Query psy8840
Match_columns 355
No_of_seqs 291 out of 1721
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 20:29:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4280|consensus 100.0 2.6E-82 5.7E-87 634.3 18.7 351 2-355 99-451 (574)
2 KOG0245|consensus 100.0 6.6E-79 1.4E-83 624.2 23.8 273 2-275 101-382 (1221)
3 KOG0243|consensus 100.0 6.9E-76 1.5E-80 611.2 29.2 345 2-349 142-517 (1041)
4 KOG0240|consensus 100.0 3E-69 6.5E-74 528.5 27.6 254 2-260 96-351 (607)
5 PLN03188 kinesin-12 family pro 100.0 2.6E-68 5.6E-73 559.8 27.3 268 2-270 179-469 (1320)
6 KOG0242|consensus 100.0 1.7E-68 3.6E-73 552.7 23.4 267 2-277 100-368 (675)
7 KOG0241|consensus 100.0 2.4E-68 5.3E-73 539.0 23.6 270 2-274 107-384 (1714)
8 cd01373 KISc_KLP2_like Kinesin 100.0 3.1E-65 6.7E-70 495.5 24.1 237 2-241 88-337 (337)
9 cd01370 KISc_KIP3_like Kinesin 100.0 7.6E-65 1.7E-69 493.0 24.3 235 2-241 101-338 (338)
10 cd01365 KISc_KIF1A_KIF1B Kines 100.0 2.8E-63 6.1E-68 485.4 25.8 244 2-248 102-356 (356)
11 cd01368 KISc_KIF23_like Kinesi 100.0 2.8E-63 6.1E-68 483.1 24.1 230 2-239 102-345 (345)
12 cd01364 KISc_BimC_Eg5 Kinesin 100.0 4.9E-63 1.1E-67 483.1 25.6 246 2-250 95-352 (352)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 4.3E-63 9.2E-68 480.0 24.9 239 2-241 95-333 (333)
14 cd01375 KISc_KIF9_like Kinesin 100.0 9.7E-62 2.1E-66 470.6 24.8 236 2-239 94-334 (334)
15 cd01369 KISc_KHC_KIF5 Kinesin 100.0 5.6E-61 1.2E-65 463.9 25.2 235 2-241 90-325 (325)
16 cd01374 KISc_CENP_E Kinesin mo 100.0 5.2E-61 1.1E-65 463.3 23.8 234 2-241 87-321 (321)
17 cd01372 KISc_KIF4 Kinesin moto 100.0 8.5E-61 1.8E-65 465.5 24.8 241 2-242 87-341 (341)
18 cd01367 KISc_KIF2_like Kinesin 100.0 1E-60 2.2E-65 461.3 23.0 224 2-239 98-322 (322)
19 cd01376 KISc_KID_like Kinesin 100.0 2.2E-60 4.7E-65 458.6 23.3 226 2-239 94-319 (319)
20 cd01366 KISc_C_terminal Kinesi 100.0 5.9E-59 1.3E-63 450.5 24.8 235 2-244 91-329 (329)
21 KOG0247|consensus 100.0 7.3E-59 1.6E-63 465.5 25.0 243 2-249 128-444 (809)
22 smart00129 KISc Kinesin motor, 100.0 8.5E-58 1.8E-62 443.4 25.1 241 2-248 93-335 (335)
23 PF00225 Kinesin: Kinesin moto 100.0 9.9E-59 2.1E-63 449.8 18.1 239 2-241 88-335 (335)
24 KOG0244|consensus 100.0 1.4E-59 3.1E-64 482.5 10.0 269 2-274 79-350 (913)
25 KOG0239|consensus 100.0 8.4E-58 1.8E-62 471.5 15.0 240 2-248 406-647 (670)
26 cd00106 KISc Kinesin motor dom 100.0 1E-55 2.3E-60 427.5 25.0 233 2-239 92-328 (328)
27 KOG0246|consensus 100.0 4.4E-54 9.5E-59 420.8 20.7 235 2-246 305-546 (676)
28 COG5059 KIP1 Kinesin-like prot 100.0 4.4E-51 9.5E-56 418.8 24.7 240 2-249 103-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 3.5E-41 7.6E-46 301.1 14.9 129 90-220 58-186 (186)
30 COG5059 KIP1 Kinesin-like prot 93.2 0.015 3.3E-07 60.7 -1.6 81 96-184 486-566 (568)
31 PRK10884 SH3 domain-containing 88.4 12 0.00027 33.9 12.6 24 251-274 90-113 (206)
32 COG2433 Uncharacterized conser 87.9 6.9 0.00015 40.8 11.7 31 319-349 478-508 (652)
33 KOG0971|consensus 87.4 9.6 0.00021 41.5 12.6 46 308-353 389-434 (1243)
34 PF13851 GAS: Growth-arrest sp 81.0 31 0.00067 31.2 11.7 19 253-271 26-44 (201)
35 KOG0239|consensus 80.4 3.4 7.4E-05 44.1 6.0 48 3-59 65-112 (670)
36 KOG0963|consensus 78.1 32 0.0007 36.1 11.9 94 253-346 248-341 (629)
37 PRK10884 SH3 domain-containing 75.4 22 0.00048 32.3 9.0 18 257-274 89-106 (206)
38 PF08317 Spc7: Spc7 kinetochor 75.3 30 0.00064 33.6 10.5 7 201-207 105-111 (325)
39 KOG1962|consensus 74.7 31 0.00066 31.6 9.6 35 312-346 176-210 (216)
40 PF15254 CCDC14: Coiled-coil d 73.4 52 0.0011 35.5 12.1 12 224-235 331-342 (861)
41 PF15619 Lebercilin: Ciliary p 72.9 69 0.0015 28.8 11.5 18 254-271 61-78 (194)
42 PRK11637 AmiB activator; Provi 71.5 1.2E+02 0.0025 30.6 14.3 19 253-271 46-64 (428)
43 PF04111 APG6: Autophagy prote 70.8 27 0.00059 33.8 9.0 16 255-270 10-25 (314)
44 PF15290 Syntaphilin: Golgi-lo 70.7 39 0.00085 32.0 9.4 13 337-349 157-169 (305)
45 PF08317 Spc7: Spc7 kinetochor 70.3 71 0.0015 31.0 11.8 16 336-351 276-291 (325)
46 PF09726 Macoilin: Transmembra 68.6 42 0.0009 36.2 10.5 21 253-273 417-437 (697)
47 PF10168 Nup88: Nuclear pore c 67.6 31 0.00067 37.3 9.3 40 312-352 630-669 (717)
48 PRK11637 AmiB activator; Provi 67.2 93 0.002 31.3 12.3 7 255-261 171-177 (428)
49 PF14662 CCDC155: Coiled-coil 66.0 49 0.0011 29.7 8.7 51 298-348 78-128 (193)
50 COG2433 Uncharacterized conser 65.9 71 0.0015 33.6 11.0 17 217-233 335-351 (652)
51 KOG0994|consensus 64.1 1.3E+02 0.0028 34.3 13.0 42 228-271 1177-1218(1758)
52 PF15619 Lebercilin: Ciliary p 61.8 1.2E+02 0.0026 27.2 11.1 16 335-350 177-192 (194)
53 PF04111 APG6: Autophagy prote 61.0 1.6E+02 0.0034 28.5 12.1 7 338-344 115-121 (314)
54 KOG3990|consensus 61.0 63 0.0014 30.2 8.7 21 254-274 225-245 (305)
55 smart00787 Spc7 Spc7 kinetocho 60.5 93 0.002 30.1 10.4 29 323-351 233-261 (312)
56 PF09766 FimP: Fms-interacting 59.9 90 0.002 30.7 10.4 59 291-350 92-150 (355)
57 KOG2129|consensus 59.3 51 0.0011 33.0 8.3 34 241-274 237-273 (552)
58 COG4026 Uncharacterized protei 59.3 65 0.0014 29.6 8.3 6 212-217 60-65 (290)
59 PF15070 GOLGA2L5: Putative go 57.6 67 0.0014 34.2 9.5 16 256-271 89-104 (617)
60 PF13864 Enkurin: Calmodulin-b 57.0 95 0.002 24.4 10.0 41 312-352 37-90 (98)
61 KOG0163|consensus 56.3 1.1E+02 0.0025 33.2 10.6 13 18-30 428-440 (1259)
62 PF04380 BMFP: Membrane fusoge 56.3 25 0.00054 26.8 4.6 30 322-351 50-79 (79)
63 KOG1029|consensus 56.1 1.3E+02 0.0028 32.8 11.0 17 336-352 444-460 (1118)
64 KOG1853|consensus 55.6 1.8E+02 0.004 27.3 11.7 16 320-335 113-128 (333)
65 KOG0995|consensus 55.1 1.4E+02 0.0031 31.2 11.0 57 292-349 310-366 (581)
66 KOG0933|consensus 54.4 94 0.002 34.7 10.0 36 79-114 548-583 (1174)
67 PF09726 Macoilin: Transmembra 53.1 1E+02 0.0023 33.3 10.2 29 322-350 629-657 (697)
68 KOG0804|consensus 52.9 1.5E+02 0.0032 30.2 10.3 13 114-126 147-159 (493)
69 PF05529 Bap31: B-cell recepto 52.9 77 0.0017 28.0 8.0 35 316-350 155-189 (192)
70 smart00787 Spc7 Spc7 kinetocho 52.9 1.9E+02 0.0041 28.0 11.1 16 336-351 271-286 (312)
71 PF04849 HAP1_N: HAP1 N-termin 52.4 1.5E+02 0.0032 28.6 10.1 21 254-274 167-187 (306)
72 KOG0995|consensus 52.3 2E+02 0.0044 30.1 11.5 15 336-350 339-353 (581)
73 KOG0250|consensus 51.2 1E+02 0.0022 34.6 9.8 14 90-103 78-91 (1074)
74 PF06785 UPF0242: Uncharacteri 50.6 71 0.0015 31.1 7.5 25 250-274 130-154 (401)
75 PF00038 Filament: Intermediat 49.7 2.3E+02 0.0051 26.8 11.3 21 222-242 164-186 (312)
76 PF12325 TMF_TATA_bd: TATA ele 48.1 1.6E+02 0.0034 24.4 11.2 24 248-271 10-33 (120)
77 PF04568 IATP: Mitochondrial A 47.7 80 0.0017 25.3 6.4 14 332-345 86-99 (100)
78 PF08232 Striatin: Striatin fa 47.7 1E+02 0.0022 25.9 7.4 39 314-352 24-62 (134)
79 TIGR02449 conserved hypothetic 46.9 1.1E+02 0.0025 22.4 8.1 30 321-350 34-63 (65)
80 KOG2751|consensus 46.6 3.3E+02 0.0071 27.6 11.8 73 190-271 83-160 (447)
81 PF12252 SidE: Dot/Icm substra 46.4 4.9E+02 0.011 29.7 13.7 20 255-274 1064-1083(1439)
82 PF04880 NUDE_C: NUDE protein, 46.4 23 0.0005 31.1 3.4 31 315-346 24-54 (166)
83 COG4942 Membrane-bound metallo 46.0 3E+02 0.0065 27.9 11.4 22 328-349 223-244 (420)
84 PF06637 PV-1: PV-1 protein (P 46.0 1.1E+02 0.0024 30.3 8.2 11 192-202 240-250 (442)
85 KOG0977|consensus 45.8 1.9E+02 0.0041 30.3 10.3 92 161-273 36-132 (546)
86 COG2960 Uncharacterized protei 44.4 54 0.0012 26.2 4.8 32 322-353 59-90 (103)
87 PF09738 DUF2051: Double stran 43.7 2.9E+02 0.0063 26.6 10.7 17 255-271 78-94 (302)
88 TIGR02977 phageshock_pspA phag 43.1 2.6E+02 0.0056 25.4 11.4 21 253-273 30-50 (219)
89 PF10186 Atg14: UV radiation r 41.5 2.9E+02 0.0064 25.6 11.0 8 261-268 34-41 (302)
90 PF07888 CALCOCO1: Calcium bin 41.3 3.9E+02 0.0085 28.0 11.8 12 141-152 91-102 (546)
91 PF00038 Filament: Intermediat 41.3 3.1E+02 0.0068 25.9 11.8 32 319-350 100-131 (312)
92 PRK10698 phage shock protein P 40.8 2.9E+02 0.0062 25.3 11.4 21 253-273 30-50 (222)
93 TIGR02231 conserved hypothetic 40.7 3.1E+02 0.0067 28.3 11.3 18 254-271 71-88 (525)
94 PF11068 YlqD: YlqD protein; 40.4 1.7E+02 0.0037 24.6 7.6 31 242-272 8-38 (131)
95 PF04012 PspA_IM30: PspA/IM30 40.3 2.8E+02 0.006 24.9 11.2 21 253-273 29-49 (221)
96 KOG1853|consensus 40.1 3.2E+02 0.007 25.7 11.1 8 260-267 65-72 (333)
97 PF04912 Dynamitin: Dynamitin 40.1 3E+02 0.0066 27.3 10.7 23 252-274 92-114 (388)
98 KOG1962|consensus 40.0 1.4E+02 0.0031 27.3 7.5 26 319-344 162-187 (216)
99 PF04102 SlyX: SlyX; InterPro 39.6 1.4E+02 0.0029 22.0 6.2 32 318-349 21-52 (69)
100 KOG0982|consensus 39.4 4.2E+02 0.0091 26.9 11.1 14 85-98 77-90 (502)
101 PF15290 Syntaphilin: Golgi-lo 39.0 1.8E+02 0.0039 27.7 8.1 11 261-271 89-99 (305)
102 PF13094 CENP-Q: CENP-Q, a CEN 38.5 1.7E+02 0.0036 25.1 7.6 6 235-240 3-8 (160)
103 KOG1029|consensus 38.5 1.6E+02 0.0035 32.1 8.5 18 16-33 44-61 (1118)
104 KOG4196|consensus 38.4 2.4E+02 0.0052 23.7 7.9 41 311-351 77-117 (135)
105 PF10393 Matrilin_ccoil: Trime 38.3 66 0.0014 22.1 3.9 17 337-353 31-47 (47)
106 PRK02224 chromosome segregatio 38.2 2.5E+02 0.0054 30.9 10.7 16 256-271 182-197 (880)
107 PF10168 Nup88: Nuclear pore c 37.8 1.1E+02 0.0025 33.1 7.7 22 331-352 694-715 (717)
108 PLN03230 acetyl-coenzyme A car 37.7 1.3E+02 0.0028 30.5 7.4 67 230-307 56-122 (431)
109 COG1579 Zn-ribbon protein, pos 37.6 3.4E+02 0.0074 25.3 11.3 13 258-270 63-75 (239)
110 PRK00846 hypothetical protein; 37.4 1.8E+02 0.004 22.1 7.8 37 316-352 28-64 (77)
111 PF14915 CCDC144C: CCDC144C pr 36.2 2.7E+02 0.006 26.7 9.0 27 325-351 73-99 (305)
112 COG3883 Uncharacterized protei 35.8 2E+02 0.0044 27.2 8.0 21 251-271 35-55 (265)
113 TIGR03752 conj_TIGR03752 integ 35.8 3.9E+02 0.0084 27.5 10.5 7 258-264 70-76 (472)
114 PF12240 Angiomotin_C: Angiomo 35.7 3.4E+02 0.0074 24.6 11.0 25 329-353 129-153 (205)
115 PF07889 DUF1664: Protein of u 35.2 2.7E+02 0.0058 23.3 10.7 28 323-350 97-124 (126)
116 KOG4673|consensus 35.2 2.5E+02 0.0054 30.3 9.2 32 321-352 522-553 (961)
117 PRK04778 septation ring format 35.1 2.8E+02 0.0062 29.0 10.0 19 165-183 199-217 (569)
118 KOG0996|consensus 34.8 3.2E+02 0.0069 31.3 10.3 11 85-95 206-216 (1293)
119 PF00769 ERM: Ezrin/radixin/mo 34.7 3.8E+02 0.0082 24.9 10.1 81 253-352 11-91 (246)
120 PF04156 IncA: IncA protein; 34.1 3.2E+02 0.0069 23.8 10.9 23 327-349 163-185 (191)
121 PF11802 CENP-K: Centromere-as 33.7 4.2E+02 0.0091 25.1 12.3 28 244-271 75-102 (268)
122 PF11802 CENP-K: Centromere-as 32.8 4.3E+02 0.0094 25.0 12.2 36 297-333 110-145 (268)
123 TIGR02169 SMC_prok_A chromosom 32.7 4.4E+02 0.0095 29.7 11.7 17 79-95 549-565 (1164)
124 PF03962 Mnd1: Mnd1 family; I 32.1 3.7E+02 0.0079 23.9 10.4 13 173-185 29-41 (188)
125 KOG2991|consensus 32.0 3.1E+02 0.0067 25.9 8.4 19 190-208 94-112 (330)
126 KOG0980|consensus 32.0 6.2E+02 0.014 28.2 11.7 25 247-271 326-350 (980)
127 PF07798 DUF1640: Protein of u 31.8 3.3E+02 0.0071 23.8 8.5 14 258-271 55-68 (177)
128 PF06637 PV-1: PV-1 protein (P 31.7 3E+02 0.0066 27.4 8.7 22 312-333 353-374 (442)
129 PHA02562 46 endonuclease subun 31.6 3.6E+02 0.0079 27.7 10.2 17 255-271 263-279 (562)
130 PF11069 DUF2870: Protein of u 31.4 55 0.0012 26.1 3.0 53 200-267 15-67 (98)
131 PF08657 DASH_Spc34: DASH comp 31.1 2.1E+02 0.0047 26.9 7.5 23 327-349 237-259 (259)
132 PF12128 DUF3584: Protein of u 30.9 6.2E+02 0.014 29.3 12.6 30 324-353 506-535 (1201)
133 PF03962 Mnd1: Mnd1 family; I 30.2 3.9E+02 0.0085 23.7 10.0 12 259-270 81-92 (188)
134 PF12128 DUF3584: Protein of u 29.8 3.3E+02 0.0073 31.4 10.2 9 51-59 529-537 (1201)
135 PF05266 DUF724: Protein of un 29.8 3.2E+02 0.007 24.4 8.1 33 319-351 149-181 (190)
136 PRK00290 dnaK molecular chaper 29.1 5.5E+02 0.012 27.2 11.1 62 291-352 528-595 (627)
137 PF15397 DUF4618: Domain of un 29.0 4.2E+02 0.0092 25.0 9.0 23 328-350 192-214 (258)
138 PF04977 DivIC: Septum formati 28.9 1.7E+02 0.0037 21.3 5.4 26 323-348 25-50 (80)
139 PRK13411 molecular chaperone D 28.8 2.7E+02 0.0059 29.7 8.8 61 292-352 531-599 (653)
140 CHL00094 dnaK heat shock prote 28.7 5.8E+02 0.013 27.0 11.2 64 290-353 529-598 (621)
141 PF14193 DUF4315: Domain of un 28.7 1.2E+02 0.0026 23.4 4.4 14 323-336 19-32 (83)
142 PRK13729 conjugal transfer pil 28.5 3.6E+02 0.0078 27.8 8.9 14 333-346 108-121 (475)
143 COG4499 Predicted membrane pro 28.5 2.5E+02 0.0053 28.1 7.5 44 232-275 347-390 (434)
144 KOG0993|consensus 28.3 2.7E+02 0.0058 28.1 7.7 17 254-270 74-90 (542)
145 PF04420 CHD5: CHD5-like prote 28.0 3.9E+02 0.0085 23.0 8.4 23 251-273 37-59 (161)
146 PF05010 TACC: Transforming ac 27.9 4.2E+02 0.0092 24.0 8.6 14 330-343 183-196 (207)
147 PRK13182 racA polar chromosome 27.8 3.1E+02 0.0067 24.2 7.5 59 292-352 83-141 (175)
148 PF09766 FimP: Fms-interacting 27.7 5.8E+02 0.012 25.1 10.2 27 248-274 27-53 (355)
149 TIGR02169 SMC_prok_A chromosom 27.3 4.9E+02 0.011 29.3 10.9 8 87-94 119-126 (1164)
150 PF04508 Pox_A_type_inc: Viral 27.3 53 0.0012 19.0 1.7 16 337-352 2-17 (23)
151 KOG4348|consensus 27.3 2.2E+02 0.0048 28.9 7.0 57 296-352 568-624 (627)
152 PF04156 IncA: IncA protein; 27.2 4.2E+02 0.0091 23.0 9.5 15 256-270 90-104 (191)
153 TIGR03185 DNA_S_dndD DNA sulfu 26.9 6E+02 0.013 27.1 11.0 8 37-44 84-91 (650)
154 PF14739 DUF4472: Domain of un 26.3 2.3E+02 0.005 23.0 5.9 39 315-353 3-45 (108)
155 COG1842 PspA Phage shock prote 26.1 5.2E+02 0.011 23.8 9.7 19 254-272 31-49 (225)
156 TIGR01554 major_cap_HK97 phage 26.0 2.7E+02 0.0059 27.3 7.7 16 257-272 2-17 (378)
157 PF09727 CortBP2: Cortactin-bi 26.0 3.2E+02 0.007 24.5 7.3 38 295-332 121-158 (192)
158 TIGR02350 prok_dnaK chaperone 25.8 7.4E+02 0.016 25.9 11.3 62 290-351 525-592 (595)
159 PF11853 DUF3373: Protein of u 25.8 64 0.0014 33.2 3.2 31 321-351 30-60 (489)
160 KOG1937|consensus 25.6 3.8E+02 0.0081 27.4 8.3 20 289-308 292-311 (521)
161 PHA02562 46 endonuclease subun 25.6 3.7E+02 0.0081 27.6 9.0 18 85-102 41-58 (562)
162 PRK14127 cell division protein 25.6 2E+02 0.0044 23.4 5.5 14 339-352 88-101 (109)
163 KOG2751|consensus 25.5 7.3E+02 0.016 25.2 11.0 13 340-352 243-255 (447)
164 PRK11281 hypothetical protein; 25.3 3.7E+02 0.008 30.9 9.2 15 254-268 94-108 (1113)
165 PF10498 IFT57: Intra-flagella 25.3 6.7E+02 0.015 24.8 10.5 18 335-352 334-351 (359)
166 KOG0971|consensus 25.3 7.1E+02 0.015 28.0 10.7 18 256-273 341-358 (1243)
167 PF07106 TBPIP: Tat binding pr 25.2 4.4E+02 0.0095 22.6 9.4 23 255-277 87-109 (169)
168 TIGR00606 rad50 rad50. This fa 25.2 3.6E+02 0.0078 31.5 9.5 20 255-274 793-812 (1311)
169 PF13863 DUF4200: Domain of un 25.2 3.6E+02 0.0079 21.7 12.5 14 336-349 88-101 (126)
170 PRK00295 hypothetical protein; 25.1 2.8E+02 0.0061 20.3 7.2 33 319-351 23-55 (68)
171 smart00030 CLb CLUSTERIN Beta 25.1 5.2E+02 0.011 23.4 8.9 13 314-326 42-54 (206)
172 PRK03918 chromosome segregatio 25.0 8.6E+02 0.019 26.6 12.1 12 86-97 38-49 (880)
173 PF05529 Bap31: B-cell recepto 24.9 4.1E+02 0.0089 23.3 8.0 34 311-344 157-190 (192)
174 PF12999 PRKCSH-like: Glucosid 24.9 2.8E+02 0.0062 24.5 6.7 8 341-348 158-165 (176)
175 PF10234 Cluap1: Clusterin-ass 24.7 6.1E+02 0.013 24.0 10.8 15 255-270 136-150 (267)
176 PF11559 ADIP: Afadin- and alp 24.6 4.2E+02 0.0092 22.2 10.7 11 167-177 5-15 (151)
177 PF12004 DUF3498: Domain of un 24.6 25 0.00054 36.2 0.0 20 255-274 370-389 (495)
178 PF14197 Cep57_CLD_2: Centroso 24.5 2.9E+02 0.0064 20.4 9.2 33 316-348 34-66 (69)
179 KOG0964|consensus 24.5 5.1E+02 0.011 29.3 9.6 44 308-351 727-770 (1200)
180 PRK00409 recombination and DNA 24.4 2.6E+02 0.0056 30.7 7.7 8 254-261 520-527 (782)
181 PF08614 ATG16: Autophagy prot 24.3 4.8E+02 0.01 23.0 8.3 18 328-345 164-181 (194)
182 COG4026 Uncharacterized protei 24.3 4.9E+02 0.011 24.1 8.1 7 74-80 11-17 (290)
183 PF07106 TBPIP: Tat binding pr 24.2 3.4E+02 0.0074 23.3 7.2 18 254-271 72-89 (169)
184 PF15070 GOLGA2L5: Putative go 24.0 9E+02 0.02 25.8 11.8 34 319-352 143-176 (617)
185 PRK04325 hypothetical protein; 24.0 3.1E+02 0.0067 20.5 7.1 34 318-351 26-59 (74)
186 PRK00736 hypothetical protein; 23.9 3E+02 0.0065 20.2 6.8 33 319-351 23-55 (68)
187 PF01486 K-box: K-box region; 23.9 3.5E+02 0.0077 21.1 10.6 80 254-345 19-98 (100)
188 KOG0963|consensus 23.8 6.7E+02 0.014 26.7 10.0 18 335-352 195-212 (629)
189 PRK09039 hypothetical protein; 23.7 6.9E+02 0.015 24.4 11.0 17 335-351 164-180 (343)
190 PF06810 Phage_GP20: Phage min 23.5 2.7E+02 0.0059 23.9 6.3 20 290-309 27-46 (155)
191 PHA03158 hypothetical protein; 23.4 1.8E+02 0.0039 26.2 5.1 40 313-352 231-270 (273)
192 KOG0612|consensus 23.4 9.8E+02 0.021 27.8 11.7 15 223-237 584-598 (1317)
193 PF03961 DUF342: Protein of un 23.3 5.1E+02 0.011 26.2 9.2 28 321-348 381-408 (451)
194 COG1842 PspA Phage shock prote 23.3 5.9E+02 0.013 23.4 11.4 13 259-271 29-41 (225)
195 PF01093 Clusterin: Clusterin; 22.9 4.7E+02 0.01 26.6 8.6 14 295-308 31-44 (436)
196 PF07798 DUF1640: Protein of u 22.9 5.1E+02 0.011 22.5 9.4 8 231-238 4-11 (177)
197 PF09340 NuA4: Histone acetylt 22.8 1.1E+02 0.0023 23.4 3.2 14 338-351 18-31 (80)
198 PF10267 Tmemb_cc2: Predicted 22.7 7.9E+02 0.017 24.7 11.2 18 77-94 114-131 (395)
199 PRK02119 hypothetical protein; 22.7 3.3E+02 0.0072 20.3 7.1 34 318-351 26-59 (73)
200 COG1196 Smc Chromosome segrega 22.6 9.4E+02 0.02 27.7 12.1 23 79-101 543-568 (1163)
201 KOG0977|consensus 22.5 9.2E+02 0.02 25.4 11.3 16 257-272 59-74 (546)
202 TIGR03017 EpsF chain length de 22.4 4.2E+02 0.0091 26.4 8.4 21 254-274 254-274 (444)
203 PF06632 XRCC4: DNA double-str 22.4 7.2E+02 0.016 24.4 9.6 44 141-186 33-77 (342)
204 PF10473 CENP-F_leu_zip: Leuci 22.3 4.9E+02 0.011 22.1 8.7 88 260-348 51-138 (140)
205 KOG2077|consensus 22.3 5.8E+02 0.012 27.0 9.0 9 266-274 275-283 (832)
206 KOG2391|consensus 22.2 5.8E+02 0.012 25.1 8.6 20 251-270 215-234 (365)
207 PRK03918 chromosome segregatio 22.2 1.1E+03 0.023 25.9 12.7 15 82-96 105-119 (880)
208 PF10241 KxDL: Uncharacterized 22.1 3.7E+02 0.0081 20.7 9.4 57 296-352 24-80 (88)
209 KOG0249|consensus 22.1 1E+03 0.022 26.0 11.0 18 253-270 162-179 (916)
210 PF06667 PspB: Phage shock pro 22.0 1.9E+02 0.0041 21.9 4.3 17 336-352 49-65 (75)
211 PLN03184 chloroplast Hsp70; Pr 21.9 7.4E+02 0.016 26.6 10.5 61 292-352 568-634 (673)
212 PRK04406 hypothetical protein; 21.9 3.5E+02 0.0076 20.3 7.4 33 318-350 28-60 (75)
213 KOG3859|consensus 21.9 6.5E+02 0.014 24.4 8.7 22 287-308 327-348 (406)
214 PF10481 CENP-F_N: Cenp-F N-te 21.5 7.2E+02 0.016 23.7 10.5 22 255-276 19-40 (307)
215 PF12999 PRKCSH-like: Glucosid 21.5 5.2E+02 0.011 22.9 7.6 8 144-151 57-65 (176)
216 PF07208 DUF1414: Protein of u 21.4 75 0.0016 21.5 1.8 17 169-185 5-21 (44)
217 KOG0612|consensus 21.3 1.1E+03 0.023 27.5 11.4 18 253-270 464-481 (1317)
218 PRK02224 chromosome segregatio 21.3 1E+03 0.023 26.1 11.9 9 36-44 66-74 (880)
219 KOG0976|consensus 21.3 1.2E+03 0.025 26.1 11.3 57 295-351 97-156 (1265)
220 PF03961 DUF342: Protein of un 21.2 6.2E+02 0.013 25.6 9.4 13 16-28 41-53 (451)
221 PF10146 zf-C4H2: Zinc finger- 21.1 6.6E+02 0.014 23.2 10.2 25 316-340 75-99 (230)
222 PRK09458 pspB phage shock prot 21.0 2.1E+02 0.0045 21.7 4.3 16 337-352 50-65 (75)
223 PF05008 V-SNARE: Vesicle tran 20.9 2.9E+02 0.0062 20.3 5.3 25 312-336 51-75 (79)
224 COG5185 HEC1 Protein involved 20.8 5.8E+02 0.013 26.3 8.6 48 285-333 339-386 (622)
225 PF08647 BRE1: BRE1 E3 ubiquit 20.7 4.2E+02 0.009 20.7 7.4 17 335-351 79-95 (96)
226 KOG0161|consensus 20.6 1.1E+03 0.025 28.8 12.2 36 317-352 1015-1050(1930)
227 TIGR02976 phageshock_pspB phag 20.5 2.1E+02 0.0045 21.6 4.3 16 337-352 50-65 (75)
228 TIGR00414 serS seryl-tRNA synt 20.5 8.2E+02 0.018 24.6 9.9 6 320-325 74-79 (418)
229 PRK02793 phi X174 lysis protei 20.4 3.7E+02 0.008 20.0 6.8 33 319-351 26-58 (72)
230 PF14257 DUF4349: Domain of un 20.4 3.6E+02 0.0077 25.0 6.9 23 209-233 93-115 (262)
231 PF05325 DUF730: Protein of un 20.4 3.1E+02 0.0067 21.8 5.3 24 283-306 71-94 (122)
232 COG1196 Smc Chromosome segrega 20.4 6.6E+02 0.014 28.9 10.2 13 82-94 617-629 (1163)
233 TIGR01005 eps_transp_fam exopo 20.3 4.7E+02 0.01 28.3 8.8 21 254-274 288-308 (754)
234 TIGR03185 DNA_S_dndD DNA sulfu 20.2 7.4E+02 0.016 26.4 10.1 15 85-99 42-56 (650)
235 PF14662 CCDC155: Coiled-coil 20.2 6.4E+02 0.014 22.7 10.3 15 257-271 39-53 (193)
236 KOG3809|consensus 20.2 9.4E+02 0.02 24.6 10.9 33 320-352 544-576 (583)
237 PF05667 DUF812: Protein of un 20.2 8.5E+02 0.018 25.9 10.2 32 321-352 497-528 (594)
238 TIGR01005 eps_transp_fam exopo 20.1 9.8E+02 0.021 25.8 11.2 10 259-268 321-330 (754)
239 PF10174 Cast: RIM-binding pro 20.1 5.9E+02 0.013 28.0 9.2 38 314-351 370-407 (775)
No 1
>KOG4280|consensus
Probab=100.00 E-value=2.6e-82 Score=634.34 Aligned_cols=351 Identities=52% Similarity=0.749 Sum_probs=297.3
Q ss_pred eEEeecCCCCCCCCCCchHHHHHHHHHHhhhcC-CceEEEEEEEEEEEcchhccccCCcccccccceecCCCCeEEcCce
Q psy8840 2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTE-NKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDSGVYVKNLQ 80 (355)
Q Consensus 2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~~-~~~~~v~vS~~EIyne~v~DLL~~~~~~~l~i~e~~~~~~~v~~l~ 80 (355)
|||||+|+ +++.+|||||+|.+||.+|+..+ ...|+|+|||+|||||.|+|||++.+++.+.++++|+.||||+||+
T Consensus 99 KTyTM~G~--~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lre~p~~Gv~V~nls 176 (574)
T KOG4280|consen 99 KTYTMIGP--DPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLELREDPKCGVYVENLS 176 (574)
T ss_pred CceEeeCC--ChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCceeeEcCCCceEecCcc
Confidence 89999999 38899999999999999999987 4579999999999999999999998778999999999999999999
Q ss_pred EEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCCccc
Q psy8840 81 SYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATG 160 (355)
Q Consensus 81 ~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g 160 (355)
++.|.++++++.+|..|..+|++++|.||..|||||+||||+|++.....++. ...+.|+|+|||||||||+.++++.|
T Consensus 177 e~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~-~~~~~~rlnlvDLagsEr~~~tga~G 255 (574)
T KOG4280|consen 177 EMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGL-MSGRSSKLNLVDLAGSERQSKTGAEG 255 (574)
T ss_pred eeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCc-cccccceeeeeeccchhhhcccCccc
Confidence 99999999999999999999999999999999999999999999844333333 56789999999999999999999999
Q ss_pred cchHHHHhhhhhhHHHHHHHHHHhCCCCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHHHHHHHhcc
Q psy8840 161 KRLKEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKN 240 (355)
Q Consensus 161 ~~~~E~~~IN~SL~~L~~vI~aL~~~~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL~fa~rak~ 240 (355)
+|++|+.+||+||++||+||.+|+++++.||||||||||+||||||||||+|+|||||+|+..+++||++||+||+|||.
