Query psy8839
Match_columns 74
No_of_seqs 51 out of 53
Neff 2.8
Searched_HMMs 29240
Date Fri Aug 16 20:28:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8839.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8839hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4am6_A Actin-like protein ARP8 99.1 3.3E-11 1.1E-15 98.7 2.1 60 8-67 354-419 (655)
2 4fo0_A Actin-related protein 8 98.9 9.8E-10 3.3E-14 82.8 3.1 62 10-71 336-397 (593)
3 3qb0_A Actin-related protein 4 96.9 0.00033 1.1E-08 54.9 1.8 47 20-71 285-332 (498)
4 2p5d_A UPF0310 protein mjecl36 64.1 1.5 5.2E-05 29.0 0.2 37 21-63 37-84 (147)
5 3eop_A Thymocyte nuclear prote 60.8 1.9 6.6E-05 30.7 0.2 37 21-63 51-93 (176)
6 2eve_A Hypothetical protein ps 56.4 2.2 7.6E-05 29.8 -0.1 37 21-63 40-82 (157)
7 3dwl_A Actin-related protein 3 56.0 3 0.0001 31.3 0.6 27 18-44 276-302 (427)
8 3lrx_A Putative hydrogenase; a 55.6 3.2 0.00011 26.6 0.5 17 22-38 1-19 (158)
9 2ar1_A Hypothetical protein; s 50.3 3.2 0.00011 29.3 -0.1 37 21-63 58-100 (172)
10 1k8k_A ARP3, actin-like protei 42.0 9.5 0.00032 27.3 1.3 26 18-43 265-290 (418)
11 1k8k_B ARP2, actin-like protei 33.7 18 0.00063 26.0 1.7 25 21-45 251-275 (394)
12 2hd9_A UPF0310 protein PH1033; 24.6 19 0.00064 23.6 0.4 8 21-28 34-41 (145)
No 1
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=99.06 E-value=3.3e-11 Score=98.75 Aligned_cols=60 Identities=20% Similarity=0.391 Sum_probs=47.8
Q ss_pred chheec----cceeeeeEEEccchhhcccccccccccccccCCceeee--ccCCCCCCCCCCChhh
Q psy8839 8 EEYTFF----TVYLLGFDILVADECLIAPLGIFHPELLGLTGTKIVVT--QSRAVSDPEDPHDGDY 67 (74)
Q Consensus 8 ~~~~~f----~~~~~kY~~kVgDE~m~APL~LFyP~lf~I~~~~~~~~--q~r~~~DpED~~D~~Y 67 (74)
.+|+++ ++.+.+|+|+||||+++|||+||+|++|++++....+- -.+..++++|+||+.|
T Consensus 354 q~~~f~~r~P~~~~~ky~i~vgdErflaPe~lF~Pei~~~~~~~~~~~~~~~~~~~~s~d~y~~~~ 419 (655)
T 4am6_A 354 QLYNFMNRSPNQPTEKYEFKLFDEVMLAPLALFFPQIFKLIRTSSHKNSSLEFQLPESRDLFTNEL 419 (655)
T ss_dssp EEEEEEECCSSSCEEEEEEEESSHHHHHHHGGGSTHHHHHTSCCCCCCHHHHTTSCCCBCTTTCCB
T ss_pred hhhcceeccCCCCCcceEEEECCeehhCchhcCChhhcccccccccccchhhhhcCccccccCCCC
Confidence 455554 46788999999999999999999999999999875210 0245899999999766
No 2
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=98.86 E-value=9.8e-10 Score=82.82 Aligned_cols=62 Identities=37% Similarity=0.600 Sum_probs=40.3
Q ss_pred heeccceeeeeEEEccchhhcccccccccccccccCCceeeeccCCCCCCCCCCChhhhhhc
Q psy8839 10 YTFFTVYLLGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71 (74)
Q Consensus 10 ~~~f~~~~~kY~~kVgDE~m~APL~LFyP~lf~I~~~~~~~~q~r~~~DpED~~D~~YL~eT 71 (74)
+..-+.++.+|++++|||+++||+++|+|+++++.+......+.+...+|+||+++.+|.++
T Consensus 336 ~~~p~~~~~~~~~~~~~E~~~~p~~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (593)
T 4fo0_A 336 IRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLAT 397 (593)
T ss_dssp ECCTTSCEEEEEEEECTHHHHHHHTTTSGGGGCCCSSCCEEECC------------------
T ss_pred cccCCCCceeeEEeccchhhcCchhhcChhhhcccccccchhhhhcccCcccchhhhhhhhc
Confidence 33446788999999999999999999999999999999999999999999999999998654
No 3
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.00033 Score=54.86 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=38.5
