Query psy8839
Match_columns 74
No_of_seqs 51 out of 53
Neff 2.8
Searched_HMMs 13730
Date Fri Aug 16 20:28:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8839.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8839hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gvha2 b.43.4.2 (A:147-253) F 51.7 0.86 6.3E-05 25.9 -1.0 17 21-37 90-107 (107)
2 d1k8ka2 c.55.1.1 (A:161-418) A 50.7 2.8 0.0002 27.0 1.3 29 16-44 103-131 (258)
3 d1k8kb1 c.55.1.1 (B:154-343) A 50.5 3.9 0.00028 25.2 2.0 29 19-47 96-124 (190)
4 d2fxua2 c.55.1.1 (A:147-371) A 50.4 2.4 0.00017 26.7 0.9 28 19-46 99-126 (225)
5 d1a8pa1 b.43.4.2 (A:2-100) Fer 41.4 2.2 0.00016 24.4 -0.3 17 20-36 80-98 (99)
6 d1krha1 b.43.4.2 (A:106-205) B 40.5 1.6 0.00012 24.3 -1.0 17 21-37 83-100 (100)
7 d1umka1 b.43.4.2 (A:30-153) cy 36.6 2.5 0.00018 24.2 -0.6 17 21-37 103-120 (124)
8 d1cqxa2 b.43.4.2 (A:151-261) F 30.5 4.5 0.00033 22.8 -0.2 17 21-37 93-110 (111)
9 d1s0ua1 b.43.3.1 (A:230-347) I 29.4 5.3 0.00039 24.1 -0.0 19 16-34 35-53 (118)
10 d1zunb1 b.43.3.1 (B:238-329) S 28.0 6.8 0.0005 22.6 0.3 25 11-35 22-46 (92)
11 d2qn6a1 b.43.3.1 (A:207-320) I 27.8 6 0.00044 23.8 0.0 23 13-35 32-54 (114)
12 d1efca1 b.43.3.1 (A:205-296) E 26.7 8.9 0.00065 22.0 0.7 20 17-36 27-46 (92)
13 d2cnda1 b.43.4.2 (A:11-124) Ni 24.4 5.3 0.00039 22.5 -0.7 17 21-37 93-110 (114)
14 d1kk1a1 b.43.3.1 (A:201-321) I 23.6 8 0.00058 23.4 0.0 22 15-36 36-57 (121)
No 1
>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]}
Probab=51.66 E-value=0.86 Score=25.87 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=13.8
Q ss_pred EEEccchhh-cccccccc
Q psy8839 21 DILVADECL-IAPLGIFH 37 (74)
Q Consensus 21 ~~kVgDE~m-~APL~LFy 37 (74)
++|+||++. .+|.|-||
T Consensus 90 ~l~~Gd~v~v~gP~G~Ff 107 (107)
T d1gvha2 90 HANVGDVVKLVAPAGDFF 107 (107)
T ss_dssp TCCTTCEEEEEEEECSCC
T ss_pred cCCCCCEEEEeCccccCC
Confidence 488999986 57899886
No 2
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]}
Probab=50.69 E-value=2.8 Score=26.97 Aligned_cols=29 Identities=31% Similarity=0.378 Sum_probs=24.7
Q ss_pred eeeeeEEEccchhhccccccccccccccc
Q psy8839 16 YLLGFDILVADECLIAPLGIFHPELLGLT 44 (74)
Q Consensus 16 ~~~kY~~kVgDE~m~APL~LFyP~lf~I~ 44 (74)
....+.+.+|.|..++|=.||.|++++..
T Consensus 103 ~~~~~~i~~~~er~~~~E~lF~p~~~~~~ 131 (258)
T d1k8ka2 103 SKKEFSIDVGYERFLGPEIFFHPEFANPD 131 (258)
T ss_dssp TCCEEEEEECTHHHHHHHTTTCGGGTCTT
T ss_pred CCCCeEEecCccceeccHHHhhhhhhccc
Confidence 34578899999999999999999987643
No 3
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]}
Probab=50.52 E-value=3.9 Score=25.18 Aligned_cols=29 Identities=34% Similarity=0.544 Sum_probs=24.1
Q ss_pred eeEEEccchhhcccccccccccccccCCc
Q psy8839 19 GFDILVADECLIAPLGIFHPELLGLTGTK 47 (74)
Q Consensus 19 kY~~kVgDE~m~APL~LFyP~lf~I~~~~ 47 (74)
.+.+.+|+|...+|-+||.|..++.....
