BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8840
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 414 bits (1063), Expect = e-116, Method: Compositional matrix adjust.
Identities = 195/257 (75%), Positives = 230/257 (89%), Gaps = 1/257 (0%)
Query: 4 YMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKR 63
Y + G + E +GVIPNSFD IF+HI+R++N+QYL+RASYLEIYQEEIRDLL KDQ+KR
Sbjct: 117 YTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKR 176
Query: 64 YELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITI 123
EL+E PD+GVYVK+L S++ K+VKEIE VM GN NR++GATNMNEHSSRSHAIF+ITI
Sbjct: 177 LELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITI 236
Query: 124 EMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISAL 183
E S+V D + +RVGKLNLVDLAGSERQ+KTGA G+RLKEA+KINLSLSALGNVISAL
Sbjct: 237 ECSEVGLDGE-NHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISAL 295
Query: 184 VDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKN 243
VDGK+ H+PYRDSKLTRLLQDSLGGN+KT+M+AN+GPASYN EE+LTTLRYANRAKNIKN
Sbjct: 296 VDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKN 355
Query: 244 QPRVNEDPKEALLREYQ 260
+PRVNEDPK+ALLRE+Q
Sbjct: 356 KPRVNEDPKDALLREFQ 372
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 354 bits (909), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 174/280 (62%), Positives = 217/280 (77%), Gaps = 25/280 (8%)
Query: 4 YMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKR 63
Y + G+ E +GVIPN+F+ IF+HI+R++N+QYL+RASYLEIYQEEIRDLL K+ KR
Sbjct: 117 YTMQGTWVEPELRGVIPNAFEHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKR 176
Query: 64 YELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITI 123
EL+ENP++GVY+K+L S++ KNVKEIE VM GN R +G+T+MNE SSRSHAIFIIT+
Sbjct: 177 LELKENPETGVYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITV 236
Query: 124 EMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTG---ATG-------------------- 160
E S+ R +RVGKLNLVDLAGSERQ+K G A G
Sbjct: 237 ECSE-RGSDGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAG 295
Query: 161 -KRLKEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIG 219
+R KEASKINLSLSALGNVI+AL ++ H+PYRDSKLTRLLQDSLGGN+KT+M+A +G
Sbjct: 296 GERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLG 355
Query: 220 PASYNYEESLTTLRYANRAKNIKNQPRVNEDPKEALLREY 259
PAS++Y+ESL+TLR+ANRAKNIKN+PRVNEDPK+ LLRE+
Sbjct: 356 PASHSYDESLSTLRFANRAKNIKNKPRVNEDPKDTLLREF 395
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 278 bits (712), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 142/242 (58%), Positives = 179/242 (73%), Gaps = 6/242 (2%)
Query: 14 ESKGVIPNSFDQIFSHI-ARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDS 72
E G IPNSF +F I + + N+ +L+ SYLE+Y EEIRDL+ + + L+E+
Sbjct: 112 EEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNT--KLPLKEDKTR 169
Query: 73 GVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDS 132
G+YV L + E+ +M G NR + AT MN+ SSRSH+IF++ IE S+V E+
Sbjct: 170 GIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENK 229
Query: 133 SMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIHVP 192
+ +RVGKLNLVDLAGSERQSKTGATG+ L E +KINLSLSALG VIS LV+G H+P
Sbjct: 230 EV--IRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGAT-HIP 286
Query: 193 YRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNEDPK 252
YRDSKLTRLLQDSLGGNSKTLM ANI PAS NY+E+++TLRYA+RAK IKN+PR+NEDPK
Sbjct: 287 YRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPK 346
Query: 253 EA 254
+A
Sbjct: 347 DA 348
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 243 bits (621), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 132/257 (51%), Positives = 178/257 (69%), Gaps = 7/257 (2%)
Query: 4 YMIIG-SKESAESKGVIPNSFDQIFSHI-ARTENKQYLIRASYLEIYQEEIRDLLDKDQS 61
Y ++G S + + +GVIP +QIF+ I + N +Y +R SY+EIY E IRDLL Q+
Sbjct: 96 YTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLL-APQN 154
Query: 62 KRYELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFII 121
+ E + GVYVK L +V+E+ +VM+ G R + ATNMN+ SSRSH+IF+I
Sbjct: 155 DNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVI 214
Query: 122 TIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVIS 181
TI +V S+ S G+L LVDLAGSE+ KTGA+G+ L+EA KIN SLSALG VI+
Sbjct: 215 TITQKNVETGSAKS----GQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVIN 270
Query: 182 ALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNI 241
AL DGK+ HVPYRDSKLTR+LQ+SLGGNS+T +I N P+SYN E+L+TLR+ RAK+I
Sbjct: 271 ALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSI 330
Query: 242 KNQPRVNEDPKEALLRE 258
KN+ +VN + A L++
Sbjct: 331 KNKAKVNAELSPAELKQ 347
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 224 bits (570), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 124/244 (50%), Positives = 163/244 (66%), Gaps = 11/244 (4%)
Query: 4 YMIIGSKESAESKGVIPNSFDQIFSHIARTENKQ--YLIRASYLEIYQEEIRDLLDKDQS 61
Y ++G+ A+ G+IP +F + EN++ + + SY+EIY E++RDLLD S
Sbjct: 108 YTMMGT---ADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGS 164
Query: 62 KR-YELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFI 120
++ ++RE+ G YV L + K+IE +M GN +RT+ ATNMNE SSRSHA+F
Sbjct: 165 RQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFK 224
Query: 121 ITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVI 180
IT+ + S S +VGKL+LVDLAGSER +KTGA G RLKE S IN SL+ LG VI
Sbjct: 225 ITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVI 284
Query: 181 SALVD-----GKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYA 235
SAL D KN VPYRDS LT LL+DSLGGNSKT M+A + PA+ NY+E+L+TLRYA
Sbjct: 285 SALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYA 344
Query: 236 NRAK 239
+RAK
Sbjct: 345 DRAK 348
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 214 bits (544), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 117/238 (49%), Positives = 162/238 (68%), Gaps = 9/238 (3%)
Query: 17 GVIPNSFDQIFSHIARTEN-KQYLIRASYLEIYQEEIRDLLDK--DQSKRYELRENPDS- 72
G+IP + QIF + T+N ++ ++ S LEIY EE+ DLL+ D S+R ++ ++P +
Sbjct: 134 GIIPRTLHQIFEKL--TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 191
Query: 73 -GVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVRED 131
GV +K L+ N E+ Q+++ G RT AT MN +SSRSH++F +TI M + D
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 251
Query: 132 SSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIHV 191
V++GKLNLVDLAGSE ++GA KR +EA IN SL LG VI+ALV+ + HV
Sbjct: 252 GE-ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHV 309
Query: 192 PYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNE 249
PYR+SKLTR+LQDSLGG ++T +IA I PAS N EE+L+TL YA+RAKNI N+P VN+
Sbjct: 310 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 214 bits (544), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 117/238 (49%), Positives = 162/238 (68%), Gaps = 9/238 (3%)
Query: 17 GVIPNSFDQIFSHIARTEN-KQYLIRASYLEIYQEEIRDLLDK--DQSKRYELRENPDS- 72
G+IP + QIF + T+N ++ ++ S LEIY EE+ DLL+ D S+R ++ ++P +
Sbjct: 134 GIIPRTLHQIFEKL--TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 191
Query: 73 -GVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVRED 131
GV +K L+ N E+ Q+++ G RT AT MN +SSRSH++F +TI M + D
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 251