T Consensus 256 ~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~ 335 (574)
T KOG4280|consen 256 ERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKA 335 (574)
T ss_pred hhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCchHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHhHHHHHHH-HHHHHHHHHHHHHhhccccHHHHHH
Q psy8840 241 IKNQPRVNEDPKEALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNE-EEDKLNNKRKRIMNENHLSDAEKQK 319 (355)
Q Consensus 241 I~n~~~~n~~~~~~~~~~l~~ei~~Lk~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (355)
|+|+|.+|++|+++.+++|++||+.||.+++.........-........+.+.. ....+....+..........++..+
T Consensus 336 I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~ 415 (574)
T KOG4280|consen 336 IKNKPVINEDPKDALLRELQEEIERLKKELDPGGSPGGTDRQEAESGSEENLLKAETVISLDPNEARVADLALETEELEK 415 (574)
T ss_pred hhccccccCCcchhhHHHHHHHHHHHHHhhccccCcCCCCccccccccccchhhccccccccchhhccccccccccchhh
Confidence 999999999999999999999999999999876543322111100000000111 1111111222222233344455556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy8840 320 LLQEVESKQKAIEAEKKYTEELAKRINSMESKLLQG 355 (355)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~g 355 (355)
...+++.....++...++...+..+....+++.++|
T Consensus 416 ~~~e~~k~~~~~~~~~~~~~~l~~~~~~~~s~~~~~ 451 (574)
T KOG4280|consen 416 RLLELQKKNQELEDLRQENEFLARKRPDIESKQLVG 451 (574)
T ss_pred hHHHHHHHhhhhhhccccchhhhhcccchhhhceec
Confidence 666777777777888888899999988888887765
No 2
>KOG0245|consensus
Probab=100.00 E-value=6.6e-79 Score=624.16 Aligned_cols=273 Identities=48% Similarity=0.756 Sum_probs=259.3
Q ss_pred eEEeecCCCCCCCCCCchHHHHHHHHHHhhhcC--CceEEEEEEEEEEEcchhccccC-CcccccccceecCCCCeEEcC
Q psy8840 2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTE--NKQYLIRASYLEIYQEEIRDLLD-KDQSKRYELRENPDSGVYVKN 78 (355)
Q Consensus 2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~~--~~~~~v~vS~~EIyne~v~DLL~-~~~~~~l~i~e~~~~~~~v~~ 78 (355)
|||||+|.. +|++.|||||.|++||.+++... +..|.|.|||+|||||.|+|||+ |.++..|.|||+|-.|+||.+
T Consensus 101 KSYTMMG~~-~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~kg~LRVREHP~lGPYVed 179 (1221)
T KOG0245|consen 101 KSYTMMGFQ-EPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSKGGLRVREHPILGPYVED 179 (1221)
T ss_pred cceeeeccC-CCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCCCCceeeccCccChhHhH
Confidence 899999987 46778999999999999998865 67899999999999999999999 888889999999999999999
Q ss_pred ceEEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCCc
Q psy8840 79 LQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGA 158 (355)
Q Consensus 79 l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~ 158 (355)
|+.+.|+|+.|+..++..|++.|++++|+||..|||||+||+|++.|.....+......++|+|+|||||||||.+.+|+
T Consensus 180 LS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SKIsLVDLAGSERasstGa 259 (1221)
T KOG0245|consen 180 LSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSKISLVDLAGSERASSTGA 259 (1221)
T ss_pred hhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeeeeeEEeccCcccccccCC
Confidence 99999999999999999999999999999999999999999999999988877766678999999999999999999999
Q ss_pred cccchHHHHhhhhhhHHHHHHHHHHhCC------CCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHH
Q psy8840 159 TGKRLKEASKINLSLSALGNVISALVDG------KNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTL 232 (355)
Q Consensus 159 ~g~~~~E~~~IN~SL~~L~~vI~aL~~~------~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL 232 (355)
.|+|++||.+||+||++||.||+||++. ++.+||||||.|||||+++|||||||+|||++||++.||+||||||
T Consensus 260 ~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTL 339 (1221)
T KOG0245|consen 260 NGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTL 339 (1221)
T ss_pred CccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHH
Confidence 9999999999999999999999999873 3359999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCccccccCCCchHHHHHHHHHHHHHHHHHHhhccc
Q psy8840 233 RYANRAKNIKNQPRVNEDPKEALLREYQEEIQRLKNLLNQRTV 275 (355)
Q Consensus 233 ~fa~rak~I~n~~~~n~~~~~~~~~~l~~ei~~Lk~~l~~~~~ 275 (355)
|||.|||.|+|.++||+||...+|++|++|+.+||..|.....
T Consensus 340 RYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll~~~~~ 382 (1221)
T KOG0245|consen 340 RYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLLRAQGL 382 (1221)
T ss_pred HHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999975543
No 3
>KOG0243|consensus
Probab=100.00 E-value=6.9e-76 Score=611.22 Aligned_cols=345 Identities=41% Similarity=0.652 Sum_probs=290.3
Q ss_pred eEEeecCCC-----CCCCCCCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEcchhccccCCccc--ccccceecC----
Q psy8840 2 YKYMIIGSK-----ESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQS--KRYELRENP---- 70 (355)
Q Consensus 2 KTyTm~G~~-----~~~~~~GIipra~~~lF~~i~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~--~~l~i~e~~---- 70 (355)
|||||+|+. ..++..||||||+.+||+.+... +..|+|+|||+|+|||.++|||++... +.+.+..++
T Consensus 142 KTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~-~~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~~~~ 220 (1041)
T KOG0243|consen 142 KTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQ-GAEYSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDSTIVD 220 (1041)
T ss_pred ceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhc-CCeEEEEEEehhhhhHHHHHhcCCccccccccccccCCcccC
Confidence 899999953 35677899999999999999876 489999999999999999999998754 556666555
Q ss_pred -CCCeEEcCceEEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCC
Q psy8840 71 -DSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAG 149 (355)
Q Consensus 71 -~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAG 149 (355)
.+||+|+||.++.|.++.|++++|.+|...|++++|.||..|||||+||+|+|........+. ..+++|||+||||||
T Consensus 221 ~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~ge-elvK~GKLNLVDLAG 299 (1041)
T KOG0243|consen 221 GKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGE-ELVKIGKLNLVDLAG 299 (1041)
T ss_pred CcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcch-hhHhhcccceeeccc
Confidence 579999999999999999999999999999999999999999999999999998766554443 568999999999999
Q ss_pred CccccCCCccccchHHHHhhhhhhHHHHHHHHHHhCCCCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHH
Q psy8840 150 SERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESL 229 (355)
Q Consensus 150 sEr~~~t~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTl 229 (355)
||..+++|+.+.|.+|++.||+||++||+||+||+++.+ |||||+|||||||||||||.+||+|||||||+..+++||+
T Consensus 300 SENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~-HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETl 378 (1041)
T KOG0243|consen 300 SENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSG-HIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETL 378 (1041)
T ss_pred cccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCC-CCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHH
Confidence 999999999999999999999999999999999999655 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCccccccCC-CchHHHHHHHHHHHHHHHHHHhhcccCCCCcccchh--------HhHHHHHHHHHHHHH
Q psy8840 230 TTLRYANRAKNIKNQPRVNE-DPKEALLREYQEEIQRLKNLLNQRTVQPSSKLNDEN--------QTREEYLNEEEDKLN 300 (355)
Q Consensus 230 sTL~fa~rak~I~n~~~~n~-~~~~~~~~~l~~ei~~Lk~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 300 (355)
|||.||.|||+|+|+|.+|+ -.+.++++.|-.||.+||..|.....+.+-.+..+. ....+.+.+++.+++
T Consensus 379 STLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~ 458 (1041)
T KOG0243|consen 379 STLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELE 458 (1041)
T ss_pred HHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 467899999999999999999877776665443322 234456667777777
Q ss_pred HHHHHHHhhcc----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8840 301 NKRKRIMNENH----------LSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSME 349 (355)
Q Consensus 301 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e 349 (355)
+.++.+..... ...+++.++...|+....+++..+.+..++...++..|
T Consensus 459 ~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e 517 (1041)
T KOG0243|consen 459 NLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEE 517 (1041)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777765322 23344455555555555566555555555555544433
No 4
>KOG0240|consensus
Probab=100.00 E-value=3e-69 Score=528.50 Aligned_cols=254 Identities=48% Similarity=0.718 Sum_probs=238.8
Q ss_pred eEEeecCCCCCCCCCCchHHHHHHHHHHhhhcC-CceEEEEEEEEEEEcchhccccCCcccccccceecCCCCeEEcCce
Q psy8840 2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTE-NKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDSGVYVKNLQ 80 (355)
Q Consensus 2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~~-~~~~~v~vS~~EIyne~v~DLL~~~~~~~l~i~e~~~~~~~v~~l~ 80 (355)
|||||.|...++...|||||++++||.+|...+ +..|.|.|||+|||+|+++|||++. ..++.+++|...+++|+|++
T Consensus 96 KTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~-k~nlsvheDK~~v~~vkG~t 174 (607)
T KOG0240|consen 96 KTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPE-KTNLSVHEDKNRVPYVKGVT 174 (607)
T ss_pred cceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcc-cCCceeecccCCCceecCce
Confidence 899999999999999999999999999998876 6799999999999999999999986 67899999999999999999
Q ss_pred EEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCCccc
Q psy8840 81 SYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATG 160 (355)
Q Consensus 81 ~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g 160 (355)
+..|.++++++.++..|..+|+++.|.||.+|||||+||+|+|.|.+... ..++.|+|.||||||||+.+++|+.|
T Consensus 175 ~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~----~~~~~gkLyLVDLaGSEkvsKtga~g 250 (607)
T KOG0240|consen 175 ERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED----KRKLSGKLYLVDLAGSEKVSKTGAEG 250 (607)
T ss_pred eEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccc----hhhccccEEEEEcccccccCCCCccc
Confidence 99999999999999999999999999999999999999999999877643 34688999999999999999999999
Q ss_pred cchHHHHhhhhhhHHHHHHHHHHhCCCCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHHHHHHHhcc
Q psy8840 161 KRLKEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKN 240 (355)
Q Consensus 161 ~~~~E~~~IN~SL~~L~~vI~aL~~~~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL~fa~rak~ 240 (355)
.-+.|+++||+||+|||+||+||+++.+.|||||||||||+|+|+|||||+|.+|+|++|+..+..||.+||+|+.||+.
T Consensus 251 ~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ 330 (607)
T KOG0240|consen 251 AVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKT 330 (607)
T ss_pred hhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhcccccc
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCch-HHHHHHHH
Q psy8840 241 IKNQPRVNEDPK-EALLREYQ 260 (355)
Q Consensus 241 I~n~~~~n~~~~-~~~~~~l~ 260 (355)
|+|.+.+|.... ++..+.|+
T Consensus 331 ikN~v~~n~e~~~e~~~r~~e 351 (607)
T KOG0240|consen 331 IKNTVWVNLELTAEEWKRKLE 351 (607)
T ss_pred ccchhhhhhHhhHHHHHHHHH
Confidence 999999998643 34444444
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=2.6e-68 Score=559.77 Aligned_cols=268 Identities=45% Similarity=0.704 Sum_probs=241.6
Q ss_pred eEEeecCCCC-------CCCCCCchHHHHHHHHHHhhhc------CCceEEEEEEEEEEEcchhccccCCccccccccee
Q psy8840 2 YKYMIIGSKE-------SAESKGVIPNSFDQIFSHIART------ENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRE 68 (355)
Q Consensus 2 KTyTm~G~~~-------~~~~~GIipra~~~lF~~i~~~------~~~~~~v~vS~~EIyne~v~DLL~~~~~~~l~i~e 68 (355)
|||||+|+.. +...+|||||++++||..+... ....|.|+|||+|||||+|+|||++. ...+.|++
T Consensus 179 KTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~-~k~L~IRE 257 (1320)
T PLN03188 179 KTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPS-QKNLQIRE 257 (1320)
T ss_pred CCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccccc-cCCceEEE
Confidence 8999999753 3467899999999999998753 24579999999999999999999886 46799999
Q ss_pred cCCCCeEEcCceEEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCC
Q psy8840 69 NPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLA 148 (355)
Q Consensus 69 ~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLA 148 (355)
|+.+|++|.||+++.|.|++|+.++|..|..+|++++|.+|..|||||+||+|+|++...........+..|+|+|||||
T Consensus 258 D~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~SkLnLVDLA 337 (1320)
T PLN03188 258 DVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLA 337 (1320)
T ss_pred cCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999998765443333355788999999999
Q ss_pred CCccccCCCccccchHHHHhhhhhhHHHHHHHHHHhC----CCCCcccCCCCcccccccccCCCCceEEEEEecCCCCCC
Q psy8840 149 GSERQSKTGATGKRLKEASKINLSLSALGNVISALVD----GKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYN 224 (355)
Q Consensus 149 GsEr~~~t~~~g~~~~E~~~IN~SL~~L~~vI~aL~~----~~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~ 224 (355)
||||..++++.|.+++|+++||+||++||+||.+|+. ++..||||||||||+||+|+|||||+|+|||||||+..+
T Consensus 338 GSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~ 417 (1320)
T PLN03188 338 GSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSC 417 (1320)
T ss_pred CchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhh
Confidence 9999999999999999999999999999999999985 345699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCccccccCCCch------HHHHHHHHHHHHHHHHHH
Q psy8840 225 YEESLTTLRYANRAKNIKNQPRVNEDPK------EALLREYQEEIQRLKNLL 270 (355)
Q Consensus 225 ~~eTlsTL~fa~rak~I~n~~~~n~~~~------~~~~~~l~~ei~~Lk~~l 270 (355)
++||++||+||+||++|+|+|.+|+... ..+|++|+.|+.+||...
T Consensus 418 ~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~ 469 (1320)
T PLN03188 418 KSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKANG 469 (1320)
T ss_pred HHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998643 346777888888887764
No 6
>KOG0242|consensus
Probab=100.00 E-value=1.7e-68 Score=552.71 Aligned_cols=267 Identities=48% Similarity=0.735 Sum_probs=248.5
Q ss_pred eEEeecCCCCCCCCCCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEcchhccccCCcccccccceecCCCCeEEcCceE
Q psy8840 2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDSGVYVKNLQS 81 (355)
Q Consensus 2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~~l~i~e~~~~~~~v~~l~~ 81 (355)
|||||.|..++| ||||+++.+||+.|....++.|.|.|||+|||||.|+|||+++ ...+.+++|+.+|++|.||++
T Consensus 100 KTyTM~G~~~~P---Gii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~-~~~L~irED~~~gi~V~gL~e 175 (675)
T KOG0242|consen 100 KTYTMSGSEDDP---GIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPD-GGDLRLREDSEGGIVVPGLTE 175 (675)
T ss_pred CceEEeccCCCC---CeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCC-CCCceEeEcCCCCEEecCCee
Confidence 899999998887 9999999999999999999999999999999999999999987 456999999999999999999
Q ss_pred EEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCCcccc
Q psy8840 82 YICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGK 161 (355)
Q Consensus 82 ~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~ 161 (355)
+.|.|++++.++|..|+.+|+++.|.+|..|||||+||+|+|.+.....+ . +.|+|+|||||||||+.+|++.|.
T Consensus 176 ~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~----~-~~s~L~lIDLAGSERas~T~~~G~ 250 (675)
T KOG0242|consen 176 ETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS----S-RVSKLNLIDLAGSERASRTGNEGV 250 (675)
T ss_pred ecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc----c-hhheehhhhhhhhhhhhhhhccce
Confidence 99999999999999999999999999999999999999999998765443 1 778999999999999999999999
Q ss_pred chHHHHhhhhhhHHHHHHHHHHhCC-CCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHHHHHHHhcc
Q psy8840 162 RLKEASKINLSLSALGNVISALVDG-KNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKN 240 (355)
Q Consensus 162 ~~~E~~~IN~SL~~L~~vI~aL~~~-~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL~fa~rak~ 240 (355)
|++||.+||+||++||+||.+|+++ ...||||||||||||||++|||||+|+|||||+|+..+|+||.+||.||+||++
T Consensus 251 RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~ 330 (675)
T KOG0242|consen 251 RLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKE 330 (675)
T ss_pred eccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999998 456899999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCchH-HHHHHHHHHHHHHHHHHhhcccCC
Q psy8840 241 IKNQPRVNEDPKE-ALLREYQEEIQRLKNLLNQRTVQP 277 (355)
Q Consensus 241 I~n~~~~n~~~~~-~~~~~l~~ei~~Lk~~l~~~~~~~ 277 (355)
|++++.+|....+ .++..++.++..|+.++.......
T Consensus 331 i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~ 368 (675)
T KOG0242|consen 331 ITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKL 368 (675)
T ss_pred cccccccceecchhhhhHHHHHHHHHHHHHHHhhcccc
Confidence 9999999986654 455566799999999997655444
No 7
>KOG0241|consensus
Probab=100.00 E-value=2.4e-68 Score=538.96 Aligned_cols=270 Identities=49% Similarity=0.759 Sum_probs=255.4
Q ss_pred eEEeecCCCCCCCCCCchHHHHHHHHHHhhhcC--CceEEEEEEEEEEEcchhccccCCcc-cccccceecCCCCeEEcC
Q psy8840 2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTE--NKQYLIRASYLEIYQEEIRDLLDKDQ-SKRYELRENPDSGVYVKN 78 (355)
Q Consensus 2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~~--~~~~~v~vS~~EIyne~v~DLL~~~~-~~~l~i~e~~~~~~~v~~ 78 (355)
|||||+|..+.| |||||.|..||..|+..+ +..|.|.|||+|||||++||||+|.. ++.+.++++.-.|+||.|
T Consensus 107 KsYsmmGt~~Qp---GiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk~ssqtlkVrehsvlGp~vdG 183 (1714)
T KOG0241|consen 107 KSYSMMGTAEQP---GIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPKGSSQTLKVREHSVLGPYVDG 183 (1714)
T ss_pred ceeEeeccCCCC---CchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCCCCcceeEEeecccccccccc
Confidence 899999987777 999999999999998865 77899999999999999999999874 567999999999999999
Q ss_pred ceEEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCCc
Q psy8840 79 LQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGA 158 (355)
Q Consensus 79 l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~ 158 (355)
|++..|.|++|+-.++..|+++|++++|+||..|||||++|.|.|.+.-.+.....+..++|+|.+||||||||.+++++
T Consensus 184 LS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~SgeKvsklslVDLAgserasktga 263 (1714)
T KOG0241|consen 184 LSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGEKVSKLSLVDLAGSERASKTGA 263 (1714)
T ss_pred hhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchhheeeeeEEEeccccccccccc
Confidence 99999999999999999999999999999999999999999999999887777666777899999999999999999999
Q ss_pred cccchHHHHhhhhhhHHHHHHHHHHhCC-----CCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHHH
Q psy8840 159 TGKRLKEASKINLSLSALGNVISALVDG-----KNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLR 233 (355)
Q Consensus 159 ~g~~~~E~~~IN~SL~~L~~vI~aL~~~-----~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL~ 233 (355)
.|.|++||.+||+||++||.||+||++. +..+||||||.||+||+|+|||||+|+||+||||+..+|+||++|||
T Consensus 264 ~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLR 343 (1714)
T KOG0241|consen 264 AGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLR 343 (1714)
T ss_pred hhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHH
Confidence 9999999999999999999999999873 34599999999999999999999999999999999999999999999
Q ss_pred HHHHhccCccccccCCCchHHHHHHHHHHHHHHHHHHhhcc
Q psy8840 234 YANRAKNIKNQPRVNEDPKEALLREYQEEIQRLKNLLNQRT 274 (355)
Q Consensus 234 fa~rak~I~n~~~~n~~~~~~~~~~l~~ei~~Lk~~l~~~~ 274 (355)
||.|||+|+|++.+|++|....++++++|+..|+.+|.+..
T Consensus 344 YadrAkrIvN~avvNedpnarvirElReEve~lr~qL~~ae 384 (1714)
T KOG0241|consen 344 YADRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQAE 384 (1714)
T ss_pred HHHHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999997633
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=3.1e-65 Score=495.53 Aligned_cols=237 Identities=52% Similarity=0.781 Sum_probs=217.8
Q ss_pred eEEeecCCCCC-----CCCCCchHHHHHHHHHHhhhc-----CCceEEEEEEEEEEEcchhccccCCcccccccceecCC
Q psy8840 2 YKYMIIGSKES-----AESKGVIPNSFDQIFSHIART-----ENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPD 71 (355)
Q Consensus 2 KTyTm~G~~~~-----~~~~GIipra~~~lF~~i~~~-----~~~~~~v~vS~~EIyne~v~DLL~~~~~~~l~i~e~~~ 71 (355)
|||||+|+... ...+|||||++++||..+... .+..|.|++||+|||||+|+|||++. ...+.+++++.