T Consensus 96 g~~i~i~~er~~~~E~lF~p~~~~~~~~~ 124 (190)
T d1k8kb1 96 GRIIKVGGERFEAPEALFQPHLINVEGVG 124 (190)
T ss_dssp SCEEEECTHHHHTGGGGTCGGGGTCCSCC
T ss_pred CcEEEEChhhccccccccChhhcCccccc
Confidence 45688999999999999999888765443
No 4
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
Probab=50.40 E-value=2.4 Score=26.67 Aligned_cols=28 Identities=25% Similarity=0.580 Sum_probs=23.3
Q ss_pred eeEEEccchhhcccccccccccccccCC
Q psy8839 19 GFDILVADECLIAPLGIFHPELLGLTGT 46 (74)
Q Consensus 19 kY~~kVgDE~m~APL~LFyP~lf~I~~~ 46 (74)
.+.+.+|+|...+|-.||.|.++++...
T Consensus 99 g~~i~i~~er~~~~E~lF~p~~~~~~~~ 126 (225)
T d2fxua2 99 GQVITIGNERFRCPETLFQPSFIGMESA 126 (225)
T ss_dssp SCEEEESTHHHHHHHTTTCGGGGTCCSC
T ss_pred CCEEEEchHhccccHhhcCccccCCccC
Confidence 3678899999999999999998876543
No 5
>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]}
Probab=41.43 E-value=2.2 Score=24.35 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=13.8
Q ss_pred eEEEccchhhc--cccccc
Q psy8839 20 FDILVADECLI--APLGIF 36 (74)
Q Consensus 20 Y~~kVgDE~m~--APL~LF 36 (74)
.++|+||++.+ .|+|-|
T Consensus 80 ~~l~~Gd~v~v~~gP~G~l 98 (99)
T d1a8pa1 80 QHLKEGDELMVSRKPTGTL 98 (99)
T ss_dssp TTCCTTCEEEEESCCBCSC
T ss_pred HhCCCCCEEEECCCCceeE
Confidence 37899999987 399866
No 6
>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=40.48 E-value=1.6 Score=24.33 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=13.6
Q ss_pred EEEccchhh-cccccccc
Q psy8839 21 DILVADECL-IAPLGIFH 37 (74)
Q Consensus 21 ~~kVgDE~m-~APL~LFy 37 (74)
++|+||++- ..|+|-||
T Consensus 83 ~l~~Gd~v~v~gP~G~Ff 100 (100)
T d1krha1 83 QAKAGDKMSFTGPFGSFY 100 (100)
T ss_dssp TCCTTCEEEEEEEECSCS
T ss_pred cCCCCCEEEEeccccccC
Confidence 478999975 57899886
No 7
>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.62 E-value=2.5 Score=24.21 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=13.5
Q ss_pred EEEccchhh-cccccccc
Q psy8839 21 DILVADECL-IAPLGIFH 37 (74)
Q Consensus 21 ~~kVgDE~m-~APL~LFy 37 (74)
++++||++- ..|+|-|.
T Consensus 103 ~l~~GD~v~v~gP~G~F~ 120 (124)
T d1umka1 103 SMQIGDTIEFRGPSGLLV 120 (124)
T ss_dssp HCCTTCEEEEEEEECSEE
T ss_pred cCCCCCEEEEECCeeeeE
Confidence 688999984 68888874
No 8
>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]}
Probab=30.48 E-value=4.5 Score=22.77 Aligned_cols=17 Identities=41% Similarity=0.700 Sum_probs=13.8
Q ss_pred EEEccchhh-cccccccc
Q psy8839 21 DILVADECL-IAPLGIFH 37 (74)
Q Consensus 21 ~~kVgDE~m-~APL~LFy 37 (74)
++|+||++. ..|+|-|+
T Consensus 93 ~l~~Gd~v~v~gP~G~F~ 110 (111)
T d1cqxa2 93 HVNVGDQVKLAAPYGSFH 110 (111)
T ss_dssp HCCTTCEEEECCCBCSCS
T ss_pred cCCCCCEEEEEccCeEeE
Confidence 589999986 57898885
No 9
>d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit, domain II {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=29.40 E-value=5.3 Score=24.15 Aligned_cols=19 Identities=26% Similarity=0.065 Sum_probs=14.8
Q ss_pred eeeeeEEEccchhhccccc
Q psy8839 16 YLLGFDILVADECLIAPLG 34 (74)
Q Consensus 16 ~~~kY~~kVgDE~m~APL~ 34 (74)
....=.+++|||+.+.|-+
T Consensus 35 tv~sG~i~~GD~v~i~P~~ 53 (118)
T d1s0ua1 35 AIIQGVFKVGDEIEIRPGI 53 (118)
T ss_dssp EEEESCEETTCEEEEEEEE
T ss_pred eecccEEeeCCEEEECCCC
Confidence 3344569999999999976
No 10
>d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=28.03 E-value=6.8 Score=22.56 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=18.5
Q ss_pred eeccceeeeeEEEccchhhcccccc
Q psy8839 11 TFFTVYLLGFDILVADECLIAPLGI 35 (74)
Q Consensus 11 ~~f~~~~~kY~~kVgDE~m~APL~L 35 (74)
+-|.-..+.=.+++|||+.+.|-+.
