RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8840
(355 letters)
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 464 bits (1196), Expect = e-165
Identities = 195/257 (75%), Positives = 229/257 (89%), Gaps = 1/257 (0%)
Query: 4 YMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKR 63
Y + G + E +GVIPNSFD IF+HI+R++N+QYL+RASYLEIYQEEIRDLL KDQ+KR
Sbjct: 117 YTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKR 176
Query: 64 YELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITI 123
EL+E PD+GVYVK+L S++ K+VKEIE VM GN NR++GATNMNEHSSRSHAIF+ITI
Sbjct: 177 LELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITI 236
Query: 124 EMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISAL 183
E S+V D +RVGKLNLVDLAGSERQ+KTGA G+RLKEA+KINLSLSALGNVISAL
Sbjct: 237 ECSEVGLDGENH-IRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISAL 295
Query: 184 VDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKN 243
VDGK+ H+PYRDSKLTRLLQDSLGGN+KT+M+AN+GPASYN EE+LTTLRYANRAKNIKN
Sbjct: 296 VDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKN 355
Query: 244 QPRVNEDPKEALLREYQ 260
+PRVNEDPK+ALLRE+Q
Sbjct: 356 KPRVNEDPKDALLREFQ 372
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 440 bits (1133), Expect = e-155
Identities = 117/271 (43%), Positives = 166/271 (61%), Gaps = 7/271 (2%)
Query: 4 YMIIGSKESAESKGVIPNSFDQIFSHIART-ENKQYLIRASYLEIYQEEIRDLLDKDQSK 62
+ + G + +G+IP + IF+HI N ++ I+ SY EIY ++IRDLLD +
Sbjct: 100 HTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSK-V 158
Query: 63 RYELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIIT 122
+ E+ + YVK + +++ +V++ G NR I TNMNEHSSRSH++F+I
Sbjct: 159 NLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLIN 218
Query: 123 IEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISA 182
++ ++ GKL LVDLAGSE+ SKTGA G L EA IN SLSALGNVISA
Sbjct: 219 VKQENLENQK----KLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISA 274
Query: 183 LVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIK 242
L DG H+PYRDSKLTR+LQ+SLGGN++T ++ PAS+N E+ +TL + RAK +K
Sbjct: 275 LADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVK 334
Query: 243 NQPRVNEDP-KEALLREYQEEIQRLKNLLNQ 272
N VNE+ E R Y++E ++ L +
Sbjct: 335 NVVCVNEELTAEEWKRRYEKEKEKNARLKGK 365
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 440 bits (1134), Expect = e-155
Identities = 101/266 (37%), Positives = 145/266 (54%), Gaps = 9/266 (3%)
Query: 12 SAESKGVIPNSFDQIFSHI----ARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELR 67
S E GVIP + + A + SYLEIYQE++ DLLD S +R
Sbjct: 119 SPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLD-PASGDLVIR 177
Query: 68 ENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSD 127
E+ + + L + + E+ + NRT+GAT +N+ SSRSHA+ ++ ++
Sbjct: 178 EDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQ-- 235
Query: 128 VREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGK 187
RE + + R GKL L+DLAGSE +TG G RLKE+ IN SL LG V+ AL G
Sbjct: 236 -RERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL 294
Query: 188 NIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRV 247
VPYRDSKLTRLLQDSLGG++ +++IANI P Y ++++ L +A R+K + N+P
Sbjct: 295 P-RVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFT 353
Query: 248 NEDPKEALLREYQEEIQRLKNLLNQR 273
NE + L + + L +
Sbjct: 354 NESLQPHALGPVKLSQKELLGPPEAK 379
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 438 bits (1130), Expect = e-155
Identities = 129/262 (49%), Positives = 176/262 (67%), Gaps = 6/262 (2%)
Query: 5 MIIGSKESAESKGVIPNSFDQIFSHI-ARTENKQYLIRASYLEIYQEEIRDLLDKDQSKR 63
M+ S + + +GVIP +QIF+ I + N +Y +R SY+EIY E IRDLL +
Sbjct: 98 MMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQ-NDN 156
Query: 64 YELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITI 123
+ E + GVYVK L +V+E+ +VM+ G R + ATNMN+ SSRSH+IF+ITI
Sbjct: 157 LPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITI 216
Query: 124 EMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISAL 183
+V S + G+L LVDLAGSE+ KTGA+G+ L+EA KIN SLSALG VI+AL
Sbjct: 217 TQKNVETGS----AKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINAL 272
Query: 184 VDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKN 243
DGK+ HVPYRDSKLTR+LQ+SLGGNS+T +I N P+SYN E+L+TLR+ RAK+IKN
Sbjct: 273 TDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKN 332
Query: 244 QPRVNEDPKEALLREYQEEIQR 265
+ +VN + A L++ + +
Sbjct: 333 KAKVNAELSPAELKQMLAKAKT 354
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 435 bits (1121), Expect = e-153
Identities = 115/261 (44%), Positives = 162/261 (62%), Gaps = 14/261 (5%)
Query: 4 YMIIGSKESAESKGVIPNSFDQIFSHIART--ENKQYLIRASYLEIYQEEIRDLLDKDQS 61
Y ++G +E + +G+IP + +FS I T +N Y + SY+EIY E +RDLL+
Sbjct: 105 YTMMGKQEK-DQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNK 163
Query: 62 KRYELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFII 121
+RE+P G YV++L + +I+ +M +GN RT+ ATNMNE SSRSHA+F I
Sbjct: 164 GNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNI 223
Query: 122 TIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVIS 181
+++++ +V K++LVDLAGSER TGA G RLKE + IN SL+ LG VIS
Sbjct: 224 IFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVIS 283
Query: 182 ALVD-----------GKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLT 230
AL + K +PYRDS LT LL+++LGGNS+T M+A + PA NY+E+L+
Sbjct: 284 ALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLS 343
Query: 231 TLRYANRAKNIKNQPRVNEDP 251
TLRYA+RAK I+N VN
Sbjct: 344 TLRYADRAKQIRNTVSVNHHH 364
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 433 bits (1117), Expect = e-153
Identities = 109/254 (42%), Positives = 152/254 (59%), Gaps = 5/254 (1%)
Query: 12 SAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRY-ELRENP 70