T Consensus 88 KTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~-~~~l~i~e~~~ 166 (337)
T cd01373 88 KTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPT-SRNLKIREDIK 166 (337)
T ss_pred ceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCC-CCCceEEECCC
Confidence 89999998753 247899999999999988754 35689999999999999999999876 46799999999
Q ss_pred CCeEEcCceEEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCc
Q psy8840 72 SGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSE 151 (355)
Q Consensus 72 ~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsE 151 (355)
++++|.|++++.|.|++|++++|..|..+|++++|.+|..|||||+||+|+|.+....... ...+.|+|+||||||||
T Consensus 167 ~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~--~~~~~s~l~~VDLAGSE 244 (337)
T cd01373 167 KGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASS--TNIRTSRLNLVDLAGSE 244 (337)
T ss_pred CCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCC--CcEEEEEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999999876543222 35678999999999999
Q ss_pred cccCCCccccchHHHHhhhhhhHHHHHHHHHHhC---CCCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHH
Q psy8840 152 RQSKTGATGKRLKEASKINLSLSALGNVISALVD---GKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEES 228 (355)
Q Consensus 152 r~~~t~~~g~~~~E~~~IN~SL~~L~~vI~aL~~---~~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eT 228 (355)
|..++++.|.+++|+.+||+||++|++||.+|++ ++..||||||||||+||+|+|||||+|+|||||||+..+++||
T Consensus 245 r~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eT 324 (337)
T cd01373 245 RQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGET 324 (337)
T ss_pred cccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHH
Confidence 9999999999999999999999999999999985 3457999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccC
Q psy8840 229 LTTLRYANRAKNI 241 (355)
Q Consensus 229 lsTL~fa~rak~I 241 (355)
++||+||.|||+|
T Consensus 325 l~TL~fa~rak~I 337 (337)
T cd01373 325 LSTLKFAQRAKLI 337 (337)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999987
No 9
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=7.6e-65 Score=492.95 Aligned_cols=235 Identities=51% Similarity=0.770 Sum_probs=221.2
Q ss_pred eEEeecCCCCCCCCCCchHHHHHHHHHHhhhcC-CceEEEEEEEEEEEcchhccccCCcccccccceecCCCCeEEcCce
Q psy8840 2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTE-NKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDSGVYVKNLQ 80 (355)
Q Consensus 2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~~-~~~~~v~vS~~EIyne~v~DLL~~~~~~~l~i~e~~~~~~~v~~l~ 80 (355)
|||||+|+..++ |||||++++||+.++... +..|.|++||+|||||+|+|||++. .+++.+++|++++++|.|++
T Consensus 101 KTyTm~G~~~~~---Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~-~~~l~i~ed~~~~~~v~gl~ 176 (338)
T cd01370 101 KTHTMLGTDSDP---GLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPS-SGPLELREDPNQGIVVAGLT 176 (338)
T ss_pred CeEEEcCCCCCC---chHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCC-CCCceEEEcCCCCEEeCCcE
Confidence 899999987555 999999999999998876 7899999999999999999999886 67899999999999999999
Q ss_pred EEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCCccc
Q psy8840 81 SYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATG 160 (355)
Q Consensus 81 ~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g 160 (355)
++.|.|++|++++|..|..+|++++|.+|..|||||+||+|+|.+.+...+.. .....|+|+|||||||||..++++.|
T Consensus 177 ~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~-~~~~~s~l~~VDLAGsEr~~~~~~~g 255 (338)
T cd01370 177 EHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASIN-QQVRIGKLSLIDLAGSERASATNNRG 255 (338)
T ss_pred EEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCC-CcEEEEEEEEEECCCCccccccCCCC
Confidence 99999999999999999999999999999999999999999999877653222 45788999999999999999999999
Q ss_pred cchHHHHhhhhhhHHHHHHHHHHhCCCC--CcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHHHHHHHh
Q psy8840 161 KRLKEASKINLSLSALGNVISALVDGKN--IHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRA 238 (355)
Q Consensus 161 ~~~~E~~~IN~SL~~L~~vI~aL~~~~~--~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL~fa~ra 238 (355)
.+++|+.+||+||++|++||.+|+.++. .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||
T Consensus 256 ~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra 335 (338)
T cd01370 256 QRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRA 335 (338)
T ss_pred ccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999998763 79999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy8840 239 KNI 241 (355)
Q Consensus 239 k~I 241 (355)
|+|
T Consensus 336 ~~I 338 (338)
T cd01370 336 KNI 338 (338)
T ss_pred ccC
Confidence 986
No 10
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=2.8e-63 Score=485.36 Aligned_cols=244 Identities=48% Similarity=0.776 Sum_probs=227.0
Q ss_pred eEEeecCCCCCCCCCCchHHHHHHHHHHhhhcC--CceEEEEEEEEEEEcchhccccCCcc--cccccceecCCCCeEEc
Q psy8840 2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTE--NKQYLIRASYLEIYQEEIRDLLDKDQ--SKRYELRENPDSGVYVK 77 (355)
Q Consensus 2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~~--~~~~~v~vS~~EIyne~v~DLL~~~~--~~~l~i~e~~~~~~~v~ 77 (355)
|||||+|+..++ |||||++++||+.+.... ...|.|+|||+|||||+|+|||++.. ...+.+++++.++++|.
T Consensus 102 KT~Tm~G~~~~~---Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~g~~v~ 178 (356)
T cd01365 102 KSYTMMGYKEEK---GIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKKNKGNLKVREHPVLGPYVE 178 (356)
T ss_pred CeEEecCCCCCC---chHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCccCCcCceEEECCCCCEEeC
Confidence 899999987655 999999999999998765 46899999999999999999998863 46799999999999999
Q ss_pred CceEEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCC
Q psy8840 78 NLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTG 157 (355)
Q Consensus 78 ~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~ 157 (355)
|++++.|.|++|+..++..|.++|.+++|.+|..|||||+||+|+|.+..............|+|+|||||||||..+++
T Consensus 179 gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~ 258 (356)
T cd01365 179 DLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKISLVDLAGSERASSTG 258 (356)
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEEEEEEeeeccccccccccc
Confidence 99999999999999999999999999999999999999999999999876654333456789999999999999999999
Q ss_pred ccccchHHHHhhhhhhHHHHHHHHHHhCC-------CCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHH
Q psy8840 158 ATGKRLKEASKINLSLSALGNVISALVDG-------KNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLT 230 (355)
Q Consensus 158 ~~g~~~~E~~~IN~SL~~L~~vI~aL~~~-------~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTls 230 (355)
..|.+++|+..||+||++|++||.+|+.+ +..||||||||||+||+|+|||||+|+||+||+|...+++||++
T Consensus 259 ~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~ 338 (356)
T cd01365 259 AEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLS 338 (356)
T ss_pred ccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHH
Confidence 99999999999999999999999999874 35799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCccccccC
Q psy8840 231 TLRYANRAKNIKNQPRVN 248 (355)
Q Consensus 231 TL~fa~rak~I~n~~~~n 248 (355)
||+||++|++|+|.|++|
T Consensus 339 tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 339 TLRYADRAKKIVNVAVVN 356 (356)
T ss_pred HHHHHHHHhhccCccccC
Confidence 999999999999999886
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=2.8e-63 Score=483.07 Aligned_cols=230 Identities=40% Similarity=0.655 Sum_probs=212.8
Q ss_pred eEEeecCCCCCCCCCCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEcchhccccCCcc-----cccccceecCCCCeEE
Q psy8840 2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQ-----SKRYELRENPDSGVYV 76 (355)
Q Consensus 2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~~~~~~~v~vS~~EIyne~v~DLL~~~~-----~~~l~i~e~~~~~~~v 76 (355)
|||||+|++..+ |||||++++||+.+.. |.|+|||+|||||+|+|||++.. .+++.+++|++++++|
T Consensus 102 KTyTm~G~~~~~---Gli~r~~~~lF~~~~~-----~~v~~S~~EIyne~v~DLL~~~~~~~~~~~~l~i~ed~~~~~~i 173 (345)
T cd01368 102 KTYTMQGSPGDG---GILPRSLDVIFNSIGG-----YSVFVSYVEIYNNYIYDLLEDSPSSTKKRQSLRLREDHNGNMYV 173 (345)
T ss_pred CeEEecCCCCCC---chHHHHHHHHHHHHHh-----eeEEEEEEEEeCCEeEeCCCCccccccCCCceEEEECCCCCEEe
Confidence 899999987544 9999999999999876 99999999999999999998753 2479999999999999
Q ss_pred cCceEEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCC----CCceEEEEEEEeecCCCCcc
Q psy8840 77 KNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDS----SMSQVRVGKLNLVDLAGSER 152 (355)
Q Consensus 77 ~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~----~~~~~~~s~L~~VDLAGsEr 152 (355)
.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+......+ ....+..|+|+|||||||||
T Consensus 174 ~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr 253 (345)
T cd01368 174 AGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSER 253 (345)
T ss_pred cCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCceEEEEEEEEecccccc
Confidence 99999999999999999999999999999999999999999999999887654322 12457889999999999999
Q ss_pred ccCCCccccchHHHHhhhhhhHHHHHHHHHHhCC-----CCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHH
Q psy8840 153 QSKTGATGKRLKEASKINLSLSALGNVISALVDG-----KNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEE 227 (355)
Q Consensus 153 ~~~t~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~-----~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~e 227 (355)
..++++.|.+++|+..||+||++|++||.+|++. +..||||||||||+||+|+|||||+|+||+||||+..+++|
T Consensus 254 ~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~e 333 (345)
T cd01368 254 TSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDE 333 (345)
T ss_pred cccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHH
Confidence 9999999999999999999999999999999873 45799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q psy8840 228 SLTTLRYANRAK 239 (355)
Q Consensus 228 TlsTL~fa~rak 239 (355)
|++||+||.+|+
T Consensus 334 Tl~tL~fa~~a~ 345 (345)
T cd01368 334 TLHVMKFSAIAQ 345 (345)
T ss_pred HHHHHHHHHhcC
Confidence 999999999985
No 12
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=4.9e-63 Score=483.10 Aligned_cols=246 Identities=46% Similarity=0.737 Sum_probs=228.7
Q ss_pred eEEeecCCCCC--------CCCCCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEcchhccccCCcc--cccccceec--
Q psy8840 2 YKYMIIGSKES--------AESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQ--SKRYELREN-- 69 (355)
Q Consensus 2 KTyTm~G~~~~--------~~~~GIipra~~~lF~~i~~~~~~~~~v~vS~~EIyne~v~DLL~~~~--~~~l~i~e~-- 69 (355)
|||||+|+... ++.+|||||++++||+.+... +..|.|+|||+|||||+|+|||++.. .+++.++++
T Consensus 95 KTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~ 173 (352)
T cd01364 95 KTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ-NTEYSVKVSYLELYNEELFDLLSSESDLNKPLRIFDDTN 173 (352)
T ss_pred CcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc-cceeEEEEEEEEeeCCeeeeCCCCccccCccceEEeccC
Confidence 89999998654 567899999999999999876 77899999999999999999999864 678999999
Q ss_pred CCCCeEEcCceEEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCC
Q psy8840 70 PDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAG 149 (355)
Q Consensus 70 ~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAG 149 (355)
+.+|++|.|++++.|.|++|+..++..|.++|.+++|.+|..|||||+||+|+|.+......+. ..+..|+|+||||||
T Consensus 174 ~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~-~~~~~s~l~~VDLAG 252 (352)
T cd01364 174 NKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGE-ELVKIGKLNLVDLAG 252 (352)
T ss_pred cCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCC-ccEEEEEEEEEECCC
Confidence 5899999999999999999999999999999999999999999999999999998876543332 456789999999999
Q ss_pred CccccCCCccccchHHHHhhhhhhHHHHHHHHHHhCCCCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHH
Q psy8840 150 SERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESL 229 (355)
Q Consensus 150 sEr~~~t~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTl 229 (355)
|||..++++.+.+++|+..||+||++|++||.+|+.+. .|||||+||||+||+|+|||||+|+||+||||+..+++||+
T Consensus 253 sE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~-~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl 331 (352)
T cd01364 253 SENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS-PHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETL 331 (352)
T ss_pred ccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHH
Confidence 99999999999999999999999999999999999865 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCccccccCCC
Q psy8840 230 TTLRYANRAKNIKNQPRVNED 250 (355)
Q Consensus 230 sTL~fa~rak~I~n~~~~n~~ 250 (355)
+||+||++|++|+|+|.+|.+
T Consensus 332 ~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 332 STLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred HHHHHHHHHhhccCccccCCC
Confidence 999999999999999999974
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=4.3e-63 Score=480.02 Aligned_cols=239 Identities=70% Similarity=1.062 Sum_probs=227.0
Q ss_pred eEEeecCCCCCCCCCCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEcchhccccCCcccccccceecCCCCeEEcCceE
Q psy8840 2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDSGVYVKNLQS 81 (355)
Q Consensus 2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~~l~i~e~~~~~~~v~~l~~ 81 (355)
|||||+|+..++..+|||||++++||..+...++..|.|+|||+|||||+|+|||++...+.+.+++++.++++|.|+++
T Consensus 95 KTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~~~~~~~~~v~~l~~ 174 (333)
T cd01371 95 KTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELKERPDRGVYVKDLSM 174 (333)
T ss_pred CcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEEEcCCCCEEeCCCEE
Confidence 89999999887778899999999999999988888999999999999999999999876678999999999999999999
Q ss_pred EEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCCcccc
Q psy8840 82 YICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGK 161 (355)
Q Consensus 82 ~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~ 161 (355)
+.|.|++|+..++..|.++|.+++|.+|..|||||+||+|+|++.+....+. ..+..|+|+|||||||||..+++..|.
T Consensus 175 ~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~-~~~~~s~L~~VDLAGsEr~~~~~~~~~ 253 (333)
T cd01371 175 FVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGE-NHIRVGKLNLVDLAGSERQSKTGATGD 253 (333)
T ss_pred EEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCC-CcEEEEEEEEEECCCCCcccccCCchh
Confidence 9999999999999999999999999999999999999999999877654333 467889999999999999999999999
Q ss_pred chHHHHhhhhhhHHHHHHHHHHhCCCCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHHHHHHHhccC
Q psy8840 162 RLKEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNI 241 (355)
Q Consensus 162 ~~~E~~~IN~SL~~L~~vI~aL~~~~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL~fa~rak~I 241 (355)
+++|+..||+||++|++||.+|++++..||||||||||+||+|+|||||+|+||+||+|...+++||++||+||+|||+|
T Consensus 254 ~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 254 RLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred hhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999988789999999999999999999999999999999999999999999999999986
No 14
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=9.7e-62 Score=470.61 Aligned_cols=236 Identities=45% Similarity=0.651 Sum_probs=222.2
Q ss_pred eEEeecCCCCCCCCCCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEcchhccccCCcc-----cccccceecCCCCeEE
Q psy8840 2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQ-----SKRYELRENPDSGVYV 76 (355)
Q Consensus 2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~~~~~~~v~vS~~EIyne~v~DLL~~~~-----~~~l~i~e~~~~~~~v 76 (355)
|||||+|+..+..++|||||++++||..++..++..|.|++||+|||||+|+|||++.. .+.+.+++++.++++|
T Consensus 94 KTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~~~~l~i~e~~~~~~~v 173 (334)
T cd01375 94 KTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEALESLPAVTILEDSEQNIHV 173 (334)
T ss_pred CeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccccccCCceEEEEcCCCCEEe
Confidence 89999998876678899999999999999998888999999999999999999999873 4678999999999999
Q ss_pred cCceEEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCC
Q psy8840 77 KNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKT 156 (355)
Q Consensus 77 ~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t 156 (355)
.|++++.|.+++|++.++..|..+|.+++|.+|..|||||+||+|+|.+....... ..+..|+|+|||||||||..++
T Consensus 174 ~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~--~~~~~s~l~~VDLAGsEr~~~~ 251 (334)
T cd01375 174 KGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGS--EVVRLSKLNLVDLAGSERVSKT 251 (334)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCC--CceEEEEEEEEECCCCCccccc
Confidence 99999999999999999999999999999999999999999999999987544333 4578899999999999999999
Q ss_pred CccccchHHHHhhhhhhHHHHHHHHHHhCCCCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHHHHHH
Q psy8840 157 GATGKRLKEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYAN 236 (355)
Q Consensus 157 ~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL~fa~ 236 (355)
++.+..++|+..||+||++|++||.+|+.++..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+
T Consensus 252 ~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~ 331 (334)
T cd01375 252 GVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQ 331 (334)
T ss_pred cCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999876799999999999999999999999999999999999999999999999
Q ss_pred Hhc
Q psy8840 237 RAK 239 (355)
Q Consensus 237 rak 239 (355)
|++
T Consensus 332 r~~ 334 (334)
T cd01375 332 RVA 334 (334)
T ss_pred hcC
Confidence 985
No 15
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=5.6e-61 Score=463.91 Aligned_cols=235 Identities=52% Similarity=0.811 Sum_probs=221.4
Q ss_pred eEEeecCCCCCCCCCCchHHHHHHHHHHhhhcC-CceEEEEEEEEEEEcchhccccCCcccccccceecCCCCeEEcCce
Q psy8840 2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTE-NKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDSGVYVKNLQ 80 (355)
Q Consensus 2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~~-~~~~~v~vS~~EIyne~v~DLL~~~~~~~l~i~e~~~~~~~v~~l~ 80 (355)
|||||+|+...+.+.|||||++++||+.+.... +..|.|++||+|||||.|+|||++. ...+.+++++.+++++.|++
T Consensus 90 KT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~-~~~l~i~~~~~~~~~v~gl~ 168 (325)
T cd01369 90 KTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVS-KDNLQVHEDKNRGVYVKGLT 168 (325)
T ss_pred ceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCc-cCCceEEEcCCCCEEEcCCE
Confidence 899999998877788999999999999997764 5689999999999999999999876 56799999999999999999
Q ss_pred EEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCCccc
Q psy8840 81 SYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATG 160 (355)
Q Consensus 81 ~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g 160 (355)
++.|.|++|+..++..|.++|++++|.+|..|||||+||+|+|.+.+... .....|+|+|||||||||..++++.|
T Consensus 169 ~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~----~~~~~s~l~~VDLAGsE~~~~~~~~~ 244 (325)
T cd01369 169 ERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVET----GSKKRGKLFLVDLAGSEKVSKTGAEG 244 (325)
T ss_pred EEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCC----CCEEEEEEEEEECCCCCcccccCCcc
Confidence 99999999999999999999999999999999999999999998765432 34578999999999999999999999
Q ss_pred cchHHHHhhhhhhHHHHHHHHHHhCCCCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHHHHHHHhcc
Q psy8840 161 KRLKEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKN 240 (355)
Q Consensus 161 ~~~~E~~~IN~SL~~L~~vI~aL~~~~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL~fa~rak~ 240 (355)
.+++|+..||+||++|++||.+|++++..|||||||+||+||+|+|||||+|+||+||||+..+++||++||+||+|||+
T Consensus 245 ~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~ 324 (325)
T cd01369 245 QTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKT 324 (325)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999998867999999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy8840 241 I 241 (355)
Q Consensus 241 I 241 (355)
|
T Consensus 325 i 325 (325)
T cd01369 325 I 325 (325)
T ss_pred C
Confidence 6
No 16
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=5.2e-61 Score=463.33 Aligned_cols=234 Identities=47% Similarity=0.760 Sum_probs=220.0
Q ss_pred eEEeecCCCCCCCCCCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEcchhccccCCcccccccceecCCCCeEEcCceE
Q psy8840 2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDSGVYVKNLQS 81 (355)
Q Consensus 2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~~l~i~e~~~~~~~v~~l~~ 81 (355)
|||||+|+..++ |||||++++||..+...++..|.|++||+|||||+|+|||++. ...+.+++++.+++++.|+++
T Consensus 87 KT~T~~G~~~~~---Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~-~~~l~i~~~~~~~~~v~gl~~ 162 (321)
T cd01374 87 KTFTMSGDEQEP---GIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPS-PQELRIREDPNKGVVVAGLTE 162 (321)
T ss_pred CceeccCCCCCC---chHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCC-CCCceEEECCCCCEEeCCceE
Confidence 899999987555 9999999999999988888999999999999999999999986 378999999999999999999
Q ss_pred EEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCCcccc
Q psy8840 82 YICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGK 161 (355)
Q Consensus 82 ~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~ 161 (355)
+.|.|++|+..+|..|.++|+.++|.+|..|||||+||+|+|.+.....+. ...+..|+|+|||||||||..+.+ .+.
T Consensus 163 ~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~-~~~~~~s~l~~vDLAGsE~~~~~~-~~~ 240 (321)
T cd01374 163 EIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSE-SGTVRVSTLNLIDLAGSERASQTG-AGE 240 (321)
T ss_pred EEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCC-CCcEEEEEEEEEECCCCCccccCC-CCc
Confidence 999999999999999999999999999999999999999999987755432 245788999999999999999998 899
Q ss_pred chHHHHhhhhhhHHHHHHHHHHhCCC-CCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHHHHHHHhcc
Q psy8840 162 RLKEASKINLSLSALGNVISALVDGK-NIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKN 240 (355)
Q Consensus 162 ~~~E~~~IN~SL~~L~~vI~aL~~~~-~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL~fa~rak~ 240 (355)
+++|+.+||+||++|++||.+|+.++ ..||||||||||+||+|+|||||+|+||+||||...+++||++||+||+||++
T Consensus 241 ~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~ 320 (321)
T cd01374 241 RRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKK 320 (321)
T ss_pred cccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999976 56999999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy8840 241 I 241 (355)
Q Consensus 241 I 241 (355)
|
T Consensus 321 i 321 (321)
T cd01374 321 V 321 (321)
T ss_pred C
Confidence 6
No 17
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=8.5e-61 Score=465.51 Aligned_cols=241 Identities=47% Similarity=0.719 Sum_probs=223.3
Q ss_pred eEEeecCCCC---CCCCCCchHHHHHHHHHHhhhcCC-ceEEEEEEEEEEEcchhccccCCcc--cccccceecCCCCeE
Q psy8840 2 YKYMIIGSKE---SAESKGVIPNSFDQIFSHIARTEN-KQYLIRASYLEIYQEEIRDLLDKDQ--SKRYELRENPDSGVY 75 (355)
Q Consensus 2 KTyTm~G~~~---~~~~~GIipra~~~lF~~i~~~~~-~~~~v~vS~~EIyne~v~DLL~~~~--~~~l~i~e~~~~~~~ 75 (355)
|||||+|+.. ...++|||||++++||..+..... ..|.|.|||+|||||.|+|||.+.. ...+.+++++.++++
T Consensus 87 KT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~~ 166 (341)
T cd01372 87 KTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIREDSKGNII 166 (341)
T ss_pred CcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCceEEECCCCCEe
Confidence 8999999864 356789999999999999988764 7999999999999999999999864 678999999999999
Q ss_pred EcCceEEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCC------CCCceEEEEEEEeecCCC
Q psy8840 76 VKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVRED------SSMSQVRVGKLNLVDLAG 149 (355)
Q Consensus 76 v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~------~~~~~~~~s~L~~VDLAG 149 (355)
|.|++++.|.|++|++.++..|..+|..++|.+|..|||||+||+|+|.+...... ........|+|+||||||
T Consensus 167 i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAG 246 (341)
T cd01372 167 IVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAG 246 (341)
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999998876411 122456889999999999
Q ss_pred CccccCCCccccchHHHHhhhhhhHHHHHHHHHHhCCCC--CcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHH
Q psy8840 150 SERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKN--IHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEE 227 (355)
Q Consensus 150 sEr~~~t~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~--~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~e 227 (355)
||+..++++.|.+++|+..||+||++|++||.+|+.++. .||||||||||+||+|+||||++|+||+||||...+++|
T Consensus 247 sE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~e 326 (341)
T cd01372 247 SERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEE 326 (341)
T ss_pred CcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCChhhHHH
Confidence 999999999999999999999999999999999998763 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCc
Q psy8840 228 SLTTLRYANRAKNIK 242 (355)
Q Consensus 228 TlsTL~fa~rak~I~ 242 (355)
|++||+||+||++|+
T Consensus 327 Tl~tL~~a~~~~~ik 341 (341)
T cd01372 327 TLNTLKYANRARNIK 341 (341)
T ss_pred HHHHHHHHHHhccCC
Confidence 999999999999986
No 18
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1e-60 Score=461.31 Aligned_cols=224 Identities=39% Similarity=0.592 Sum_probs=210.5
Q ss_pred eEEeecCCCCCCCCCCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEcchhccccCCcccccccceecCCCCeEEcCceE
Q psy8840 2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDSGVYVKNLQS 81 (355)
Q Consensus 2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~~l~i~e~~~~~~~v~~l~~ 81 (355)
|||||+|+...+ |||||++++||+.++..+ ..|.|++||+|||||+|+|||++ .+++.+++++.++++|.|+++
T Consensus 98 KTyTm~G~~~~~---Glipr~~~~lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~--~~~l~i~~~~~~~~~v~~l~~ 171 (322)
T cd01367 98 KTYTMLGDENQE---GLYALAARDIFRLLAQPN-DDLGVTVSFFEIYGGKLFDLLND--RKRLSVLEDGKGNVQIVGLTE 171 (322)
T ss_pred CceEecCcCCcC---ccHHHHHHHHHHHHhccc-cccEEEEEEEeeecCchhhhccC--ccceeEEEcCCCCEEeCCCEE
Confidence 899999987555 999999999999998765 78999999999999999999987 578999999999999999999
Q ss_pred EEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCC-ccc
Q psy8840 82 YICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTG-ATG 160 (355)
Q Consensus 82 ~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~-~~g 160 (355)
+.|.|++|+++++..|..+|++++|.+|..|||||+||+|+|.+... ....|+|+|||||||||..+++ ..+
T Consensus 172 ~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~-------~~~~s~l~~vDLAGsE~~~~~~~~~~ 244 (322)
T cd01367 172 KPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL-------NKLLGKLSFIDLAGSERGADTSEHDR 244 (322)
T ss_pred EEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC-------CeeEEEEEEeecCCccccccccccch
Confidence 99999999999999999999999999999999999999999987653 3568999999999999998765 478
Q ss_pred cchHHHHhhhhhhHHHHHHHHHHhCCCCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHHHHHHHhc
Q psy8840 161 KRLKEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAK 239 (355)
Q Consensus 161 ~~~~E~~~IN~SL~~L~~vI~aL~~~~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL~fa~rak 239 (355)
.+++|+.+||+||++|++||.+|+.++ .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|+|
T Consensus 245 ~~~~e~~~IN~SL~~L~~vi~al~~~~-~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 245 QTRKEGAEINKSLLALKECIRALASNK-AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred hhHHhHhHHhHHHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 999999999999999999999999876 599999999999999999999999999999999999999999999999986
No 19
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=2.2e-60 Score=458.57 Aligned_cols=226 Identities=40% Similarity=0.619 Sum_probs=212.4
Q ss_pred eEEeecCCCCCCCCCCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEcchhccccCCcccccccceecCCCCeEEcCceE
Q psy8840 2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDSGVYVKNLQS 81 (355)
Q Consensus 2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~~l~i~e~~~~~~~v~~l~~ 81 (355)
|||||+|+...+ |||||++++||+.+... ...|.|++||+|||||.|+|||++. ...+.+++++++++++.|+++
T Consensus 94 KTyTm~G~~~~~---Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~-~~~l~i~~~~~~~~~v~gl~~ 168 (319)
T cd01376 94 KTHTMLGDPNEP---GLIPRTLSDLLRMGRKQ-AWTGAFSMSYYEIYNEKVYDLLEPA-KKELPIREDKDGNILIVGLTS 168 (319)
T ss_pred CcEEEeCCcCcc---chHHHHHHHHHHHHhhc-cccceEEEEEEEEECCEeeEccCCC-CCCceEEEcCCCCEEeeCCEE
Confidence 899999987655 99999999999988765 4789999999999999999999886 567999999999999999999
Q ss_pred EEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCCcccc
Q psy8840 82 YICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGK 161 (355)
Q Consensus 82 ~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~ 161 (355)
+.|.|++|+..++..|..+|..++|.+|..|||||+||+|+|.+.... ....|+|+|||||||||..++++.|.
