RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8839
         (74 letters)



>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional.
          Length = 380

 Score = 28.4 bits (63), Expect = 0.23
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 2   KERSSREEYTFFTVYLL--GFDILVADECLIAPLGIFHPELLGL 43
           KE++S E+      Y+L  G  IL+  E   AP  +F+P +LGL
Sbjct: 231 KEKNSSEKALTTLPYILPDGSQILIGSERYRAPEVLFNPSILGL 274


>gnl|CDD|215088 PLN00171, PLN00171, photosystem  light-harvesting complex
           -chlorophyll a/b binding protein Lhcb7; Provisional.
          Length = 324

 Score = 27.5 bits (61), Expect = 0.49
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 20  FDILVADECLIAPLGIFHPELLGLTGT 46
           F+IL A   ++A LG+  PE+L L G 
Sbjct: 151 FEILHARWAMLAALGVVIPEVLDLFGA 177


>gnl|CDD|220556 pfam10082, DUF2320, Uncharacterized protein conserved in bacteria
           (DUF2320).  This domain, found in various hypothetical
           bacterial proteins, has no known function.
          Length = 380

 Score = 25.3 bits (56), Expect = 2.9
 Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)

Query: 43  LTGTKIVVTQSRAVSDPEDPHDGDYLRETSVS 74
              T +     RAV +      G  + ET+ S
Sbjct: 269 TRLTTVTFVARRAVDESTLA-GGSGVLETTYS 299


>gnl|CDD|221065 pfam11299, DUF3100, Protein of unknown function (DUF3100).  Some
           members in this family of proteins are annotated as
           membrane proteins however this cannot be confirmed.
           Currently no function is known.
          Length = 239

 Score = 24.8 bits (55), Expect = 3.8
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 10/39 (25%)

Query: 12  FFTVYLLG-------FDILVADECLIAPLGIFHPELLGL 43
              VY++G       F +L      +A LG FHP  L +
Sbjct: 142 VLAVYIIGTVFGTIFFSLLA---SFLASLGPFHPYALAM 177


>gnl|CDD|235382 PRK05270, PRK05270, galactose-1-phosphate uridylyltransferase;
           Provisional.
          Length = 493

 Score = 24.1 bits (53), Expect = 9.4
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 32  PLGIFHP 38
           P GIFHP
Sbjct: 380 PDGIFHP 386


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.139    0.404 

Gapped
Lambda     K      H
   0.267   0.0796    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,923,768
Number of extensions: 309735
Number of successful extensions: 254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 7
Length of query: 74
Length of database: 10,937,602
Length adjustment: 44
Effective length of query: 30
Effective length of database: 8,986,026
Effective search space: 269580780
Effective search space used: 269580780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)