S + GVIP + IF I + ++++L+R SY+EIY E I DLL Q + +RE+
Sbjct: 98 SEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDV 157
Query: 71 DSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVRE 130
+ VYV +L + + + + G +R G T MN+ SSRSH IF + +E + E
Sbjct: 158 NRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGE 217
Query: 131 DSSM-SQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKN- 188
S+ V+V LNLVDLAGSER ++TGA G RLKE IN SL LG VI L DG+
Sbjct: 218 PSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVG 277
Query: 189 IHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVN 248
+ YRDSKLTR+LQ+SLGGN+KT +I I P +++E+LT L++A+ AK +KN P VN
Sbjct: 278 GFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVN 335
Query: 249 EDPKEALLREYQEE 262
E + L +
Sbjct: 336 EVSTDELEHHHHHH 349
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 425 bits (1095), Expect = e-150
Identities = 141/246 (57%), Positives = 178/246 (72%), Gaps = 6/246 (2%)
Query: 12 SAESKGVIPNSFDQIFSHI-ARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENP 70
+ E G IPNSF +F I + + N+ +L+ SYLE+Y EEIRDL+ + L+E+
Sbjct: 110 NKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTK--LPLKEDK 167
Query: 71 DSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVRE 130
G+YV L + E+ +M G NR + AT MN+ SSRSH+IF++ IE S+V
Sbjct: 168 TRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEV-- 225
Query: 131 DSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIH 190
+ +RVGKLNLVDLAGSERQSKTGATG+ L E +KINLSLSALG VIS LV+G H
Sbjct: 226 IENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGAT-H 284
Query: 191 VPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNED 250
+PYRDSKLTRLLQDSLGGNSKTLM ANI PAS NY+E+++TLRYA+RAK IKN+PR+NED
Sbjct: 285 IPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINED 344
Query: 251 PKEALL 256
PK+A +
Sbjct: 345 PKDAQI 350
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 414 bits (1066), Expect = e-145
Identities = 116/246 (47%), Positives = 161/246 (65%), Gaps = 7/246 (2%)
Query: 8 GSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLD--KDQSKRYE 65
+ E G+IP + QIF + ++ ++ S LEIY EE+ DLL+ D S+R +
Sbjct: 116 YTWEEDPLAGIIPRTLHQIFEKLTD-NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQ 174
Query: 66 LRENPDS--GVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITI 123
+ ++P + GV +K L+ N E+ Q+++ G RT AT MN +SSRSH++F +TI
Sbjct: 175 MFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI 234
Query: 124 EMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISAL 183
M + D V++GKLNLVDLAGSE ++GA KR +EA IN SL LG VI+AL
Sbjct: 235 HMKETTIDG-EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 293
Query: 184 VDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKN 243
V+ + HVPYR+SKLTR+LQDSLGG ++T +IA I PAS N EE+L+TL YA+RAKNI N
Sbjct: 294 VE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 352
Query: 244 QPRVNE 249
+P VN+
Sbjct: 353 KPEVNQ 358
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 413 bits (1063), Expect = e-145
Identities = 121/240 (50%), Positives = 158/240 (65%), Gaps = 8/240 (3%)
Query: 12 SAESKGVIPNSFDQIFSHIART--ENKQYLIRASYLEIYQEEIRDLLD-KDQSKRYELRE 68
+A+ G+IP +F + E + + + SY+EIY E++RDLLD K + ++RE
Sbjct: 113 TADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVRE 172
Query: 69 NPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDV 128
+ G YV L + K+IE +M GN +RT+ ATNMNE SSRSHA+F IT+ +
Sbjct: 173 HSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLY 232
Query: 129 REDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVD--- 185
S S +VGKL+LVDLAGSER +KTGA G RLKE S IN SL+ LG VISAL D
Sbjct: 233 DVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSA 292
Query: 186 --GKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKN 243
KN VPYRDS LT LL+DSLGGNSKT M+A + PA+ NY+E+L+TLRYA+RAK+ +
Sbjct: 293 GKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKHHHH 352
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 412 bits (1062), Expect = e-145
Identities = 102/238 (42%), Positives = 152/238 (63%), Gaps = 7/238 (2%)
Query: 9 SKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRY-ELR 67
+ + +G++P + + F I + L+ SYLE+Y+EE RDLL+ + R +LR
Sbjct: 107 ASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLR 166
Query: 68 ENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSD 127
E+ V + ++ + + E+ +++ GN R GAT++N SSRSH +F +T+E
Sbjct: 167 EDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRG 226
Query: 128 VREDSSMS----QVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISAL 183
Q+ V K + VDLAGSER KTG+TG+RLKE+ +IN SL ALGNVISAL
Sbjct: 227 RAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISAL 286
Query: 184 VDG--KNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAK 239
D + H+PYRDSK+TR+L+DSLGGN+KT+MIA + P+S +++E+L TL YA+RA+
Sbjct: 287 GDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 415 bits (1070), Expect = e-145
Identities = 111/287 (38%), Positives = 165/287 (57%), Gaps = 32/287 (11%)
Query: 12 SAESKGVIPNSFDQIFSHIARTENK----QYLIRASYLEIYQEEIRDLLDKDQSKRY--- 64
+ + G+IP + + +F IA +++ Y ++ SY E+Y E +RDLL +
Sbjct: 157 TPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYY 216
Query: 65 -ELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITI 123
++RE+P G YVK+L + ++EI + M+ G+ +RT+ +T MN+ SSRSHA+F I +
Sbjct: 217 LKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIML 276
Query: 124 EMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISAL 183
+ ++ + R ++ LVDLAGSER T ATG+RL+E S IN SL+ LG VI+AL
Sbjct: 277 KQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAAL 336
Query: 184 VDGK---------------------NIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPAS 222
D K N VPYRDS LT LL+DSLGGNSKT MIA I P
Sbjct: 337 ADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT- 395