T Consensus 169 ~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~------~~~~s~l~~VDLAGsE~~~~~~~~g~ 242 (319)
T cd01376 169 KPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN------IQLEGKLNLIDLAGSEDNRRTGNEGI 242 (319)
T ss_pred EEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC------ceEEEEEEEEECCCCCcccccCCccc
Confidence 999999999999999999999999999999999999999999876432 25789999999999999999999999
Q ss_pred chHHHHhhhhhhHHHHHHHHHHhCCCCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHHHHHHHhc
Q psy8840 162 RLKEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAK 239 (355)
Q Consensus 162 ~~~E~~~IN~SL~~L~~vI~aL~~~~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL~fa~rak 239 (355)
+++|+..||+||++|++||.+|+.+. .|||||||+||+||+|+|||||+|+||+||||...+++||++||+||+|||
T Consensus 243 ~~~e~~~iN~Sl~~L~~vi~aL~~~~-~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 243 RLKESAAINSSLFVLSKVVDALNKGL-PRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999865 599999999999999999999999999999999999999999999999986
No 20
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=5.9e-59 Score=450.52 Aligned_cols=235 Identities=49% Similarity=0.742 Sum_probs=220.7
Q ss_pred eEEeecCCCCCCCCCCchHHHHHHHHHHhhhcC--CceEEEEEEEEEEEcchhccccCCc--ccccccceecCCCCeEEc
Q psy8840 2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTE--NKQYLIRASYLEIYQEEIRDLLDKD--QSKRYELRENPDSGVYVK 77 (355)
Q Consensus 2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~~--~~~~~v~vS~~EIyne~v~DLL~~~--~~~~l~i~e~~~~~~~v~ 77 (355)
|||||+|+..++ |||||++++||..++... +..|.|++||+|||||+|+|||++. ..+++.+++++.+++++.
T Consensus 91 KT~tl~G~~~~~---Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~~~~i~ 167 (329)
T cd01366 91 KTYTMEGPPENP---GIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHDSKGETYVT 167 (329)
T ss_pred CcEEecCCCCCC---CcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEECCCCCEEec
Confidence 899999987555 999999999999998865 5789999999999999999999986 367899999999999999
Q ss_pred CceEEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCC
Q psy8840 78 NLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTG 157 (355)
Q Consensus 78 ~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~ 157 (355)
|++++.|.|++|+..++..|.++|..++|.+|..|||||+||+|+|.+.+.. ......|+|+||||||||+..+++
T Consensus 168 ~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~----~~~~~~s~l~~VDLaGsE~~~~~~ 243 (329)
T cd01366 168 NLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ----TGEQTRGKLNLVDLAGSERLKKSG 243 (329)
T ss_pred CCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC----CCcEEEEEEEEEECCCCccccccc
Confidence 9999999999999999999999999999999999999999999999876643 235688999999999999999999
Q ss_pred ccccchHHHHhhhhhhHHHHHHHHHHhCCCCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHHHHHHH
Q psy8840 158 ATGKRLKEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANR 237 (355)
Q Consensus 158 ~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL~fa~r 237 (355)
+.+.+++|+..||+||++|++||.+|+.+ ..|||||||+||+||+|+|||+++|+||+||||...+++||++||+||++
T Consensus 244 ~~~~~~~e~~~in~Sl~~L~~vl~~l~~~-~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~ 322 (329)
T cd01366 244 ATGDRLKEAQAINKSLSALGDVISALRSK-DSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASR 322 (329)
T ss_pred ccchhhHhHhhhhhHHHHHHHHHHHHhcC-CCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999987 45999999999999999999999999999999999999999999999999
Q ss_pred hccCccc
Q psy8840 238 AKNIKNQ 244 (355)
Q Consensus 238 ak~I~n~ 244 (355)
|++|++.
T Consensus 323 ~~~i~~~ 329 (329)
T cd01366 323 VRSVELG 329 (329)
T ss_pred hhcccCC
Confidence 9999873
No 21
>KOG0247|consensus
Probab=100.00 E-value=7.3e-59 Score=465.52 Aligned_cols=243 Identities=36% Similarity=0.586 Sum_probs=220.7
Q ss_pred eEEeecCCCCCCCCCCchHHHHHHHHHHhhhc------------------------------------------------
Q psy8840 2 YKYMIIGSKESAESKGVIPNSFDQIFSHIART------------------------------------------------ 33 (355)
Q Consensus 2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~------------------------------------------------ 33 (355)
|||||+|++..+ ||+||+++-||..|+..
T Consensus 128 KTYTm~G~~~~~---GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~~~nd~~~ts~~~~~~~~ 204 (809)
T KOG0247|consen 128 KTYTMTGTPDRP---GILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKREAMLNDRKSTSKAHRQSTP 204 (809)
T ss_pred ceEEeecCCCCC---CchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhhhccccccCcchhhccccH
Confidence 899999987776 99999999999888531
Q ss_pred -----------------CCceEEEEEEEEEEEcchhccccCCccc-----ccccceecCCCCeEEcCceEEEecCHHHHH
Q psy8840 34 -----------------ENKQYLIRASYLEIYQEEIRDLLDKDQS-----KRYELRENPDSGVYVKNLQSYICKNVKEIE 91 (355)
Q Consensus 34 -----------------~~~~~~v~vS~~EIyne~v~DLL~~~~~-----~~l~i~e~~~~~~~v~~l~~~~v~s~~e~~ 91 (355)
.+..|+|+|||+|||||-|||||.+.+. +...+++|.++.+||+|+++|.|.|.+|++
T Consensus 205 e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~ 284 (809)
T KOG0247|consen 205 EYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNGNMYVKGLTEVEVSSSEEAL 284 (809)
T ss_pred HHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCCCeeeccccEEEeccHHHHH
Confidence 1347899999999999999999987532 225688999999999999999999999999
Q ss_pred HHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCCccccchHHHHhhhh
Q psy8840 92 QVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINL 171 (355)
Q Consensus 92 ~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~~~~E~~~IN~ 171 (355)
++|+.|.++|++++|.+|+.|||||+||+|.+.+.....+. ..+.+|.|.|||||||||..+|+++|.|++|+++||.
T Consensus 285 ~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s--~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINt 362 (809)
T KOG0247|consen 285 ELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDS--NQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINT 362 (809)
T ss_pred HHHHHHHhhhhhhheeccccccccceeEEEEeeeccccccc--CceeEEeeeeeecccchhcccccchhHHHHhhccccH
Confidence 99999999999999999999999999999999887765322 5689999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCC----CCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHHHHHHHhccCcccccc
Q psy8840 172 SLSALGNVISALVDG----KNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRV 247 (355)
Q Consensus 172 SL~~L~~vI~aL~~~----~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL~fa~rak~I~n~~~~ 247 (355)
||++||+||.+|..+ ...+|||||||||++++.+|.|..+.+||+||+|.+.+|+|+++.|+||+-|+.|.+.+.+
T Consensus 363 SLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~ 442 (809)
T KOG0247|consen 363 SLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPV 442 (809)
T ss_pred HHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCcc
Confidence 999999999999863 2358999999999999999999999999999999999999999999999999999888777
Q ss_pred CC
Q psy8840 248 NE 249 (355)
Q Consensus 248 n~ 249 (355)
+.
T Consensus 443 ~~ 444 (809)
T KOG0247|consen 443 IK 444 (809)
T ss_pred cc
Confidence 54
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=8.5e-58 Score=443.39 Aligned_cols=241 Identities=57% Similarity=0.848 Sum_probs=225.1
Q ss_pred eEEeecCCCCCCCCCCchHHHHHHHHHHhhhcC-CceEEEEEEEEEEEcchhccccCCcccccccceecCCCCeEEcCce
Q psy8840 2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTE-NKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDSGVYVKNLQ 80 (355)
Q Consensus 2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~~-~~~~~v~vS~~EIyne~v~DLL~~~~~~~l~i~e~~~~~~~v~~l~ 80 (355)
|||||+|+..++ |||||++++||..+.... +..|.|++||+|||+|.|+|||++. .+++.+++++++++++.|++
T Consensus 93 KT~tl~G~~~~~---Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~-~~~l~i~~~~~~~~~i~~l~ 168 (335)
T smart00129 93 KTYTMSGTPDSP---GIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS-PKKLEIREDKKGGVYVKGLT 168 (335)
T ss_pred CceEecCCCCCC---CHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC-CCCcEEEECCCCCEEecCCE
Confidence 899999986555 999999999999997765 6789999999999999999999886 67899999999999999999
Q ss_pred EEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCCccc
Q psy8840 81 SYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATG 160 (355)
Q Consensus 81 ~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g 160 (355)
++.|.|++|+.+++..|..+|.+++|.+|..|||||+||+|+|.+....... .....|+|+||||||+||..+.++.|
T Consensus 169 ~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~--~~~~~s~l~~VDLaGse~~~~~~~~~ 246 (335)
T smart00129 169 EISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSS--GSGKASKLNLVDLAGSERASKTGAEG 246 (335)
T ss_pred EEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCC--CCEEEEEEEEEECCCCCccccccChh
Confidence 9999999999999999999999999999999999999999999976433222 45788999999999999999999999
Q ss_pred cchHHHHhhhhhhHHHHHHHHHHhCC-CCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHHHHHHHhc
Q psy8840 161 KRLKEASKINLSLSALGNVISALVDG-KNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAK 239 (355)
Q Consensus 161 ~~~~E~~~IN~SL~~L~~vI~aL~~~-~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL~fa~rak 239 (355)
.+++|+..||+||.+|++||.+|+++ +..|||||+|+||+||+++|||+++|+||+||||...+++||++||+||++++
T Consensus 247 ~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~ 326 (335)
T smart00129 247 DRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAK 326 (335)
T ss_pred HHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHh
Confidence 99999999999999999999999985 56699999999999999999999999999999999999999999999999999
Q ss_pred cCccccccC
Q psy8840 240 NIKNQPRVN 248 (355)
Q Consensus 240 ~I~n~~~~n 248 (355)
+|+|+|++|
T Consensus 327 ~i~~~p~~~ 335 (335)
T smart00129 327 EIKNKAIVN 335 (335)
T ss_pred hcccCCCcC
Confidence 999999875
No 23
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=9.9e-59 Score=449.82 Aligned_cols=239 Identities=49% Similarity=0.782 Sum_probs=218.0
Q ss_pred eEEeecCCCCCCCCCCchHHHHHHHHHHhhhcCC---ceEEEEEEEEEEEcchhccccCCcc---cccccceecCCCC-e
Q psy8840 2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTEN---KQYLIRASYLEIYQEEIRDLLDKDQ---SKRYELRENPDSG-V 74 (355)
Q Consensus 2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~~~---~~~~v~vS~~EIyne~v~DLL~~~~---~~~l~i~e~~~~~-~ 74 (355)
|||||+|+ ..+.++|||||++++||..+..... ..|.|+|||+|||||.|+|||++.. .+++.+++++..| +
T Consensus 88 KT~Tm~G~-~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~~~~g~~ 166 (335)
T PF00225_consen 88 KTYTMFGS-NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIREDSNKGSV 166 (335)
T ss_dssp HHHHHTBS-TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEETTTEEE
T ss_pred cccccccc-ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeeccccccc
Confidence 89999998 3345569999999999999988764 5899999999999999999999872 4579999999976 9
Q ss_pred EEcCceEEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCcccc
Q psy8840 75 YVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQS 154 (355)
Q Consensus 75 ~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~ 154 (355)
+|.|++++.|.|++++..+|..|.++|.++.|.+|..|||||+||+|+|.+..............|+|+||||||+|+..
T Consensus 167 ~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLaGsE~~~ 246 (335)
T PF00225_consen 167 YIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLAGSERLK 246 (335)
T ss_dssp EETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEEESTGGC
T ss_pred eeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeecccccccc
Confidence 99999999999999999999999999999999999999999999999999987665443223688999999999999999
Q ss_pred CCCcc-ccchHHHHhhhhhhHHHHHHHHHHhCC-CCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHH
Q psy8840 155 KTGAT-GKRLKEASKINLSLSALGNVISALVDG-KNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTL 232 (355)
Q Consensus 155 ~t~~~-g~~~~E~~~IN~SL~~L~~vI~aL~~~-~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL 232 (355)
+.++. +.+++|+..||+||.+|++||.+|+.+ +..||||||||||+||+|+|||||+|+||+||+|...+++||++||
T Consensus 247 ~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL 326 (335)
T PF00225_consen 247 KSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTL 326 (335)
T ss_dssp GCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHH
T ss_pred cccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHHHHHHHH
Confidence 98874 788999999999999999999999997 4569999999999999999999999999999999999999999999
Q ss_pred HHHHHhccC
Q psy8840 233 RYANRAKNI 241 (355)
Q Consensus 233 ~fa~rak~I 241 (355)
+||+++|+|
T Consensus 327 ~fa~~~~~I 335 (335)
T PF00225_consen 327 RFASRAREI 335 (335)
T ss_dssp HHHHHHTTE
T ss_pred HHHHHHcCC
Confidence 999999986
No 24
>KOG0244|consensus
Probab=100.00 E-value=1.4e-59 Score=482.53 Aligned_cols=269 Identities=46% Similarity=0.657 Sum_probs=246.1
Q ss_pred eEEeecCCCCCCCC-CCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEcchhccccCCcc-cccccceecCCCCeEEcCc
Q psy8840 2 YKYMIIGSKESAES-KGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQ-SKRYELRENPDSGVYVKNL 79 (355)
Q Consensus 2 KTyTm~G~~~~~~~-~GIipra~~~lF~~i~~~~~~~~~v~vS~~EIyne~v~DLL~~~~-~~~l~i~e~~~~~~~v~~l 79 (355)
|||||.+....... .|+|||+++++|..+.......|.|.|||+|||++.|+|||.|.. ...+.+++ +.+++.+.|+
T Consensus 79 kTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~it~~gl 157 (913)
T KOG0244|consen 79 KTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGEITIRGL 157 (913)
T ss_pred ceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCceEEEee
Confidence 89999998544333 599999999999999998888899999999999999999998642 23367777 7888999999
Q ss_pred eEEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCCcc
Q psy8840 80 QSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGAT 159 (355)
Q Consensus 80 ~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~ 159 (355)
+++.|.+..++...|..|...|++++|+||..|||||+||++.+++...... ....++||+|||||||||.++|+++
T Consensus 158 te~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~---~s~~~sKlhlVDLAGSER~kkT~a~ 234 (913)
T KOG0244|consen 158 TEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK---RSSFCSKLHLVDLAGSERVKKTKAE 234 (913)
T ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc---cchhhhhhheeeccccccccccccc
Confidence 9999999999999999999999999999999999999999999987554322 2256799999999999999999999
Q ss_pred ccchHHHHhhhhhhHHHHHHHHHHhCCC-CCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHHHHHHHh
Q psy8840 160 GKRLKEASKINLSLSALGNVISALVDGK-NIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRA 238 (355)
Q Consensus 160 g~~~~E~~~IN~SL~~L~~vI~aL~~~~-~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL~fa~ra 238 (355)
|+|++||.+||.+|++||+||+||.+.+ ..|||||||||||||||+||||+.|+||+||||++.+..||++||+||.||
T Consensus 235 gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Ra 314 (913)
T KOG0244|consen 235 GDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRA 314 (913)
T ss_pred hhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHH
Confidence 9999999999999999999999998754 469999999999999999999999999999999999999999999999999
Q ss_pred ccCccccccCCCchHHHHHHHHHHHHHHHHHHhhcc
Q psy8840 239 KNIKNQPRVNEDPKEALLREYQEEIQRLKNLLNQRT 274 (355)
Q Consensus 239 k~I~n~~~~n~~~~~~~~~~l~~ei~~Lk~~l~~~~ 274 (355)
+.|+|+|.+|.+|....+..++.+++.|+..|....
T Consensus 315 k~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 315 KQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred HHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999997665
No 25
>KOG0239|consensus
Probab=100.00 E-value=8.4e-58 Score=471.55 Aligned_cols=240 Identities=43% Similarity=0.647 Sum_probs=223.2
Q ss_pred eEEeecCCCCCCCCCCchHHHHHHHHHHhhhcC-CceEEEEEEEEEEEcchhccccCCcc-cccccceecCCCCeEEcCc
Q psy8840 2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTE-NKQYLIRASYLEIYQEEIRDLLDKDQ-SKRYELRENPDSGVYVKNL 79 (355)
Q Consensus 2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~~-~~~~~v~vS~~EIyne~v~DLL~~~~-~~~l~i~e~~~~~~~v~~l 79 (355)
|||||.|+ +++++|||||++++||..+.... .+.|.+.+||+|||||.|+|||++.+ ..++.|+.+++++.+|.++
T Consensus 406 KTyTM~G~--~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~ 483 (670)
T KOG0239|consen 406 KTYTMSGP--TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEGNLMVPLL 483 (670)
T ss_pred ccccccCC--CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeEEEcCCCceecccc
Confidence 89999996 45667999999999999998865 78999999999999999999999874 6789999999999999999
Q ss_pred eEEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCCcc
Q psy8840 80 QSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGAT 159 (355)
Q Consensus 80 ~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~ 159 (355)
+.+.|.+.+++..++..|..+|++++|.+|.+|||||+||+|+|...+ ...+....+.|+|||||||||.++++++
T Consensus 484 t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~----~~t~~~~~g~l~LVDLAGSER~~~s~~t 559 (670)
T KOG0239|consen 484 TVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGIN----ELTGIRVTGVLNLVDLAGSERVSKSGVT 559 (670)
T ss_pred eEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccc----cCcccccccceeEeecccCcccCcCCCc
Confidence 999999999999999999999999999999999999999999996543 2234567799999999999999999999
Q ss_pred ccchHHHHhhhhhhHHHHHHHHHHhCCCCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHHHHHHHhc
Q psy8840 160 GKRLKEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAK 239 (355)
Q Consensus 160 g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL~fa~rak 239 (355)
|+|++|+.+||+||++||+||.||+. +..||||||||||+||+|+|||++||+|+++|||...++.||+++|+||.|++
T Consensus 560 G~RlkE~Q~INkSLS~LgdVi~AL~~-k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~ 638 (670)
T KOG0239|consen 560 GERLKEAQNINKSLSALGDVISALAS-KRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVR 638 (670)
T ss_pred hhhhHHHHHhchhhhhhHHHHHHHhh-cCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhh
Confidence 99999999999999999999999998 45699999999999999999999999999999999999999999999999999
Q ss_pred cCccccccC
Q psy8840 240 NIKNQPRVN 248 (355)
Q Consensus 240 ~I~n~~~~n 248 (355)
.+...+..-
T Consensus 639 ~~~lG~a~~ 647 (670)
T KOG0239|consen 639 SVELGSARK 647 (670)
T ss_pred ceecccccc
Confidence 998876653
No 26
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1e-55 Score=427.46 Aligned_cols=233 Identities=56% Similarity=0.843 Sum_probs=218.1
Q ss_pred eEEeecCCCCCCCCCCchHHHHHHHHHHhhhcC--CceEEEEEEEEEEEcchhccccCCc-ccccccceecCCCCeEEcC
Q psy8840 2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTE--NKQYLIRASYLEIYQEEIRDLLDKD-QSKRYELRENPDSGVYVKN 78 (355)
Q Consensus 2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~~--~~~~~v~vS~~EIyne~v~DLL~~~-~~~~l~i~e~~~~~~~v~~ 78 (355)
|||||+|+...+ |||||++++||..+.... ...|.|++||+|||+|+|+|||++. ...++.+++++.+++++.|
T Consensus 92 KT~tl~G~~~~~---Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~~~~~~~v~~ 168 (328)
T cd00106 92 KTYTMFGSPKDP---GIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDPKGGVYVKG 168 (328)
T ss_pred CeEEecCCCCCC---chHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEcCCCCEEEeC
Confidence 899999987655 999999999999998876 5789999999999999999999885 4578999999999999999
Q ss_pred ceEEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCCc
Q psy8840 79 LQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGA 158 (355)
Q Consensus 79 l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~ 158 (355)
++++.|.|++|++.++..|.++|..++|.+|..|||||+||+|+|.+........ ....|+|+||||||+|+..+.+.
T Consensus 169 l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~--~~~~s~l~~VDLaGse~~~~~~~ 246 (328)
T cd00106 169 LTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGR--SIKSSKLNLVDLAGSERAKKTGA 246 (328)
T ss_pred CEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCc--cEEEEEEEEEECCCCCcccccCC
Confidence 9999999999999999999999999999999999999999999999876543321 46889999999999999999999
Q ss_pred cccchHHHHhhhhhhHHHHHHHHHHhCCC-CCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHHHHHHH
Q psy8840 159 TGKRLKEASKINLSLSALGNVISALVDGK-NIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANR 237 (355)
Q Consensus 159 ~g~~~~E~~~IN~SL~~L~~vI~aL~~~~-~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL~fa~r 237 (355)
.+.++.|+..||+||.+|++||.+|+.+. ..|||||+||||+||+|+|||+++|+||+||+|...+++||++||+||+|
T Consensus 247 ~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r 326 (328)
T cd00106 247 EGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASR 326 (328)
T ss_pred chhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999876 46999999999999999999999999999999999999999999999999
Q ss_pred hc
Q psy8840 238 AK 239 (355)
Q Consensus 238 ak 239 (355)
||
T Consensus 327 ~~ 328 (328)
T cd00106 327 AK 328 (328)
T ss_pred cC
Confidence 86
No 27
>KOG0246|consensus
Probab=100.00 E-value=4.4e-54 Score=420.81 Aligned_cols=235 Identities=36% Similarity=0.508 Sum_probs=211.8
Q ss_pred eEEeecCCCCC---CCCCCchHHHHHHHHHHhhhcC--CceEEEEEEEEEEEcchhccccCCcccccccceecCCCCeEE
Q psy8840 2 YKYMIIGSKES---AESKGVIPNSFDQIFSHIARTE--NKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDSGVYV 76 (355)
Q Consensus 2 KTyTm~G~~~~---~~~~GIipra~~~lF~~i~~~~--~~~~~v~vS~~EIyne~v~DLL~~~~~~~l~i~e~~~~~~~v 76 (355)
|||||-|+... ....||+..+.+|+|..+.... ...+.|++||+|||+.+|||||++ .+++.+.||.+..|+|
T Consensus 305 KT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~--k~KLrvLEDg~QQVqV 382 (676)
T KOG0246|consen 305 KTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND--KKKLRVLEDGNQQVQV 382 (676)
T ss_pred ceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc--ccceEEeecCCceEEE
Confidence 89999887643 2457999999999999987754 668899999999999999999987 6789999999999999
Q ss_pred cCceEEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCC
Q psy8840 77 KNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKT 156 (355)
Q Consensus 77 ~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t 156 (355)
.||++..|.+.+|++.+|..|+..|+++.|..|..|||||+||+|.+.... ....+|+++||||||+||...|
T Consensus 383 VGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~-------~~k~hGKfSlIDLAGnERGaDt 455 (676)
T KOG0246|consen 383 VGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG-------EFKLHGKFSLIDLAGNERGADT 455 (676)
T ss_pred eeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC-------cceeEeEEEEEEccCCccCCcc
Confidence 999999999999999999999999999999999999999999999985321 2457899999999999998776
Q ss_pred Cc-cccchHHHHhhhhhhHHHHHHHHHHhCCCCCcccCCCCcccccccccCCC-CceEEEEEecCCCCCCHHHHHHHHHH
Q psy8840 157 GA-TGKRLKEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGG-NSKTLMIANIGPASYNYEESLTTLRY 234 (355)
Q Consensus 157 ~~-~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~~iPyRdSkLT~lL~dsLgG-nskt~mI~~vsp~~~~~~eTlsTL~f 234 (355)
.. ..+...||+.||+||+||..||.||...+ .|+|||.||||.+|+|||-| |++|+||+||||.....+.||+||||
T Consensus 456 s~adRqtRlEGAEINKSLLALKECIRaLg~nk-~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRY 534 (676)
T KOG0246|consen 456 SSADRQTRLEGAEINKSLLALKECIRALGRNK-SHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRY 534 (676)
T ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHhcCCC-CCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHH
Confidence 54 55667799999999999999999997755 49999999999999999988 99999999999999999999999999
Q ss_pred HHHhccCccccc
Q psy8840 235 ANRAKNIKNQPR 246 (355)
Q Consensus 235 a~rak~I~n~~~ 246 (355)
|+|+|.......
T Consensus 535 AdRVKeLsv~~~ 546 (676)
T KOG0246|consen 535 ADRVKELSVDGG 546 (676)
T ss_pred HHHHHhhcCCCC
Confidence 999999765443
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.4e-51 Score=418.80 Aligned_cols=240 Identities=46% Similarity=0.711 Sum_probs=222.2
Q ss_pred eEEeecCCCCCCCCCCchHHHHHHHHHHhhhcC-CceEEEEEEEEEEEcchhccccCCcccccccceecCCCCeEEcCce
Q psy8840 2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTE-NKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDSGVYVKNLQ 80 (355)
Q Consensus 2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~~-~~~~~v~vS~~EIyne~v~DLL~~~~~~~l~i~e~~~~~~~v~~l~ 80 (355)
|||||.|....+ ||||+++.+||+.+.... +..|.|.+||+|||||+++|||.+.. ..+.++++...+++|.|++
T Consensus 103 Ktyt~~G~~~~~---Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~-~~~~~~~~~~~~v~v~~l~ 178 (568)
T COG5059 103 KTYTMSGTEEEP---GIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNE-ESLNIREDSLLGVKVAGLT 178 (568)
T ss_pred ceeEeecCcccc---chHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCcc-ccccccccCCCceEeecce
Confidence 899999987555 999999999999998865 67899999999999999999999863 3378999999999999999
Q ss_pred EEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCCccc
Q psy8840 81 SYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATG 160 (355)
Q Consensus 81 ~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g 160 (355)
+..+.+++|++.+|..|..+|+++.|.+|..|||||+||++++.+.....+. ...++++||||||||+...++..+
T Consensus 179 ~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~----~~~~~l~lvDLagSE~~~~~~~~~ 254 (568)
T COG5059 179 EKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGT----SETSKLSLVDLAGSERAARTGNRG 254 (568)
T ss_pred EEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccc----eecceEEEEeeccccccchhhccc
Confidence 9999999999999999999999999999999999999999999887654322 234799999999999999999999
Q ss_pred cchHHHHhhhhhhHHHHHHHHHHhC-CCCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHHHHHHHhc
Q psy8840 161 KRLKEASKINLSLSALGNVISALVD-GKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAK 239 (355)
Q Consensus 161 ~~~~E~~~IN~SL~~L~~vI~aL~~-~~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL~fa~rak 239 (355)
.+++|+..||+||.+||+||.+|.+ ++..|||||+|||||+|+++|||+++|+|||||+|...++++|.+||+||.||+
T Consensus 255 ~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak 334 (568)
T COG5059 255 TRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAK 334 (568)
T ss_pred chhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHh
Confidence 9999999999999999999999987 345699999999999999999999999999999999999999999999999999
Q ss_pred cCccccccCC
Q psy8840 240 NIKNQPRVNE 249 (355)
Q Consensus 240 ~I~n~~~~n~ 249 (355)
.|++.+..|.
