RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8838
(319 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 2e-08
Identities = 53/295 (17%), Positives = 91/295 (30%), Gaps = 112/295 (37%)
Query: 1 MGM-LRHRP------------HASNVAVVSIKVGAEIIKS--EQLTINFPLGSPVWALIA 45
MGM L H + SI +I+ + LTI+F G I
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSI---LDIVINNPVNLTIHF--GGEKGKRIR 1685
Query: 46 DNDSTAIEEHFGQK-------------------FNSQRGLMD--GFSQCQLMAVSL---- 80
+N S I E F S++GL+ F+Q L +
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745
Query: 81 --------------CGHSLIME---LV----FLTISQSAL------GLTVLKNNPTTSAH 113
GHSL E L ++I S + G+T+ P
Sbjct: 1746 DLKSKGLIPADATFAGHSL-GEYAALASLADVMSIE-SLVEVVFYRGMTMQVAVPRDELG 1803
Query: 114 HSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPLMPFYIEKIDKLNE 173
S GM +A V F++ + ++++ +
Sbjct: 1804 RSN--------YGM--------IAINPGRVAAS---FSQEALQYV---------VERVGK 1835
Query: 174 RNNSIIEDPV---IPSQ----APEKHAI--VMIIRRRRKMKKHKLKKLRIRMKFE 219
R ++E V + +Q A + A+ V + K++K + +L+ + E
Sbjct: 1836 RTGWLVE-IVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLE 1889
Score = 40.4 bits (94), Expect = 7e-04
Identities = 30/145 (20%), Positives = 46/145 (31%), Gaps = 38/145 (26%)
Query: 7 RP----HASNVAVVSIKVGAEI-IKSEQLTINFP--LGSPVWALIADNDSTAIEEHFGQK 59
RP H S + V + QL F L P AD++ T E G K
Sbjct: 7 RPLTLSHGS--LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG-K 63
Query: 60 F------NSQRGLMDGFSQCQLMAVS------LCG---HSLIMELVFLTISQSALG--LT 102
F + + F Q + ++ L G H+L +L L + + L
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL--LQENDTTLVKTKE 121
Query: 103 VLK---------NNPTTSAHHSMLL 118
++K P +S L
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALF 146
Score = 28.9 bits (64), Expect = 3.3
Identities = 34/197 (17%), Positives = 59/197 (29%), Gaps = 62/197 (31%)
Query: 37 GSPVWAL-IADNDSTAIEEHFGQKFNSQRGLMDGFSQCQLMAVSL---------CGH--S 84
G P L I++ ++++ K NS + + +SL G S
Sbjct: 333 GVPSPMLSISNLTQEQVQDYV-NKTNSH------LPAGKQVEISLVNGAKNLVVSGPPQS 385
Query: 85 LI-MELVFLTIS------QS---------ALGLTVLKNNPTTSAHHSMLLFSSMKCVGMD 128
L + L QS L P S HS LL + + D
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL---PVASPFHSHLLVPASDLINKD 442
Query: 129 -KSYSLPPLASTSTSVVLDNPVFN----KNVKIDIPLMPFYIEKIDKLNER-NNSIIEDP 182
++ A + PV++ +++ ++ER + II P
Sbjct: 443 LVKNNVSFNAKD-----IQIPVYDTFDGSDLR----------VLSGSISERIVDCIIRLP 487
Query: 183 V---IPSQAPEKHAIVM 196
V +Q H +
Sbjct: 488 VKWETTTQFKATHILDF 504
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 1e-04
Identities = 47/301 (15%), Positives = 89/301 (29%), Gaps = 93/301 (30%)
Query: 43 LIADN--DSTAIEEHFGQKFNSQ---------RGLMDGFSQCQLMAVSLCGHSL------ 85
L+ N ++ A FN + + D S +SL HS+
Sbjct: 248 LVLLNVQNAKAWN-----AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 86 IMELV--FLTISQSALGLTVLKNNPTTSAHHSMLLFSSMKCVGMD-----KSYSLPPLAS 138
+ L+ +L L VL NP S+ + G+ K + L +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPR---RLSI--IAESIRDGLATWDNWKHVNCDKLTT 357
Query: 139 T-STSV-VLDNP----------VFNKNVKIDIPLM------PFYIEKIDKLNE-RNNSII 179