Q ss_pred eEEEccch-hhcccccccccccccccCCceeeeccCCCCCCCCCCChhhhhhc
Q psy8839 20 FDILVADE-CLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71 (74)
Q Consensus 20 Y~~kVgDE-~m~APL~LFyP~lf~I~~~~~~~~q~r~~~DpED~~D~~YL~eT 71 (74)
..+.+|+| ..++|-+||.|+++++.+.. +..+++++||+| ++|++.+
T Consensus 285 ~~i~lg~E~Rf~~pE~LF~P~~~g~~~~~----~~~~~~~~~~~~-~~y~~~~ 332 (498)
T 3qb0_A 285 EEIVFDNETRYGFAEELFLPKEDDIPANW----PRSNSGVVKTWR-NDYVPLK 332 (498)
T ss_dssp CEEEECHHHHHHHHHTTTSCCGGGSCTTS----CCCSSSCCCCCS-CCCCCCC
T ss_pred CEEEECchHhhhCchhhCCHhHcCCcccc----cccccccccccc-ccccccc
Confidence 46789999 99999999999999986542 125589999999 8898664
No 4
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=64.06 E-value=1.5 Score=29.05 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=23.1
Q ss_pred EEEccchhhcccccccc-----------cccccccCCceeeeccCCCCCCCCCC
Q psy8839 21 DILVADECLIAPLGIFH-----------PELLGLTGTKIVVTQSRAVSDPEDPH 63 (74)
Q Consensus 21 ~~kVgDE~m~APL~LFy-----------P~lf~I~~~~~~~~q~r~~~DpED~~ 63 (74)
.+|+||.+ +|| |.+-||..-....-+...+-||++|+
T Consensus 37 ~Mk~GD~~------~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D~t~~dp~~~y 84 (147)
T 2p5d_A 37 KVKVGDKL------IIYEIQRSGKDYKPPYIRGVYEVVSEVYKDSSKIFKPTPR 84 (147)
T ss_dssp TCCTTCEE------EEEECCBCSTTCBCCEEEEEEEECSCCEECCCCCSCCBTT
T ss_pred hCCCCCEE------EEEEecccCCCCCCCEEEEEEEEecccccCCcccCcCccC
Confidence 68999987 788 34444433333345566677776665
No 5
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=60.82 E-value=1.9 Score=30.75 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=26.1
Q ss_pred EEEccchhhcccccccc------cccccccCCceeeeccCCCCCCCCCC
Q psy8839 21 DILVADECLIAPLGIFH------PELLGLTGTKIVVTQSRAVSDPEDPH 63 (74)
Q Consensus 21 ~~kVgDE~m~APL~LFy------P~lf~I~~~~~~~~q~r~~~DpED~~ 63 (74)
+.|+||.| +|| |.+.||..--...-+...+.||+.||
T Consensus 51 ~Mk~GD~~------fFYHSnck~pgIvGi~eVv~e~ypD~T~fDp~s~Y 93 (176)
T 3eop_A 51 AMKLGEEA------FFYHSNCKEPGIAGLMKIVKEAYPDHTQFEKNNPH 93 (176)
T ss_dssp HCCTTCEE------EEEECCSSSCEEEEEEEEEEEEEECGGGTCTTSTT
T ss_pred hcCCCCEE------EEEecCCCCCeEEEEEEEeeccccCCcccCCCCCC
Confidence 58999987 676 45666655555566777788888776
No 6
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=56.43 E-value=2.2 Score=29.80 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=24.9
Q ss_pred EEEccchhhcccccccc------cccccccCCceeeeccCCCCCCCCCC
Q psy8839 21 DILVADECLIAPLGIFH------PELLGLTGTKIVVTQSRAVSDPEDPH 63 (74)
Q Consensus 21 ~~kVgDE~m~APL~LFy------P~lf~I~~~~~~~~q~r~~~DpED~~ 63 (74)
.+|+||.| +|| |.+-||..--....+...+.||++||
T Consensus 40 ~Mk~GD~~------ffYHS~c~~pgIvGi~eVv~e~ypD~t~fdp~s~Y 82 (157)
T 2eve_A 40 TMAEGDEF------FFYHSSCPEPGIAGIGKIVKTAYPDPTALDPDSHY 82 (157)
T ss_dssp HCCTTCEE------EEEECSSSSCEEEEEEEEEEEEEECGGGGCTTSTT
T ss_pred hcCCCCEE------EEEecCCCCCEEEEEEEEeEccCCCcccccccCcC
Confidence 58999987 666 45555555444555666777777775
No 7
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=56.01 E-value=3 Score=31.31 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=21.1
Q ss_pred eeeEEEccchhhccccccccccccccc
Q psy8839 18 LGFDILVADECLIAPLGIFHPELLGLT 44 (74)
Q Consensus 18 ~kY~~kVgDE~m~APL~LFyP~lf~I~ 44 (74)
..+.+.+|.|..++|=+||.|+++++.