T Consensus 335 ~I~~~~~~~~ 344 (568)
T COG5059 335 SIKNKIQVNS 344 (568)
T ss_pred hcCCcccccC
Confidence 9999999995
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=3.5e-41 Score=301.10 Aligned_cols=129 Identities=60% Similarity=0.855 Sum_probs=120.0
Q ss_pred HHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCCccccchHHHHhh
Q psy8840 90 IEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKI 169 (355)
Q Consensus 90 ~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~~~~E~~~I 169 (355)
++.++..|..+|..+.|.+|..|||||+||+|++.+.+...++. .....|+|+||||||||+..++++.+.+++|+..|
T Consensus 58 ~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~-~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~i 136 (186)
T cd01363 58 VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASAT-EQPKVGKINLVDLAGSERIDFSGAEGSRLTETANI 136 (186)
T ss_pred HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCc-cceeeeeEEEEEccccccccccCCchhhHHHHHHH
Confidence 78999999999999999999999999999999999876654332 45678999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhCCCCCcccCCCCcccccccccCCCCceEEEEEecCC
Q psy8840 170 NLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGP 220 (355)
Q Consensus 170 N~SL~~L~~vI~aL~~~~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp 220 (355)
|+||++|++||.+|+++. .||||||||||+||+|+|||||+|+||+||||
T Consensus 137 n~sl~~L~~~i~~l~~~~-~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 137 NKSLSTLGNVISALAERD-SHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred hhHHHHHHHHHHHHhcCC-CCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 999999999999999865 49999999999999999999999999999999
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=93.17 E-value=0.015 Score=60.65 Aligned_cols=81 Identities=41% Similarity=0.516 Sum_probs=65.9
Q ss_pred cCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCCccccchHHHHhhhhhhHH
Q psy8840 96 NGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSA 175 (355)
Q Consensus 96 ~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~~ 175 (355)
.....+..+.+..|..++++|++|+............ .. ++.|||||+||. -+...|.++++...+|++|..
T Consensus 486 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~----~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~ 557 (568)
T COG5059 486 KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSSTKE----LS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSS 557 (568)
T ss_pred hhccchhhcccchhhhhcccchhhhhcccchhhhhHH----HH---hhhhhccccccc-hhhhhHHHHHhhHhhhhcccc
Confidence 4567788899999999999999998776322211111 11 799999999999 999999999999999999999
Q ss_pred HHHHHHHHh
Q psy8840 176 LGNVISALV 184 (355)
Q Consensus 176 L~~vI~aL~ 184 (355)
++.+|.++.
T Consensus 558 ~~d~~~~~~ 566 (568)
T COG5059 558 LGDVIHALG 566 (568)
T ss_pred chhhhhhcc
Confidence 999998864
No 31
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.36 E-value=12 Score=33.90 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcc
Q psy8840 251 PKEALLREYQEEIQRLKNLLNQRT 274 (355)
Q Consensus 251 ~~~~~~~~l~~ei~~Lk~~l~~~~ 274 (355)
+....+.+++.|+..|+.+|+...
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677889999999999987644
No 32
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.93 E-value=6.9 Score=40.78 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8840 319 KLLQEVESKQKAIEAEKKYTEELAKRINSME 349 (355)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e 349 (355)
.+-.++....++|+.+++..++|+.++..++
T Consensus 478 ~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 478 ARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777778888888888888888776
No 33
>KOG0971|consensus
Probab=87.44 E-value=9.6 Score=41.52 Aligned_cols=46 Identities=24% Similarity=0.405 Sum_probs=37.0
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy8840 308 NENHLSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSMESKLL 353 (355)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~ 353 (355)
...+.......++.+++|.+..+++..+.-.|.|..++..+|++|.
T Consensus 389 DlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~ia 434 (1243)
T KOG0971|consen 389 DLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIA 434 (1243)
T ss_pred hcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444556678899999999999999999999999999999873
No 34
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=81.05 E-value=31 Score=31.16 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy8840 253 EALLREYQEEIQRLKNLLN 271 (355)
Q Consensus 253 ~~~~~~l~~ei~~Lk~~l~ 271 (355)
-.+|+.|.++|..++....
T Consensus 26 L~lIksLKeei~emkk~e~ 44 (201)
T PF13851_consen 26 LELIKSLKEEIAEMKKKEE 44 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567777777777776554
No 35
>KOG0239|consensus
Probab=80.37 E-value=3.4 Score=44.12 Aligned_cols=48 Identities=25% Similarity=0.526 Sum_probs=29.4
Q ss_pred EEeecCCCCCCCCCCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEcchhccccCCc
Q psy8840 3 KYMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKD 59 (355)
Q Consensus 3 TyTm~G~~~~~~~~GIipra~~~lF~~i~~~~~~~~~v~vS~~EIyne~v~DLL~~~ 59 (355)
+|++.+...+. |++-+.+..++......++.. .++.|++.+.|++..-
T Consensus 65 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 112 (670)
T KOG0239|consen 65 TYTMEGSNQPG---GLLARLFKELIDLANSDKTSN------VVEAYNERLRDLLSEL 112 (670)
T ss_pred hhhhhhhcCcc---hhHHHhhhhcccccccCCCch------hHHHHHHHHhhhcccc
Confidence 46666655444 666666666655433333222 5777889999988653
No 36
>KOG0963|consensus
Probab=78.12 E-value=32 Score=36.08 Aligned_cols=94 Identities=16% Similarity=0.217 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Q psy8840 253 EALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNEEEDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIE 332 (355)
Q Consensus 253 ~~~~~~l~~ei~~Lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (355)
...+..++.|+..|+.++..........-.++.+.....++..+..+.++...+.....-..++.+....++.+...++.
T Consensus 248 q~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~ 327 (629)
T KOG0963|consen 248 QQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELK 327 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677889999999999865443222211122223333333333333333333333322233333333334444444444
Q ss_pred HHHHHHHHHHHHHH
Q psy8840 333 AEKKYTEELAKRIN 346 (355)
Q Consensus 333 ~~~~~~~~l~~~~~ 346 (355)
......++|.++++
T Consensus 328 ~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 328 AKISELEELKEKLN 341 (629)
T ss_pred HHHHHHHHHHHHHh
Confidence 44444444444443
No 37
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.35 E-value=22 Score=32.26 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhcc
Q psy8840 257 REYQEEIQRLKNLLNQRT 274 (355)
Q Consensus 257 ~~l~~ei~~Lk~~l~~~~ 274 (355)
...+..+..|+.++....
T Consensus 89 p~~~~rlp~le~el~~l~ 106 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLT 106 (206)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 356677777887776444
No 38
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=75.28 E-value=30 Score=33.60 Aligned_cols=7 Identities=14% Similarity=0.344 Sum_probs=3.9
Q ss_pred cccccCC
Q psy8840 201 LLQDSLG 207 (355)
Q Consensus 201 lL~dsLg 207 (355)
|+++++.
T Consensus 105 Lf~EY~~ 111 (325)
T PF08317_consen 105 LFREYYT 111 (325)
T ss_pred HHHHHHc
Confidence 5566653
No 39
>KOG1962|consensus
Probab=74.66 E-value=31 Score=31.57 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=21.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8840 312 LSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRIN 346 (355)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (355)
..+..+.++....+...++..+..++...|++++.
T Consensus 176 ~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 176 KAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 34555556666666666666666666666666654
No 40
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=73.37 E-value=52 Score=35.53 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHH
Q psy8840 224 NYEESLTTLRYA 235 (355)
Q Consensus 224 ~~~eTlsTL~fa 235 (355)
...+-+.|++|-
T Consensus 331 kta~KVrt~KYL 342 (861)
T PF15254_consen 331 KTAEKVRTLKYL 342 (861)
T ss_pred hHHHHHHHHHHH
Confidence 456667777773
No 41
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=72.94 E-value=69 Score=28.78 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy8840 254 ALLREYQEEIQRLKNLLN 271 (355)
Q Consensus 254 ~~~~~l~~ei~~Lk~~l~ 271 (355)
.++....+|+..|+..|.
T Consensus 61 qll~~h~eEvr~Lr~~LR 78 (194)
T PF15619_consen 61 QLLQRHNEEVRVLRERLR 78 (194)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555553
No 42
>PRK11637 AmiB activator; Provisional
Probab=71.50 E-value=1.2e+02 Score=30.56 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy8840 253 EALLREYQEEIQRLKNLLN 271 (355)
Q Consensus 253 ~~~~~~l~~ei~~Lk~~l~ 271 (355)
...+.+++.++..++.++.
T Consensus 46 ~~~l~~l~~qi~~~~~~i~ 64 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVR 64 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554
No 43
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=70.79 E-value=27 Score=33.79 Aligned_cols=16 Identities=13% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8840 255 LLREYQEEIQRLKNLL 270 (355)
Q Consensus 255 ~~~~l~~ei~~Lk~~l 270 (355)
++..++.++..+..+.
T Consensus 10 l~~~l~~~~~~~~~E~ 25 (314)
T PF04111_consen 10 LLEQLDKQLEQAEKER 25 (314)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 44
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=70.66 E-value=39 Score=32.03 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q psy8840 337 YTEELAKRINSME 349 (355)
Q Consensus 337 ~~~~l~~~~~~~e 349 (355)
.+..|+.-+..||
T Consensus 157 QN~KLEsLLqsME 169 (305)
T PF15290_consen 157 QNKKLESLLQSME 169 (305)
T ss_pred hHhHHHHHHHHHH
Confidence 4455666666666
No 45
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=70.26 E-value=71 Score=30.97 Aligned_cols=16 Identities=13% Similarity=0.329 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhh
Q psy8840 336 KYTEELAKRINSMESK 351 (355)
Q Consensus 336 ~~~~~l~~~~~~~e~~ 351 (355)
.+...|..++..||..
T Consensus 276 ~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 276 SEVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4666777777777653
No 46
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=68.59 E-value=42 Score=36.24 Aligned_cols=21 Identities=10% Similarity=0.335 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy8840 253 EALLREYQEEIQRLKNLLNQR 273 (355)
Q Consensus 253 ~~~~~~l~~ei~~Lk~~l~~~ 273 (355)
...+.+|+.++++||.+|...
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~ 437 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSS 437 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 345567888888888887543
No 47
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=67.57 E-value=31 Score=37.34 Aligned_cols=40 Identities=25% Similarity=0.449 Sum_probs=26.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8840 312 LSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSMESKL 352 (355)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 352 (355)
...+|+ ++.++|+....++...+...+++..|+...+.++
T Consensus 630 LS~AEr-~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i 669 (717)
T PF10168_consen 630 LSEAER-EFKKELERMKDQLQDLKASIEQLKKKLDYQQRQI 669 (717)
T ss_pred CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344554 5677777777777776667777777776655544
No 48
>PRK11637 AmiB activator; Provisional
Probab=67.18 E-value=93 Score=31.27 Aligned_cols=7 Identities=14% Similarity=0.368 Sum_probs=2.8
Q ss_pred HHHHHHH
Q psy8840 255 LLREYQE 261 (355)
Q Consensus 255 ~~~~l~~ 261 (355)
++.+|+.
T Consensus 171 ~l~~l~~ 177 (428)
T PRK11637 171 TIAELKQ 177 (428)
T ss_pred HHHHHHH
Confidence 3444433
No 49
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=65.97 E-value=49 Score=29.69 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8840 298 KLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSM 348 (355)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 348 (355)
.+++....+.....-.+.+...|..+++..+.+..+...+.+.+.++.+.|
T Consensus 78 ~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 78 SLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 344444444444444555666666666666666555555555555555444
No 50
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=65.90 E-value=71 Score=33.61 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=11.3
Q ss_pred ecCCCCCCHHHHHHHHH
Q psy8840 217 NIGPASYNYEESLTTLR 233 (355)
Q Consensus 217 ~vsp~~~~~~eTlsTL~ 233 (355)
.+++++.|.-++|..--
T Consensus 335 ~~~~~ddH~RDALAAA~ 351 (652)
T COG2433 335 KISVSDDHERDALAAAY 351 (652)
T ss_pred CCCCCCchHHHHHHHHH
Confidence 46777777777776533
No 51
>KOG0994|consensus
Probab=64.08 E-value=1.3e+02 Score=34.28 Aligned_cols=42 Identities=24% Similarity=0.425 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhccCccccccCCCchHHHHHHHHHHHHHHHHHHh
Q psy8840 228 SLTTLRYANRAKNIKNQPRVNEDPKEALLREYQEEIQRLKNLLN 271 (355)
Q Consensus 228 TlsTL~fa~rak~I~n~~~~n~~~~~~~~~~l~~ei~~Lk~~l~ 271 (355)
+..|=+|-.+|+.|+..+..- +-...+.++++.+...|..|.
T Consensus 1177 ~~rt~rl~~~A~~l~~tGv~g--ay~s~f~~me~kl~~ir~il~ 1218 (1758)
T KOG0994|consen 1177 ALRTHRLINRAKELKQTGVLG--AYASRFLDMEEKLEEIRAILS 1218 (1758)
T ss_pred HHHHHHHHHHHHHhhhccCch--hhHhHHHHHHHHHHHHHHHhc
Confidence 345667778888888766654 334455566666666666663
No 52
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=61.84 E-value=1.2e+02 Score=27.20 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHh
Q psy8840 335 KKYTEELAKRINSMES 350 (355)
Q Consensus 335 ~~~~~~l~~~~~~~e~ 350 (355)
..+...|..+|+..|.
T Consensus 177 ~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 177 QEEIQRLNQKLKEKER 192 (194)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3455555555555554
No 53
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=61.04 E-value=1.6e+02 Score=28.50 Aligned_cols=7 Identities=14% Similarity=0.411 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy8840 338 TEELAKR 344 (355)
Q Consensus 338 ~~~l~~~ 344 (355)
...+..+
T Consensus 115 ~~sl~~q 121 (314)
T PF04111_consen 115 RDSLKNQ 121 (314)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 54
>KOG3990|consensus
Probab=61.01 E-value=63 Score=30.20 Aligned_cols=21 Identities=43% Similarity=0.687 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q psy8840 254 ALLREYQEEIQRLKNLLNQRT 274 (355)
Q Consensus 254 ~~~~~l~~ei~~Lk~~l~~~~ 274 (355)
..|..|.+||++|+..|.+..
T Consensus 225 V~i~~lkeeia~Lkk~L~qkd 245 (305)
T KOG3990|consen 225 VKIQKLKEEIARLKKLLHQKD 245 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhH
Confidence 467889999999999997543
No 55
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=60.47 E-value=93 Score=30.13 Aligned_cols=29 Identities=28% Similarity=0.325 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8840 323 EVESKQKAIEAEKKYTEELAKRINSMESK 351 (355)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 351 (355)
+++.....++....+..++...|...|+.
T Consensus 233 ~l~~l~~~I~~~~~~k~e~~~~I~~ae~~ 261 (312)
T smart00787 233 ELQELESKIEDLTNKKSELNTEIAEAEKK 261 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555555553
No 56
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=59.87 E-value=90 Score=30.74 Aligned_cols=59 Identities=25% Similarity=0.296 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8840 291 YLNEEEDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSMES 350 (355)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~ 350 (355)
.+..++-.+.+ |+.+..........|.++.++...+++.+.......+.+.+..+-+..
T Consensus 92 ml~RL~~EL~~-Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~ 150 (355)
T PF09766_consen 92 MLARLEFELEQ-RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQE 150 (355)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33333333332 344444444555666666666666666666655555555555544433
No 57
>KOG2129|consensus
Probab=59.33 E-value=51 Score=33.03 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=22.8
Q ss_pred CccccccCCCchH---HHHHHHHHHHHHHHHHHhhcc
Q psy8840 241 IKNQPRVNEDPKE---ALLREYQEEIQRLKNLLNQRT 274 (355)
Q Consensus 241 I~n~~~~n~~~~~---~~~~~l~~ei~~Lk~~l~~~~ 274 (355)
|.+.|.+..|... ..|+.|+.||.+|+..|....
T Consensus 237 ia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aq 273 (552)
T KOG2129|consen 237 IAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQ 273 (552)
T ss_pred hhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555443 456788999999999996433
No 58
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=59.29 E-value=65 Score=29.63 Aligned_cols=6 Identities=33% Similarity=0.567 Sum_probs=2.6
Q ss_pred EEEEEe
Q psy8840 212 TLMIAN 217 (355)
Q Consensus 212 t~mI~~ 217 (355)
.++|||
T Consensus 60 lvlIAT 65 (290)
T COG4026 60 LVLIAT 65 (290)
T ss_pred EEEEee
Confidence 444443
No 59
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=57.57 E-value=67 Score=34.17 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHh
Q psy8840 256 LREYQEEIQRLKNLLN 271 (355)
Q Consensus 256 ~~~l~~ei~~Lk~~l~ 271 (355)
+..|++|+..|..++.
T Consensus 89 ~~~L~kElE~L~~qlq 104 (617)
T PF15070_consen 89 AEHLRKELESLEEQLQ 104 (617)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555554443
No 60
>PF13864 Enkurin: Calmodulin-binding
Probab=57.02 E-value=95 Score=24.43 Aligned_cols=41 Identities=32% Similarity=0.563 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhhh
Q psy8840 312 LSDAEKQKLLQEVESKQKAIEAE-------------KKYTEELAKRINSMESKL 352 (355)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~e~~~ 352 (355)
+.++++..+++.|..+..++..+ +..+++|++++..+|.-|
T Consensus 37 l~eeER~~lL~~Lk~~~~el~~ey~~lp~~~DT~~~~~rK~~lE~~L~qlE~dI 90 (98)
T PF13864_consen 37 LSEEERQELLEGLKKNWDELNKEYQKLPFSIDTLRKKRRKEELEKELKQLEKDI 90 (98)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766666554 356777777777777654
No 61
>KOG0163|consensus
Probab=56.31 E-value=1.1e+02 Score=33.17 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=5.1
Q ss_pred chHHHHHHHHHHh
Q psy8840 18 VIPNSFDQIFSHI 30 (355)
Q Consensus 18 Iipra~~~lF~~i 30 (355)
|+.+.|++|-..|
T Consensus 428 iYSkLFD~lV~~i 440 (1259)
T KOG0163|consen 428 IYSKLFDWLVGRI 440 (1259)
T ss_pred HHHHHHHHHHHHh
Confidence 3333344443433
No 62
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=56.27 E-value=25 Score=26.76 Aligned_cols=30 Identities=17% Similarity=0.434 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8840 322 QEVESKQKAIEAEKKYTEELAKRINSMESK 351 (355)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 351 (355)
++.+.....+.+.+...++|+.|+..||.+
T Consensus 50 EEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 50 EEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456667777788888889999999999874
No 63
>KOG1029|consensus
Probab=56.14 E-value=1.3e+02 Score=32.84 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy8840 336 KYTEELAKRINSMESKL 352 (355)
Q Consensus 336 ~~~~~l~~~~~~~e~~~ 352 (355)
.+.+.|..++++|+.+|
T Consensus 444 ~eletLn~k~qqls~kl 460 (1118)
T KOG1029|consen 444 QELETLNFKLQQLSGKL 460 (1118)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 45566666777777665
No 64
>KOG1853|consensus
Probab=55.60 E-value=1.8e+02 Score=27.29 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8840 320 LLQEVESKQKAIEAEK 335 (355)
Q Consensus 320 ~~~~~~~~~~~~~~~~ 335 (355)
-+.+|++....|+..+
T Consensus 113 yiReLEQaNDdLErak 128 (333)
T KOG1853|consen 113 YIRELEQANDDLERAK 128 (333)
T ss_pred HHHHHHHhccHHHHhh
Confidence 3566666666666654
No 65
>KOG0995|consensus
Probab=55.12 E-value=1.4e+02 Score=31.19 Aligned_cols=57 Identities=11% Similarity=0.220 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8840 292 LNEEEDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSME 349 (355)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e 349 (355)
+...+.+...++..+..+ ...-++-.++-.+.++..+++.....+.+.|.+++-.++
T Consensus 310 ~e~lq~~~d~Lk~~Ie~Q-~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~ 366 (581)
T KOG0995|consen 310 IEKLQKENDELKKQIELQ-GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELK 366 (581)
T ss_pred HHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333344444444444433 344444455555555566666665555555555554433
No 66
>KOG0933|consensus
Probab=54.41 E-value=94 Score=34.70 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=28.6
Q ss_pred ceEEEecCHHHHHHHHhcCcccccccccCCCCCCCC
Q psy8840 79 LQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSR 114 (355)
Q Consensus 79 l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSR 114 (355)
|-.|.|.+.+-...+|..|...|++.--.+|.-.|+
T Consensus 548 LynvVv~te~tgkqLLq~g~l~rRvTiIPLnKI~s~ 583 (1174)
T KOG0933|consen 548 LYNVVVDTEDTGKQLLQRGNLRRRVTIIPLNKIQSF 583 (1174)
T ss_pred ceeEEeechHHHHHHhhcccccceeEEEechhhhhc
Confidence 556788888889999999999998877777766554
No 67
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=53.10 E-value=1e+02 Score=33.26 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8840 322 QEVESKQKAIEAEKKYTEELAKRINSMES 350 (355)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~e~ 350 (355)
.++|..+..+.+..+++.+|..||..+-.
T Consensus 629 rq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 629 RQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555556666788888888887643
No 68
>KOG0804|consensus
Probab=52.94 E-value=1.5e+02 Score=30.22 Aligned_cols=13 Identities=15% Similarity=0.506 Sum_probs=8.2
Q ss_pred CceeEEEEEEEEe
Q psy8840 114 RSHAIFIITIEMS 126 (355)
Q Consensus 114 RSH~if~i~v~~~ 126 (355)
--|++|...|+..
T Consensus 147 ~Chll~V~~ve~~ 159 (493)
T KOG0804|consen 147 VCHLLYVDRVEVT 159 (493)
T ss_pred ceeEEEEEEEEEE
Confidence 4577777666544
No 69
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=52.93 E-value=77 Score=28.04 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8840 316 EKQKLLQEVESKQKAIEAEKKYTEELAKRINSMES 350 (355)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~ 350 (355)
+..+..+++++.++++++.+.+.+.|.+..+.++.
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445566677777777777777777777776653
No 70
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=52.91 E-value=1.9e+02 Score=27.99 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhh
Q psy8840 336 KYTEELAKRINSMESK 351 (355)
Q Consensus 336 ~~~~~l~~~~~~~e~~ 351 (355)
.+...|..++..+|..
T Consensus 271 ~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 271 KEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666777777776653
No 71
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=52.40 E-value=1.5e+02 Score=28.65 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q psy8840 254 ALLREYQEEIQRLKNLLNQRT 274 (355)
Q Consensus 254 ~~~~~l~~ei~~Lk~~l~~~~ 274 (355)
.-++.++.|+..|+.+.....
T Consensus 167 ~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 167 EKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 445667788888887665444
No 72
>KOG0995|consensus
Probab=52.34 E-value=2e+02 Score=30.12 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHh
Q psy8840 336 KYTEELAKRINSMES 350 (355)
Q Consensus 336 ~~~~~l~~~~~~~e~ 350 (355)
.++++|..-+..++.
T Consensus 339 ~Er~~l~r~l~~i~~ 353 (581)
T KOG0995|consen 339 LERNKLKRELNKIQS 353 (581)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555554444
No 73
>KOG0250|consensus
Probab=51.18 E-value=1e+02 Score=34.62 Aligned_cols=14 Identities=21% Similarity=0.083 Sum_probs=7.0
Q ss_pred HHHHHhcCcccccc
Q psy8840 90 IEQVMQNGNFNRTI 103 (355)
Q Consensus 90 ~~~ll~~g~~~R~~ 103 (355)
++..|..|.-.|..
T Consensus 78 IltAl~lglG~rAs 91 (1074)
T KOG0250|consen 78 ILTALTLGLGGRAS 91 (1074)
T ss_pred HHHHHHHhhccccc
Confidence 44555555555443
No 74
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=50.57 E-value=71 Score=31.14 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=18.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhcc
Q psy8840 250 DPKEALLREYQEEIQRLKNLLNQRT 274 (355)
Q Consensus 250 ~~~~~~~~~l~~ei~~Lk~~l~~~~ 274 (355)
...+.++.++++|.+.|+.+|+...
T Consensus 130 q~LE~li~~~~EEn~~lqlqL~~l~ 154 (401)
T PF06785_consen 130 QHLEGLIRHLREENQCLQLQLDALQ 154 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4456778888888888887776544
No 75
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=49.70 E-value=2.3e+02 Score=26.78 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=11.7
Q ss_pred CCCHHHHHHHHH--HHHHhccCc
Q psy8840 222 SYNYEESLTTLR--YANRAKNIK 242 (355)
Q Consensus 222 ~~~~~eTlsTL~--fa~rak~I~ 242 (355)
..++...+.-++ |...+.+.+
T Consensus 164 ~~dL~~~L~eiR~~ye~~~~~~~ 186 (312)
T PF00038_consen 164 SSDLSAALREIRAQYEEIAQKNR 186 (312)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhHHHHHHHHHhhhh
Confidence 345777777775 666665544
No 76
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=48.06 E-value=1.6e+02 Score=24.37 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=12.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHh
Q psy8840 248 NEDPKEALLREYQEEIQRLKNLLN 271 (355)
Q Consensus 248 n~~~~~~~~~~l~~ei~~Lk~~l~ 271 (355)
+..|...++..|...|.++..++.
T Consensus 10 ~~~~~~~~ve~L~s~lr~~E~E~~ 33 (120)
T PF12325_consen 10 SGGPSVQLVERLQSQLRRLEGELA 33 (120)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555443
No 77
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=47.72 E-value=80 Score=25.28 Aligned_cols=14 Identities=43% Similarity=0.570 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q psy8840 332 EAEKKYTEELAKRI 345 (355)
Q Consensus 332 ~~~~~~~~~l~~~~ 345 (355)
+..+++.++|++.|
T Consensus 86 ~~~~k~i~~le~~I 99 (100)
T PF04568_consen 86 EHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 33445555555544
No 78
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=47.69 E-value=1e+02 Score=25.94 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8840 314 DAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSMESKL 352 (355)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 352 (355)
+-||..|...+...+.+...++..++.|..+|+.||..+
T Consensus 24 eiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aL 62 (134)
T PF08232_consen 24 EIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYAL 62 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555566666666667777777888777654
No 79
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=46.87 E-value=1.1e+02 Score=22.42 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8840 321 LQEVESKQKAIEAEKKYTEELAKRINSMES 350 (355)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~ 350 (355)
..+-......++......+.+-.++.+||.
T Consensus 34 ~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 34 REERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 333333444455566778888888888874
No 80
>KOG2751|consensus
Probab=46.61 E-value=3.3e+02 Score=27.60 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=35.4
Q ss_pred cccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHHHHHHHhccCccccccCCCc-----hHHHHHHHHHHHH
Q psy8840 190 HVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNEDP-----KEALLREYQEEIQ 264 (355)
Q Consensus 190 ~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~~-----~~~~~~~l~~ei~ 264 (355)
..|||++-.-+=. .+-...|++-+ .+..+-.+|..-+.++..|-..-.-+..| .+.++..+.+|+.
T Consensus 83 ~~p~r~~~~~~~~--------~~~~~~~~~~~-~~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~ 153 (447)
T KOG2751|consen 83 SPPVRDSDTEHNL--------SFELGENGSDG-SNTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVE 153 (447)
T ss_pred cCccccccccccc--------ccccccccchh-hhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHH
Confidence 3588886444433 33333333322 23333334555555665554333333322 3556666666666
Q ss_pred HHHHHHh
Q psy8840 265 RLKNLLN 271 (355)
Q Consensus 265 ~Lk~~l~ 271 (355)
.+..+.+
T Consensus 154 ~~~~e~~ 160 (447)
T KOG2751|consen 154 DAEDEVD 160 (447)
T ss_pred HHHHHHH
Confidence 6665543
No 81
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=46.43 E-value=4.9e+02 Score=29.72 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q psy8840 255 LLREYQEEIQRLKNLLNQRT 274 (355)
Q Consensus 255 ~~~~l~~ei~~Lk~~l~~~~ 274 (355)
+-+.|+.+|...|.+|+...