Query: 223 YNYEESLTTLRYANRAKNIKNQPRVNEDPKEALLREYQEEIQRLKNL 269
+Y+E+L+TLRYA++AK I+ + VN+ + E +I + +
Sbjct: 396 -DYDETLSTLRYADQAKRIRTRAVVNQVDGVSAA-ERDAQIPSIVHR 440
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 410 bits (1057), Expect = e-144
Identities = 103/245 (42%), Positives = 149/245 (60%), Gaps = 6/245 (2%)
Query: 9 SKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRE 68
S E G+IP + +F + R +Y +R SYLE+Y EE+ DLL D + + + +
Sbjct: 129 SWEDDSDIGIIPRALSHLFDEL-RMMEVEYTMRISYLELYNEELCDLLSTDDTTKIRIFD 187
Query: 69 NPD--SGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMS 126
+ V ++ L+ + ++ ++++ G R T MN SSRSH +F I + +
Sbjct: 188 DSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIR 247
Query: 127 DVREDSSMSQVRVGKLNLVDLAGSERQSKTG-ATGKRLKEASKINLSLSALGNVISALVD 185
+ + +++GKLNLVDLAGSE SK G G R++E IN SL LG VI+ALVD
Sbjct: 248 ENGIEGE-DMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD 306
Query: 186 GKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQP 245
+ HVPYR+SKLTRLLQ+SLGG +KT +IA I P + EE+L+TL YA+RAKNI+N+P
Sbjct: 307 -RAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKP 365
Query: 246 RVNED 250
VN+
Sbjct: 366 EVNQK 370
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 408 bits (1050), Expect = e-143
Identities = 94/243 (38%), Positives = 138/243 (56%), Gaps = 8/243 (3%)
Query: 4 YMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDK----- 58
Y ++G+ E+ + +G++P + Q+F I +R SYLEIY E + DLL
Sbjct: 119 YTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVG 178
Query: 59 DQSKRYELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAI 118
+ ENP GV++K L ++ ++ ++ G NR I + MN++SSRSH I
Sbjct: 179 PSVTPMTIVENPQ-GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCI 237
Query: 119 FIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGN 178
F I +E S + K+NLVDLAGSER K+G+ G+ LKEA+ IN SLS L
Sbjct: 238 FTIYLEAHS--RTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQ 295
Query: 179 VISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRA 238
I AL D K H+P+R KLT L+DSLGGN +++ NI + EE+L++LR+A+R
Sbjct: 296 AIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRM 355
Query: 239 KNI 241
K +
Sbjct: 356 KLV 358
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 405 bits (1044), Expect = e-142
Identities = 108/239 (45%), Positives = 145/239 (60%), Gaps = 7/239 (2%)
Query: 4 YMIIGSKESAESKGVIPNSFDQIFSHI-ARTENKQYLIRASYLEIYQEEIRDLLDKDQSK 62
+ + G E G+IP IF++I + EN ++ I+ SY EIY ++IRDLLD
Sbjct: 93 HTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVS-KT 151
Query: 63 RYELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIIT 122
+ E+ + YVK + E+ + G NR + TNMNEHSSRSH+IF+I
Sbjct: 152 NLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLIN 211
Query: 123 IEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISA 182
++ + + + GKL LVDLAGSE+ SKTGA G L EA IN SLSALGNVISA
Sbjct: 212 VKQENTQTEQ----KLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISA 267
Query: 183 LVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNI 241
L +G +VPYRDSK+TR+LQDSLGGN +T ++ P+SYN E+ +TL + RAK I
Sbjct: 268 LAEGST-YVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 404 bits (1040), Expect = e-141
Identities = 99/275 (36%), Positives = 157/275 (57%), Gaps = 11/275 (4%)
Query: 14 ESKGVIPNSFDQIFSHIA-RTENKQYLIRASYLEIYQEEIRDLLDKDQS--KRYELRENP 70
+ G+ P + ++F + + + ++A +E+YQ+ + DLL Q+ + +++++
Sbjct: 102 SNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDS 161
Query: 71 DSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVRE 130
V V+N+ +E++ ++Q G+ R T MNE SSRSH I + IE ++++
Sbjct: 162 KGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQT 221
Query: 131 DSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIH 190
+ GKL+ VDLAGSER K+G+ G +LKEA IN SLSALG+VISAL N H
Sbjct: 222 Q----AIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSS-GNQH 276
Query: 191 VPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNED 250
+PYR+ KLT L+ DSLGGN+KTLM NI PA N +E+ +L YA+R ++I N P N
Sbjct: 277 IPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVS 336
Query: 251 PKEALLREYQEEIQRLKNLLNQRTVQPS-SKLNDE 284
KE + ++ + K ++ ++ DE
Sbjct: 337 SKE--VARLKKLVSYWKEQAGRKGDDEELEEIQDE 369
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 398 bits (1024), Expect = e-139
Identities = 71/243 (29%), Positives = 112/243 (46%), Gaps = 21/243 (8%)
Query: 9 SKESAESKGVIPNSFDQIFSHIARTE---NKQYLIRASYLEIYQEEIRDLLDKDQSKRYE 65
+ E G++P + IF + + + AS++EIY E+ DLL
Sbjct: 118 GEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGST------ 171
Query: 66 LRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEM 125
P + + ++ +++ G NR + TNMN +SSRSHAI I ++
Sbjct: 172 -PHMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVK- 229
Query: 126 SDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVD 185
S+ ++N+VDLAGSE +TG G +E INL L ++ V+ ++
Sbjct: 230 ---------SKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAA 280
Query: 186 GKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQP 245
G +PYRDS LT +LQ SL S +A I P + E+L+TLR+ AK +
Sbjct: 281 GHT-VIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAALEH 339
Query: 246 RVN 248
+
Sbjct: 340 HHH 342
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 396 bits (1020), Expect = e-138
Identities = 111/233 (47%), Positives = 149/233 (63%), Gaps = 6/233 (2%)
Query: 12 SAESKGVIPNSFDQIFSHIART-ENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENP 70
SA+ GV+ + ++ + E K SYLE+Y E+IRDLL S +RE+
Sbjct: 126 SADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVN--SGPLAVREDT 183
Query: 71 DSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVRE 130
GV V L + K+ +EI ++ NGN NRT T+MN SSRSHA+F I + D +