Query: 132 SSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIHV 191
V++GKLNLVDLAGSE ++GA KR +EA IN SL LG VI+ALV+ + HV
Sbjct: 252 GE-ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHV 309
Query: 192 PYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNE 249
PYR+SKLTR+LQDSLGG ++T +IA I PAS N EE+L+TL YA+RAKNI N+P VN+
Sbjct: 310 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 214 bits (544), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 117/238 (49%), Positives = 162/238 (68%), Gaps = 9/238 (3%)
Query: 17 GVIPNSFDQIFSHIARTEN-KQYLIRASYLEIYQEEIRDLLDK--DQSKRYELRENPDS- 72
G+IP + QIF + T+N ++ ++ S LEIY EE+ DLL+ D S+R ++ ++P +
Sbjct: 134 GIIPRTLHQIFEKL--TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 191
Query: 73 -GVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVRED 131
GV +K L+ N E+ Q+++ G RT AT MN +SSRSH++F +TI M + D
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 251
Query: 132 SSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIHV 191
V++GKLNLVDLAGSE ++GA KR +EA IN SL LG VI+ALV+ + HV
Sbjct: 252 GE-ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHV 309
Query: 192 PYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNE 249
PYR+SKLTR+LQDSLGG ++T +IA I PAS N EE+L+TL YA+RAKNI N+P VN+
Sbjct: 310 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 214 bits (544), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 117/238 (49%), Positives = 162/238 (68%), Gaps = 9/238 (3%)
Query: 17 GVIPNSFDQIFSHIARTEN-KQYLIRASYLEIYQEEIRDLLDK--DQSKRYELRENPDS- 72
G+IP + QIF + T+N ++ ++ S LEIY EE+ DLL+ D S+R ++ ++P +
Sbjct: 134 GIIPRTLHQIFEKL--TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 191
Query: 73 -GVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVRED 131
GV +K L+ N E+ Q+++ G RT AT MN +SSRSH++F +TI M + D
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 251
Query: 132 SSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIHV 191
V++GKLNLVDLAGSE ++GA KR +EA IN SL LG VI+ALV+ + HV
Sbjct: 252 GE-ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHV 309
Query: 192 PYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNE 249
PYR+SKLTR+LQDSLGG ++T +IA I PAS N EE+L+TL YA+RAKNI N+P VN+
Sbjct: 310 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 214 bits (544), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 117/238 (49%), Positives = 162/238 (68%), Gaps = 9/238 (3%)
Query: 17 GVIPNSFDQIFSHIARTEN-KQYLIRASYLEIYQEEIRDLLDK--DQSKRYELRENPDS- 72
G+IP + QIF + T+N ++ ++ S LEIY EE+ DLL+ D S+R ++ ++P +
Sbjct: 125 GIIPRTLHQIFEKL--TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 182
Query: 73 -GVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVRED 131
GV +K L+ N E+ Q+++ G RT AT MN +SSRSH++F +TI M + D
Sbjct: 183 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 242
Query: 132 SSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIHV 191
V++GKLNLVDLAGSE ++GA KR +EA IN SL LG VI+ALV+ + HV
Sbjct: 243 GE-ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHV 300
Query: 192 PYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNE 249
PYR+SKLTR+LQDSLGG ++T +IA I PAS N EE+L+TL YA+RAKNI N+P VN+
Sbjct: 301 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 214 bits (544), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 117/238 (49%), Positives = 162/238 (68%), Gaps = 9/238 (3%)
Query: 17 GVIPNSFDQIFSHIARTEN-KQYLIRASYLEIYQEEIRDLLDK--DQSKRYELRENPDS- 72
G+IP + QIF + T+N ++ ++ S LEIY EE+ DLL+ D S+R ++ ++P +
Sbjct: 136 GIIPRTLHQIFEKL--TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 193
Query: 73 -GVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVRED 131
GV +K L+ N E+ Q+++ G RT AT MN +SSRSH++F +TI M + D
Sbjct: 194 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 253
Query: 132 SSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIHV 191
V++GKLNLVDLAGSE ++GA KR +EA IN SL LG VI+ALV+ + HV
Sbjct: 254 GE-ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHV 311
Query: 192 PYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNE 249
PYR+SKLTR+LQDSLGG ++T +IA I PAS N EE+L+TL YA+RAKNI N+P VN+
Sbjct: 312 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 369
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 213 bits (543), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 117/249 (46%), Positives = 161/249 (64%), Gaps = 7/249 (2%)
Query: 16 KGVIPNSFDQIFSHIARTE-NKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDSGV 74
+G+IP + IF+HI E N ++ I+ SY EIY ++IRDLLD + + E+ +
Sbjct: 112 QGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKV-NLSVHEDKNRVP 170
Query: 75 YVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSM 134
YVK + +++ +V++ G NR I TNMNEHSSRSH++F+I ++ ++ +
Sbjct: 171 YVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKL 230
Query: 135 SQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIHVPYR 194
S GKL LVDLAGSE+ SKTGA G L EA IN SLSALGNVISAL DG H+PYR
Sbjct: 231 S----GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYR 286
Query: 195 DSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNED-PKE 253
DSKLTR+LQ+SLGGN++T ++ PAS+N E+ +TL + RAK +KN VNE+ E
Sbjct: 287 DSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAE 346
Query: 254 ALLREYQEE 262
R Y++E
Sbjct: 347 EWKRRYEKE 355
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 213 bits (543), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 117/238 (49%), Positives = 162/238 (68%), Gaps = 9/238 (3%)
Query: 17 GVIPNSFDQIFSHIARTEN-KQYLIRASYLEIYQEEIRDLLDK--DQSKRYELRENPDS- 72
G+IP + QIF + T+N ++ ++ S LEIY EE+ DLL+ D S+R ++ ++P +
Sbjct: 133 GIIPRTLHQIFEKL--TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 190
Query: 73 -GVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVRED 131
GV +K L+ N E+ Q+++ G RT AT MN +SSRSH++F +TI M + D
Sbjct: 191 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 250
Query: 132 SSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIHV 191
V++GKLNLVDLAGSE ++GA KR +EA IN SL LG VI+ALV+ + HV
Sbjct: 251 GE-ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHV 308
Query: 192 PYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNE 249
PYR+SKLTR+LQDSLGG ++T +IA I PAS N EE+L+TL YA+RAKNI N+P VN+
Sbjct: 309 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 366
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 213 bits (543), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 117/238 (49%), Positives = 162/238 (68%), Gaps = 9/238 (3%)
Query: 17 GVIPNSFDQIFSHIARTEN-KQYLIRASYLEIYQEEIRDLLDK--DQSKRYELRENPDS- 72
G+IP + QIF + T+N ++ ++ S LEIY EE+ DLL+ D S+R ++ ++P +
Sbjct: 134 GIIPRTLHQIFEKL--TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 191
Query: 73 -GVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVRED 131
GV +K L+ N E+ Q+++ G RT AT MN +SSRSH++F +TI M + D
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 251
Query: 132 SSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIHV 191
V++GKLNLVDLAGSE ++GA KR +EA IN SL LG VI+ALV+ + HV
Sbjct: 252 GE-ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHV 309
Query: 192 PYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNE 249