T Consensus 1064 Is~eLReQIq~~KQ~LesLQ 1083 (1439)
T PF12252_consen 1064 ISSELREQIQSVKQDLESLQ 1083 (1439)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44678888888888876544
No 82
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=46.38 E-value=23 Score=31.06 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8840 315 AEKQKLLQEVESKQKAIEAEKKYTEELAKRIN 346 (355)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (355)
+||+.|..++|..++|+...|+|. .+++|+.
T Consensus 24 dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 24 DEKENLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHHHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 556666666666666666666555 4444443
No 83
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=45.98 E-value=3e+02 Score=27.87 Aligned_cols=22 Identities=32% Similarity=0.367 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8840 328 QKAIEAEKKYTEELAKRINSME 349 (355)
Q Consensus 328 ~~~~~~~~~~~~~l~~~~~~~e 349 (355)
++.++..+.....|.+.|..+|
T Consensus 223 q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 223 QKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 3333333334444444444444
No 84
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=45.97 E-value=1.1e+02 Score=30.33 Aligned_cols=11 Identities=45% Similarity=0.631 Sum_probs=8.6
Q ss_pred cCCCCcccccc
Q psy8840 192 PYRDSKLTRLL 202 (355)
Q Consensus 192 PyRdSkLT~lL 202 (355)
-||||-+-|.|
T Consensus 240 lWRDSii~R~L 250 (442)
T PF06637_consen 240 LWRDSIIPRSL 250 (442)
T ss_pred HHHHHHHhhhh
Confidence 48888888877
No 85
>KOG0977|consensus
Probab=45.81 E-value=1.9e+02 Score=30.31 Aligned_cols=92 Identities=21% Similarity=0.270 Sum_probs=43.3
Q ss_pred cchHHHHhhhhhhHHHHHHHHHHhCCCCCcccCCCCcccc---cccccCCCCc-eEEEEEecCCCCCCHHHHHHHHHHHH
Q psy8840 161 KRLKEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTR---LLQDSLGGNS-KTLMIANIGPASYNYEESLTTLRYAN 236 (355)
Q Consensus 161 ~~~~E~~~IN~SL~~L~~vI~aL~~~~~~~iPyRdSkLT~---lL~dsLgGns-kt~mI~~vsp~~~~~~eTlsTL~fa~ 236 (355)
.|.+|-..|-.==.-|+..|..... .--.+++|+. +|++.+|+.+ .+ ..-|+.-+.|++=+-
T Consensus 36 sR~rEK~El~~LNDRLA~YIekVR~-----LEaqN~~L~~di~~lr~~~~~~ts~i---------k~~ye~El~~ar~~l 101 (546)
T KOG0977|consen 36 SREREKKELQELNDRLAVYIEKVRF-----LEAQNRKLEHDINLLRGVVGRETSGI---------KAKYEAELATARKLL 101 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhccCCCcch---------hHHhhhhHHHHHHHH
Confidence 3444444443333445555554421 1223456663 7888888762 21 123454455544221
Q ss_pred -HhccCccccccCCCchHHHHHHHHHHHHHHHHHHhhc
Q psy8840 237 -RAKNIKNQPRVNEDPKEALLREYQEEIQRLKNLLNQR 273 (355)
Q Consensus 237 -rak~I~n~~~~n~~~~~~~~~~l~~ei~~Lk~~l~~~ 273 (355)
.+.+ .....+..+..++.|+..|+..+...
T Consensus 102 ~e~~~-------~ra~~e~ei~kl~~e~~elr~~~~~~ 132 (546)
T KOG0977|consen 102 DETAR-------ERAKLEIEITKLREELKELRKKLEKA 132 (546)
T ss_pred HHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 0000 00112344667777777777766544
No 86
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.37 E-value=54 Score=26.22 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy8840 322 QEVESKQKAIEAEKKYTEELAKRINSMESKLL 353 (355)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~ 353 (355)
++.+.+.+.+-+.+.+.+.|+.|+..||.++-
T Consensus 59 EEFdvq~qvl~rtR~kl~~Leari~~LEarl~ 90 (103)
T COG2960 59 EEFDVQRQVLLRTREKLAALEARIEELEARLA 90 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666777778888899999999999999873
No 87
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=43.66 E-value=2.9e+02 Score=26.63 Aligned_cols=17 Identities=12% Similarity=0.370 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy8840 255 LLREYQEEIQRLKNLLN 271 (355)
Q Consensus 255 ~~~~l~~ei~~Lk~~l~ 271 (355)
.++.++.++..+.....
T Consensus 78 s~r~lk~~l~evEekyr 94 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYR 94 (302)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45556666666665554
No 88
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=43.13 E-value=2.6e+02 Score=25.37 Aligned_cols=21 Identities=5% Similarity=0.292 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy8840 253 EALLREYQEEIQRLKNLLNQR 273 (355)
Q Consensus 253 ~~~~~~l~~ei~~Lk~~l~~~ 273 (355)
+..+++++..+...+..+...
T Consensus 30 ~q~irem~~~l~~ar~~lA~~ 50 (219)
T TIGR02977 30 RLIIQEMEDTLVEVRTTSART 50 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777776543
No 89
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=41.54 E-value=2.9e+02 Score=25.60 Aligned_cols=8 Identities=38% Similarity=0.563 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy8840 261 EEIQRLKN 268 (355)
Q Consensus 261 ~ei~~Lk~ 268 (355)
.+...|+.
T Consensus 34 ~~~~~l~~ 41 (302)
T PF10186_consen 34 EENEELRR 41 (302)
T ss_pred HHHHHHHH
Confidence 33333333
No 90
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=41.32 E-value=3.9e+02 Score=28.00 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=7.2
Q ss_pred EEEeecCCCCcc
Q psy8840 141 KLNLVDLAGSER 152 (355)
Q Consensus 141 ~L~~VDLAGsEr 152 (355)
.++.||=.|.=+
T Consensus 91 qfcYv~~~g~V~ 102 (546)
T PF07888_consen 91 QFCYVDQKGEVR 102 (546)
T ss_pred EEEEECCCccEE
Confidence 356777666543
No 91
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=41.26 E-value=3.1e+02 Score=25.87 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8840 319 KLLQEVESKQKAIEAEKKYTEELAKRINSMES 350 (355)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~ 350 (355)
.+-.++....+.+.........|+.++..|+.
T Consensus 100 ~le~el~~lrk~ld~~~~~r~~le~~i~~L~e 131 (312)
T PF00038_consen 100 DLEEELESLRKDLDEETLARVDLENQIQSLKE 131 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHH
Confidence 34444555555555555555555555555544
No 92
>PRK10698 phage shock protein PspA; Provisional
Probab=40.78 E-value=2.9e+02 Score=25.26 Aligned_cols=21 Identities=5% Similarity=0.292 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy8840 253 EALLREYQEEIQRLKNLLNQR 273 (355)
Q Consensus 253 ~~~~~~l~~ei~~Lk~~l~~~ 273 (355)
+..+++++..+..++..+...
T Consensus 30 ~q~i~em~~~l~~~r~alA~~ 50 (222)
T PRK10698 30 RLMIQEMEDTLVEVRSTSARA 50 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777766543
No 93
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=40.74 E-value=3.1e+02 Score=28.32 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy8840 254 ALLREYQEEIQRLKNLLN 271 (355)
Q Consensus 254 ~~~~~l~~ei~~Lk~~l~ 271 (355)
..+.++++++..|+.++.
T Consensus 71 ~~~~~l~~~l~~l~~~~~ 88 (525)
T TIGR02231 71 ERLAELRKQIRELEAELR 88 (525)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345556666666665554
No 94
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=40.40 E-value=1.7e+02 Score=24.58 Aligned_cols=31 Identities=45% Similarity=0.498 Sum_probs=18.9
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHHHHHhh
Q psy8840 242 KNQPRVNEDPKEALLREYQEEIQRLKNLLNQ 272 (355)
Q Consensus 242 ~n~~~~n~~~~~~~~~~l~~ei~~Lk~~l~~ 272 (355)
.-+.++.+..++.+..+|++.+..+..+|.+
T Consensus 8 ~VK~ivTe~~K~~l~~~l~~~i~~~d~el~Q 38 (131)
T PF11068_consen 8 TVKAIVTEKWKEELLQELQEQIQQLDQELQQ 38 (131)
T ss_dssp EEEEE--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556677777777777777776654
No 95
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=40.29 E-value=2.8e+02 Score=24.93 Aligned_cols=21 Identities=19% Similarity=0.484 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy8840 253 EALLREYQEEIQRLKNLLNQR 273 (355)
Q Consensus 253 ~~~~~~l~~ei~~Lk~~l~~~ 273 (355)
+..|++++..+..++..+...
T Consensus 29 ~q~ird~e~~l~~a~~~~a~~ 49 (221)
T PF04012_consen 29 EQAIRDMEEQLRKARQALARV 49 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777766543
No 96
>KOG1853|consensus
Probab=40.14 E-value=3.2e+02 Score=25.70 Aligned_cols=8 Identities=38% Similarity=0.447 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy8840 260 QEEIQRLK 267 (355)
Q Consensus 260 ~~ei~~Lk 267 (355)
+.++++|+
T Consensus 65 ~t~nqrl~ 72 (333)
T KOG1853|consen 65 ETRNQRLT 72 (333)
T ss_pred HHHHHHHH
Confidence 33333333
No 97
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=40.09 E-value=3e+02 Score=27.26 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcc
Q psy8840 252 KEALLREYQEEIQRLKNLLNQRT 274 (355)
Q Consensus 252 ~~~~~~~l~~ei~~Lk~~l~~~~ 274 (355)
...-+.+|+.|+.+|+.++....
T Consensus 92 ~~~kl~RL~~Ev~EL~eEl~~~~ 114 (388)
T PF04912_consen 92 PEQKLQRLRREVEELKEELEKRK 114 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788999999999887654
No 98
>KOG1962|consensus
Probab=40.00 E-value=1.4e+02 Score=27.33 Aligned_cols=26 Identities=42% Similarity=0.537 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8840 319 KLLQEVESKQKAIEAEKKYTEELAKR 344 (355)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (355)
.+.++++++.++++..+....+|.+.
T Consensus 162 kL~~el~~~~~~Le~~~~~~~al~Kq 187 (216)
T KOG1962|consen 162 KLETELEKKQKKLEKAQKKVDALKKQ 187 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 99
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=39.62 E-value=1.4e+02 Score=22.00 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8840 318 QKLLQEVESKQKAIEAEKKYTEELAKRINSME 349 (355)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e 349 (355)
..|-+.+-++.++|...+.....|.+|+..++
T Consensus 21 e~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 21 EELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555666666666667777777777665
No 100
>KOG0982|consensus
Probab=39.40 E-value=4.2e+02 Score=26.90 Aligned_cols=14 Identities=7% Similarity=0.088 Sum_probs=6.5
Q ss_pred cCHHHHHHHHhcCc
Q psy8840 85 KNVKEIEQVMQNGN 98 (355)
Q Consensus 85 ~s~~e~~~ll~~g~ 98 (355)
.++.+.++.+..++
T Consensus 77 nsfp~~yse~r~~n 90 (502)
T KOG0982|consen 77 NSFPKRYSELRERN 90 (502)
T ss_pred ccchHHHHHHhcCC
Confidence 34445555554443
No 101
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=38.99 E-value=1.8e+02 Score=27.69 Aligned_cols=11 Identities=45% Similarity=0.576 Sum_probs=5.1
Q ss_pred HHHHHHHHHHh
Q psy8840 261 EEIQRLKNLLN 271 (355)
Q Consensus 261 ~ei~~Lk~~l~ 271 (355)
.||.+||.+|.
T Consensus 89 tEI~eLksQL~ 99 (305)
T PF15290_consen 89 TEIDELKSQLA 99 (305)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 102
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=38.52 E-value=1.7e+02 Score=25.06 Aligned_cols=6 Identities=17% Similarity=0.141 Sum_probs=2.3
Q ss_pred HHHhcc
Q psy8840 235 ANRAKN 240 (355)
Q Consensus 235 a~rak~ 240 (355)
..++..
T Consensus 3 ~~~l~~ 8 (160)
T PF13094_consen 3 LRRLAR 8 (160)
T ss_pred HhhCCC
Confidence 334433
No 103
>KOG1029|consensus
Probab=38.46 E-value=1.6e+02 Score=32.10 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=10.6
Q ss_pred CCchHHHHHHHHHHhhhc
Q psy8840 16 KGVIPNSFDQIFSHIART 33 (355)
Q Consensus 16 ~GIipra~~~lF~~i~~~ 33 (355)
.|+=+..+..|+....-+
T Consensus 44 S~LP~~VLaqIWALsDld 61 (1118)
T KOG1029|consen 44 SGLPTPVLAQIWALSDLD 61 (1118)
T ss_pred cCCChHHHHHHHHhhhcC
Confidence 366666677776554433
No 104
>KOG4196|consensus
Probab=38.37 E-value=2.4e+02 Score=23.70 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=31.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8840 311 HLSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSMESK 351 (355)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 351 (355)
+.++.++..|.+++++...++.....+...+..|..++-.-
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566777788888888888888888888888888777554
No 105
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=38.28 E-value=66 Score=22.08 Aligned_cols=17 Identities=24% Similarity=0.602 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhhc
Q psy8840 337 YTEELAKRINSMESKLL 353 (355)
Q Consensus 337 ~~~~l~~~~~~~e~~~~ 353 (355)
..+++.+|++.+|.+++
T Consensus 31 kL~~vs~RLe~LEn~~~ 47 (47)
T PF10393_consen 31 KLDAVSKRLEALENRLV 47 (47)
T ss_dssp HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhccC
Confidence 46778888888888764
No 106
>PRK02224 chromosome segregation protein; Provisional
Probab=38.21 E-value=2.5e+02 Score=30.91 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHh
Q psy8840 256 LREYQEEIQRLKNLLN 271 (355)
Q Consensus 256 ~~~l~~ei~~Lk~~l~ 271 (355)
...++..+..++.+|.
T Consensus 182 ~~~~~~~~~~~~~~l~ 197 (880)
T PRK02224 182 LSDQRGSLDQLKAQIE 197 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 107
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=37.84 E-value=1.1e+02 Score=33.10 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy8840 331 IEAEKKYTEELAKRINSMESKL 352 (355)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~e~~~ 352 (355)
|.++-+++.++-++++.+.+.+
T Consensus 694 L~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 694 LKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3334456666777777766554
No 108
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=37.74 E-value=1.3e+02 Score=30.49 Aligned_cols=67 Identities=22% Similarity=0.373 Sum_probs=45.4
Q ss_pred HHHHHHHHhccCccccccCCCchHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHhHHHHHHHHHHHHHHHHHHHH
Q psy8840 230 TTLRYANRAKNIKNQPRVNEDPKEALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNEEEDKLNNKRKRIM 307 (355)
Q Consensus 230 sTL~fa~rak~I~n~~~~n~~~~~~~~~~l~~ei~~Lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (355)
-.|+|.++.+-++++|+.+.-.-+.-+.+|+..|.+|+..-... . ....+++..+++++.++.+++-
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~l~fe~pi~ele~ki~el~~~~~~~----~-------~~~~~ei~~l~~~~~~~~~~i~ 122 (431)
T PLN03230 56 GALKILNRFKPLKNKPKPVTLPFEKPIVDLENRIDEVRELANKT----G-------VDFSAQIAELEERYDQVRRELY 122 (431)
T ss_pred cHHHHHHhcCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhcc----c-------ccHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999887767777888888888887643211 0 1123445566666666655444
No 109
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=37.62 E-value=3.4e+02 Score=25.25 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy8840 258 EYQEEIQRLKNLL 270 (355)
Q Consensus 258 ~l~~ei~~Lk~~l 270 (355)
+++.+|..++.++
T Consensus 63 ~~e~ei~~~r~r~ 75 (239)
T COG1579 63 QLESEIQEIRERI 75 (239)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 110
>PRK00846 hypothetical protein; Provisional
Probab=37.43 E-value=1.8e+02 Score=22.08 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8840 316 EKQKLLQEVESKQKAIEAEKKYTEELAKRINSMESKL 352 (355)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 352 (355)
.-..|-+.+-++++.+...+.....|.+|++.++...
T Consensus 28 tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 28 ALTELSEALADARLTGARNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3344555666677778887888888999999988654
No 111
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=36.15 E-value=2.7e+02 Score=26.74 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8840 325 ESKQKAIEAEKKYTEELAKRINSMESK 351 (355)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~e~~ 351 (355)
-...-.++++++-.+.|+..+.++=++
T Consensus 73 t~L~SkLe~EKq~kerLEtEiES~rsR 99 (305)
T PF14915_consen 73 TMLNSKLEKEKQNKERLETEIESYRSR 99 (305)
T ss_pred HHHhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334445556666666666666655443
No 112
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.84 E-value=2e+02 Score=27.19 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=12.6
Q ss_pred chHHHHHHHHHHHHHHHHHHh
Q psy8840 251 PKEALLREYQEEIQRLKNLLN 271 (355)
Q Consensus 251 ~~~~~~~~l~~ei~~Lk~~l~ 271 (355)
..+..+..++++...+..+++
T Consensus 35 ~~ds~l~~~~~~~~~~q~ei~ 55 (265)
T COG3883 35 NQDSKLSELQKEKKNIQNEIE 55 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666654
No 113
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.80 E-value=3.9e+02 Score=27.48 Aligned_cols=7 Identities=14% Similarity=0.444 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy8840 258 EYQEEIQ 264 (355)
Q Consensus 258 ~l~~ei~ 264 (355)
+++.+++
T Consensus 70 ~~r~~~~ 76 (472)
T TIGR03752 70 ELRKRLA 76 (472)
T ss_pred HHHHHHH
Confidence 3333333
No 114
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=35.66 E-value=3.4e+02 Score=24.62 Aligned_cols=25 Identities=12% Similarity=0.421 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q psy8840 329 KAIEAEKKYTEELAKRINSMESKLL 353 (355)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~e~~~~ 353 (355)
.++-..+....+|+.+|+.|+.+|+
T Consensus 129 eel~~a~~K~qemE~RIK~LhaqI~ 153 (205)
T PF12240_consen 129 EELHMANRKCQEMENRIKALHAQIA 153 (205)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 4444456677788888888888775
No 115
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=35.21 E-value=2.7e+02 Score=23.28 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8840 323 EVESKQKAIEAEKKYTEELAKRINSMES 350 (355)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~e~ 350 (355)
.+++-..++.....-...|+.||..+|.
T Consensus 97 dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 97 DVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444455555555555554
No 116
>KOG4673|consensus
Probab=35.19 E-value=2.5e+02 Score=30.26 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8840 321 LQEVESKQKAIEAEKKYTEELAKRINSMESKL 352 (355)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 352 (355)
.+.+++.+.++..++.+.-.+...+..+|.+.
T Consensus 522 ~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~ 553 (961)
T KOG4673|consen 522 QETIEKHQAELTRQKDYYSNSRALAAALEAQA 553 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34444555555555555555555555555543
No 117
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=35.08 E-value=2.8e+02 Score=29.05 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=10.9
Q ss_pred HHHhhhhhhHHHHHHHHHH
Q psy8840 165 EASKINLSLSALGNVISAL 183 (355)
Q Consensus 165 E~~~IN~SL~~L~~vI~aL 183 (355)
....+...+..|...+..+
T Consensus 199 ~l~~l~~~~~~l~~~~~~i 217 (569)
T PRK04778 199 ILDQLEEELAALEQIMEEI 217 (569)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666554
No 118
>KOG0996|consensus
Probab=34.76 E-value=3.2e+02 Score=31.34 Aligned_cols=11 Identities=9% Similarity=0.519 Sum_probs=7.7
Q ss_pred cCHHHHHHHHh
Q psy8840 85 KNVKEIEQVMQ 95 (355)
Q Consensus 85 ~s~~e~~~ll~ 95 (355)
.|..++..+|.
T Consensus 206 as~~~V~~lLk 216 (1293)
T KOG0996|consen 206 ASFKDVTKLLK 216 (1293)
T ss_pred ccHHHHHHHHH
Confidence 46777777773
No 119
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=34.68 E-value=3.8e+02 Score=24.89 Aligned_cols=81 Identities=23% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Q psy8840 253 EALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNEEEDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIE 332 (355)
Q Consensus 253 ~~~~~~l~~ei~~Lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (355)
...+.+++.+..+.+..| ..-.+....++...+.+......+......+.++.+.......
T Consensus 11 e~rL~q~eee~~~a~~~L-------------------~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~ 71 (246)
T PF00769_consen 11 EERLRQMEEEMRRAQEAL-------------------EESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAE 71 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q psy8840 333 AEKKYTEELAKRINSMESKL 352 (355)
Q Consensus 333 ~~~~~~~~l~~~~~~~e~~~ 352 (355)
....+++.|..++..++..+
T Consensus 72 ~~~eEk~~Le~e~~e~~~~i 91 (246)
T PF00769_consen 72 MQEEEKEQLEQELREAEAEI 91 (246)
T ss_dssp ---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 120
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=34.12 E-value=3.2e+02 Score=23.83 Aligned_cols=23 Identities=13% Similarity=0.335 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8840 327 KQKAIEAEKKYTEELAKRINSME 349 (355)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~~~~~e 349 (355)
....+.........+.+++...+
T Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 163 LRSQLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444443
No 121
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=33.73 E-value=4.2e+02 Score=25.11 Aligned_cols=28 Identities=32% Similarity=0.344 Sum_probs=14.8
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHHh
Q psy8840 244 QPRVNEDPKEALLREYQEEIQRLKNLLN 271 (355)
Q Consensus 244 ~~~~n~~~~~~~~~~l~~ei~~Lk~~l~ 271 (355)
.|.+-....+-++.-.++++.++..+|+
T Consensus 75 ~peii~~n~~VL~~lgkeelqkl~~eLe 102 (268)
T PF11802_consen 75 TPEIIPLNPEVLLTLGKEELQKLISELE 102 (268)
T ss_pred CCCcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444334444555555666666666653
No 122
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=32.81 E-value=4.3e+02 Score=25.01 Aligned_cols=36 Identities=14% Similarity=0.359 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Q psy8840 297 DKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEA 333 (355)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (355)
.+.++++..+..+..+..+.+ .+...+..+..++.+
T Consensus 110 ~KnekLke~LerEq~wL~Eqq-ql~~sL~~r~~elk~ 145 (268)
T PF11802_consen 110 SKNEKLKEDLEREQQWLDEQQ-QLLESLNKRHEELKN 145 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 333333333333333332222 344444444444444
No 123
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=32.67 E-value=4.4e+02 Score=29.72 Aligned_cols=17 Identities=6% Similarity=0.241 Sum_probs=8.8
Q ss_pred ceEEEecCHHHHHHHHh
Q psy8840 79 LQSYICKNVKEIEQVMQ 95 (355)
Q Consensus 79 l~~~~v~s~~e~~~ll~ 95 (355)
+..+.|.+.+++..++.
T Consensus 549 l~~ivv~~~~~a~~~i~ 565 (1164)
T TIGR02169 549 LNNVVVEDDAVAKEAIE 565 (1164)
T ss_pred hCCEEECCHHHHHHHHH
Confidence 44455666555544443
No 124
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=32.10 E-value=3.7e+02 Score=23.92 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHhC
Q psy8840 173 LSALGNVISALVD 185 (355)
Q Consensus 173 L~~L~~vI~aL~~ 185 (355)
..+...|+.+|.+
T Consensus 29 ~~~VKdvlq~LvD 41 (188)
T PF03962_consen 29 SMSVKDVLQSLVD 41 (188)
T ss_pred hhhHHHHHHHHhc
Confidence 3567778888877
No 125
>KOG2991|consensus
Probab=32.01 E-value=3.1e+02 Score=25.91 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=14.7
Q ss_pred cccCCCCcccccccccCCC
Q psy8840 190 HVPYRDSKLTRLLQDSLGG 208 (355)
Q Consensus 190 ~iPyRdSkLT~lL~dsLgG 208 (355)
+||--.++-||||-|.+.|
T Consensus 94 ~v~a~e~~~~rll~d~i~n 112 (330)
T KOG2991|consen 94 YVQALEGKYTRLLSDDITN 112 (330)
T ss_pred HHHHhcCcccchhHHHHHh
Confidence 6777777889999888754
No 126
>KOG0980|consensus
Probab=32.01 E-value=6.2e+02 Score=28.16 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=17.9
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHh
Q psy8840 247 VNEDPKEALLREYQEEIQRLKNLLN 271 (355)
Q Consensus 247 ~n~~~~~~~~~~l~~ei~~Lk~~l~ 271 (355)
.+.++.+..+.++..|++.++.++.
T Consensus 326 sqkd~~~~~~~~~~~e~~~~~~~l~ 350 (980)
T KOG0980|consen 326 SQKDPRELQIEQLSREVAQLKAQLE 350 (980)
T ss_pred ccCChhhHHHHHHHHHHHHHhhhhh
Confidence 3346667777888888888877765
No 127
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=31.82 E-value=3.3e+02 Score=23.77 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHh
Q psy8840 258 EYQEEIQRLKNLLN 271 (355)
Q Consensus 258 ~l~~ei~~Lk~~l~ 271 (355)
.++..+..||.++.
T Consensus 55 ~~~a~~~eLr~el~ 68 (177)
T PF07798_consen 55 LFKAAIAELRSELQ 68 (177)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555553
No 128
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=31.68 E-value=3e+02 Score=27.42 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=10.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHH
Q psy8840 312 LSDAEKQKLLQEVESKQKAIEA 333 (355)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~ 333 (355)
....+|..|.++|+.+++++++
T Consensus 353 aLrkerd~L~keLeekkreleq 374 (442)
T PF06637_consen 353 ALRKERDSLAKELEEKKRELEQ 374 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555554
No 129
>PHA02562 46 endonuclease subunit; Provisional
Probab=31.62 E-value=3.6e+02 Score=27.73 Aligned_cols=17 Identities=6% Similarity=0.341 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy8840 255 LLREYQEEIQRLKNLLN 271 (355)
Q Consensus 255 ~~~~l~~ei~~Lk~~l~ 271 (355)
.+..++..+..++..+.
T Consensus 263 ~~~~~~~~l~~~~~~~~ 279 (562)
T PHA02562 263 AAAKIKSKIEQFQKVIK 279 (562)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 130
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=31.45 E-value=55 Score=26.06 Aligned_cols=53 Identities=25% Similarity=0.400 Sum_probs=33.5
Q ss_pred ccccccCCCCceEEEEEecCCCCCCHHHHHHHHHHHHHhccCccccccCCCchHHHHHHHHHHHHHHH
Q psy8840 200 RLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNEDPKEALLREYQEEIQRLK 267 (355)
Q Consensus 200 ~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~~~~~~~~~l~~ei~~Lk 267 (355)
..|.|++|.|-+|-+|+-+.|....- -.-.|.+.++...+++..+-+.-++||
T Consensus 15 k~l~dy~GkNEKtKiivKl~~~g~g~---------------P~REp~isee~qk~mm~~~~rrqEElK 67 (98)
T PF11069_consen 15 KKLSDYIGKNEKTKIIVKLQKRGQGP---------------PPREPVISEEEQKAMMAYYYRRQEELK 67 (98)
T ss_pred CcHHHhcCCCcceeEEEEeccCCCCC---------------CCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999998754210 122455555555566655544444444
No 131
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=31.14 E-value=2.1e+02 Score=26.88 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8840 327 KQKAIEAEKKYTEELAKRINSME 349 (355)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~~~~~e 349 (355)
-...|+++..+..+|+.++..+|
T Consensus 237 ~de~I~rEeeEIreLE~k~~~Lq 259 (259)
T PF08657_consen 237 TDEDIRREEEEIRELERKKRELQ 259 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 35567777788888888887764
No 132
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=30.90 E-value=6.2e+02 Score=29.26 Aligned_cols=30 Identities=17% Similarity=0.326 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy8840 324 VESKQKAIEAEKKYTEELAKRINSMESKLL 353 (355)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~ 353 (355)
-++....+...+++.++++.++..++..|.