Sbjct: 184 QKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQD-KT 242
Query: 131 DSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDG--KN 188
S VR+ K++L+DLAGSER S +GA G R E + IN SL ALGNVI+AL D KN
Sbjct: 243 ASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKN 302
Query: 189 IHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNI 241
H+PYR+SKLTRLL+DSLGGN +T+MIA + P+S Y+++ TL+YANRAK+I
Sbjct: 303 QHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 386 bits (993), Expect = e-134
Identities = 85/261 (32%), Positives = 130/261 (49%), Gaps = 12/261 (4%)
Query: 9 SKESAESKGVIPNSFDQIFSHIARTE-NKQYLIRASYLEIYQEEIRDLLDKDQSKRYELR 67
+++ G+ + IF+ + + + I S+ EIY ++ DLL K K
Sbjct: 107 PYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQK--RKMVAAL 164
Query: 68 ENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSD 127
EN V VK+L+ +E+ M +G R IG + N+ SSRSHAI I ++ +
Sbjct: 165 ENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN 224
Query: 128 VREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLK-EASKINLSLSALGNVISALVDG 186
+GK+ +DLAGSER + T + K+ + + + IN SL AL I A+
Sbjct: 225 -------KNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSD 277
Query: 187 KNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPR 246
KN H+P+RDS+LT++L+D G SK++MIANI P E++L TLRY++R KN N
Sbjct: 278 KN-HIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKL 336
Query: 247 VNEDPKEALLREYQEEIQRLK 267
+ LL
Sbjct: 337 EGKPIPNPLLGLDSSRTGHHH 357
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 384 bits (989), Expect = e-134
Identities = 105/234 (44%), Positives = 149/234 (63%), Gaps = 8/234 (3%)
Query: 12 SAESKGVIPNSFDQIFSHI-ARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENP 70
+AE+ G+ + +FS + + + +Y I S EIY E +RDLL K+ ++ E+R P
Sbjct: 101 TAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCP 160
Query: 71 DS--GVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDV 128
D +YV L + ++V +I +V + G+ NRT TN+NEHSSRSHA+ I+T+ D
Sbjct: 161 DGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDC 220
Query: 129 REDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKN 188
GKLNLVDLAGSER K+GA G RL+EA IN SLSALG+VI+AL +
Sbjct: 221 STG----LRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRS-RQ 275
Query: 189 IHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIK 242
HVP+R+SKLT LLQDSL G+SKTLM+ + P N E+L +L++A R ++++
Sbjct: 276 GHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 383 bits (987), Expect = e-133
Identities = 93/246 (37%), Positives = 141/246 (57%), Gaps = 17/246 (6%)
Query: 14 ESKGVIPNSFDQIFSHIA--RTENKQYLIRASYLEIYQEEIRDLLDKDQSK--------R 63
G+IP++ IF+ I +T+ Y + ++EIY E I DLL D + +
Sbjct: 105 PGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLK 164
Query: 64 YELRENPDS-GVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIIT 122
+E+R + ++ + N+ S ++ + +E +++ N R+ +T NEHSS SH+IFII
Sbjct: 165 HEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIH 224
Query: 123 IEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISA 182
+ S+ + G LNLVDLAGSER + + G RL+E IN SLS LG+VI A
Sbjct: 225 LSGSNAKTG----AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHA 280
Query: 183 LV--DGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKN 240
L D H+P+R+SKLT LLQ SL G+SKTLM NI P+S + E+L +LR+A++ +
Sbjct: 281 LGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 340
Query: 241 IKNQPR 246
+ R
Sbjct: 341 TRLVSR 346
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 381 bits (981), Expect = e-132
Identities = 90/248 (36%), Positives = 137/248 (55%), Gaps = 19/248 (7%)
Query: 14 ESKGVIPNSFDQIFSHIA--RTENKQYLIRASYLEIYQEEIRDLLDKDQS---------- 61
G+IP + IF A + Y + Y+EIY E I DLL +S
Sbjct: 106 AGDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDS 165
Query: 62 KRYELR-ENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFI 120
+++++R ++ G Y+ N+ + +++ +++ + R+ AT NE SSRSH++F+
Sbjct: 166 QKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFM 225
Query: 121 ITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVI 180
+ I ++ GKLNLVDLAGSER + + TG+RL+E IN SLS LG+VI
Sbjct: 226 VHINGRNLHTGE----TSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVI 281
Query: 181 SAL--VDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRA 238
AL D ++P+R+SKLT LLQ SL G+SKTLM NI P + E+L +LR+A++
Sbjct: 282 YALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKV 341
Query: 239 KNIKNQPR 246
+ K R
Sbjct: 342 NSTKIAKR 349
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 372 bits (958), Expect = e-128
Identities = 96/246 (39%), Positives = 144/246 (58%), Gaps = 17/246 (6%)
Query: 14 ESKGVIPNSFDQIFSHIA--RTENKQYLIRASYLEIYQEEIRDLLDKDQSK--------R 63
G+IP++ IF+ I +T+ Y + A ++EIY E I DLL D + +
Sbjct: 161 PGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLK 220
Query: 64 YELRENPDS-GVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIIT 122
+E+R + ++ + N+ S ++ + +E +++ N R+ +T NEHSSRSH+IFII
Sbjct: 221 HEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIH 280
Query: 123 IEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISA 182
+ S+ + G LNLVDLAGSER + + G RL+E IN SLSALG+VI A
Sbjct: 281 LSGSNAKTG----AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHA 336
Query: 183 LV--DGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKN 240
L D H+P+R+SKLT LLQ SL G+SKTLM NI P+S + E+L +LR+A++ +
Sbjct: 337 LGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 396
Query: 241 IKNQPR 246
+ R
Sbjct: 397 TRLVSR 402
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 373 bits (959), Expect = e-128
Identities = 93/253 (36%), Positives = 133/253 (52%), Gaps = 13/253 (5%)
Query: 14 ESKGVIPNSFDQIFSHIARTENK--QYLIRASYLEIYQEEIRDLLDKDQSK-RYELRENP 70
ES GVIP + D +F I N +Y I+A++LEIY E + DLL +Q + +N
