BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8839
(74 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0IEG8|ARP8_AEDAE Actin-related protein 8 OS=Aedes aegypti GN=Arp8 PE=3 SV=1
Length = 562
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 20 FDILVADECLIAPLGIFHPELLGLTG----TKIVVTQSRAVSDPEDPHDGDYLRET 71
F + + DE ++APLG+FH ELL +TG T + SRA PED D +YLRET
Sbjct: 342 FTLQIGDEAIVAPLGLFHTELLSVTGVNKSTPMTQKPSRAQPHPEDCFDAEYLRET 397
>sp|Q1LZF2|ARP8_BOVIN Actin-related protein 8 OS=Bos taurus GN=ACTR8 PE=2 SV=1
Length = 624
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 18 LGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71
L + + DE L AP+ +F+P G+ G K+ Q R+ DPEDPHD YL T
Sbjct: 375 LLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEQYLLAT 428
>sp|D2I1E3|ARP8_AILME Actin-related protein 8 OS=Ailuropoda melanoleuca GN=ACTR8 PE=3
SV=1
Length = 624
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 18 LGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71
L + + DE L AP+ +F+P G+ G K+ Q R+ DPEDPHD YL T
Sbjct: 375 LLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLAT 428
>sp|Q5RDA1|ARP8_PONAB Actin-related protein 8 OS=Pongo abelii GN=ACTR8 PE=2 SV=1
Length = 624
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 18 LGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71
L + + DE L AP+ +F+P G+ G K+ Q R+ DPEDPHD YL T
Sbjct: 375 LLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLAT 428
>sp|Q8R2S9|ARP8_MOUSE Actin-related protein 8 OS=Mus musculus GN=Actr8 PE=2 SV=1
Length = 624
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 18 LGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71
L + + DE L AP+ +F+P G+ G K+ Q R+ DPEDPHD YL T
Sbjct: 375 LLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLAT 428
>sp|Q9H981|ARP8_HUMAN Actin-related protein 8 OS=Homo sapiens GN=ACTR8 PE=1 SV=2
Length = 624
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 18 LGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71
L + + DE L AP+ +F+P G+ G K+ Q R+ DPEDPHD YL T
Sbjct: 375 LLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLAT 428
>sp|B5X2S3|ARP8_SALSA Actin-related protein 8 OS=Salmo salar GN=actr8 PE=2 SV=1
Length = 632
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 18 LGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71
L + + + DE L AP+ +F+P G+ G K+ Q R+ DPEDPHD YL T
Sbjct: 380 LLYQVRLGDEKLQAPMALFYPTTFGIVGQKMTSLQHRSQGDPEDPHDEHYLLGT 433
>sp|Q9VX09|ARP8_DROME Actin-related protein 8 OS=Drosophila melanogaster GN=Arp8 PE=1
SV=1
Length = 607
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/58 (53%), Positives = 38/58 (65%), Gaps = 5/58 (8%)
Query: 18 LGFDILVADECLIAPLGIFHPELLGLTG-TKIVVTQSRAVSDP---EDPHDGDYLRET 71
L + I V DE L+APL +FH ELL +TG TK V TQ +AV D ED D +YL+ET
Sbjct: 371 LRYTIQVGDEALMAPLALFHTELLNITGRTKAVFTQ-QAVQDQYDCEDCFDAEYLKET 427
>sp|Q29G73|ARP8_DROPS Actin-related protein 8 OS=Drosophila pseudoobscura pseudoobscura
GN=Arp8 PE=3 SV=2
Length = 608
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 18 LGFDILVADECLIAPLGIFHPELLGLTG-TKIVVTQS--RAVSDPEDPHDGDYLRET 71
L + + V DE ++APL FH ELL +TG + TQ + D ED D +YLRET
Sbjct: 365 LRYTLQVGDEAIMAPLAFFHTELLNITGKARKAFTQQPPQEQYDCEDCFDAEYLRET 421
>sp|P59679|ARP8_DANRE Actin-related protein 8 OS=Danio rerio GN=actr8 PE=2 SV=1
Length = 623
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 17 LLGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71
+L + + + DE L AP+ +F+P G+ G ++ R+ D EDPHD +L T
Sbjct: 374 VLLYQLRLGDEKLQAPMTLFYPAAFGIVGQRMTSLLHRSQGDAEDPHDEHFLLTT 428
>sp|Q5RH02|SCO2_DANRE Protein SCO2 homolog, mitochondrial OS=Danio rerio GN=sco2 PE=3
SV=1
Length = 279
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 7/44 (15%)
Query: 36 FHPELLGLTGTKIVVTQS------RAVSDPEDPHDGDYLRETSV 73
FHP L+GLTG+ V Q+ A + P+D DGDY+ + S+
Sbjct: 196 FHPRLVGLTGSAEEVKQAGRDFRVYASNGPKD-EDGDYIVDHSI 238
>sp|Q960A0|YS9A_CAEEL Putative G-protein coupled receptor B0244.10 OS=Caenorhabditis
elegans GN=B0244.10 PE=3 SV=2
Length = 582
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 1 MKERSSREEYTFFTVYLLGFDILVADECLIAPLGIFH 37
M+ R+++T T+Y++ F I++ C+ P G+F
Sbjct: 363 MRPLVYRDKFTLKTIYIIAFAIVLFSVCVAIPFGLFQ 399
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,347,660
Number of Sequences: 539616
Number of extensions: 943892
Number of successful extensions: 1808
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1794
Number of HSP's gapped (non-prelim): 13
length of query: 74
length of database: 191,569,459
effective HSP length: 45
effective length of query: 29
effective length of database: 167,286,739
effective search space: 4851315431
effective search space used: 4851315431
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)