PYR+SKLTR+LQDSLGG ++T +IA I PAS N EE+L+TL YA+RAKNI N+P VN+
Sbjct: 310 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/234 (49%), Positives = 159/234 (67%), Gaps = 9/234 (3%)
Query: 17 GVIPNSFDQIFSHIARTEN-KQYLIRASYLEIYQEEIRDLLDK--DQSKRYELRENPDS- 72
G+IP + QIF + T+N ++ ++ S LEIY EE+ DLL+ D S+R ++ ++P +
Sbjct: 119 GIIPRTLHQIFEKL--TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 176
Query: 73 -GVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVRED 131
GV +K L+ N E+ Q+++ G RT AT MN +SSRSH++F +TI M + D
Sbjct: 177 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 236
Query: 132 SSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIHV 191
V++GKLNLVDLAGSE ++GA KR +EA IN SL LG VI+ALV+ + HV
Sbjct: 237 GE-ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHV 294
Query: 192 PYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQP 245
PYR+SKLTR+LQDSLGG ++T +IA I PAS N EE+L+TL YA+RAKNI N+P
Sbjct: 295 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKP 348
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 115/258 (44%), Positives = 162/258 (62%), Gaps = 14/258 (5%)
Query: 4 YMIIGSKESAESKGVIPNSFDQIFSHIART--ENKQYLIRASYLEIYQEEIRDLLDKDQS 61
Y ++G +E + +G+IP + +FS I T +N Y + SY+EIY E +RDLL+
Sbjct: 121 YTMMGKQEK-DQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNK 179
Query: 62 KRYELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFII 121
+RE+P G YV++L + +I+ +M +GN RT+ ATNMNE SSRSHA+F I
Sbjct: 180 GNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNI 239
Query: 122 TIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVIS 181
+++++ +V K++LVDLAGSER TGA G RLKE + IN SL+ LG VIS
Sbjct: 240 IFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVIS 299
Query: 182 ALVD-----------GKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLT 230
AL + K +PYRDS LT LL+++LGGNS+T M+A + PA NY+E+L+
Sbjct: 300 ALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLS 359
Query: 231 TLRYANRAKNIKNQPRVN 248
TLRYA+RAK I+N VN
Sbjct: 360 TLRYADRAKQIRNTVSVN 377
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 208 bits (529), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 115/258 (44%), Positives = 162/258 (62%), Gaps = 14/258 (5%)
Query: 4 YMIIGSKESAESKGVIPNSFDQIFSHIART--ENKQYLIRASYLEIYQEEIRDLLDKDQS 61
Y ++G +E + +G+IP + +FS I T +N Y + SY+EIY E +RDLL+
Sbjct: 105 YTMMGKQEK-DQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNK 163
Query: 62 KRYELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFII 121
+RE+P G YV++L + +I+ +M +GN RT+ ATNMNE SSRSHA+F I
Sbjct: 164 GNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNI 223
Query: 122 TIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVIS 181
+++++ +V K++LVDLAGSER TGA G RLKE + IN SL+ LG VIS
Sbjct: 224 IFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVIS 283
Query: 182 ALVD-----------GKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLT 230
AL + K +PYRDS LT LL+++LGGNS+T M+A + PA NY+E+L+
Sbjct: 284 ALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLS 343
Query: 231 TLRYANRAKNIKNQPRVN 248
TLRYA+RAK I+N VN
Sbjct: 344 TLRYADRAKQIRNTVSVN 361
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 208 bits (529), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 115/259 (44%), Positives = 162/259 (62%), Gaps = 14/259 (5%)
Query: 4 YMIIGSKESAESKGVIPNSFDQIFSHIART--ENKQYLIRASYLEIYQEEIRDLLDKDQS 61
Y ++G +E + +G+IP + +FS I T +N Y + SY+EIY E +RDLL+
Sbjct: 105 YTMMGKQEK-DQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNK 163
Query: 62 KRYELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFII 121
+RE+P G YV++L + +I+ +M +GN RT+ ATNMNE SSRSHA+F I
Sbjct: 164 GNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNI 223
Query: 122 TIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVIS 181
+++++ +V K++LVDLAGSER TGA G RLKE + IN SL+ LG VIS
Sbjct: 224 IFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVIS 283
Query: 182 ALVD-----------GKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLT 230
AL + K +PYRDS LT LL+++LGGNS+T M+A + PA NY+E+L+
Sbjct: 284 ALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLS 343
Query: 231 TLRYANRAKNIKNQPRVNE 249
TLRYA+RAK I+N VN
Sbjct: 344 TLRYADRAKQIRNTVSVNH 362
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 208 bits (529), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 115/259 (44%), Positives = 162/259 (62%), Gaps = 14/259 (5%)
Query: 4 YMIIGSKESAESKGVIPNSFDQIFSHIART--ENKQYLIRASYLEIYQEEIRDLLDKDQS 61
Y ++G +E + +G+IP + +FS I T +N Y + SY+EIY E +RDLL+
Sbjct: 105 YTMMGKQEK-DQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNK 163
Query: 62 KRYELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFII 121
+RE+P G YV++L + +I+ +M +GN RT+ ATNMNE SSRSHA+F I
Sbjct: 164 GNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNI 223
Query: 122 TIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVIS 181
+++++ +V K++LVDLAGSER TGA G RLKE + IN SL+ LG VIS
Sbjct: 224 IFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVIS 283
Query: 182 ALVD-----------GKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLT 230
AL + K +PYRDS LT LL+++LGGNS+T M+A + PA NY+E+L+
Sbjct: 284 ALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLS 343
Query: 231 TLRYANRAKNIKNQPRVNE 249
TLRYA+RAK I+N VN
Sbjct: 344 TLRYADRAKQIRNTVSVNH 362
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 156/243 (64%), Gaps = 9/243 (3%)
Query: 8 GSKESAESKGVIPNSFDQIFSHI-ARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYEL 66
G E G+IP IF++I + EN ++ I+ SY EIY ++IRDLLD ++ +
Sbjct: 97 GKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTN-LSV 155
Query: 67 RENPDSGVYVKNL-QSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEM 125
E+ + YVK + ++C + E+ + G NR + TNMNEHSSRSH+IF+I ++
Sbjct: 156 HEDKNRVPYVKGCTERFVC-SPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQ 214
Query: 126 SDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVD 185
+ + + +S GKL LVDLAGSE+ SKTGA G L EA IN SLSALGNVISAL +
Sbjct: 215 ENTQTEQKLS----GKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE 270
Query: 186 GKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQP 245
G + +VPYRDSK+TR+LQDSLGGN +T ++ P+SYN E+ +TL + RAK IKN
Sbjct: 271 G-STYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTV 329
Query: 246 RVN 248
VN
Sbjct: 330 CVN 332
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 155/243 (63%), Gaps = 9/243 (3%)
Query: 8 GSKESAESKGVIPNSFDQIFSHI-ARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYEL 66
G E G+IP IF++I + EN ++ I+ SY EIY ++IRDLLD ++ +
Sbjct: 97 GKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKT-NLSV 155
Query: 67 RENPDSGVYVKNL-QSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEM 125
E+ + YVK + ++C + E+ + G NR + TNMNEHSSRSH+IF+I ++
Sbjct: 156 HEDKNRVPYVKGCTERFVC-SPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQ 214
Query: 126 SDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVD 185
+ + + +S GKL LVDLAGSE+ SKTGA G L EA IN SLSALGNVISAL +
Sbjct: 215 ENTQTEQKLS----GKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE 270
Query: 186 GKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQP 245
G +VPYRDSK+TR+LQDSLGGN +T ++ P+SYN E+ +TL + RAK IKN