Sbjct: 161 ESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNN 220
Query: 71 DSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVRE 130
+ +YV N+ + + +M NR +T NE SSRSHA+ + + +
Sbjct: 221 KNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEK 280
Query: 131 DSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIH 190
++ VG +NLVDLAGSE T R+ E IN SLS L NVI AL+ K H
Sbjct: 281 Q----EISVGSINLVDLAGSES----PKTSTRMTETKNINRSLSELTNVILALLQ-KQDH 331
Query: 191 VPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIK-NQPRVNE 249
+PYR+SKLT LL SLGGNSKTLM N+ P ++ES+ +LR+A + K + + N
Sbjct: 332 IPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 391
Query: 250 DPKEALLREYQEE 262
++ +
Sbjct: 392 YLNNSVANSSTQS 404
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 369 bits (950), Expect = e-127
Identities = 81/240 (33%), Positives = 125/240 (52%), Gaps = 16/240 (6%)
Query: 10 KESAESKGVIPNSFDQIFSHIART--ENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELR 67
K SKG+ + +F + + ++ EIY ++ DLL+K + +
Sbjct: 159 KAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNK--KAKLRVL 216
Query: 68 ENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSD 127
E+ V V LQ ++ + ++ +++ G+ RT G T N +SSRSHA F I +
Sbjct: 217 EDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG 276
Query: 128 VREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLK-EASKINLSLSALGNVISALVDG 186
GK +LVDLAG+ER + T + ++ + E ++IN SL AL I AL
Sbjct: 277 ---------RMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN 327
Query: 187 KNIHVPYRDSKLTRLLQDS-LGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQP 245
K H P+R+SKLT++L+DS +G NS+T MIA I P + E +L TLRYA+R K +
Sbjct: 328 KA-HTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPHS 386
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 370 bits (951), Expect = e-127
Identities = 84/243 (34%), Positives = 127/243 (52%), Gaps = 16/243 (6%)
Query: 10 KESAESKGVIPNSFDQIFSHIA--RTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELR 67
K SKG+ + +F R N + ++ EIY ++ DLL+K + +
Sbjct: 179 KSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK--KAKLRVL 236
Query: 68 ENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSD 127
E+ V V LQ Y+ ++ +++ G+ RT G T N +SSRSHA F I +
Sbjct: 237 EDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG 296
Query: 128 VREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLK-EASKINLSLSALGNVISALVDG 186
GK +LVDLAG+ER + T + ++ + E ++IN SL AL I AL
Sbjct: 297 ---------RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN 347
Query: 187 KNIHVPYRDSKLTRLLQDS-LGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQP 245
K H P+R+SKLT++L+DS +G NS+T MIA I P + E +L TLRYA+R K + +
Sbjct: 348 KA-HTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHH 406
Query: 246 RVN 248
+
Sbjct: 407 HHH 409
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 368 bits (947), Expect = e-127
Identities = 95/247 (38%), Positives = 126/247 (51%), Gaps = 17/247 (6%)
Query: 5 MIIGSKESAESKGVIPNSFDQIFSHIA--RTENKQYLIRASYLEIYQEEIRDLLD----K 58
M G + +G+IP + +FS + Y ASY+EIY E +RDLL K
Sbjct: 133 MEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRK 192
Query: 59 DQSKRYELRENPD--SGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSH 116
Q E+R + V N + KE++ ++ NR + T NE SSRSH
Sbjct: 193 GQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSH 252
Query: 117 AIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATG----KRLKEASKINLS 172
++F + I L+LVDLAGSER A G +RL+E IN S
Sbjct: 253 SVFQLQISGEHSSRG----LQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSS 308
Query: 173 LSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTL 232
LS LG VI AL + K HVPYR+SKLT LLQ+SLGG++K LM NI P N ESL +L
Sbjct: 309 LSTLGLVIMALSN-KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSL 367
Query: 233 RYANRAK 239
R+A++
Sbjct: 368 RFASKVN 374
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus
norvegicus} SCOP: c.37.1.9
Length = 100
Score = 183 bits (466), Expect = 2e-58
Identities = 50/100 (50%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 166 ASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNY 225
A IN SLSALGNVISAL +G HVPYRDSK+TR+LQDSL GN +T ++ P+ +N
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 226 EESLTTLRYANRAKNIKNQPRVNED-PKEALLREYQEEIQ 264
E+ +TL + RAK IKN VN + E ++Y++E +
Sbjct: 61 AETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKE 100
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 180 bits (458), Expect = 5e-57
Identities = 51/104 (49%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 170 NLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESL 229
N SLSALGNVISAL +G HVPYRDSK+TR+LQDSLGGN +T ++ P+ +N E+
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 230 TTLRYANRAKNIKNQPRVNED-PKEALLREYQEEIQRLKNLLNQ 272
+TL + RAK IKN VN + E ++Y++E ++ K L +
Sbjct: 61 STLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSV 104
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.3 bits (158), Expect = 1e-11
Identities = 58/404 (14%), Positives = 124/404 (30%), Gaps = 106/404 (26%)
Query: 4 YMIIGSKESAESKGV-------IPNSFDQIFSHIARTENKQ-YLIRASYLEIYQEEIRD- 54
+ + S + + V + ++ + S I +TE +Q ++ Y+E D
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI-KTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 55 -LLDKDQSKRYE----LRE-----NPDSGVYV-------KN-LQSYICKNVKEIEQVMQN 96
+ K R + LR+ P V + K + +C + +++ M
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS-YKVQCKMDF 182
Query: 97 GNFNRTIGATNMNEHSSRSHAIFII------TIEMSDVREDSSMSQVRVGKLNLVDLAGS 150
F + + + + + I+ + S ++ L + +
Sbjct: 183 KIFWLNLK------NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK---LRIHSIQAE 233
Query: 151 ERQSKTGATGKRLKEASKINLSLSALGNVISA-LVDGKNIH----VPYRDSKLTRLLQDS 205
