RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8839
(74 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.079
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 24/81 (29%)
Query: 8 EEY-----TFFTVY--LLGFDILVADECLIAPL-------GIFHPELLGLTGTKIVVTQS 53
++Y + Y L+G I + E L + L + G I+
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETL-SELIRTTLDAEKVFTQ-----GLNIL---- 216
Query: 54 RAVSDPEDPHDGDYLRETSVS 74
+ +P + D DYL +S
Sbjct: 217 EWLENPSNTPDKDYLLSIPIS 237
Score = 27.3 bits (60), Expect = 0.39
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 12/53 (22%)
Query: 31 APLGIFHPELLGLTGTKIV--VTQSRAVSDPED---P----HDGDYLRETSVS 74
+P FH LL I + ++ + +D P DG LR S S
Sbjct: 425 SP---FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding
protein, mitochondrial assembly factor, redox, nickel,
disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP:
c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A
2hrf_A 2hrn_A 1wp0_A
Length = 164
Score = 28.0 bits (63), Expect = 0.19
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 27 ECLIAPLGIFHPELLGLTGT----KIVVTQSRAVSDP-EDPHDGDYL 68
E + + F P+L+GLTGT V R P D DY+
Sbjct: 77 EAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYI 123
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold,
electron transfer protein, metal binding protein,
electron transport; NMR {Thermus thermophilus}
Length = 172
Score = 28.1 bits (63), Expect = 0.19
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 36 FHPELLGLTGT----KIVVTQSRAV-SDPEDPHDGDYL 68
FHP LGL+G+ + + G+YL
Sbjct: 97 FHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYL 134
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin
fold, metal transport, structural genomics,
spine2-complexes; NMR {Homo sapiens}
Length = 171
Score = 28.0 bits (63), Expect = 0.20
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 36 FHPELLGLTGT----KIVVTQSRAV-SDPEDPHDGDYL 68
FHP LLGLTG+ R + D DY+
Sbjct: 89 FHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYI 126
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding
protein; 1.80A {Saccharomyces cerevisiae} SCOP:
c.47.1.10 PDB: 2b7j_A
Length = 200
Score = 27.4 bits (61), Expect = 0.37
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 36 FHPELLGLTGT----KIVVTQSRAVSD--PEDPHDGDYL 68
FHP +LGLTGT K + R P DYL
Sbjct: 103 FHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYL 141
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
{Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
1pxt_A
Length = 393
Score = 26.3 bits (59), Expect = 0.90
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 5/22 (22%)
Query: 30 IAPLGIFHPELLGLTGTKIVVT 51
IA LG HP LG TG + V T
Sbjct: 347 IA-LG--HP--LGCTGARQVAT 363
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
lyase, oxidoreductase/transferase complex, lyase; HET:
ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Length = 390
Score = 25.9 bits (58), Expect = 1.2
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 5/22 (22%)
Query: 30 IAPLGIFHPELLGLTGTKIVVT 51
IA LG HP G +G +I T
Sbjct: 342 IA-LG--HP--FGCSGARISGT 358
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
IDP01071, acyltransferase, cytoplasm, fatty acid
metabolism; 1.70A {Salmonella typhimurium}
Length = 387
Score = 25.5 bits (57), Expect = 1.4
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 5/22 (22%)
Query: 30 IAPLGIFHPELLGLTGTKIVVT 51
IA LG HP LG +G +I T
Sbjct: 339 IA-LG--HP--LGCSGARISTT 355
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 25.6 bits (57), Expect = 1.7
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 5/22 (22%)
Query: 30 IAPLGIFHPELLGLTGTKIVVT 51
+A LG HP LG TG + V+T
Sbjct: 367 VA-LG--HP--LGCTGARQVIT 383
>2qdr_A Uncharacterized protein; double-stranded beta-helix fold,
structural genomics, joint for structural genomics,
JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}
Length = 303
Score = 25.6 bits (55), Expect = 1.9
Identities = 11/51 (21%), Positives = 15/51 (29%)
Query: 8 EEYTFFTVYLLGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSD 58
E Y +G +V D P P + G V R +S
Sbjct: 241 EGYCLTGYCDVGDYRIVKDHYWYCPSFSTLPRHITDDGGLFFVRVDRDLSK 291
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 25.2 bits (56), Expect = 2.1
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 5/22 (22%)
Query: 30 IAPLGIFHPELLGLTGTKIVVT 51
+A +G HP LG TG + V T
Sbjct: 369 MA-IG--HP--LGATGARCVAT 385
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding,
cytoskeleton, nucleot binding, WD repeat; HET: ATP;
3.78A {Schizosaccharomyces pombe}
Length = 427
Score = 24.8 bits (54), Expect = 3.6
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 3 ERSSREEYTFFTVYLL--GFDILVADECLIAPLGIFHPELLGL 43
+R + + + I V E +AP F+PE+
Sbjct: 259 DREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASS 301
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein;
2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B*
2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B*
3dxm_B* 3rse_B 2p9k_B*
Length = 394
Score = 23.9 bits (52), Expect = 6.1
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 3 ERSSREEYTFFTVYLL--GFDILVADECLIAPLGIFHPELLGLTGTKI 48
++ + E Y L G I V E AP +F P L+ + G +
Sbjct: 231 QKLALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGV 278
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to
bistramide A, structural protein; HET: HIC ATP BID;
1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1
PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1*
1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0*
1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A*
...
Length = 375
Score = 23.5 bits (51), Expect = 8.5
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 19 GFDILVADECLIAPLGIFHPELLGL 43
G I + +E P +F P +G+
Sbjct: 245 GQVITIGNERFRCPETLFQPSFIGM 269
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.404
Gapped
Lambda K H
0.267 0.0845 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,214,822
Number of extensions: 60814
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 15
Length of query: 74
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 30
Effective length of database: 5,473,269
Effective search space: 164198070
Effective search space used: 164198070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.2 bits)