Sbjct: 271 GST-YVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTV 329
Query: 246 RVN 248
VN
Sbjct: 330 CVN 332
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 197 bits (500), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 151/236 (63%), Gaps = 9/236 (3%)
Query: 8 GSKESAESKGVIPNSFDQIFSHI-ARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYEL 66
G E G+IP IF++I + EN ++ I+ SY EIY ++IRDLLD ++ +
Sbjct: 97 GKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTN-LSV 155
Query: 67 RENPDSGVYVKNL-QSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEM 125
E+ + YVK + ++C + E+ + G NR + TNMNEHSSRSH+IF+I ++
Sbjct: 156 HEDKNRVPYVKGCTERFVC-SPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQ 214
Query: 126 SDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVD 185
+ + + +S GKL LVDLAGSE+ SKTGA G L EA IN SLSALGNVISAL +
Sbjct: 215 ENTQTEQKLS----GKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE 270
Query: 186 GKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNI 241
G +VPYRDSK+TR+LQDSLGGN +T ++ P+SYN E+ +TL + RAK I
Sbjct: 271 GST-YVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/277 (41%), Positives = 165/277 (59%), Gaps = 38/277 (13%)
Query: 4 YMIIGSKESAESKGVIPNSFDQIFSHIA----RTENKQYLIRASYLEIYQEEIRDLLDK- 58
Y ++G+ + G+IP + + +F IA T N Y ++ SY E+Y E +RDLL
Sbjct: 152 YTMMGTPDQ---PGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPV 208
Query: 59 --DQSKRY-ELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRS 115
++ Y ++RE+P G YVK+L + ++EI + M+ G+ +RT+ +T MN+ SSRS
Sbjct: 209 VPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRS 268
Query: 116 HAIFIITIEM--SDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSL 173
HA+F I ++ D+ D + R ++ LVDLAGSER T ATG+RL+E S IN SL
Sbjct: 269 HAVFTIMLKQIHHDLETDDTTE--RSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSL 326
Query: 174 SALGNVISALVDGK---------------------NIHVPYRDSKLTRLLQDSLGGNSKT 212
+ LG VI+AL D K N VPYRDS LT LL+DSLGGNSKT
Sbjct: 327 TTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKT 386
Query: 213 LMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNE 249
MIA I P +Y+E+L+TLRYA++AK I+ + VN+
Sbjct: 387 AMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQ 421
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/232 (44%), Positives = 153/232 (65%), Gaps = 9/232 (3%)
Query: 16 KGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKR-YELRENPDSGV 74
+G++P + + F I + L+ SYLE+Y+EE RDLL+ + R +LRE+ V
Sbjct: 114 QGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNV 173
Query: 75 YVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSM 134
+ ++ + + E+ +++ GN R GAT++N SSRSH +F +T+E R S +
Sbjct: 174 VLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRG-RAPSRL 232
Query: 135 -----SQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDG--K 187
Q+ V K + VDLAGSER KTG+TG+RLKE+ +IN SL ALGNVISAL D +
Sbjct: 233 PRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRR 292
Query: 188 NIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAK 239
H+PYRDSK+TR+L+DSLGGN+KT+MIA + P+S +++E+L TL YA+RA+
Sbjct: 293 GSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 152/234 (64%), Gaps = 8/234 (3%)
Query: 12 SAESKGVIPNSFDQIFSHIA-RTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENP 70
+AE+ G+ + +FS + + + +Y I S EIY E +RDLL K+ ++ E+R P
Sbjct: 101 TAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCP 160
Query: 71 D-SG-VYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDV 128
D SG +YV L + ++V +I +V + G+ NRT TN+NEHSSRSHA+ I+T+ D
Sbjct: 161 DGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDC 220
Query: 129 REDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKN 188
S GKLNLVDLAGSER K+GA G RL+EA IN SLSALG+VI+AL +
Sbjct: 221 ----STGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAAL-RSRQ 275
Query: 189 IHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIK 242
HVP+R+SKLT LLQDSL G+SKTLM+ + P N E+L +L++A R ++++
Sbjct: 276 GHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 106/203 (52%), Positives = 141/203 (69%), Gaps = 7/203 (3%)
Query: 42 ASYLEIYQEEIRDLLDKDQSKRYELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNR 101
SYLE+Y E+IRDLL S +RE+ GV V L + K+ +EI ++ NGN NR
Sbjct: 157 VSYLEVYNEQIRDLLV--NSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNR 214
Query: 102 TIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQ-VRVGKLNLVDLAGSERQSKTGATG 160
T T+MN SSRSHA+F I + D + +S++Q VR+ K++L+DLAGSER S +GA G
Sbjct: 215 TQHPTDMNATSSRSHAVFQIYLRQQD--KTASINQNVRIAKMSLIDLAGSERASTSGAKG 272
Query: 161 KRLKEASKINLSLSALGNVISALVDGK--NIHVPYRDSKLTRLLQDSLGGNSKTLMIANI 218
R E + IN SL ALGNVI+AL D K N H+PYR+SKLTRLL+DSLGGN +T+MIA +
Sbjct: 273 TRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAV 332
Query: 219 GPASYNYEESLTTLRYANRAKNI 241
P+S Y+++ TL+YANRAK+I
Sbjct: 333 SPSSVFYDDTYNTLKYANRAKDI 355
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 187 bits (476), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 112/249 (44%), Positives = 154/249 (61%), Gaps = 8/249 (3%)
Query: 4 YMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQS-K 62
Y ++GS++ GVIP + IF I + ++++L+R SY+EIY E I DLL Q K
Sbjct: 93 YTMMGSEDHL---GVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMK 149
Query: 63 RYELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIIT 122
+RE+ + VYV +L + + + + G +R G T MN+ SSRSH IF +
Sbjct: 150 PLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMI 209
Query: 123 IEMSDVREDSSM-SQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVIS 181
+E + E S+ V+V LNLVDLAGSER ++TGA G RLKE IN SL LG VI
Sbjct: 210 LESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIK 269
Query: 182 ALVDGK-NIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKN 240
L DG+ + YRDSKLTR+LQ+SLGGN+KT +I I P S ++E+LT L++A+ AK
Sbjct: 270 KLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPVS--FDETLTALQFASTAKY 327
Query: 241 IKNQPRVNE 249
+KN P VNE
Sbjct: 328 MKNTPYVNE 336
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 151/234 (64%), Gaps = 13/234 (5%)
Query: 16 KGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKR-YELRENPDSGV 74
+G++P + + F I + L+ SYLE+Y+EE RDLL+ + R +LRE+ V
Sbjct: 114 QGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNV 173
Query: 75 YVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSM 134
+ ++ + + E+ +++ GN R GAT++N SSRSH +F +T++ R S +
Sbjct: 174 VLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRG-RAPSRL 232
Query: 135 -----SQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVD---- 185
Q+ V K + VDLAGSER KTG+TG+ KE+ +IN SL ALGNVISAL D
Sbjct: 233 PRPAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRR 292
Query: 186 GKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAK 239
G NI PYRDSK+TR+L+DSLGGN+KT+MIA + P+S +++E+L TL YA+RA+
Sbjct: 293 GSNI--PYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 182 bits (461), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 161/271 (59%), Gaps = 17/271 (6%)
Query: 17 GVIPNSFDQIFSHIARTENK-QYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDSG-- 73
G+ P + ++F + + NK + ++A +E+YQ+ + DLL Q+KR +L DS