R RL ++ L L NV +A + N+ + R ++T D
Sbjct: 234 LR---------RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT----DF 280
Query: 206 LGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNEDPKEALLREYQEEIQR 265
L + T + + + +E + L K + R + P+E L
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLL-----LKYLDC--RPQDLPREVL---------- 323
Query: 266 LKNLLNQRTVQP------SSKLNDENQTREEYLNEEEDKLNNKRKRIMNENHLSDAEKQK 319
T P + + D T + + + DKL + + N L AE +K
Sbjct: 324 --------TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--NVLEPAEYRK 373
Query: 320 LLQE-------VESKQKAIE---AEKKYTEELAKRINSMESKLL 353
+ + + ++ +N + L
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIK-SDVMVVVNKLHKYSL 416
Score = 37.9 bits (87), Expect = 0.005
Identities = 45/331 (13%), Positives = 96/331 (29%), Gaps = 98/331 (29%)
Query: 29 HIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYE----LRENPDSGVYV--KNLQSY 82
+A +N +++ I + + L + K ++ + ++ L
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS----AHIPTILLSLI 395
Query: 83 ICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKL 142
+K V+ N ++ E + +I++ +++
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL------ELKVKLE--------- 440
Query: 143 NLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLL 202
N L R +VD NI + L
Sbjct: 441 NEYAL---HRS-----------------------------IVDHYNIPKTFDSDDLIPPY 468
Query: 203 QDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNEDPKEAL-LREYQE 261
D Y++ + + KNI++ R+ L R ++
Sbjct: 469 LDQY---------------FYSH------IGH--HLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 262 EIQRLKNLLNQRTVQPSSKLNDENQTR--EEYLNEEEDKLNNKRKRIMN-----ENHLSD 314
+I+ N S LN Q + + Y+ + + K I++ E +L
Sbjct: 506 KIRHDSTAWN----ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 315 AEKQKLLQEVESKQKAIEAEKKYTEELAKRI 345
++ LL + A+ AE + E A +
Sbjct: 562 SKYTDLL------RIALMAEDEAIFEEAHKQ 586
Score = 34.1 bits (77), Expect = 0.078
Identities = 34/272 (12%), Positives = 87/272 (31%), Gaps = 72/272 (26%)
Query: 2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYL-----------IRASYLEIY-- 48
+K++ + +I +S + + E ++ I L +
Sbjct: 347 WKHVNCDKLTT-----IIESSLNVLEP----AEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 49 ---QEEIRDLLDKDQSKRYELRENPDSGVYVKNLQ-SYICKNVKEIE---QVMQNGNFNR 101
+ ++ +++K ++ +S + + ++ K E ++ + N +
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 102 TIGATNMNEHSSRSHA---IF------IITIEMSDVREDSSMSQVRV------GKLNLVD 146
T ++ + + + IE + + V + K+
Sbjct: 458 TF----DSDDLIPPYLDQYFYSHIGHHLKNIEHPE--RMTLFRMVFLDFRFLEQKIRHDS 511
Query: 147 LAGSERQSKTGATGKRLKEASK-INLSLSALGNVISALVD-----GKNIHVPYRDSKLTR 200
A + S T ++LK I + +++A++D +N+ SK T
Sbjct: 512 TAWNASGSIL-NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC----SKYTD 566
Query: 201 LLQDSLGGNSKTLMIANIGPASYNYEESLTTL 232
LL+ IA + +EE+ +
Sbjct: 567 LLR-----------IALMAEDEAIFEEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 7e-07
Identities = 60/381 (15%), Positives = 115/381 (30%), Gaps = 131/381 (34%)
Query: 35 NKQYL--IRASYLEIYQEEIRDLLDKDQSKRYELRENPDSG--VYVKNLQSYICKNVKEI 90
Y +R Y + Y + DL+ EL V+ + L I
Sbjct: 166 TDDYFEELRDLY-QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN---------I 215
Query: 91 EQVMQNGNFNRT---------------IGATNMNEHSSRSHAIFIITIEMSDVREDSSMS 135
+ ++N + T IG + +H +++T ++
Sbjct: 216 LEWLENP--SNTPDKDYLLSIPISCPLIGVIQL------AH--YVVTAKLLG-------- 257
Query: 136 QVRVGKLNLVDLAGSERQSKTGATG--KRLKEASKINLSLSA---LGNVISALVD----G 186
G+L R GATG + L A I + S +V A+ G
Sbjct: 258 -FTPGEL---------RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 187 KNIHVPYRDSKLT-RLLQDSL--GGNSKTLMIANIGPASYNYEESLTTLRYANR----AK 239
+ Y ++ L +L+DSL + M++ E+ + N K
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN---LTQEQVQDYVNKTNSHLPAGK 364
Query: 240 NI----KNQPR--VNEDPKEALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLN 293
+ N + V P ++L L L R + S L +Q+R +
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSL--------YGLNLTL--RKAKAPSGL---DQSRIPF-- 409
Query: 294 EEEDKLNNKRK-RIMNE----------NHLSDAEKQKLLQEVESKQKAIEAE-------- 334
++RK + N + L A + +++ + A+
Sbjct: 410 -------SERKLKFSNRFLPVASPFHSHLLVPA-SDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 335 -------KKYTEELAKRINSM 348
+ + +++RI
Sbjct: 462 TFDGSDLRVLSGSISERIVDC 482
Score = 31.9 bits (72), Expect = 0.35
Identities = 35/200 (17%), Positives = 55/200 (27%), Gaps = 91/200 (45%)
Query: 16 KGVIPNSFDQIFSHIARTENK-----QYL-IRA----SYLEIYQEEI-RDLLDKDQS-KR 63
K P+ DQ S I +E K ++L + + L + I +DL+ + S
Sbjct: 395 KAKAPSGLDQ--SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 64 YELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITI 123
+++ P VY T
Sbjct: 453 KDIQI-P---VY----------------------------------------D-----TF 463
Query: 124 EMSDVREDSSMSQVRVGKLNLVDLAGS-----ERQSKTGAT-------GKRLKEASKINL 171
+ SD+R S S +VD E ++ AT G
Sbjct: 464 DGSDLRVLSG-SISE----RIVDCIIRLPVKWETTTQFKATHILDFGPG----------- 507
Query: 172 SLSALGNVISALVDGKNIHV 191
S LG + DG + V
Sbjct: 508 GASGLGVLTHRNKDGTGVRV 527
Score = 30.8 bits (69), Expect = 0.93
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 28/106 (26%)
Query: 193 YRDSKLTR--------LLQDSLG--------GNSKTLMIANIGPASYNYEESLTTLRYAN 236
Y+ SK + +D+ G N L I G E+ + + +
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFET 1695
Query: 237 RAKNIKNQPRVNEDPKEALLR---EYQEEIQRLKNLLN--QRTVQP 277
++ ++ E ++ LL+ Q T QP
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRSEKG------LLSATQFT-QP 1734
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 42.9 bits (101), Expect = 1e-04
Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Query: 252 KEALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNEEEDKLNNKRKRIMNENH 311
+ +++ +++I +++ N+ T + L + L EEE+K N K
Sbjct: 981 ADGKIKKMEDDILIMEDQNNKLTKE-RKLLEERVSDLTTNLAEEEEKAKNLTK------- 1032