+S+ VL+ VF + I L+ + + +N+ S++
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 180 EDPVIPSQAPEKHAIVMIIRRRRKMKKHKLKKLRIRMKFEWAKIRQRREM--------KK 231
E ++ K + + + +K K+ +
Sbjct: 418 E-------------------KQPKESTISIPSIYLELK---VKLENEYALHRSIVDHYNI 455
Query: 232 EKAFQLEMSTKVKEGERFSAEQYVENKL--QLLHAEQLAESWKNVPESFIK-EWTERKER 288
K F + +QY + + L + E E F+ + E+K R
Sbjct: 456 PKTFDSDDLIPPYL------DQYFYSHIGHHLKNIEH-PERMTLFRMVFLDFRFLEQKIR 508
Query: 289 H 289
H
Sbjct: 509 H 509
Score = 34.4 bits (78), Expect = 0.055
Identities = 44/365 (12%), Positives = 98/365 (26%), Gaps = 122/365 (33%)
Query: 21 GAEIIK---SEQLTINFPLGSPVWALIA--DNDSTAIEEHFGQKFNSQRGLMDGFSQCQL 75
E+++ E L IN+ + + I + + + QR + +Q
Sbjct: 75 QEEMVQKFVEEVLRINYKF---LMSPIKTEQRQPSMMTR----MYIEQRDRLYNDNQ-VF 126
Query: 76 MAVSLCGHSLIMEL-VFLTISQSALGLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLP 134
++ ++L L + A + + +L G K++
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLI----------DGVL--------GSGKTW--- 165
Query: 135 PLASTSTSVVLDNPV---FNKNVKIDIPLMPFYIEKIDKLNERNNSIIEDPVIPSQAPEK 191
+A V L V + + F++ N +N + E + Q
Sbjct: 166 -VAL---DVCLSYKVQCKMDFKI--------FWL------NLKNCNSPETVLEMLQKLLY 207
Query: 192 HAIVMIIRRRRKMKKHKLKKLRIRMKFEWAKIRQRREMKKE------------------K 233
R I+++ + RR +K +
Sbjct: 208 QIDPNWTSRSDHSS-------NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 234 AFQLE----MSTKVKE------GERFSAEQYVENKLQLLHAE--QLAESWKNV-----PE 276
AF L ++T+ K+ + + + L E L + + P
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 277 S--------------FIKEWTERKE--RHRNEKQAKESRKKALHSI-------YVKDWGV 313
I++ + +H N + + +L+ + V
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 314 DFSKN 318
F +
Sbjct: 381 -FPPS 384
Score = 30.6 bits (68), Expect = 0.77
Identities = 33/234 (14%), Positives = 68/234 (29%), Gaps = 74/234 (31%)
Query: 3 MLRHRP-HASNVAVVSIKVGAEIIKS--------------EQLTINFPLGSPV------- 40
+R N V+ II+S ++L++ FP + +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHIPTILLSL 394
Query: 41 -WALIADNDSTAIEEHFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSAL 99
W + + K + L++ Q + +S+ S+ +EL ++ AL
Sbjct: 395 IWF----DVIKSDVMVVVNKLHK-YSLVEK--QPKESTISI--PSIYLELKVKLENEYAL 445
Query: 100 GLTVL----------KNNPTTS----------AHHSMLLFSSMKCVGMDKSYSLPP---- 135
+++ ++ HH +K + + +L
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-------LKNIEHPERMTLFRMVFL 498
Query: 136 --------LASTSTSVVLDNPVFNKNVKIDIPLMPFYIEKIDKLNERNNSIIED 181
+ ST+ + N + YI D ER + I D
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILN--TLQQLKFYKPYICDNDPKYERLVNAILD 550
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.6 bits (89), Expect = 0.001
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 264 AEQLAESWKNVPESFIKEWTERKERHRNEKQAKESRKKA 302
A++L + PES I++W E + + E A +
Sbjct: 77 ADRLTQE----PES-IRKWREEQRKRLQELDAASKVMEQ 110
Score = 34.4 bits (78), Expect = 0.029
Identities = 16/103 (15%), Positives = 39/103 (37%), Gaps = 28/103 (27%)
Query: 179 IEDPVIPSQAPEKHAIVMIIRRRRKMKKHKLKKLRIRMKFEWAKIRQRREMKKEKAFQLE 238
I +Q PE IR+ R+ ++ +L++ E+ ++ +