Sbjct: 105 GLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGM 164
Query: 74 VYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSS 133
V V+N+ +E++ ++Q G+ R T MNE SSRSH I + IE ++++ +
Sbjct: 165 VSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQA- 223
Query: 134 MSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIHVPY 193
+ GKL+ VDLAGSER K+G+ G +LKEA IN SLSALG+VISAL G N H+PY
Sbjct: 224 ---IARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSG-NQHIPY 279
Query: 194 RDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNEDPKE 253
R+ KLT L+ DSLGGN+KTLM NI PA N +E+ +L YA+R ++I N P N K
Sbjct: 280 RNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSK- 338
Query: 254 ALLREYQEEIQRLKNLLNQRTVQPSSKLNDE 284
E+ RLK L++ Q K +DE
Sbjct: 339 --------EVARLKKLVSYWKEQAGRKGDDE 361
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 181 bits (459), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 105/246 (42%), Positives = 150/246 (60%), Gaps = 10/246 (4%)
Query: 9 SKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRE 68
S E G+IP + +F + R +Y +R SYLE+Y EE+ DLL D + + + +
Sbjct: 129 SWEDDSDIGIIPRALSHLFDEL-RMMEVEYTMRISYLELYNEELCDLLSTDDTTKIRIFD 187
Query: 69 NPD--SGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMS 126
+ V ++ L+ + ++ ++++ G R T MN SSRSH +F I +
Sbjct: 188 DSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVH-- 245
Query: 127 DVREDS--SMSQVRVGKLNLVDLAGSERQSKTG-ATGKRLKEASKINLSLSALGNVISAL 183
+RE+ +++GKLNLVDLAGSE SK G G R++E IN SL LG VI+AL
Sbjct: 246 -IRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITAL 304
Query: 184 VDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKN 243
VD + HVPYR+SKLTRLLQ+SLGG +KT +IA I P + EE+L+TL YA+RAKNI+N
Sbjct: 305 VD-RAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQN 363
Query: 244 QPRVNE 249
+P VN+
Sbjct: 364 KPEVNQ 369
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/272 (39%), Positives = 160/272 (58%), Gaps = 17/272 (6%)
Query: 17 GVIPNSFDQIFSHIARTENK-QYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDSG-- 73
G+ P + ++F+ + R + + ++A +E+YQ+ + DLL ++R +L DS
Sbjct: 113 GLTPRATKELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGM 172
Query: 74 VYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSS 133
V+V+N+ + ++E+ +++ G+ R + TNMNE SSRSH I + IE D++ S+
Sbjct: 173 VFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQSA 232
Query: 134 MSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIHVPY 193
GKL+ VDLAGSER K+G+ G +LKEA IN SLSALG+VI AL G N H+PY
Sbjct: 233 AR----GKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSG-NQHIPY 287
Query: 194 RDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNEDPKE 253
R+ KLT L+ DSLGGN+KTLM N+ PA N +E+ +L YA+R + I N P + KE
Sbjct: 288 RNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDPSKHISSKE 347
Query: 254 ALLREYQEEIQRLKNLLNQRTVQPSSKLNDEN 285
+ RLK L+ Q K +E+
Sbjct: 348 MV---------RLKKLVAYWKEQAGKKGEEED 370
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 142/243 (58%), Gaps = 11/243 (4%)
Query: 12 SAESKGVIPNSFDQIFSHIARTENKQ-----YLIRASYLEIYQEEIRDLLDKDQSKRYEL 66
S E GVIP + + + R E + + SYLEIYQE++ DLLD S +
Sbjct: 119 SPEQPGVIPRALMDLL-QLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDP-ASGDLVI 176
Query: 67 RENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMS 126
RE+ + + L + + E+ + NRT+GAT +N+ SSRSHA+ ++ +
Sbjct: 177 REDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKV--- 233
Query: 127 DVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDG 186
D RE + + R GKL L+DLAGSE +TG G RLKE+ IN SL LG V+ AL G
Sbjct: 234 DQRERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQG 293
Query: 187 KNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPR 246
VPYRDSKLTRLLQDSLGG++ +++IANI P Y ++++ L +A R+K + N+P
Sbjct: 294 LP-RVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPF 352
Query: 247 VNE 249
NE
Sbjct: 353 TNE 355
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 142/236 (60%), Gaps = 9/236 (3%)
Query: 12 SAESKGVIPNSFDQIFSHIARTENK--QYLIRASYLEIYQEEIRDLLDK--DQSKRYELR 67
S + G+IP S +IF+ I + K Y +R ++EIY E I DLL+ D + +YE++
Sbjct: 481 SHPTNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIK 540
Query: 68 ENPDSG-VYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMS 126
+ +G V N+ + K+ ++ ++ N R+ AT N+HSSRSH+IFII ++
Sbjct: 541 HDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQ-- 598
Query: 127 DVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDG 186
+S + G LNL+DLAGSER + + A G RLKE IN SLS LG+VI +L
Sbjct: 599 --GYNSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLK 656
Query: 187 KNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIK 242
HVPYR+SKLT LL+ SLGGNSKTLM NI P + + E++ +LR+A + N +
Sbjct: 657 DGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTR 712
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 164 bits (415), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 144/241 (59%), Gaps = 19/241 (7%)
Query: 17 GVIPNSFDQIFSHIAR--TENKQYLIRASYLEIYQEEIRDLL----------DKDQSKRY 64
G++P + + IFS I + Y + ++EIY E I DLL D++ ++
Sbjct: 130 GIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKH 189
Query: 65 ELRENPD-SGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITI 123
E+R + + Y+ N+ + + + +++V++ N R+ +T NEHSSRSH+IFII +
Sbjct: 190 EIRHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHL 249
Query: 124 EMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISAL 183
E ++ + G LNLVDLAGSER + + G+RL+E IN SLS LG+VI AL
Sbjct: 250 E----GKNEGTGEKSQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHAL 305
Query: 184 --VDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNI 241
DG+ H+P+R+SKLT LLQ SL G+SKTLM NI PA+ + E++ +LR+A++ N
Sbjct: 306 NSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNNT 365
Query: 242 K 242
K
Sbjct: 366 K 366
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 140/243 (57%), Gaps = 12/243 (4%)
Query: 4 YMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDK----- 58
Y ++G+ E+ + +G++P + Q+F I +R SYLEIY E + DLL
Sbjct: 120 YTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVG 179
Query: 59 DQSKRYELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAI 118
+ ENP GV++K L ++ ++ ++ G NR I + MN++SSRSH I
Sbjct: 180 PSVTPMTIVENPQ-GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCI 238
Query: 119 FIITIEMSD--VREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSAL 176
F I +E + E+ ++ K+NLVDLAGSER K+G+ G+ LKEA+ IN SLS L
Sbjct: 239 FTIYLEAHSRTLSEEKYITS----KINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFL 294
Query: 177 GNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYAN 236
I AL D K H+P+R KLT L+DSLGGN +++ NI + EE+L++LR+A+
Sbjct: 295 EQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFAS 354
Query: 237 RAK 239
R K
Sbjct: 355 RMK 357
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 139/235 (59%), Gaps = 17/235 (7%)
Query: 17 GVIPNSFDQIFSHI--ARTENKQYLIRASYLEIYQEEIRDLLDKDQSKR--------YEL 66
G+IP++ IF+ I +T+ Y + A ++EIY E I DLL D + + +E+
Sbjct: 164 GIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 223
Query: 67 RENPDSGVYVKNLQSYICKNVKE-IEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEM 125
