BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8839
(74 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State
Length = 593
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 18 LGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71
L + + DE L AP+ +F+P G+ G K+ Q R+ DPEDPHD YL T
Sbjct: 344 LLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLAT 397
>pdb|2RLI|A Chain A, Solution Structure Of Cu(i) Human Sco2
Length = 171
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 36 FHPELLGLTGTKIVVTQSRAV------SDPEDPHDGDYLRETSVS 74
FHP LLGLTG+ V Q+ + P+D D DY+ + S++
Sbjct: 89 FHPRLLGLTGSTKQVAQASHSYRVYYNAGPKD-EDQDYIVDHSIA 132
>pdb|2V5O|A Chain A, Structure Of Human Igf2r Domains 11-14
Length = 627
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 33 LGIFHPELLGLTGTKIVVTQSRA 55
LG+ H + LG+ G K+VVT S+
Sbjct: 550 LGLVHTQKLGVIGDKVVVTYSKG 572
>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human
Gelsolin Segment 1
Length = 375
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 22 ILVADECLIAPLGIFHPELLGLTGTKI 48
I + +E AP +FHP +LGL I
Sbjct: 248 ITIGNERFRAPEALFHPSVLGLESAGI 274
>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B63|G Chain G, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
Length = 365
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 22 ILVADECLIAPLGIFHPELLGLTGTKI 48
I + +E AP +FHP +LGL I
Sbjct: 243 ITIGNERFRAPEALFHPSVLGLESAGI 269
>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1
Complex
Length = 375
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 19 GFDILVADECLIAPLGIFHPELLGLTGTKI 48
G I + +E AP +FHP +LGL I
Sbjct: 245 GQVITIGNERFRAPEALFHPSVLGLESAGI 274
>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B63|I Chain I, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
Length = 365
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 22 ILVADECLIAPLGIFHPELLGLTGTKI 48
I + +E AP +FHP +LGL I
Sbjct: 243 ITIGNERFRAPEALFHPSVLGLESAGI 269
>pdb|4AM6|A Chain A, C-terminal Domain Of Actin-related Protein Arp8 From S.
Cerevisiae
pdb|4AM6|B Chain B, C-terminal Domain Of Actin-related Protein Arp8 From S.
Cerevisiae
pdb|4AM7|A Chain A, Adp-bound C-terminal Domain Of Actin-related Protein Arp8
From S. Cerevisiae
pdb|4AM7|B Chain B, Adp-bound C-terminal Domain Of Actin-related Protein Arp8
From S. Cerevisiae
Length = 655
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 20 FDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPE 60
++ + DE ++APL +F P++ L T S PE
Sbjct: 370 YEFKLFDEVMLAPLALFFPQIFKLIRTSSHKNSSLEFQLPE 410
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,248,901
Number of Sequences: 62578
Number of extensions: 72835
Number of successful extensions: 116
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 9
length of query: 74
length of database: 14,973,337
effective HSP length: 44
effective length of query: 30
effective length of database: 12,219,905
effective search space: 366597150
effective search space used: 366597150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)