Query: 312 LSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSMESKL 352
K K + + ++ E+K +EL K +E +
Sbjct: 1033 ----LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES 1069
Score = 31.7 bits (72), Expect = 0.39
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 2/96 (2%)
Query: 253 EALLREYQEEIQRLKNLLNQRTVQPSSKLND--ENQTREEYLNEEEDKLNNKRKRIMNEN 310
+A L + +EE+Q L T Q ++ L E ++ L E+ + R + +
Sbjct: 1087 KAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQK 1146
Query: 311 HLSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRIN 346
E + L E+E +++ K +
Sbjct: 1147 RDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
Score = 29.4 bits (66), Expect = 2.2
Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 253 EALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNEEEDKLNNKRKRIMNENHL 312
E +L E + I+ + Q + K+ + EE L EEE R+++ E
Sbjct: 926 EEILHEMEARIEEEEERSQQLQAE-KKKMQQQMLDLEEQLEEEE----AARQKLQLEKVT 980
Query: 313 SDAEKQKLLQEVESKQKAI---EAEKKYTEELAKRINSMESKL 352
+D + +K+ ++ + E+K L +R++ + + L
Sbjct: 981 ADGKIKKMEDDILIMEDQNNKLTKERK---LLEERVSDLTTNL 1020
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.7 bits (79), Expect = 0.020
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 287 TREEYLNEEEDKLNNKRK-RIMNENHLS--DAEKQKLLQE-VESKQKAIEA-EKKYTEEL 341
+ + L +E + + RK R L DA + + QE E +K +E ++ +E++
Sbjct: 75 AQADRLTQEPESI---RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQV 131
Query: 342 AKRINSM---ESKLLQ 354
K + + Q
Sbjct: 132 EKNKINNRIADKAFYQ 147
Score = 34.0 bits (77), Expect = 0.035
Identities = 15/86 (17%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 241 IKNQPRVNEDPKEALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNEEEDKLN 300
I R+ ++P E++ R+++EE QR + L + + + ++ L E + +
Sbjct: 74 IAQADRLTQEP-ESI-RKWREE-QRKR--LQELDAASKVMEQEWREKAKKDLEEWNQRQS 128
Query: 301 NKRKRIMNENHLSDAEKQKLLQEVES 326
+ ++ N ++D Q+ ++
Sbjct: 129 EQVEKNKINNRIADKA---FYQQPDA 151
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A
{Homo sapiens}
Length = 386
Score = 35.1 bits (80), Expect = 0.026
Identities = 12/124 (9%), Positives = 43/124 (34%), Gaps = 7/124 (5%)
Query: 234 YANRAKNIKNQPRVNEDPKEALLREYQEEIQRLKNLLNQR-----TVQPSSKLNDENQTR 288
Y + QP+ + L YQ + ++++ + V+ S +++DE +
Sbjct: 262 YEAIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKESQRMSDEGRMV 321
Query: 289 EEYLNEEEDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSM 348
++ + + + E + ++ + Q + + + + + +++
Sbjct: 322 QDEADGIRRRCRVVGFALQAEMNHFHQRRELDFK--HMMQNYLRQQILFYQRVGQQLEKT 379
Query: 349 ESKL 352
Sbjct: 380 LRMY 383
>3nzt_A Glutamate--cysteine ligase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha and
beta proteins; HET: AMP; 2.00A {Francisella tularensis
subsp}
Length = 525
Score = 31.7 bits (71), Expect = 0.33
Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 253 EALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNEEEDKLNNKRKRIMNENHL 312
+ + +EY + ++ K + + PS+K+ R+ + ++ + + L
Sbjct: 423 KKMPKEYLDAVEIQKRKVLDISQTPSAKI--IELARQHGYKKFILDISRRVSQQFRSYEL 480
Query: 313 SDAEKQKLLQEVES---KQKAIEAEKK 336
A KL + +K + A K
Sbjct: 481 PAAIVAKLKDQAGQSVAAEKELVANDK 507
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 31.7 bits (71), Expect = 0.34
Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 20/144 (13%)
Query: 193 YRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNEDPK 252
YR KL + + + N + A E + ++ + K
Sbjct: 290 YRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEK 349
Query: 253 EALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNEEEDKLNNKRKRIMNENHL 312
L++ + E+QR + + L + +L KR++ +E
Sbjct: 350 VQKLKDSEAELQRRHEQMKKN------------------LEAQHKELEEKRRQFEDE--K 389
Query: 313 SDAEKQKLLQEVESKQKAIEAEKK 336
++ E Q+ + E ++ + +E KK
Sbjct: 390 ANWEAQQRILEQQNSSRTLEKNKK 413
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed
4-stranded beta sheet, 2-stranded antiparallel sheet;
NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Length = 165
Score = 30.2 bits (69), Expect = 0.59
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 248 NEDPKEALLREYQEEI 263
EDP+ A +RE +EE
Sbjct: 50 GEDPRNAAIRELREET 65
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 30.9 bits (69), Expect = 0.64
Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 1/117 (0%)
Query: 227 ESLTTLRYANRAKNIKNQPRVNEDPKEALLREYQEEIQRLKN-LLNQRTVQPSSKLNDEN 285
+S+ + R ++ E + + E QRL+ + Q ++
Sbjct: 641 QSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAE 700
Query: 286 QTREEYLNEEEDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEAEKKYTEELA 342
+ R+E L E + + S AE ++ E Q ++A+ E A
Sbjct: 701 KARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEA 757
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Length = 140
Score = 29.9 bits (68), Expect = 0.66
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 248 NEDPKEALLREYQEEI 263
+E ++AL+RE +EE+
Sbjct: 47 DESQRQALVRELREEL 62
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.00A {Bacteroides fragilis}
Length = 140
Score = 29.5 bits (67), Expect = 0.71
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 248 NEDPKEALLREYQEEI 263
E +EAL RE EE+
Sbjct: 46 GESLQEALQREIMEEM 61
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR
{Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A*
1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Length = 129
Score = 29.4 bits (67), Expect = 0.74
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 248 NEDPKEALLREYQEEI 263
E P++A++RE QEE+
Sbjct: 43 GETPEQAVVRELQEEV 58
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious
diseases, hydrol structural genomics; 2.10A {Bartonella
henselae}
Length = 158
Score = 29.7 bits (67), Expect = 0.81
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 248 NEDPKEALLREYQEEI 263