R + ++ + + +E +E +++ N R+ +T NEHSSRSH+IFII +
Sbjct: 224 RHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSG 283
Query: 126 SDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISAL-- 183
S+ + + G LNLVDLAGSER + + G RL+E IN SLSALG+VI AL
Sbjct: 284 SNAKTGAH----SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQ 339
Query: 184 VDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRA 238
D H+P+R+SKLT LLQ SL G+SKTLM NI P+S + E+L +LR+A++
Sbjct: 340 PDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 394
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 133/233 (57%), Gaps = 14/233 (6%)
Query: 14 ESKGVIPNSFDQIFSHI--ARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELR--EN 69
ES GVIP + D +F I R +Y I+A++LEIY E + DLL +Q K E+R +N
Sbjct: 169 ESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQ-KDMEIRMAKN 227
Query: 70 PDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVR 129
+ +YV N+ + + +M NR +T NE SSRSHA+ ++ +
Sbjct: 228 NKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAV----TKLELIG 283
Query: 130 EDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNI 189
+ ++ VG +NLVDLAGSE + T R+ E IN SLS L NVI AL+ ++
Sbjct: 284 RHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQD- 338
Query: 190 HVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIK 242
H+PYR+SKLT LL SLGGNSKTLM N+ P ++ES+ +LR+A + K
Sbjct: 339 HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCK 391
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 133/233 (57%), Gaps = 14/233 (6%)
Query: 14 ESKGVIPNSFDQIFSHI--ARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELR--EN 69
ES GVIP + D +F I R +Y I+A++LEIY E + DLL +Q K E+R +N
Sbjct: 158 ESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQ-KDMEIRMAKN 216
Query: 70 PDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVR 129
+ +YV N+ + + +M NR +T NE SSRSHA+ ++ +
Sbjct: 217 NKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAV----TKLELIG 272
Query: 130 EDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNI 189
+ ++ VG +NLVDLAGSE + T R+ E IN SLS L NVI AL+ ++
Sbjct: 273 RHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQD- 327
Query: 190 HVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIK 242
H+PYR+SKLT LL SLGGNSKTLM N+ P ++ES+ +LR+A + K
Sbjct: 328 HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCK 380
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 95/233 (40%), Positives = 132/233 (56%), Gaps = 14/233 (6%)
Query: 14 ESKGVIPNSFDQIFSHI--ARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELR--EN 69
ES GVIP + D +F I R +Y I+A++LEIY E + DLL +Q K E+R +N
Sbjct: 161 ESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQ-KDMEIRMAKN 219
Query: 70 PDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVR 129
+ +YV N+ + + +M NR +T NE SSRSHA+ ++ +
Sbjct: 220 NKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAV----TKLELIG 275
Query: 130 EDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNI 189
+ ++ VG +NLVDLAGSE + T R+ E IN SLS L NVI AL+ K
Sbjct: 276 RHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQ-KQD 330
Query: 190 HVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIK 242
H+PYR+SKLT LL SLGGNSKTLM N+ P ++ES+ +LR+A + K
Sbjct: 331 HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCK 383
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 150 bits (380), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 133/233 (57%), Gaps = 14/233 (6%)
Query: 14 ESKGVIPNSFDQIFSHI--ARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELR--EN 69
ES GVIP + D +F I R +Y I+A++LEIY E + DLL +Q K E+R +N
Sbjct: 155 ESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQ-KDMEIRMAKN 213
Query: 70 PDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVR 129
+ +YV N+ + + +M NR +T NE SSRSHA+ ++ +
Sbjct: 214 NKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAV----TKLELIG 269
Query: 130 EDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNI 189
+ ++ VG +NLVDLAGSE + T R+ E IN SLS L NVI AL+ ++
Sbjct: 270 RHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQD- 324
Query: 190 HVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIK 242
H+PYR+SKLT LL SLGGNSKTLM N+ P ++ES+ +LR+A + K
Sbjct: 325 HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCK 377
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 150 bits (379), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 137/236 (58%), Gaps = 19/236 (8%)
Query: 17 GVIPNSFDQIFSHI--ARTENKQYLIRASYLEIYQEEIRDLLDKDQSKR--------YEL 66
G+IP++ IF+ I +T+ Y + ++EIY E I DLL D + + +E+
Sbjct: 119 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 178
Query: 67 RENPDSGVYVKNLQSYICKNVKE--IEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIE 124
R + ++ + CK E +E +++ N R+ +T NEHSSRSH+IFII +
Sbjct: 179 RHDQETKTTTITNVTS-CKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLS 237
Query: 125 MSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISAL- 183
S+ + + G LNLVDLAGSER + + G RL+E IN SLS LG+VI AL
Sbjct: 238 GSNAKTGAH----SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALG 293
Query: 184 -VDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRA 238
D H+P+R+SKLT LLQ SL G+SKTLM NI P+S + E+L +LR+A++
Sbjct: 294 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 349
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 137/236 (58%), Gaps = 19/236 (8%)
Query: 17 GVIPNSFDQIFSHI--ARTENKQYLIRASYLEIYQEEIRDLLDKDQSKR--------YEL 66
G+IP++ IF+ I +T+ Y + ++EIY E I DLL D + + +E+
Sbjct: 107 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 166
Query: 67 RENPDSGVYVKNLQSYICKNVKE--IEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIE 124
R + ++ + CK E +E +++ N R+ +T NEHSSRSH+IFII +
Sbjct: 167 RHDQETKTTTITNVTS-CKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLS 225
Query: 125 MSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISAL- 183
S+ + + G LNLVDLAGSER + + G RL+E IN SLS LG+VI AL
Sbjct: 226 GSNAKTGAH----SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALG 281
Query: 184 -VDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRA 238
D H+P+R+SKLT LLQ SL G+SKTLM NI P+S + E+L +LR+A++
Sbjct: 282 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 337
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 132/233 (56%), Gaps = 14/233 (6%)
Query: 14 ESKGVIPNSFDQIFSHI--ARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELR--EN 69
ES GVIP + D +F I R +Y I+A++LEIY E + DLL +Q K E+R +N
Sbjct: 158 ESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQ-KDMEIRMAKN 216
Query: 70 PDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVR 129
+ +YV N+ + + +M NR +T NE SSRSHA+ ++ +
Sbjct: 217 NKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAV----TKLELIG 272
Query: 130 EDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNI 189
+ ++ VG +NLVDLAGSE + T R+ E I SLS L NVI AL+ ++
Sbjct: 273 RHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNIKRSLSELTNVILALLQKQD- 327
Query: 190 HVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIK 242
H+PYR+SKLT LL SLGGNSKTLM N+ P ++ES+ +LR+A + K
Sbjct: 328 HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCK 380