Sbjct: 74 IAQADRLTQEPES------IRKWREEQRKRLQE------------LDAASKVMEQEWREK 115
Query: 239 MSTKVKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKE 281
++E + +EQ +NK+ A+ ++F ++
Sbjct: 116 AKKDLEEWNQRQSEQVEKNKINNRIAD----------KAFYQQ 148
Score = 34.0 bits (77), Expect = 0.031
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 28/90 (31%)
Query: 215 RMKFEWAKIRQRREMKKEKAFQLEMSTKVKEGERFSAEQYVENKLQLLHAEQLAESWKNV 274
R+ E IR+ RE E+ +L+ E +A + + + W+
Sbjct: 79 RLTQEPESIRKWRE---EQRKRLQ--------ELDAAS------------KVMEQEWR-- 113
Query: 275 PESFIKEWTERKERHRN--EKQAKESRKKA 302
E K+ E +R EK +R
Sbjct: 114 -EKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
Score = 32.8 bits (74), Expect = 0.092
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 28/92 (30%)
Query: 166 EKIDKLNERNNSIIEDPVIPSQAPEKHAIVMIIRRRRKMKKHKLKKLRIRMKFEWAKIRQ 225
E I K E +++ A K ++ ++ K L EW +
Sbjct: 85 ESIRKWREEQRKRLQE----LDAASK-------VMEQEWREKAKKDLE-----EWNQ--- 125
Query: 226 RREMKKEKAFQLEMSTKVKEGERFSAEQYVEN 257
R+ + EK K R + + + +
Sbjct: 126 RQSEQVEKN---------KINNRIADKAFYQQ 148
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 33.5 bits (77), Expect = 0.10
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 11/114 (9%)
Query: 190 EKHAIVMIIRRRRKMKKHKLKKLRIRMKFEWAKIRQRREMKKEKAFQLEMSTKVKEGERF 249
K + + RR M K +LKKL+I + R +++ K + + K+ + +R
Sbjct: 887 LKAIVYLQCCYRRMMAKRELKKLKI----------EARSVERYKKLHIGLENKIMQLQRK 936
Query: 250 SAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTERKERHRNEKQAKESRKKAL 303
EQ E K L L ++ E ++ ER E + +R +L
Sbjct: 937 IDEQNKEYKSLLEKMNNLEITYSTETEK-LRSDVERLRMSEEEAKNATNRVLSL 989
Score = 31.6 bits (72), Expect = 0.36
Identities = 14/102 (13%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Query: 208 KLKKLRIRMKFEWAKIRQRREMKKEKAFQLEMSTKVKEGERFSAEQYVENKLQLLHAEQL 267
+ KKL I ++ + +++++ + + ++ L E + + + + ++ L ++
Sbjct: 918 RYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERL---RM 974
Query: 268 AESWKNVPESFIKEWTERKERHRNEKQAKESRKKALHSIYVK 309
+E + + E + R E ++ KK + K
Sbjct: 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold
P-loop, transferase; HET: 5GP; 2.20A {Salmonella
typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Length = 180
Score = 31.3 bits (71), Expect = 0.27
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 263 HAEQLAESWKNVP-----ESFIKEWTERKERHRNE 292
HAE L V + E R + H++
Sbjct: 15 HAEALIGDAPQVLYIATSQILDDEMAARIQHHKDG 49
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila}
Length = 185
Score = 30.0 bits (67), Expect = 0.68
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 17/95 (17%)
Query: 152 KNVKIDIPLMPFYIEKIDKLNERNN--SIIEDPVI---------PSQAPEKHAIVMIIRR 200
K + +D P +I N R + +I+D ++ S+A R
Sbjct: 20 KRLWLD----PNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRH 75
Query: 201 RRKMKKHKLKKLRIRMKFEW-AKIR-QRREMKKEK 233
K+ + R+ K W + R RR ++K +
Sbjct: 76 TGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYR 110
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.73
Identities = 7/17 (41%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 205 KKHKLKKLRIRMKFEWA 221