T Consensus 506 ~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~ 535 (1201)
T PF12128_consen 506 RDQAEEELRQARRELEELRAQIAELQRQLD 535 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 333444555556677777777877777663
No 133
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=30.19 E-value=3.9e+02 Score=23.71 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q psy8840 259 YQEEIQRLKNLL 270 (355)
Q Consensus 259 l~~ei~~Lk~~l 270 (355)
++.++..|+..+
T Consensus 81 ~~~~i~~l~~~i 92 (188)
T PF03962_consen 81 LEKKIEELEEKI 92 (188)
T ss_pred HHHHHHHHHHHH
Confidence 333344444444
No 134
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=29.85 E-value=3.3e+02 Score=31.41 Aligned_cols=9 Identities=33% Similarity=0.556 Sum_probs=4.3
Q ss_pred hhccccCCc
Q psy8840 51 EIRDLLDKD 59 (355)
Q Consensus 51 ~v~DLL~~~ 59 (355)
.+..+|.|.
T Consensus 529 ~l~~~L~p~ 537 (1201)
T PF12128_consen 529 ELQRQLDPQ 537 (1201)
T ss_pred HHHHhhCCC
Confidence 344555554
No 135
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=29.81 E-value=3.2e+02 Score=24.40 Aligned_cols=33 Identities=33% Similarity=0.374 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8840 319 KLLQEVESKQKAIEAEKKYTEELAKRINSMESK 351 (355)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 351 (355)
.+-...+....++.+.+.+.+.+.+.+..+|.+
T Consensus 149 ~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 149 KLKEKKEAKDKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666667777777777666643
No 136
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=29.06 E-value=5.5e+02 Score=27.18 Aligned_cols=62 Identities=19% Similarity=0.302 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhh
Q psy8840 291 YLNEEEDKLNNKRKRIMN-ENHLSDAEKQKLLQEVESKQKAIE-----AEKKYTEELAKRINSMESKL 352 (355)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~e~~~ 352 (355)
..++.+.-+...+..+.+ ......+++.++.+.+++.++-|. ..++..++|+..+..++.++
T Consensus 528 akN~le~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wL~~~~~~~i~~k~~~L~~~~~~~~~~~ 595 (627)
T PRK00290 528 ARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKGEDKEAIKAKTEELTQASQKLGEAM 595 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444431 123467777777666666555443 23344455555555554443
No 137
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=28.99 E-value=4.2e+02 Score=24.95 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy8840 328 QKAIEAEKKYTEELAKRINSMES 350 (355)
Q Consensus 328 ~~~~~~~~~~~~~l~~~~~~~e~ 350 (355)
.+++...++..++|++.|..|.+
T Consensus 192 ~kei~~~re~i~el~e~I~~L~~ 214 (258)
T PF15397_consen 192 QKEIVQFREEIDELEEEIPQLRA 214 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555554443
No 138
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=28.94 E-value=1.7e+02 Score=21.32 Aligned_cols=26 Identities=42% Similarity=0.509 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8840 323 EVESKQKAIEAEKKYTEELAKRINSM 348 (355)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 348 (355)
++.+.+.++++.+++.+.|++.+..+
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444444443
No 139
>PRK13411 molecular chaperone DnaK; Provisional
Probab=28.76 E-value=2.7e+02 Score=29.73 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhh
Q psy8840 292 LNEEEDKLNNKRKRIMN-ENHLSDAEKQKLLQEVESKQKAIEA-------EKKYTEELAKRINSMESKL 352 (355)
Q Consensus 292 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~e~~~ 352 (355)
.++.+.-+-..+..+.+ ......+++.++.+.+++.+.-|.. .++..++|++.+..+..++
T Consensus 531 kN~lEs~iy~~r~~l~~~~~~~~~~er~~i~~~l~~~~~wL~~~~~~~~~~~~~~~el~~~~~~i~~~~ 599 (653)
T PRK13411 531 KNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLEAALTDPNISLEELKQQLEEFQQALLAIGAEV 599 (653)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444432 2234667777777776666655543 2334445555555544443
No 140
>CHL00094 dnaK heat shock protein 70
Probab=28.68 E-value=5.8e+02 Score=26.98 Aligned_cols=64 Identities=19% Similarity=0.333 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhc
Q psy8840 290 EYLNEEEDKLNNKRKRIMN-ENHLSDAEKQKLLQEVESKQKAIE-----AEKKYTEELAKRINSMESKLL 353 (355)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~e~~~~ 353 (355)
+..++.+.-+-..+..+.+ ......+++.++.+.+++.++-|. ..++..++|+..+..++.++-
T Consensus 529 ~~kn~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~~kl~ 598 (621)
T CHL00094 529 DLKNQAESLCYQAEKQLKELKDKISEEKKEKIENLIKKLRQALQNDNYESIKSLLEELQKALMEIGKEVY 598 (621)
T ss_pred HHHHHhHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445445544432 123457777777777766655443 234555666666666666553
No 141
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=28.65 E-value=1.2e+02 Score=23.41 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q psy8840 323 EVESKQKAIEAEKK 336 (355)
Q Consensus 323 ~~~~~~~~~~~~~~ 336 (355)
+++.+.++|+.++.
T Consensus 19 e~Q~rlK~Le~qk~ 32 (83)
T PF14193_consen 19 ELQARLKELEAQKT 32 (83)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 142
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.48 E-value=3.6e+02 Score=27.76 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q psy8840 333 AEKKYTEELAKRIN 346 (355)
Q Consensus 333 ~~~~~~~~l~~~~~ 346 (355)
....+...|+.+++
T Consensus 108 eLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 108 KLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334445554443
No 143
>COG4499 Predicted membrane protein [Function unknown]
Probab=28.46 E-value=2.5e+02 Score=28.13 Aligned_cols=44 Identities=20% Similarity=0.388 Sum_probs=28.2
Q ss_pred HHHHHHhccCccccccCCCchHHHHHHHHHHHHHHHHHHhhccc
Q psy8840 232 LRYANRAKNIKNQPRVNEDPKEALLREYQEEIQRLKNLLNQRTV 275 (355)
Q Consensus 232 L~fa~rak~I~n~~~~n~~~~~~~~~~l~~ei~~Lk~~l~~~~~ 275 (355)
+-++.+-..|++.-..+.+....+++++.++++++-+.+.+...
T Consensus 347 ~Al~k~~eevksn~~lsg~~r~e~lk~~n~~lqd~~k~~~e~k~ 390 (434)
T COG4499 347 LALTKLYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKD 390 (434)
T ss_pred HHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444555566666666666677777777777777776655443
No 144
>KOG0993|consensus
Probab=28.26 E-value=2.7e+02 Score=28.11 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8840 254 ALLREYQEEIQRLKNLL 270 (355)
Q Consensus 254 ~~~~~l~~ei~~Lk~~l 270 (355)
+..++-+.+|..|+.-+
T Consensus 74 av~rq~~eeVaSlqa~~ 90 (542)
T KOG0993|consen 74 AVVRQEEEEVASLQASQ 90 (542)
T ss_pred HHHHhhccccchhHHHh
Confidence 34455555666665544
No 145
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=28.05 E-value=3.9e+02 Score=23.00 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=17.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhhc
Q psy8840 251 PKEALLREYQEEIQRLKNLLNQR 273 (355)
Q Consensus 251 ~~~~~~~~l~~ei~~Lk~~l~~~ 273 (355)
......+++++|+.+|+.++...
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~i 59 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAI 59 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cccHHHHHHHHHHHHHHHHHHcC
Confidence 34556788999999999998654
No 146
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=27.89 E-value=4.2e+02 Score=24.04 Aligned_cols=14 Identities=43% Similarity=0.586 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q psy8840 330 AIEAEKKYTEELAK 343 (355)
Q Consensus 330 ~~~~~~~~~~~l~~ 343 (355)
.+++..++.++|.+
T Consensus 183 ~LeQK~kEn~ELtk 196 (207)
T PF05010_consen 183 SLEQKTKENEELTK 196 (207)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444443
No 147
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=27.77 E-value=3.1e+02 Score=24.19 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8840 292 LNEEEDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSMESKL 352 (355)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 352 (355)
..+-.+.+++.+..+.+.....++....+.+.+..- +|-+.+.|.+++.++|..||.+|
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsY--qll~hr~e~ee~~~~l~~le~~~ 141 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSY--QLLQHRREMEEMLERLQKLEARL 141 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--HHHHhHHHHHHHHHHHHHHHHHH
No 148
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=27.74 E-value=5.8e+02 Score=25.08 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=16.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhhcc
Q psy8840 248 NEDPKEALLREYQEEIQRLKNLLNQRT 274 (355)
Q Consensus 248 n~~~~~~~~~~l~~ei~~Lk~~l~~~~ 274 (355)
..|...-.++.+.-|...|++++....
T Consensus 27 ~vD~~~LqLqNl~YE~~hL~kEI~~C~ 53 (355)
T PF09766_consen 27 EVDALHLQLQNLLYEKSHLQKEIKKCL 53 (355)
T ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 334444556667777777777776443
No 149
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=27.30 E-value=4.9e+02 Score=29.34 Aligned_cols=8 Identities=25% Similarity=0.571 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q psy8840 87 VKEIEQVM 94 (355)
Q Consensus 87 ~~e~~~ll 94 (355)
..++..++
T Consensus 119 ~~~~~~~l 126 (1164)
T TIGR02169 119 LSEIHDFL 126 (1164)
T ss_pred HHHHHHHH
Confidence 34444433
No 150
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=27.28 E-value=53 Score=19.04 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhhh
Q psy8840 337 YTEELAKRINSMESKL 352 (355)
Q Consensus 337 ~~~~l~~~~~~~e~~~ 352 (355)
+..+|..+|..||+++
T Consensus 2 E~~rlr~rI~dLer~L 17 (23)
T PF04508_consen 2 EMNRLRNRISDLERQL 17 (23)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3456666777777665
No 151
>KOG4348|consensus
Probab=27.25 E-value=2.2e+02 Score=28.94 Aligned_cols=57 Identities=23% Similarity=0.341 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8840 296 EDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSMESKL 352 (355)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 352 (355)
+..++++|.++.+...+.+.-|..--.++++..++|+.++.-+-.|+-.|+.+-..+
T Consensus 568 k~s~delr~qi~el~~ive~lk~~~~kel~kl~~dleeek~mr~~lemei~~lkka~ 624 (627)
T KOG4348|consen 568 KNSLDELRAQIIELLCIVEALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLKKAV 624 (627)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHh
Confidence 345566666666666666666666667778888888887766666665555554443
No 152
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=27.16 E-value=4.2e+02 Score=23.04 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy8840 256 LREYQEEIQRLKNLL 270 (355)
Q Consensus 256 ~~~l~~ei~~Lk~~l 270 (355)
+.++.+|+..+...+
T Consensus 90 l~~l~~el~~l~~~~ 104 (191)
T PF04156_consen 90 LQQLQEELDQLQERI 104 (191)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 153
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=26.92 E-value=6e+02 Score=27.06 Aligned_cols=8 Identities=13% Similarity=0.198 Sum_probs=4.0
Q ss_pred eEEEEEEE
Q psy8840 37 QYLIRASY 44 (355)
Q Consensus 37 ~~~v~vS~ 44 (355)
.+.|.+.|
T Consensus 84 ~~~V~l~f 91 (650)
T TIGR03185 84 PASITLTF 91 (650)
T ss_pred CeEEEEEE
Confidence 44555555
No 154
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=26.33 E-value=2.3e+02 Score=23.02 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhc
Q psy8840 315 AEKQKLLQEVESKQKAI----EAEKKYTEELAKRINSMESKLL 353 (355)
Q Consensus 315 ~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~e~~~~ 353 (355)
++|-++.++|.+.+-+. ++-..+..+|.++|-.+|+.++
T Consensus 3 EeKLqISKeLVDLQIe~~rL~Eq~EaE~FELk~~vL~lE~rvl 45 (108)
T PF14739_consen 3 EEKLQISKELVDLQIETNRLREQHEAEKFELKNEVLRLENRVL 45 (108)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555554443333 2234567778888888887764
No 155
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=26.06 E-value=5.2e+02 Score=23.75 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy8840 254 ALLREYQEEIQRLKNLLNQ 272 (355)
Q Consensus 254 ~~~~~l~~ei~~Lk~~l~~ 272 (355)
..|+..+.++..++..+.+
T Consensus 31 Q~ird~~~~l~~ar~~~A~ 49 (225)
T COG1842 31 QAIRDMESELAKARQALAQ 49 (225)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666666655543
No 156
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=26.05 E-value=2.7e+02 Score=27.32 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHhh
Q psy8840 257 REYQEEIQRLKNLLNQ 272 (355)
Q Consensus 257 ~~l~~ei~~Lk~~l~~ 272 (355)
++|++.+..++.+...
T Consensus 2 ~el~~~~~~~~~~~r~ 17 (378)
T TIGR01554 2 SELKEQREEIVAEIRS 17 (378)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4566666666655543
No 157
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=25.98 E-value=3.2e+02 Score=24.53 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Q psy8840 295 EEDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIE 332 (355)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (355)
++.+......+-.......+.++.+|.+.++.......
T Consensus 121 EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~ 158 (192)
T PF09727_consen 121 EKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQK 158 (192)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334445556666666555554433333
No 158
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=25.79 E-value=7.4e+02 Score=25.95 Aligned_cols=62 Identities=23% Similarity=0.310 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhh
Q psy8840 290 EYLNEEEDKLNNKRKRIMN-ENHLSDAEKQKLLQEVESKQKAIEA-----EKKYTEELAKRINSMESK 351 (355)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~e~~ 351 (355)
+..++++.-+-..+..+.+ .....++++.++.+.+++.++-|.. .++..++|++.+..++.+
T Consensus 525 e~kn~lEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~~~~~wL~~~d~~~i~~~~~~l~~~~~~~~~~ 592 (595)
T TIGR02350 525 EARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKGEDVEEIKAKTEELQQALQKLAEA 592 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444432 2235677777777777666554433 234455555555555544
No 159
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=25.76 E-value=64 Score=33.21 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8840 321 LQEVESKQKAIEAEKKYTEELAKRINSMESK 351 (355)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 351 (355)
++++++.++++++.+++..+|.+++...|.+
T Consensus 30 ~qkie~L~kql~~Lk~q~~~l~~~v~k~e~~ 60 (489)
T PF11853_consen 30 LQKIEALKKQLEELKAQQDDLNDRVDKVEKH 60 (489)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhhHh
Confidence 3355555666666666666777777666654
No 160
>KOG1937|consensus
Probab=25.63 E-value=3.8e+02 Score=27.42 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy8840 289 EEYLNEEEDKLNNKRKRIMN 308 (355)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~ 308 (355)
+.++.+++.++.+...++..
T Consensus 292 eayLaKL~~~l~~~~~~~~~ 311 (521)
T KOG1937|consen 292 EAYLAKLMGKLAELNKQMEE 311 (521)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544
No 161
>PHA02562 46 endonuclease subunit; Provisional
Probab=25.61 E-value=3.7e+02 Score=27.63 Aligned_cols=18 Identities=17% Similarity=0.003 Sum_probs=10.9
Q ss_pred cCHHHHHHHHhcCccccc
Q psy8840 85 KNVKEIEQVMQNGNFNRT 102 (355)
Q Consensus 85 ~s~~e~~~ll~~g~~~R~ 102 (355)
+|.-++..+.-.|...|.
T Consensus 41 Stll~aI~~~l~G~~~~~ 58 (562)
T PHA02562 41 STMLEALTFALFGKPFRD 58 (562)
T ss_pred HHHHHHHHHHHcCCCcCc
Confidence 455666666666765554
No 162
>PRK14127 cell division protein GpsB; Provisional
Probab=25.56 E-value=2e+02 Score=23.35 Aligned_cols=14 Identities=21% Similarity=0.548 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhhh
Q psy8840 339 EELAKRINSMESKL 352 (355)
Q Consensus 339 ~~l~~~~~~~e~~~ 352 (355)
-.+-+||-.||..+
T Consensus 88 ~DiLKRls~LEk~V 101 (109)
T PRK14127 88 YDILKRLSNLEKHV 101 (109)
T ss_pred HHHHHHHHHHHHHH
Confidence 34566666666554
No 163
>KOG2751|consensus
Probab=25.46 E-value=7.3e+02 Score=25.23 Aligned_cols=13 Identities=23% Similarity=0.549 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhhh
Q psy8840 340 ELAKRINSMESKL 352 (355)
Q Consensus 340 ~l~~~~~~~e~~~ 352 (355)
+.+..+.++|.++
T Consensus 243 ~~~del~Sle~q~ 255 (447)
T KOG2751|consen 243 EHQDELDSLEAQI 255 (447)
T ss_pred cccchHHHHHHHH
Confidence 3344444554443
No 164
>PRK11281 hypothetical protein; Provisional
Probab=25.33 E-value=3.7e+02 Score=30.89 Aligned_cols=15 Identities=47% Similarity=0.625 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy8840 254 ALLREYQEEIQRLKN 268 (355)
Q Consensus 254 ~~~~~l~~ei~~Lk~ 268 (355)
+.+++.+++++++++
T Consensus 94 ~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 94 AKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHHHHHHhhc
Confidence 344555555555554
No 165
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=25.28 E-value=6.7e+02 Score=24.77 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy8840 335 KKYTEELAKRINSMESKL 352 (355)
Q Consensus 335 ~~~~~~l~~~~~~~e~~~ 352 (355)
|+....|.+.|..|+=+|
T Consensus 334 KqAl~kLk~EI~qMdvrI 351 (359)
T PF10498_consen 334 KQALTKLKQEIKQMDVRI 351 (359)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 456666666777666554
No 166
>KOG0971|consensus
Probab=25.25 E-value=7.1e+02 Score=27.97 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy8840 256 LREYQEEIQRLKNLLNQR 273 (355)
Q Consensus 256 ~~~l~~ei~~Lk~~l~~~ 273 (355)
+.++.-+++-||.+++..
T Consensus 341 ~deletdlEILKaEmeek 358 (1243)
T KOG0971|consen 341 VDELETDLEILKAEMEEK 358 (1243)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344555566666666554
No 167
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.22 E-value=4.4e+02 Score=22.62 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccCC
Q psy8840 255 LLREYQEEIQRLKNLLNQRTVQP 277 (355)
Q Consensus 255 ~~~~l~~ei~~Lk~~l~~~~~~~ 277 (355)
.+..++.++..|+.+|......+
T Consensus 87 el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 87 ELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 34455555555666665554433
No 168
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.21 E-value=3.6e+02 Score=31.46 Aligned_cols=20 Identities=15% Similarity=0.473 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q psy8840 255 LLREYQEEIQRLKNLLNQRT 274 (355)
Q Consensus 255 ~~~~l~~ei~~Lk~~l~~~~ 274 (355)
.+.++..++..++.++....
T Consensus 793 ~i~r~~~ei~~l~~qie~l~ 812 (1311)
T TIGR00606 793 IMERFQMELKDVERKIAQQA 812 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777766433
No 169
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=25.15 E-value=3.6e+02 Score=21.66 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q psy8840 336 KYTEELAKRINSME 349 (355)
Q Consensus 336 ~~~~~l~~~~~~~e 349 (355)
.+...|...+..++
T Consensus 88 ~~l~~l~~~~~k~e 101 (126)
T PF13863_consen 88 AELEELKSEISKLE 101 (126)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 170
>PRK00295 hypothetical protein; Provisional
Probab=25.14 E-value=2.8e+02 Score=20.35 Aligned_cols=33 Identities=24% Similarity=0.230 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8840 319 KLLQEVESKQKAIEAEKKYTEELAKRINSMESK 351 (355)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 351 (355)
.|-+.+-+++++|...+.....|..++..+++.
T Consensus 23 ~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~~ 55 (68)
T PRK00295 23 ALNDVLVEQQRVIERLQLQMAALIKRQEEMVGQ 55 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444555566666666666777777777777643
No 171
>smart00030 CLb CLUSTERIN Beta chain.
Probab=25.12 E-value=5.2e+02 Score=23.42 Aligned_cols=13 Identities=31% Similarity=0.601 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q psy8840 314 DAEKQKLLQEVES 326 (355)
Q Consensus 314 ~~~~~~~~~~~~~ 326 (355)
.++...|+..|++
T Consensus 42 ~eeh~~ll~tLe~ 54 (206)
T smart00030 42 NKERKSLLSTLEE 54 (206)
T ss_pred hHHHHHHHHHHHH
Confidence 3444444444433
No 172
>PRK03918 chromosome segregation protein; Provisional
Probab=25.00 E-value=8.6e+02 Score=26.63 Aligned_cols=12 Identities=17% Similarity=-0.183 Sum_probs=5.8
Q ss_pred CHHHHHHHHhcC
Q psy8840 86 NVKEIEQVMQNG 97 (355)
Q Consensus 86 s~~e~~~ll~~g 97 (355)
|.-++..+.-.|
T Consensus 38 til~ai~~~l~~ 49 (880)
T PRK03918 38 SILEAILVGLYW 49 (880)
T ss_pred HHHHHHHHHhcC
Confidence 445555554343
No 173
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.94 E-value=4.1e+02 Score=23.33 Aligned_cols=34 Identities=44% Similarity=0.467 Sum_probs=22.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8840 311 HLSDAEKQKLLQEVESKQKAIEAEKKYTEELAKR 344 (355)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (355)
....++-.++.+++++.+.+++..+++.+.|++.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556667777777777777777777766653
No 174
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=24.87 E-value=2.8e+02 Score=24.53 Aligned_cols=8 Identities=25% Similarity=0.692 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy8840 341 LAKRINSM 348 (355)
Q Consensus 341 l~~~~~~~ 348 (355)
+++++..|
T Consensus 158 ~~~~l~~l 165 (176)
T PF12999_consen 158 LEKKLEEL 165 (176)
T ss_pred HHHHHHHH
Confidence 33333333
No 175
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=24.67 E-value=6.1e+02 Score=24.05 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8840 255 LLREYQEEIQRLKNLL 270 (355)
Q Consensus 255 ~~~~l~~ei~~Lk~~l 270 (355)
+-..|.+|+ .++...
T Consensus 136 LydlL~kE~-~lr~~R 150 (267)
T PF10234_consen 136 LYDLLGKEV-ELREER 150 (267)
T ss_pred HHHHHhchH-hHHHHH
Confidence 344455555 445444
No 176
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=24.61 E-value=4.2e+02 Score=22.22 Aligned_cols=11 Identities=36% Similarity=0.362 Sum_probs=7.0
Q ss_pred HhhhhhhHHHH
Q psy8840 167 SKINLSLSALG 177 (355)
Q Consensus 167 ~~IN~SL~~L~ 177 (355)
..||..|.++|
T Consensus 5 ~yiN~~L~s~G 15 (151)
T PF11559_consen 5 EYINQQLLSRG 15 (151)
T ss_pred HHHHHHHHHCC
Confidence 45677776655
No 177
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=24.60 E-value=25 Score=36.23 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q psy8840 255 LLREYQEEIQRLKNLLNQRT 274 (355)
Q Consensus 255 ~~~~l~~ei~~Lk~~l~~~~ 274 (355)
..++|++||..||+.|....
T Consensus 370 ~~e~YEqEI~~LkErL~~S~ 389 (495)
T PF12004_consen 370 EVEKYEQEIQSLKERLRMSH 389 (495)
T ss_dssp --------------------
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 34568999999998886433
No 178
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=24.54 E-value=2.9e+02 Score=20.38 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8840 316 EKQKLLQEVESKQKAIEAEKKYTEELAKRINSM 348 (355)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 348 (355)
++...+..+.....++...+.+.+.|.+.+...
T Consensus 34 ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 34 ERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555555556666666655544
No 179
>KOG0964|consensus
Probab=24.51 E-value=5.1e+02 Score=29.26 Aligned_cols=44 Identities=27% Similarity=0.325 Sum_probs=24.7
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8840 308 NENHLSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSMESK 351 (355)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 351 (355)
.+......++..+.+.++.+.++|+..+...+.++.....+|+-
T Consensus 727 ~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~e 770 (1200)
T KOG0964|consen 727 RELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESE 770 (1200)
T ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33334444555555666666666666666666665555555543
No 180
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=24.42 E-value=2.6e+02 Score=30.73 Aligned_cols=8 Identities=25% Similarity=0.488 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q psy8840 254 ALLREYQE 261 (355)
Q Consensus 254 ~~~~~l~~ 261 (355)
.++..+.+
T Consensus 520 ~li~~l~~ 527 (782)
T PRK00409 520 ELIASLEE 527 (782)
T ss_pred HHHHHHHH
Confidence 33444433
No 181
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=24.31 E-value=4.8e+02 Score=23.02 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8840 328 QKAIEAEKKYTEELAKRI 345 (355)
Q Consensus 328 ~~~~~~~~~~~~~l~~~~ 345 (355)
++.+.+.+++..+|-+|.
T Consensus 164 e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 164 EEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444555555443
No 182
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=24.27 E-value=4.9e+02 Score=24.06 Aligned_cols=7 Identities=14% Similarity=0.306 Sum_probs=3.3
Q ss_pred eEEcCce
Q psy8840 74 VYVKNLQ 80 (355)
Q Consensus 74 ~~v~~l~ 80 (355)
+.|.|.+
T Consensus 11 IiVEGAs 17 (290)
T COG4026 11 IIVEGAS 17 (290)
T ss_pred EEeeccc
Confidence 3455544
No 183
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=24.23 E-value=3.4e+02 Score=23.33 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy8840 254 ALLREYQEEIQRLKNLLN 271 (355)
Q Consensus 254 ~~~~~l~~ei~~Lk~~l~ 271 (355)
..+..+..+|..|+.++.
T Consensus 72 eel~~ld~ei~~L~~el~ 89 (169)
T PF07106_consen 72 EELAELDAEIKELREELA 89 (169)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 345555666666666553
No 184
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=24.04 E-value=9e+02 Score=25.83 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8840 319 KLLQEVESKQKAIEAEKKYTEELAKRINSMESKL 352 (355)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 352 (355)
++++.++.-+..+.+....+.+|.+.+..|+...
T Consensus 143 kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~F 176 (617)
T PF15070_consen 143 KLLEQLQSDKATASRALSQNRELKEQLAELQDAF 176 (617)
T ss_pred HHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444444333344444455666667776666543
No 185
>PRK04325 hypothetical protein; Provisional
Probab=24.03 E-value=3.1e+02 Score=20.47 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8840 318 QKLLQEVESKQKAIEAEKKYTEELAKRINSMESK 351 (355)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 351 (355)
..|-+.+-+++++|...+.....|.+|+..++..
T Consensus 26 e~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~~~ 59 (74)
T PRK04325 26 DGLNATVARQQQTLDLLQAQLRLLYQQMRDANPD 59 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3455556666667777667777777788777643
No 186
>PRK00736 hypothetical protein; Provisional
Probab=23.87 E-value=3e+02 Score=20.20 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8840 319 KLLQEVESKQKAIEAEKKYTEELAKRINSMESK 351 (355)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 351 (355)
.|-+.+-+++++|....+....|.+|+..++..
T Consensus 23 ~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~~ 55 (68)
T PRK00736 23 ELSDQLAEQWKTVEQMRKKLDALTERFLSLEEQ 55 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445555666666666667777777777776643
No 187
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.86 E-value=3.5e+02 Score=21.07 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCcccchhHhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Q psy8840 254 ALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNEEEDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEA 333 (355)
Q Consensus 254 ~~~~~l~~ei~~Lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (355)
..+..++.++..|+..+.......-..+. -..+..++.+++.....+.... ...+.+++...++....