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 148 bits (373), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 93/236 (39%), Positives = 136/236 (57%), Gaps = 19/236 (8%)
Query: 17 GVIPNSFDQIFSHI--ARTENKQYLIRASYLEIYQEEIRDLLDKDQSKR--------YEL 66
G+IP++ IF+ I +T+ Y + ++EIY E I DLL D + + +E+
Sbjct: 108 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 167
Query: 67 RENPDSGVYVKNLQSYICKNVKE--IEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIE 124
R + ++ + CK E +E +++ N R+ +T NEHSSRSH+IFII +
Sbjct: 168 RHDQETKTTTITNVTS-CKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLS 226
Query: 125 MSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISAL- 183
S+ + + G LNLVDLAGS R + + G RL+E IN SLS LG+VI AL
Sbjct: 227 GSNAKTGAH----SYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALG 282
Query: 184 -VDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRA 238
D H+P+R+SKLT LLQ SL G+SKTLM NI P+S + E+L +LR+A++
Sbjct: 283 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 147 bits (372), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 93/236 (39%), Positives = 136/236 (57%), Gaps = 19/236 (8%)
Query: 17 GVIPNSFDQIFSHI--ARTENKQYLIRASYLEIYQEEIRDLLDKDQSKR--------YEL 66
G+IP++ IF+ I +T+ Y + ++EIY E I DLL D + + +E+
Sbjct: 108 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 167
Query: 67 RENPDSGVYVKNLQSYICKNVKE--IEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIE 124
R + ++ + CK E +E +++ N R+ +T NEHSSRSH+IFII +
Sbjct: 168 RHDQETKTTTITNVTS-CKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLS 226
Query: 125 MSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISAL- 183
S+ + + G LNLVDLAGSER + + G RL+E I SLS LG+VI AL
Sbjct: 227 GSNAKTGAH----SYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALG 282
Query: 184 -VDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRA 238
D H+P+R+SKLT LLQ SL G+SKTLM NI P+S + E+L +LR+A++
Sbjct: 283 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 147 bits (372), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 93/236 (39%), Positives = 136/236 (57%), Gaps = 19/236 (8%)
Query: 17 GVIPNSFDQIFSHI--ARTENKQYLIRASYLEIYQEEIRDLLDKDQSKR--------YEL 66
G+IP++ IF+ I +T+ Y + ++EIY E I DLL D + + +E+
Sbjct: 108 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 167
Query: 67 RENPDSGVYVKNLQSYICKNVKE--IEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIE 124
R + ++ + CK E +E +++ N R+ +T NEHSS SH+IFII +
Sbjct: 168 RHDQETKTTTITNVTS-CKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLS 226
Query: 125 MSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISAL- 183
S+ + + G LNLVDLAGSER + + G RL+E IN SLS LG+VI AL
Sbjct: 227 GSNAKTGAH----SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALG 282
Query: 184 -VDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRA 238
D H+P+R+SKLT LLQ SL G+SKTLM NI P+S + E+L +LR+A++
Sbjct: 283 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 140/241 (58%), Gaps = 19/241 (7%)
Query: 17 GVIPNSFDQIFSHIARTENK--QYLIRASYLEIYQEEIRDLLDKDQS----------KRY 64
G+IP + IF A + + Y + Y+EIY E I DLL +S +++
Sbjct: 109 GMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKH 168
Query: 65 ELRENPD-SGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITI 123
++R + + G Y+ N+ + +++ +++ + R+ AT NE SSRSH++F++ I
Sbjct: 169 DIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHI 228
Query: 124 EMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISAL 183
++ + SQ GKLNLVDLAGSER + + TG+RL+E IN SLS LG+VI AL
Sbjct: 229 NGRNLHTGET-SQ---GKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYAL 284
Query: 184 --VDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNI 241
D ++P+R+SKLT LLQ SL G+SKTLM NI P + E+L +LR+A++ +
Sbjct: 285 NTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNST 344
Query: 242 K 242
K
Sbjct: 345 K 345
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 133/243 (54%), Gaps = 19/243 (7%)
Query: 8 GSKESAESKGVIPNSFDQIFSHIARTENKQ---YLIRASYLEIYQEEIRDLLD----KDQ 60
G + +G+IP + +FS +A+ + Q Y ASY+EIY E +RDLL K Q
Sbjct: 136 GPGGDPQLEGLIPRALRHLFS-VAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQ 194
Query: 61 SKRYELR-ENPDSG-VYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAI 118
E+R P S + V N + KE++ ++ NR + T NE SSRSH++
Sbjct: 195 GGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSV 254
Query: 119 FIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGK----RLKEASKINLSLS 174
F + I E SS L+LVDLAGSER A G RL+E IN SLS
Sbjct: 255 FQLQIS----GEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLS 310
Query: 175 ALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRY 234
LG VI AL + K HVPYR+SKLT LLQ+SLGG++K LM NI P N ESL +LR+
Sbjct: 311 TLGLVIMALSN-KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRF 369
Query: 235 ANR 237
A++
Sbjct: 370 ASK 372
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 133/232 (57%), Gaps = 18/232 (7%)
Query: 15 SKGVIPNSFDQIFSHIARTENK--QYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDS 72
SKG+ + +F + + K + + A++ EIY ++ DLL++ R + E+
Sbjct: 202 SKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRKTKLR--VLEDGKQ 259
Query: 73 GVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDS 132
V V LQ K V+++ +++ GN RT G T+ N HSSRSHA+F I + R
Sbjct: 260 QVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIIL-----RRKG 314
Query: 133 SMSQVRVGKLNLVDLAGSERQSKTGATGKRLK-EASKINLSLSALGNVISALVDGKN-IH 190
+ GK +L+DLAG+ER + T + ++ + E ++IN SL AL I AL G+N H
Sbjct: 315 KLH----GKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRAL--GRNKPH 368
Query: 191 VPYRDSKLTRLLQDS-LGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNI 241
P+R SKLT++L+DS +G NS+T MIA I P + E +L TLRYANR K +
Sbjct: 369 TPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 139/242 (57%), Gaps = 16/242 (6%)
Query: 4 YMIIGSKESAES--KGVIPNSFDQIFS--HIARTENKQYLIRASYLEIYQEEIRDLLDKD 59
Y ++GS+ +S G+ + IF+ +I +N + I S+ EIY ++ DLL K
Sbjct: 100 YTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKG-IFISFYEIYCGKLYDLLQK- 157
Query: 60 QSKRYELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIF 119
K EN V VK+L+ +E+ M +G R IG + N+ SSRSHAI
Sbjct: 158 -RKMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAI- 215
Query: 120 IITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLK-EASKINLSLSALGN 178
+ I++ D+ +++S+ GK+ +DLAGSER + T + K+ + + + IN SL AL
Sbjct: 216 -LNIDLKDINKNTSL-----GKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKE 269
Query: 179 VISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRA 238
I A+ KN H+P+RDS+LT++L+D G SK++MIANI P E++L TLRY++R
Sbjct: 270 CIRAMDSDKN-HIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRV 328
Query: 239 KN 240
KN
Sbjct: 329 KN 330
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 131/240 (54%), Gaps = 18/240 (7%)
Query: 7 IGSKESAESKGVIPNSFDQIF--SHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRY 64
+ K SKG+ + +F + R N + ++ EIY ++ DLL+K R
Sbjct: 176 LSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLR- 234
Query: 65 ELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIE 124
+ E+ V V LQ Y+ ++ +++ G+ RT G T N +SSRSHA F I +
Sbjct: 235 -VLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILL- 292