+K LKKL+ +K +A
Sbjct: 18 EKQALKKLQASLKL-YA 33
Score = 28.4 bits (62), Expect = 2.0
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 118 LFSSMKCVGMDKSYSLPPLASTST 141
L +S+K D S P LA +T
Sbjct: 25 LQASLKLYADD---SAPALAIKAT 45
Score = 28.0 bits (61), Expect = 2.7
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 7/27 (25%)
Query: 225 QRREMKKEKAFQLEMSTKVKEGERFSA 251
+++ +KK L+ S K+ + SA
Sbjct: 18 EKQALKK-----LQASLKLYADD--SA 37
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 29.1 bits (64), Expect = 1.3
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 275 PESFIKEWTERKERHRNEKQAKESRKKA 302
PES I++W E + + E A +
Sbjct: 99 PES-IRKWREEQRKRLQELDAASKVMEQ 125
>2xlk_A CSY4 endoribonuclease; hydrolase-RNA complex, endoribonuclease,
crispr; 1.80A {Pseudomonas aeruginosa} PDB: 2xlj_A
2xli_A
Length = 191
Score = 28.3 bits (63), Expect = 2.7
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 185 PSQAPEKHAIVMIIRRRRKMKKHKLKKLRIRMKFEW-AKIRQRREMKKEKAFQL 237
P+ P + R + K +L++ +R + R+R + L
Sbjct: 92 PAVVPHPTPYRQVSRVQAKSNPERLRRRLMRRHDLSEEEARKRIPDTVARTLDL 145
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 28.4 bits (64), Expect = 3.1
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 207 HKLKKLRIRM-KFEWAKIRQRREMKKEK--AFQLEMSTKVKEGERFSAEQYVENKLQLLH 263
K ++ R + I+ R++ + A + ++ + + S + + L LL
Sbjct: 194 GKSQRARALLLAELEKIIKARQQQPPSEEDALGILLAARDDNNQPLSLPELKDQILLLLF 253
Query: 264 A 264
A
Sbjct: 254 A 254
>1x6i_A Hypothetical protein YGFY; structural genomics, transcriptional
regulation, structure 2 function project, S2F, unknown
function; 1.20A {Escherichia coli} PDB: 1x6j_A
Length = 91
Score = 26.9 bits (60), Expect = 3.2
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 14/64 (21%)
Query: 156 IDIPLMPFYIEKIDKLNERNNSI------IEDPVI--------PSQAPEKHAIVMIIRRR 201
+DI +MPF+ + D L++ I +DP + E +V +I+ R
Sbjct: 23 LDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTR 82
Query: 202 RKMK 205
+ +
Sbjct: 83 NRER 86
>1d3y_A DNA topoisomerase VI A subunit; DNA binding protein, SPO11 homolog;
HET: DNA; 2.00A {Methanocaldococcus jannaschii} SCOP:
e.12.1.1
Length = 301
Score = 28.3 bits (62), Expect = 3.4
Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 196 MIIRRRRKMKKHKLKKLRIRMKFEWAKIRQRREMKKEKAFQLEMSTKVKEGERFSAEQYV 255
+ + +++K +R EW K ++ +A E + K G ++ Y+
Sbjct: 233 LKEQDIKRIKDGLKNDDFVRSFPEWQKALKQMLDMGVRA---EQQSLAKYGLKYVVNTYL 289
Query: 256 ENKLQ 260
K++
Sbjct: 290 PEKIK 294
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 28.5 bits (64), Expect = 4.1
Identities = 7/152 (4%), Positives = 33/152 (21%), Gaps = 34/152 (22%)
Query: 186 SQAPEKHAIVMII----------RRRRKMKKHKLK-----------------------KL 212
+ K + + + + +
Sbjct: 755 ASEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQE 814
Query: 213 RIRMKFEWAKIRQRREMKKEKAFQLEMSTKVKEGERFSAEQYVENKLQLLHAEQLAESWK 272
++ + ++ + + K + F E + + + + K
Sbjct: 815 VSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQK 874
Query: 273 NVPESFIKEWTERKERHRNEKQAKESRKKALH 304
+ ++++ ++ N K +