T Consensus 276 ~~~~i~ig~erf~~pE~LF~P~~~g~~ 302 (427)
T 3dwl_A 276 HSTTIDVGFERFLAPEIFFNPEIASSD 302 (427)
T ss_dssp ----CBCCTHHHHSGGGGTCGGGTCSS
T ss_pred CeeEEEEChHhhhChhhccCchhcCCc
Confidence 457889999999999999999988764
No 8
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=55.60 E-value=3.2 Score=26.61 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=6.8
Q ss_pred EEccchh--hccccccccc
Q psy8839 22 ILVADEC--LIAPLGIFHP 38 (74)
Q Consensus 22 ~kVgDE~--m~APL~LFyP 38 (74)
+|+||++ +.+|+|-|++
T Consensus 1 L~~Gd~vl~v~gP~G~~f~ 19 (158)
T 3lrx_A 1 MKEGDSLLNVAGPLGTPVP 19 (158)
T ss_dssp -----------CCCCCCBC
T ss_pred CcCCCEeeEEECCCCCCCc
Confidence 5899995 8899998775
No 9
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=50.26 E-value=3.2 Score=29.32 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=23.9
Q ss_pred EEEccchhhcccccccc------cccccccCCceeeeccCCCCCCCCCC
Q psy8839 21 DILVADECLIAPLGIFH------PELLGLTGTKIVVTQSRAVSDPEDPH 63 (74)
Q Consensus 21 ~~kVgDE~m~APL~LFy------P~lf~I~~~~~~~~q~r~~~DpED~~ 63 (74)
.+|+||.| ||| |.+-||..--...-+...+.||++||
T Consensus 58 ~Mk~GD~v------fFYHS~c~~pgIvGi~eVv~e~ypD~t~fdp~s~Y 100 (172)
T 2ar1_A 58 AMSVGDKV------LFYHSNTKEPGVAGLAEVVRLAYDDFTALDKTSEY 100 (172)
T ss_dssp HCCTTCEE------EEEECSSSSCEEEEEEEEEEEEEECGGGGCTTSTT
T ss_pred hcCCCCEE------EEEecCCCCCEEEEEEEEeeeccCCcccccccCcc
Confidence 48999988 666 45555554444444566677777765
No 10
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=42.00 E-value=9.5 Score=27.31 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=22.1
Q ss_pred eeeEEEccchhhcccccccccccccc
Q psy8839 18 LGFDILVADECLIAPLGIFHPELLGL 43 (74)
Q Consensus 18 ~kY~~kVgDE~m~APL~LFyP~lf~I 43 (74)
..+.+.++.|-..+|-.||.|.+++.
T Consensus 265 ~~~~i~l~~erf~~~E~lF~P~~~~~ 290 (418)
T 1k8k_A 265 KEFSIDVGYERFLGPEIFFHPEFANP 290 (418)
T ss_dssp CEEEEEECTHHHHHHHTTTCGGGTCT
T ss_pred cccEEEeChHHhhCcHhhCCCccCCC
Confidence 45688999999999999999998764
No 11
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=33.74 E-value=18 Score=26.03 Aligned_cols=25 Identities=36% Similarity=0.600 Sum_probs=21.5
Q ss_pred EEEccchhhcccccccccccccccC
Q psy8839 21 DILVADECLIAPLGIFHPELLGLTG 45 (74)
Q Consensus 21 ~~kVgDE~m~APL~LFyP~lf~I~~ 45 (74)
.+.++.|...+|-+||.|.++++..
T Consensus 251 ~i~i~~erf~~~E~Lf~p~~~~~~~ 275 (394)
T 1k8k_B 251 IIKVGGERFEAPEALFQPHLINVEG 275 (394)
T ss_dssp EEEECTHHHHTGGGGTCGGGGTCCS
T ss_pred EEEECchhhcChHhhCCchhccCCC
Confidence 5889999999999999999887643
No 12
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=24.57 E-value=19 Score=23.65 Aligned_cols=8 Identities=13% Similarity=0.160 Sum_probs=6.9
Q ss_pred EEEccchh
Q psy8839 21 DILVADEC 28 (74)
Q Consensus 21 ~~kVgDE~ 28 (74)
.+|+||.+
T Consensus 34 ~mk~GD~~ 41 (145)
T 2hd9_A 34 RVKPGDKL 41 (145)
T ss_dssp TCCTTCEE
T ss_pred hCCCCCEE
Confidence 68999988
Done!