Query: 125 MSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLK-EASKINLSLSALGNVISAL 183
R + GK +LVDLAG+ER + T + ++ + E ++IN SL AL I AL
Sbjct: 293 ----RTKGRLH----GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL 344
Query: 184 VDGKN-IHVPYRDSKLTRLLQDS-LGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNI 241
G+N H P+R+SKLT++L+DS +G NS+T MIA I P + E +L TLRYA+R K +
Sbjct: 345 --GQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 402
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 119/235 (50%), Gaps = 27/235 (11%)
Query: 14 ESKGVIPNSFDQIFSHI-ARTENKQYLIR--ASYLEIYQEEIRDLLDKDQSKRYELRENP 70
E G++P + IF + AR EN + I+ AS++EIY E+ DLL P
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGS----------TP 172
Query: 71 DSGVYVKNLQSYICKNVK---EIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSD 127
+ Q C + ++ +++ G NR + TNMN +SSRSHAI I ++
Sbjct: 173 HMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVK--- 229
Query: 128 VREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGK 187
S+ ++N+VDLAGSE +TG G +E INL L ++ V+ ++ G
Sbjct: 230 -------SKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH 282
Query: 188 NIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIK 242
+ +PYRDS LT +LQ SL S +A I P + E+L+TLR+ AK ++
Sbjct: 283 TV-IPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKLR 336
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 120/205 (58%), Gaps = 16/205 (7%)
Query: 40 IRASYLEIYQEEIRDLLDKDQSKRYELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNF 99
+ ++ EIY ++ DLL+K R + E+ V V LQ ++ + ++ +++ G+
Sbjct: 191 VYVTFFEIYNGKLFDLLNKKAKLR--VLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSA 248
Query: 100 NRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGAT 159
RT G T N +SSRSHA F I + R M GK +LVDLAG+ER + T +
Sbjct: 249 CRTSGQTFANSNSSRSHACFQIIL-----RAKGRMH----GKFSLVDLAGNERGADTSSA 299
Query: 160 GKRLK-EASKINLSLSALGNVISALVDGKN-IHVPYRDSKLTRLLQDS-LGGNSKTLMIA 216
++ + E ++IN SL AL I AL G+N H P+R+SKLT++L+DS +G NS+T MIA
Sbjct: 300 DRQTRMEGAEINKSLLALKECIRAL--GQNKAHTPFRESKLTQVLRDSFIGENSRTCMIA 357
Query: 217 NIGPASYNYEESLTTLRYANRAKNI 241
I P + E +L TLRYA+R K +
Sbjct: 358 TISPGISSCEYTLNTLRYADRVKEL 382
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 117 bits (294), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 131/240 (54%), Gaps = 18/240 (7%)
Query: 7 IGSKESAESKGVIPNSFDQIF--SHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRY 64
+ K SKG+ + +F + R N + ++ EIY ++ DLL+K R
Sbjct: 104 LSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLR- 162
Query: 65 ELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIE 124
+ E+ V V LQ Y+ ++ +++ G+ RT G T N +SSRSHA F I +
Sbjct: 163 -VLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILL- 220
Query: 125 MSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLK-EASKINLSLSALGNVISAL 183
R + GK +LVDLAG+ER + T + ++ + E ++IN SL AL I AL
Sbjct: 221 ----RTKGRLH----GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL 272
Query: 184 VDGKN-IHVPYRDSKLTRLLQDS-LGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNI 241
G+N H P+R+SKLT++L+DS +G NS+T MIA I P + E +L TLRYA+R K +
Sbjct: 273 --GQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 330
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 117/232 (50%), Gaps = 27/232 (11%)
Query: 14 ESKGVIPNSFDQIFSHI-ARTENKQYLIR--ASYLEIYQEEIRDLLDKDQSKRYELRENP 70
E G++P + IF + AR EN + I+ AS++EIY E+ DLL P
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGS----------TP 172
Query: 71 DSGVYVKNLQSYICKNV---KEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSD 127
+ Q C + ++ +++ G NR + TNMN +SSRSHAI I ++
Sbjct: 173 HMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVK--- 229
Query: 128 VREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGK 187
S+ ++N+VDLAGSE +TG G +E INL L ++ V+ ++ G
Sbjct: 230 -------SKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH 282
Query: 188 NIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAK 239
+ +PYRDS LT +LQ SL S +A I P + E+L+TLR+ AK
Sbjct: 283 TV-IPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 6/146 (4%)
Query: 8 GSKESAESKGVIPNSFDQIFSHI-ARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYEL 66
G + G+IP IF HI + EN ++ I+ SY EIY ++IRDLLD ++ +
Sbjct: 97 GKLHDPQLMGIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKT-NLAV 155
Query: 67 RENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMS 126
E+ + YVK + +E+ V+ G NR + TNMNEHSSRSH+IF+I I+
Sbjct: 156 HEDKNRVPYVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQE 215
Query: 127 DVREDSSMSQVRVGKLNLVDLAGSER 152
+V + +S GKL LVDLAGSE+
Sbjct: 216 NVETEKKLS----GKLYLVDLAGSEK 237
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 57/79 (72%)
Query: 170 NLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESL 229
N SLSALGNVISAL +G HVPYRDSK+TR+LQDSLGGN +T ++ P+ +N E+
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 230 TTLRYANRAKNIKNQPRVN 248
+TL + RAK IKN VN
Sbjct: 61 STLMFGQRAKTIKNTVSVN 79
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 58/83 (69%)
Query: 166 ASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNY 225
A IN SLSALGNVISAL +G HVPYRDSK+TR+LQDSL GN +T ++ P+ +N
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 226 EESLTTLRYANRAKNIKNQPRVN 248
E+ +TL + RAK IKN VN
Sbjct: 61 AETKSTLMFGQRAKTIKNTVSVN 83
>pdb|3T9P|A Chain A, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE
Lactonizing Enzyme Family Protein From Roseovarius
pdb|3T9P|B Chain B, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE
Lactonizing Enzyme Family Protein From Roseovarius
Length = 388
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 175 ALGNVISALVDGKNIHVPYRDSKLTRLLQD 204
ALG+ I LVDG + + P R ++ +LLQD
Sbjct: 195 ALGDGIEKLVDGNSCYSPARAIEVGKLLQD 224
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|B Chain B, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|C Chain C, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|D Chain D, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
Length = 386
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 213 LMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNEDPKEALLREYQEEIQRLKN 268
+++ IG A YN + L L N + + +NE+ E L EY EI R+ N
Sbjct: 185 VVVNGIGAAGYNIVKFLLDLGVKNVVA-VDRKGILNENDPETCLNEYHLEIARITN 239
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|B Chain B, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|C Chain C, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|D Chain D, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
Length = 388
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 213 LMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNEDPKEALLREYQEEIQRLKN 268
+++ IG A YN + L L N + + +NE+ E L EY EI R+ N
Sbjct: 195 VVVNGIGAAGYNIVKFLLDLGVKNVVA-VDRKGILNENDPETCLNEYHLEIARITN 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.127 0.331
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,378,912
Number of Sequences: 62578
Number of extensions: 375928
Number of successful extensions: 1393
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1147
Number of HSP's gapped (non-prelim): 111
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)