T Consensus 19 ~e~~~L~~~~~~L~~~~R~~~GedL~~Ls------~~eL~~LE~~Le~aL~~VR~rK------~~~l~~~i~~l~~ke~~ 86 (100)
T PF01486_consen 19 QEIAKLRKENESLQKELRHLMGEDLESLS------LKELQQLEQQLESALKRVRSRK------DQLLMEQIEELKKKERE 86 (100)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccc------hHHHHHHHHhhhhhHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 34556667777777666544422211111 2345566666666666665332 11233444444333333
Q ss_pred HHHHHHHHHHHH
Q psy8840 334 EKKYTEELAKRI 345 (355)
Q Consensus 334 ~~~~~~~l~~~~ 345 (355)
...+...|..++
T Consensus 87 l~~en~~L~~~~ 98 (100)
T PF01486_consen 87 LEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHh
Confidence 344555555554
No 188
>KOG0963|consensus
Probab=23.80 E-value=6.7e+02 Score=26.70 Aligned_cols=18 Identities=39% Similarity=0.612 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy8840 335 KKYTEELAKRINSMESKL 352 (355)
Q Consensus 335 ~~~~~~l~~~~~~~e~~~ 352 (355)
....+.+++++..|++.+
T Consensus 195 ~~q~~~le~ki~~lq~a~ 212 (629)
T KOG0963|consen 195 QEQLEELEKKISSLQSAI 212 (629)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666666666554
No 189
>PRK09039 hypothetical protein; Validated
Probab=23.74 E-value=6.9e+02 Score=24.39 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy8840 335 KKYTEELAKRINSMESK 351 (355)
Q Consensus 335 ~~~~~~l~~~~~~~e~~ 351 (355)
++...+.+.+|..++..
T Consensus 164 e~~~~~~~~~i~~L~~~ 180 (343)
T PRK09039 164 EKRDRESQAKIADLGRR 180 (343)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 190
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=23.45 E-value=2.7e+02 Score=23.93 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy8840 290 EYLNEEEDKLNNKRKRIMNE 309 (355)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~ 309 (355)
+.+...+.++...-++|...
T Consensus 27 ~e~~~~k~ql~~~d~~i~~L 46 (155)
T PF06810_consen 27 EERDNLKTQLKEADKQIKDL 46 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555443
No 191
>PHA03158 hypothetical protein; Provisional
Probab=23.44 E-value=1.8e+02 Score=26.17 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8840 313 SDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSMESKL 352 (355)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 352 (355)
..+||..+.+++-+-.+.-.+.-+...+|++.|+++|..+
T Consensus 231 t~~EK~~~~kQllka~kkc~~~s~~~~~leeei~eleks~ 270 (273)
T PHA03158 231 TAKEKAAILKQLLKAAKKCCKNSEHEKELEEEIEELEKSL 270 (273)
T ss_pred cHHHhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhh
Confidence 3455555555544443333333445556667777777654
No 192
>KOG0612|consensus
Probab=23.43 E-value=9.8e+02 Score=27.77 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=9.2
Q ss_pred CCHHHHHHHHHHHHH
Q psy8840 223 YNYEESLTTLRYANR 237 (355)
Q Consensus 223 ~~~~eTlsTL~fa~r 237 (355)
.+++++++.|..+..
T Consensus 584 ~~~~d~l~~le~~k~ 598 (1317)
T KOG0612|consen 584 RDLEDKLSLLEESKS 598 (1317)
T ss_pred ccHHHHHHHHHHHHH
Confidence 356667766666543
No 193
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=23.28 E-value=5.1e+02 Score=26.19 Aligned_cols=28 Identities=11% Similarity=0.178 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8840 321 LQEVESKQKAIEAEKKYTEELAKRINSM 348 (355)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 348 (355)
.+.......++++.+.+..+|++.+..+
T Consensus 381 ~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 381 KEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333334444444444444555555544
No 194
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=23.27 E-value=5.9e+02 Score=23.40 Aligned_cols=13 Identities=15% Similarity=0.371 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHh
Q psy8840 259 YQEEIQRLKNLLN 271 (355)
Q Consensus 259 l~~ei~~Lk~~l~ 271 (355)
++..|...+..|.
T Consensus 29 l~Q~ird~~~~l~ 41 (225)
T COG1842 29 LEQAIRDMESELA 41 (225)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 195
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=22.86 E-value=4.7e+02 Score=26.62 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHh
Q psy8840 295 EEDKLNNKRKRIMN 308 (355)
Q Consensus 295 ~~~~~~~~~~~~~~ 308 (355)
+.++.++.++.++.
T Consensus 31 ~Mek~eeeh~~Lm~ 44 (436)
T PF01093_consen 31 MMEKTEEEHKELMK 44 (436)
T ss_pred HHHhhHHHHHHHHH
Confidence 33333333333333
No 196
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=22.86 E-value=5.1e+02 Score=22.54 Aligned_cols=8 Identities=25% Similarity=0.534 Sum_probs=3.4
Q ss_pred HHHHHHHh
Q psy8840 231 TLRYANRA 238 (355)
Q Consensus 231 TL~fa~ra 238 (355)
|+.|..+.
T Consensus 4 T~~~v~~L 11 (177)
T PF07798_consen 4 THKFVKRL 11 (177)
T ss_pred HHHHHHHH
Confidence 44444443
No 197
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=22.75 E-value=1.1e+02 Score=23.43 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhh
Q psy8840 338 TEELAKRINSMESK 351 (355)
Q Consensus 338 ~~~l~~~~~~~e~~ 351 (355)
...|++.|-.+|..
T Consensus 18 L~~lE~qIy~~Et~ 31 (80)
T PF09340_consen 18 LAALEKQIYDKETS 31 (80)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444455555543
No 198
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=22.67 E-value=7.9e+02 Score=24.68 Aligned_cols=18 Identities=11% Similarity=0.333 Sum_probs=11.1
Q ss_pred cCceEEEecCHHHHHHHH
Q psy8840 77 KNLQSYICKNVKEIEQVM 94 (355)
Q Consensus 77 ~~l~~~~v~s~~e~~~ll 94 (355)
.|++...+.-+-|+..++
T Consensus 114 sg~s~~v~skPrEfA~li 131 (395)
T PF10267_consen 114 SGLSGAVVSKPREFAHLI 131 (395)
T ss_pred cchhHHHHhCcHHHHhcc
Confidence 344445566677777766
No 199
>PRK02119 hypothetical protein; Provisional
Probab=22.65 E-value=3.3e+02 Score=20.29 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8840 318 QKLLQEVESKQKAIEAEKKYTEELAKRINSMESK 351 (355)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 351 (355)
..|-+.+-+++++|...++....|.+++..++..
T Consensus 26 e~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 26 EELNQALIEQQFVIDKMQVQLRYMANKLKDMQPS 59 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3445555566666666667777777777776643
No 200
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=22.62 E-value=9.4e+02 Score=27.67 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=9.9
Q ss_pred ceEEEecC---HHHHHHHHhcCcccc
Q psy8840 79 LQSYICKN---VKEIEQVMQNGNFNR 101 (355)
Q Consensus 79 l~~~~v~s---~~e~~~ll~~g~~~R 101 (355)
+..+.|.+ +..+..+|......|
T Consensus 543 l~~vVV~~~~~a~~~i~~lk~~~~gr 568 (1163)
T COG1196 543 LQAVVVENEEVAKKAIEFLKENKAGR 568 (1163)
T ss_pred cCCeeeCChHHHHHHHHHHhhcCCCc
Confidence 44445554 333444444433333
No 201
>KOG0977|consensus
Probab=22.48 E-value=9.2e+02 Score=25.36 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhh
Q psy8840 257 REYQEEIQRLKNLLNQ 272 (355)
Q Consensus 257 ~~l~~ei~~Lk~~l~~ 272 (355)
+.|..|...|...+..
T Consensus 59 R~LEaqN~~L~~di~~ 74 (546)
T KOG0977|consen 59 RFLEAQNRKLEHDINL 74 (546)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455666666655543
No 202
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=22.43 E-value=4.2e+02 Score=26.41 Aligned_cols=21 Identities=14% Similarity=0.389 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q psy8840 254 ALLREYQEEIQRLKNLLNQRT 274 (355)
Q Consensus 254 ~~~~~l~~ei~~Lk~~l~~~~ 274 (355)
..+..++.++..++.++....
T Consensus 254 ~~i~~l~~~l~~le~~l~~l~ 274 (444)
T TIGR03017 254 PIIQNLKTDIARAESKLAELS 274 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777776543
No 203
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=22.35 E-value=7.2e+02 Score=24.41 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=18.1
Q ss_pred EEEeecCCCCccccCCCccccchHHHHhhhhhhHH-HHHHHHHHhCC
Q psy8840 141 KLNLVDLAGSERQSKTGATGKRLKEASKINLSLSA-LGNVISALVDG 186 (355)
Q Consensus 141 ~L~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~~-L~~vI~aL~~~ 186 (355)
.|.+.|..++=+...+. ..--.++...-.+..- +..+-.+|..+
T Consensus 33 ~i~lTDG~saW~g~vs~--~ei~~~A~~~~~~~~eYv~~l~kaL~~~ 77 (342)
T PF06632_consen 33 DITLTDGQSAWSGTVSE--EEIRQRAKDWDMEVEEYVQELKKALTGQ 77 (342)
T ss_dssp EEEEESSSSEEEEEEEH--HHHHHHHHHTTS-HHHHHHHHHHHHTSS
T ss_pred EEEEecCCCceeeecCH--HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Confidence 46666655543222111 1111233333333332 34466677554
No 204
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=22.31 E-value=4.9e+02 Score=22.12 Aligned_cols=88 Identities=19% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcccCCCCcccchhHhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8840 260 QEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNEEEDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEAEKKYTE 339 (355)
Q Consensus 260 ~~ei~~Lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (355)
++++..|+.++ ......-..+..+..........+...+.+...++........+-...+...-+.+.+..+..+...+
T Consensus 51 k~eie~L~~el-~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve 129 (140)
T PF10473_consen 51 KAEIETLEEEL-EELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAVE 129 (140)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q psy8840 340 ELAKRINSM 348 (355)
Q Consensus 340 ~l~~~~~~~ 348 (355)
.|.+.++.+
T Consensus 130 ~L~~ql~~L 138 (140)
T PF10473_consen 130 MLQKQLKEL 138 (140)
T ss_pred HHHHHHhhh
No 205
>KOG2077|consensus
Probab=22.26 E-value=5.8e+02 Score=27.04 Aligned_cols=9 Identities=22% Similarity=0.084 Sum_probs=3.7
Q ss_pred HHHHHhhcc
Q psy8840 266 LKNLLNQRT 274 (355)
Q Consensus 266 Lk~~l~~~~ 274 (355)
|..+|....
T Consensus 275 l~eels~aG 283 (832)
T KOG2077|consen 275 LFEELSSAG 283 (832)
T ss_pred hhhhhhhcc
Confidence 444444333
No 206
>KOG2391|consensus
Probab=22.21 E-value=5.8e+02 Score=25.12 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=10.6
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q psy8840 251 PKEALLREYQEEIQRLKNLL 270 (355)
Q Consensus 251 ~~~~~~~~l~~ei~~Lk~~l 270 (355)
..+.+....++|+.++..+.
T Consensus 215 ~~eklR~r~eeeme~~~aeq 234 (365)
T KOG2391|consen 215 VREKLRRRREEEMERLQAEQ 234 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666555544
No 207
>PRK03918 chromosome segregation protein; Provisional
Probab=22.16 E-value=1.1e+03 Score=25.93 Aligned_cols=15 Identities=0% Similarity=0.089 Sum_probs=8.6
Q ss_pred EEecCHHHHHHHHhc
Q psy8840 82 YICKNVKEIEQVMQN 96 (355)
Q Consensus 82 ~~v~s~~e~~~ll~~ 96 (355)
....+..++...+..
T Consensus 105 ~~~~~~~~~~~~i~~ 119 (880)
T PRK03918 105 VLEEGDSSVREWVER 119 (880)
T ss_pred eecccHHHHHHHHHH
Confidence 444555666666655
No 208
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=22.15 E-value=3.7e+02 Score=20.68 Aligned_cols=57 Identities=26% Similarity=0.354 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8840 296 EDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSMESKL 352 (355)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 352 (355)
-..++.....+.+........-..+....+...+.+...|+..+-..+||..|.+++
T Consensus 24 l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl 80 (88)
T PF10241_consen 24 LGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKL 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555556666777777777777888888888888887775
No 209
>KOG0249|consensus
Probab=22.06 E-value=1e+03 Score=25.99 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8840 253 EALLREYQEEIQRLKNLL 270 (355)
Q Consensus 253 ~~~~~~l~~ei~~Lk~~l 270 (355)
+..++++..+++++..+|
T Consensus 162 eer~~kl~~~~qe~naeL 179 (916)
T KOG0249|consen 162 EERTRKLEEQLEELNAEL 179 (916)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 210
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=21.98 E-value=1.9e+02 Score=21.91 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy8840 336 KYTEELAKRINSMESKL 352 (355)
Q Consensus 336 ~~~~~l~~~~~~~e~~~ 352 (355)
...+.|++|++.||+-+
T Consensus 49 ~~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 49 EQAERMEERIETLERIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34667777888888765
No 211
>PLN03184 chloroplast Hsp70; Provisional
Probab=21.91 E-value=7.4e+02 Score=26.60 Aligned_cols=61 Identities=15% Similarity=0.250 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhh
Q psy8840 292 LNEEEDKLNNKRKRIMN-ENHLSDAEKQKLLQEVESKQKAIEA-----EKKYTEELAKRINSMESKL 352 (355)
Q Consensus 292 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~e~~~ 352 (355)
.++.+.-+...+..+.+ ......+++.++.+.+++.++-|.. .++..++|.+.+..++.++
T Consensus 568 kN~lE~~iy~~r~~l~e~~~~~~~eer~~l~~~l~~~e~wL~~~d~~~ik~~~~~l~~~l~~l~~~~ 634 (673)
T PLN03184 568 KNQADSVVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIASGSTQKMKDAMAALNQEVMQIGQSL 634 (673)
T ss_pred HHhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444432 1234566777776666665554433 3455667777777776654
No 212
>PRK04406 hypothetical protein; Provisional
Probab=21.91 E-value=3.5e+02 Score=20.31 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8840 318 QKLLQEVESKQKAIEAEKKYTEELAKRINSMES 350 (355)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~ 350 (355)
..|-+.+-+++++|...+.....|..++..++.
T Consensus 28 e~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 28 EELNDALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555566666677766777777777777664
No 213
>KOG3859|consensus
Probab=21.88 E-value=6.5e+02 Score=24.38 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q psy8840 287 TREEYLNEEEDKLNNKRKRIMN 308 (355)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~ 308 (355)
.+.+.+.+.+.+-++.+....+
T Consensus 327 Kr~e~~~e~qrkEee~rqmFvq 348 (406)
T KOG3859|consen 327 KRNEFLGELQRKEEEMRQMFVQ 348 (406)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 3445555555555555554443
No 214
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=21.50 E-value=7.2e+02 Score=23.74 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhhcccC
Q psy8840 255 LLREYQEEIQRLKNLLNQRTVQ 276 (355)
Q Consensus 255 ~~~~l~~ei~~Lk~~l~~~~~~ 276 (355)
-|.++...+.+|+++-.++.-+
T Consensus 19 KIqelE~QldkLkKE~qQrQfQ 40 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQ 40 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777777777776655433
No 215
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=21.48 E-value=5.2e+02 Score=22.90 Aligned_cols=8 Identities=38% Similarity=0.625 Sum_probs=3.6
Q ss_pred eecCC-CCc
Q psy8840 144 LVDLA-GSE 151 (355)
Q Consensus 144 ~VDLA-GsE 151 (355)
++|-+ ||+
T Consensus 57 yCDC~DGSD 65 (176)
T PF12999_consen 57 YCDCPDGSD 65 (176)
T ss_pred ceeCCCCCC
Confidence 45544 443
No 216
>PF07208 DUF1414: Protein of unknown function (DUF1414); InterPro: IPR009857 This family consists of several hypothetical bacterial proteins of around 70 residues in length. Members of this family are often referred to as YejL. The function of this family is unknown.; PDB: 2JPQ_A 2JUZ_B 2JUW_B 2QTI_A 2OTA_A 2JR2_A 2JRX_A.
Probab=21.38 E-value=75 Score=21.50 Aligned_cols=17 Identities=35% Similarity=0.737 Sum_probs=14.3
Q ss_pred hhhhhHHHHHHHHHHhC
Q psy8840 169 INLSLSALGNVISALVD 185 (355)
Q Consensus 169 IN~SL~~L~~vI~aL~~ 185 (355)
...||++|||++..+-.
T Consensus 5 ~DLsLMvLGN~vTniln 21 (44)
T PF07208_consen 5 TDLSLMVLGNMVTNILN 21 (44)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHh
Confidence 45799999999998865
No 217
>KOG0612|consensus
Probab=21.30 E-value=1.1e+03 Score=27.51 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8840 253 EALLREYQEEIQRLKNLL 270 (355)
Q Consensus 253 ~~~~~~l~~ei~~Lk~~l 270 (355)
+.+.++|++.+.+++.+.
T Consensus 464 ~~~~keL~e~i~~lk~~~ 481 (1317)
T KOG0612|consen 464 EEMDKELEETIEKLKSEE 481 (1317)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666666665444
No 218
>PRK02224 chromosome segregation protein; Provisional
Probab=21.29 E-value=1e+03 Score=26.06 Aligned_cols=9 Identities=11% Similarity=0.109 Sum_probs=5.0
Q ss_pred ceEEEEEEE
Q psy8840 36 KQYLIRASY 44 (355)
Q Consensus 36 ~~~~v~vS~ 44 (355)
..+.|.+.|
T Consensus 66 ~~~~v~~~f 74 (880)
T PRK02224 66 EEAEIELWF 74 (880)
T ss_pred CcEEEEEEE
Confidence 345666665
No 219
>KOG0976|consensus
Probab=21.28 E-value=1.2e+03 Score=26.07 Aligned_cols=57 Identities=25% Similarity=0.293 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8840 295 EEDKLNNKRKRIMNE---NHLSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSMESK 351 (355)
Q Consensus 295 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 351 (355)
.++++.....+|... -...+.++.+|.+.++..+.++...+.+.|.+..++..+|.-
T Consensus 97 lEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~e 156 (1265)
T KOG0976|consen 97 LEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDE 156 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444444444444332 223455666666666666666655555666666666555543
No 220
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=21.20 E-value=6.2e+02 Score=25.55 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=6.8
Q ss_pred CCchHHHHHHHHH
Q psy8840 16 KGVIPNSFDQIFS 28 (355)
Q Consensus 16 ~GIipra~~~lF~ 28 (355)
.||-.-++..+..
T Consensus 41 ~Gi~~~~i~~~~~ 53 (451)
T PF03961_consen 41 YGIDEEAIDKAIE 53 (451)
T ss_pred cccCHHHHHHHHh
Confidence 3555555555443
No 221
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=21.13 E-value=6.6e+02 Score=23.17 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8840 316 EKQKLLQEVESKQKAIEAEKKYTEE 340 (355)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (355)
++.+..+.+.....++...+.+..+
T Consensus 75 er~~~~~~i~r~~eey~~Lk~~in~ 99 (230)
T PF10146_consen 75 ERNKRQEKIQRLYEEYKPLKDEINE 99 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443333333
No 222
>PRK09458 pspB phage shock protein B; Provisional
Probab=20.98 E-value=2.1e+02 Score=21.71 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhh
Q psy8840 337 YTEELAKRINSMESKL 352 (355)
Q Consensus 337 ~~~~l~~~~~~~e~~~ 352 (355)
..+.+++||+.+|+-+
T Consensus 50 ~A~rm~~RI~tLE~IL 65 (75)
T PRK09458 50 KAERMRERIQALEAIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566777888887755
No 223
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=20.86 E-value=2.9e+02 Score=20.33 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=14.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Q psy8840 312 LSDAEKQKLLQEVESKQKAIEAEKK 336 (355)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (355)
.....+..+...+..-..++...++
T Consensus 51 ~p~s~r~~~~~kl~~yr~~l~~lk~ 75 (79)
T PF05008_consen 51 LPPSERNQYKSKLRSYRSELKKLKK 75 (79)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666666666655443
No 224
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=20.84 E-value=5.8e+02 Score=26.33 Aligned_cols=48 Identities=15% Similarity=0.267 Sum_probs=22.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Q psy8840 285 NQTREEYLNEEEDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEA 333 (355)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (355)
.+..++++..++++...++.++..+. +..++-..+.++-++..++|+.
T Consensus 339 ie~kEeei~~L~~~~d~L~~q~~kq~-Is~e~fe~mn~Ere~L~reL~~ 386 (622)
T COG5185 339 IELKEEEIKALQSNIDELHKQLRKQG-ISTEQFELMNQEREKLTRELDK 386 (622)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666666665432 3333333333333333333333
No 225
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=20.74 E-value=4.2e+02 Score=20.71 Aligned_cols=17 Identities=18% Similarity=0.528 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy8840 335 KKYTEELAKRINSMESK 351 (355)
Q Consensus 335 ~~~~~~l~~~~~~~e~~ 351 (355)
+.-...+..++..+|..
T Consensus 79 ~~~E~~~~~~l~~~Eke 95 (96)
T PF08647_consen 79 KETEKEFVRKLKNLEKE 95 (96)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 33344555556665543
No 226
>KOG0161|consensus
Probab=20.58 E-value=1.1e+03 Score=28.81 Aligned_cols=36 Identities=33% Similarity=0.447 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8840 317 KQKLLQEVESKQKAIEAEKKYTEELAKRINSMESKL 352 (355)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 352 (355)
+.++.+.+......++++++...++++....+|+.+
T Consensus 1015 ~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el 1050 (1930)
T KOG0161|consen 1015 KAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGEL 1050 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555566666666666665555555443
No 227
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=20.53 E-value=2.1e+02 Score=21.64 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhh
Q psy8840 337 YTEELAKRINSMESKL 352 (355)
Q Consensus 337 ~~~~l~~~~~~~e~~~ 352 (355)
..+.|++|++.||.-+
T Consensus 50 ~a~rm~eRI~tLE~IL 65 (75)
T TIGR02976 50 KADRLEERIDTLERIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4667777888888755
No 228
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=20.47 E-value=8.2e+02 Score=24.59 Aligned_cols=6 Identities=17% Similarity=0.490 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy8840 320 LLQEVE 325 (355)
Q Consensus 320 ~~~~~~ 325 (355)
+.++..
T Consensus 74 l~~~~~ 79 (418)
T TIGR00414 74 IKKELK 79 (418)
T ss_pred HHHHHH
Confidence 333333
No 229
>PRK02793 phi X174 lysis protein; Provisional
Probab=20.43 E-value=3.7e+02 Score=19.96 Aligned_cols=33 Identities=9% Similarity=0.169 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8840 319 KLLQEVESKQKAIEAEKKYTEELAKRINSMESK 351 (355)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 351 (355)
.|-+.+-+++++|....+....|..++..++..
T Consensus 26 ~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 26 ELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 444555556666666666777777777777653
No 230
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.41 E-value=3.6e+02 Score=24.99 Aligned_cols=23 Identities=9% Similarity=0.237 Sum_probs=13.4
Q ss_pred CceEEEEEecCCCCCCHHHHHHHHH
Q psy8840 209 NSKTLMIANIGPASYNYEESLTTLR 233 (355)
Q Consensus 209 nskt~mI~~vsp~~~~~~eTlsTL~ 233 (355)
.....|-+-|.|. .+++.+..|.
T Consensus 93 ~~~~~ltiRVP~~--~~~~~l~~l~ 115 (262)
T PF14257_consen 93 ERSASLTIRVPAD--KFDSFLDELS 115 (262)
T ss_pred cceEEEEEEECHH--HHHHHHHHHh
Confidence 3445555566553 5776666665
No 231
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=20.41 E-value=3.1e+02 Score=21.77 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=12.1
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHH
Q psy8840 283 DENQTREEYLNEEEDKLNNKRKRI 306 (355)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~ 306 (355)
++.+...++..+++..++...+.+
T Consensus 71 defdmikee~~emkkdleaankrv 94 (122)
T PF05325_consen 71 DEFDMIKEETIEMKKDLEAANKRV 94 (122)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555444433
No 232
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=20.37 E-value=6.6e+02 Score=28.92 Aligned_cols=13 Identities=0% Similarity=0.327 Sum_probs=6.7
Q ss_pred EEecCHHHHHHHH
Q psy8840 82 YICKNVKEIEQVM 94 (355)
Q Consensus 82 ~~v~s~~e~~~ll 94 (355)
+.|.+.+.+..+.
T Consensus 617 ~Iv~~l~~A~~l~ 629 (1163)
T COG1196 617 LVVDDLEQARRLA 629 (1163)
T ss_pred EEecCHHHHHHHH
Confidence 3455555555554
No 233
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=20.35 E-value=4.7e+02 Score=28.29 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q psy8840 254 ALLREYQEEIQRLKNLLNQRT 274 (355)
Q Consensus 254 ~~~~~l~~ei~~Lk~~l~~~~ 274 (355)
..+..++.++..++.++.+..
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~ 308 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLS 308 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777776665433
No 234
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=20.22 E-value=7.4e+02 Score=26.38 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=7.5
Q ss_pred cCHHHHHHHHhcCcc
Q psy8840 85 KNVKEIEQVMQNGNF 99 (355)
Q Consensus 85 ~s~~e~~~ll~~g~~ 99 (355)
+|.-+++.+.-.|..
T Consensus 42 ttll~ai~~~LyG~~ 56 (650)
T TIGR03185 42 TTLLDAIQLALYGKR 56 (650)
T ss_pred HHHHHHHHHHhcCcc
Confidence 344555555555543
No 235
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=20.21 E-value=6.4e+02 Score=22.67 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHh
Q psy8840 257 REYQEEIQRLKNLLN 271 (355)
Q Consensus 257 ~~l~~ei~~Lk~~l~ 271 (355)
.+|..++..|+.++.
T Consensus 39 a~L~~e~~~L~~q~~ 53 (193)
T PF14662_consen 39 AQLAEEITDLRKQLK 53 (193)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555443
No 236
>KOG3809|consensus
Probab=20.20 E-value=9.4e+02 Score=24.60 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8840 320 LLQEVESKQKAIEAEKKYTEELAKRINSMESKL 352 (355)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 352 (355)
|...|...++.|...+.+..+..-+|..=|.+|
T Consensus 544 L~~~la~lq~~I~d~~e~i~~~r~~IL~Ne~rI 576 (583)
T KOG3809|consen 544 LYNILANLQKEINDTKEEISKARGRILNNEKRI 576 (583)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 445555556666665656666555555555544
No 237
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=20.19 E-value=8.5e+02 Score=25.90 Aligned_cols=32 Identities=34% Similarity=0.479 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8840 321 LQEVESKQKAIEAEKKYTEELAKRINSMESKL 352 (355)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 352 (355)
..-+.+++.+|.+.......|++.|+.++.++
T Consensus 497 v~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL 528 (594)
T PF05667_consen 497 VKNIRKQKEEIEKILSDTRELQKEINSLTGKL 528 (594)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666667777777777777665
No 238
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=20.11 E-value=9.8e+02 Score=25.82 Aligned_cols=10 Identities=10% Similarity=0.209 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy8840 259 YQEEIQRLKN 268 (355)
Q Consensus 259 l~~ei~~Lk~ 268 (355)
++.++..|+.
T Consensus 321 l~~qi~~l~~ 330 (754)
T TIGR01005 321 AKSSLADLDA 330 (754)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 239
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=20.10 E-value=5.9e+02 Score=28.02 Aligned_cols=38 Identities=24% Similarity=0.458 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8840 314 DAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSMESK 351 (355)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 351 (355)
.+++..+.-++......+.....+...|..+|..||..
T Consensus 370 qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~ 407 (775)
T PF10174_consen 370 QEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQ 407 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555666666666666644
Done!