T Consensus 22 r~~~G~v~sG~v~~Gd~v~i~Psg~ 46 (92)
T d1zunb1 22 RGFAGTLASGIVHKGDEIVVLPSGK 46 (92)
T ss_dssp CEEEEECCBSCEETTCEEEETTTCC
T ss_pred cEEEEEEcccEEecCCEEEECCCCc
Confidence 3445555666799999999998774
No 11
>d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit, domain II {Sulfolobus solfataricus [TaxId: 2287]}
Probab=27.79 E-value=6 Score=23.77 Aligned_cols=23 Identities=13% Similarity=-0.117 Sum_probs=17.5
Q ss_pred ccceeeeeEEEccchhhcccccc
Q psy8839 13 FTVYLLGFDILVADECLIAPLGI 35 (74)
Q Consensus 13 f~~~~~kY~~kVgDE~m~APL~L 35 (74)
++-....=.+|+|||+.+.|-+.
T Consensus 32 vtGtv~~G~ikvGD~i~i~P~~~ 54 (114)
T d2qn6a1 32 IGGSIIQGLFKVDQEIKVLPGLR 54 (114)
T ss_dssp EEEEEEESCEETTCEEEEEEEEE
T ss_pred EEEEEccccEEeCCEEEEcCCCc
Confidence 34455566899999999999764
No 12
>d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2 {Escherichia coli [TaxId: 562]}
Probab=26.74 E-value=8.9 Score=22.02 Aligned_cols=20 Identities=20% Similarity=-0.037 Sum_probs=15.0
Q ss_pred eeeeEEEccchhhccccccc
Q psy8839 17 LLGFDILVADECLIAPLGIF 36 (74)
Q Consensus 17 ~~kY~~kVgDE~m~APL~LF 36 (74)
.+.=++++||++.+.|++-.
T Consensus 27 v~~G~i~~Gd~v~i~p~~~~ 46 (92)
T d1efca1 27 VERGIIKVGEEVEIVGIKET 46 (92)
T ss_dssp CCBSEEETTCEEEEESSSSC
T ss_pred eccCeEcCCCEEEEEcCCCC
Confidence 34457999999988887544
No 13
>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]}
Probab=24.36 E-value=5.3 Score=22.47 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=13.5
Q ss_pred EEEccchhhc-ccccccc
Q psy8839 21 DILVADECLI-APLGIFH 37 (74)
Q Consensus 21 ~~kVgDE~m~-APL~LFy 37 (74)
++++||++-+ .|+|-|.
T Consensus 93 ~l~~Gd~v~i~gP~G~F~ 110 (114)
T d2cnda1 93 SLPVGSYIDVKGPLGHVE 110 (114)
T ss_dssp HCCTTCEEEEEEEECSEE
T ss_pred hCCCCCEEEEECCceeeE
Confidence 5889999864 8988774
No 14
>d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit, domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=23.58 E-value=8 Score=23.39 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=16.4
Q ss_pred ceeeeeEEEccchhhccccccc
Q psy8839 15 VYLLGFDILVADECLIAPLGIF 36 (74)
Q Consensus 15 ~~~~kY~~kVgDE~m~APL~LF 36 (74)
-..+.=.+++|||+.+.|-+..
T Consensus 36 Gtv~sG~ik~GD~v~i~P~~~~ 57 (121)
T d1kk1a1 36 GSIVQGKLKVGDEIEIRPGVPY 57 (121)
T ss_dssp EEEEESCEETTCEEEEEEEEEE
T ss_pred eeecCCEEecCCEEEECCCCcc
Confidence 3445558999999998887653
Done!