
Q Consensus 235 Fq~~L~~~lkeAea-f~ae~YV~~~l~~a~~--------~~~p~~w~~lp~~~ik~~~~~~~~ 288 (319)
|-..|...+..-.. -..+.++.+.|-.-|. .-+|.+-. +|+++||-.|++.++
T Consensus 17 fVdRl~kal~~eq~~~~vK~~m~~tLlvQNANpdCk~Il~~~~~~~~-~~~e~Ik~~l~~~~~ 78 (87)
T 3g1g_A 17 FANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLT-TPGEIIKYVLDRQKT 78 (87)
T ss_dssp HHHHHHHHHHHSSSCGGGHHHHHHHHHHHHSCHHHHHHHHTSCTTCC-SHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCHHHHHHHHhCCCCCC-ChHHHHHHHHHHhhc
Confidence 33444444443222 2357788877777775 34555555 999999999997654
No 30
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=20.98 E-value=59 Score=25.99 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=17.6
Q ss_pred ccccccccC----CcHHHHHHHHHHHH
Q psy8838 265 EQLAESWKN----VPESFIKEWTERKE 287 (319)
Q Consensus 265 ~~~p~~w~~----lp~~~ik~~~~~~~ 287 (319)
+.+|.+|.- ||+.+.-+...-.+
T Consensus 65 ~~~P~g~~rv~v~lP~~~a~~v~~~~~ 91 (101)
T 2w7n_A 65 KNLPEGYARVTAVLPEHQAYIVRKWEA 91 (101)
T ss_dssp TCCCTTEEEEEEEECHHHHHHHHHHHH
T ss_pred cCCCCCeeEEeeecCHHHHHHHHHHHH
Confidence 479999998 99988776655444
Done!