RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8838
         (319 letters)



>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter
           sphaeroides [TaxId: 1063]}
          Length = 153

 Score = 27.0 bits (59), Expect = 2.1
 Identities = 6/47 (12%), Positives = 13/47 (27%)

Query: 102 TVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNP 148
             L N P  +  H++   ++   +G      + P             
Sbjct: 74  LTLINPPENTMPHNIDFHAATGALGGGGLTLINPGEKVVLRFKATRA 120


>d1d3ya_ e.12.1.1 (A:) DNA topoisomerase IV, alpha subunit {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 298

 Score = 26.5 bits (58), Expect = 4.9
 Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 187 QAPEKHAIVMIIRRRRKMKKHKLKKLRIRMKFEWAKIRQRREMKKEKAFQLEMSTKVKEG 246
              +     +  +  +++K        +R   EW K  ++      +A   E  +  K G
Sbjct: 221 IDYDLPTHPLKEQDIKRIKDGLKNDDFVRSFPEWQKALKQMLDMGVRA---EQQSLAKYG 277

Query: 247 ERFSAEQYVENKLQ 260
            ++    Y+  K++
Sbjct: 278 LKYVVNTYLPEKIK 291


>d1zj8a4 d.134.1.1 (A:162-326) Sulfite reductase NirA {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 165

 Score = 25.8 bits (56), Expect = 6.4
 Identities = 10/41 (24%), Positives = 15/41 (36%)

Query: 274 VPESFIKEWTERKERHRNEKQAKESRKKALHSIYVKDWGVD 314
           VP   + E          +   +  R KA     +KDWG+ 
Sbjct: 100 VPLGEVPEVWAAVTSVFRDYGYRRLRAKARLKFLIKDWGIA 140


>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus
           pneumoniae, Ermam [TaxId: 1313]}
          Length = 245

 Score = 25.6 bits (55), Expect = 8.8
 Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 4/82 (4%)

Query: 189 PEKHAIVMIIRRRRKMKKHKLKKLRIRMKFEWAKIRQRREM--KKEKAFQLEMSTKVKEG 246
           P+     ++I+  R       K  ++   F    + +       K +  Q     KV   
Sbjct: 164 PKPKVNSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKNQFHQAMKHAKVNNL 223

Query: 247 ERFSAEQYVE--NKLQLLHAEQ 266
              + EQ +   N   L +  +
Sbjct: 224 STITYEQVLSIFNSYLLFNGRK 245


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0545    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,153,065
Number of extensions: 53257
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 15
Length of query: 319
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,240,546
Effective search space: 290287764
Effective search space used: 290287764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)