RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8839
         (74 letters)



>d2ahua1 c.124.1.3 (A:283-529) Putative enzyme YdiF C-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 247

 Score = 25.4 bits (55), Expect = 0.58
 Identities = 4/26 (15%), Positives = 10/26 (38%)

Query: 19  GFDILVADECLIAPLGIFHPELLGLT 44
            F  +++ E  +    +F    +G  
Sbjct: 218 DFTPVISPELKLMDERLFIDAAMGFV 243


>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of
           imidazoleglycerolphosphate synthase HisF {Baker's yeast
           (Saccharomyces cerevisiae), His7 [TaxId: 4932]}
          Length = 232

 Score = 24.5 bits (52), Expect = 1.6
 Identities = 6/13 (46%), Positives = 7/13 (53%)

Query: 36  FHPELLGLTGTKI 48
           FHPE  G  G  +
Sbjct: 195 FHPEKSGKAGLNV 207


>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal
          domain {Leishmania mexicana [TaxId: 5665]}
          Length = 258

 Score = 22.6 bits (48), Expect = 6.2
 Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 1/28 (3%)

Query: 33 LGIFHPELLGLTGTKIVVTQSRAVSDPE 60
          L IF P +      +I+ T   +    E
Sbjct: 9  LSIFDP-VANYRAARIICTIGPSTQSVE 35


>d2nyga1 c.140.1.2 (A:2-271) Uncharacterized protein YokD
          {Bacillus subtilis [TaxId: 1423]}
          Length = 270

 Score = 22.2 bits (47), Expect = 9.1
 Identities = 8/32 (25%), Positives = 18/32 (56%)

Query: 39 ELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRE 70
          +++   GT ++ +QS  +SDP++  +     E
Sbjct: 57 DVVTEEGTIVMPSQSVELSDPKEWGNPPVPEE 88


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.139    0.404 

Gapped
Lambda     K      H
   0.267   0.0577    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 290,919
Number of extensions: 10656
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 4
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)