Sbjct: 875 KI-AVLLQKYNRILKKLENWATTKSVYLGSNE 905
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 28.3 bits (63), Expect = 4.7
Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 4/117 (3%)
Query: 190 EKHAIVMI---IRRRRKMKKHKLKKLRIRMKFEWAKIRQRREMKKEKAFQLEMSTKVKEG 246
+ +I I +R + L + RQ EM+ + + ++
Sbjct: 817 QLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKA 876
Query: 247 ERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTERKERHRNEKQAKESRKKAL 303
E E ++ L E + E E E + R +KQ E +
Sbjct: 877 EAELKELEQKHTQLCEEKNLLQEKLQAETE-LYAEAEEMRVRLAAKKQELEEILHEM 932
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 27.5 bits (60), Expect = 6.2
Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 19/105 (18%)
Query: 199 RRRRKMKKHKLKKLRIRMKF-EWAKIRQRREMKKEKAFQLEMSTKVKEGERFSAEQYVEN 257
+ KK+ L K AKI + + K +A + + +K
Sbjct: 314 TETHERKKNPLTNNNALFKLNPAAKIVKEQAKKAAEASKAKRQATLKA------------ 361
Query: 258 KLQLLHAEQLAESWKNVPESFIKEWTERKERHRNEKQAKESRKKA 302
+ A++ K +++I + + E + + +++ A
Sbjct: 362 ------NRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIA 400
>2jr5_A UPF0350 protein VC_2471; structure, structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium, NESG; NMR {Vibrio cholerae}
Length = 94
Score = 25.8 bits (57), Expect = 8.1
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 14/64 (21%)
Query: 156 IDIPLMPFYIEKIDKLNERNNSI------IEDPVI--------PSQAPEKHAIVMIIRRR 201
+D+ +MPF+ E D L E +DP + + A+V I
Sbjct: 21 LDVVIMPFFEECFDSLTESEQDDFVALLESDDPDLFAWVMGHGRCENLGLAAMVDKIVAH 80
Query: 202 RKMK 205
K
Sbjct: 81 NLSK 84
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM,
splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo
sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Length = 437
Score = 27.1 bits (59), Expect = 8.6
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 265 EQLAESWKNVPESFIKEWTERKERHRNEKQAKESRK 300
+ + P + + ER ER R EK + ++
Sbjct: 46 REFEDPRDAPPPTRAETREERMERKRREKIERRQQE 81
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 27.1 bits (59), Expect = 9.4
Identities = 18/116 (15%), Positives = 43/116 (37%), Gaps = 7/116 (6%)
Query: 175 NNSIIEDPVIPSQAPEKHAIVMIIRRRRKMKKHKLKKLRIRMKFEWAKIRQRREMKKEKA 234
+ V P + +++ + + K + +K I + E I +EK
Sbjct: 47 HYIQESSKVFPDTKLPRSSLIAENKIYKFKKVKRKRKQIILQQHE---INIFLRDYQEKQ 103
Query: 235 FQLEMSTKVKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTERKERHR 290
+ +E + + + +L +QL + KN E+F + +K+++
Sbjct: 104 QTFNKINRPEETQE-DDKDLPNFERKL---QQLEKELKNEDENFELDINSKKDKYA 155
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.375
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,740,042
Number of extensions: 272996
Number of successful extensions: 657
Number of sequences better than 10.0: 1
Number of HSP's gapped: 632
Number of HSP's successfully gapped: 46
Length of query: 319
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 225
Effective length of database: 4,077,219
Effective search space: 917374275
Effective search space used: 917374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.5 bits)