E P+ +L+RE +EE+
Sbjct: 68 GETPEASLIRELEEEL 83
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc;
NMR {Escherichia coli} PDB: 2kdw_A
Length = 164
Score = 29.8 bits (68), Expect = 0.88
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 248 NEDPKEALLREYQEEI 263
E ++A+ RE EE+
Sbjct: 43 GESAEQAMYRELFEEV 58
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.1 bits (67), Expect = 0.98
Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 33/96 (34%)
Query: 9 SKESAESKGVIP-----NSFDQIFSHIARTE--NKQYLIRASYLEIYQ---------EEI 52
S +S + V P + + + T+ K++L+ A E ++ E +
Sbjct: 132 SVDSDDKAKVPPLIRIVSGLEL-----SDTKQKGKKFLVIAY--EPFENIAIELPPNEIL 184
Query: 53 RDLLDKDQSKRYELRE--------NPDSGVYVKNLQ 80
+ + + E + S +Y +Q
Sbjct: 185 FSENNDMDNNNDGVDELNKKCTFWDAISKLYY--VQ 218
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer,
putative NUDI hydrolase, structural genomics, unknown
function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1
PDB: 1jrk_A 1k26_A
Length = 156
Score = 29.1 bits (65), Expect = 1.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 248 NEDPKEALLREYQEE 262
NE P EA+ RE++EE
Sbjct: 35 NETPIEAVKREFEEE 49
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 29.9 bits (68), Expect = 1.2
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 1 MYKYMIIGSKESAESKGVIPNSFD 24
YK+++ +K E++G++ N+F
Sbjct: 193 AYKWLLHNTKRYKEAEGILVNTFF 216
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase;
1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A*
3ffu_A*
Length = 153
Score = 28.8 bits (65), Expect = 1.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 248 NEDPKEALLREYQEEI 263
E P+EAL RE EE+
Sbjct: 60 GETPEEALARELNEEL 75
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 29.7 bits (66), Expect = 1.6
Identities = 22/117 (18%), Positives = 50/117 (42%), Gaps = 14/117 (11%)
Query: 238 AKNIKNQPRVNEDPKEALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNEEED 297
+ ++P ++ EA E+ E+Q+ + + Q VQ + E + E+ L+E+ D
Sbjct: 310 DTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFD 369
Query: 298 KLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSMESKLLQ 354
+L Q +++E K+K+++ E ++ ++S+ Q
Sbjct: 370 RLKKL--------------HQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQ 412
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga
maritima} PDB: 2gaj_A*
Length = 633
Score = 29.8 bits (68), Expect = 1.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 40 IRASYLEIYQEEIRDLLDKDQSKRYEL 66
IR + + + EE L+ DQ K YEL
Sbjct: 337 IRPTNVFMTPEEAGKYLNSDQKKLYEL 363
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone,
triacylglycerol hydrolase, all alpha helix protein, A/B
hydrolase fold; 1.85A {Burkholderia glumae} SCOP:
a.137.15.1
Length = 332
Score = 29.4 bits (65), Expect = 1.7
Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 25/150 (16%)
Query: 226 EESLTTLRYANRAKNIKNQPRVNEDPKEA--LLREYQEEIQRLKNLLNQRTVQPSS---- 279
E + L A + I Q + EA + R Y+ L L V
Sbjct: 98 ELTPAALD-ALVRREIAAQLDGSPAQAEALGVWRRYRAYFDALAQLPGDGAVLGDKLDPA 156
Query: 280 ----KLNDENQTREEYLNEEE----------DKLNNKRKRIMNENHLSDAEKQKLLQEVE 325
L+ + L E + + +R RI N+ LS +K L ++
Sbjct: 157 AMQLALDQRAALADRTLGEWAEPFFGDEQRRQRHDLERIRIANDTTLSPEQKAARLAALD 216
Query: 326 SKQ----KAIEAEKKYTEELAKRINSMESK 351
++ +A +A ++ +I ++
Sbjct: 217 AQLTPDERAQQAALHAQQDAVTKIADLQKA 246
>3rnl_A Sulfotransferase; structural genomics, PSI-biology, midwest center
for structu genomics, MCSG, alpha-beta-alpha sandwich;
HET: MSE; 1.75A {Alicyclobacillus acidocaldarius subsp}
Length = 311
Score = 29.4 bits (65), Expect = 1.8
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 233 RYANRAKNIKNQ-PRVNEDPKEALLREYQEEIQRLKNLLNQ 272
R NRAK++ + D +E L + ++ RL+ L+++
Sbjct: 256 RLGNRAKSMVLGRMEMEPDLREELTAFFAPDVARLEALIHR 296
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT
NEW YORK SGX research center for structural genomics,
nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum}
Length = 144
Score = 28.4 bits (64), Expect = 1.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 248 NEDPKEALLREYQEEI 263
E P+ AL+RE EE+
Sbjct: 47 GETPEAALVRELAEEL 62
>3uan_A Heparan sulfate glucosamine 3-O-sulfotransferase; alpha/beta motif,
CO-FACT PAPS/PAP, heparan sulfate oligosaccharides,
golgi-localized transferase; HET: A3P NGY BDP SGN IDS;
1.84A {Mus musculus} PDB: 1vkj_A* 1zrh_A*
Length = 269
Score = 29.0 bits (64), Expect = 2.0
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 242 KNQPRVNEDPKEALLREYQEEIQRLKNLLNQR 273
+ P+V+ + L + E ++ L+ +
Sbjct: 234 RAHPQVDPKLLDKLHEYFHEPNKKFFKLVGRT 265
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 29.1 bits (66), Expect = 2.0
Identities = 14/96 (14%), Positives = 27/96 (28%), Gaps = 28/96 (29%)
Query: 274 TVQPSSKLNDENQTR---EEYLNEEEDKLNNKRKRIMNENH------------------L 312
V+PS L D + E+D R + L
Sbjct: 109 QVKPSYGLTDSEIASMIKDSMSYAEQDV--KARMLAEQKVEAARVLESLHGALAADAALL 166
Query: 313 SDAEKQKLLQEVESKQKAIEAE-----KKYTEELAK 343
S AE+Q + + + + ++ + + K
Sbjct: 167 SAAERQVIDDAAAHLSEVAQGDDVDAIEQAIKNVDK 202
>3bd9_A Heparan sulfate glucosamine 3-O-sulfotransferase 5; heparan sulfate
biosynthesis, substrate specificity, glycoprotein, golgi
apparatus, membrane; HET: A3P; 2.30A {Homo sapiens}
Length = 280
Score = 29.0 bits (64), Expect = 2.1
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 242 KNQPRVNEDPKEALLREYQEEIQRLKNLLNQR 273
+ P V+ L + + Q+ + +
Sbjct: 245 RIHPEVDPSVITKLRKFFHPFNQKFYQITGRT 276
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase,
SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A
{Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13
a.187.1.1 PDB: 2nog_A
Length = 304
Score = 28.8 bits (64), Expect = 2.5
Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 242 KNQPRVNEDPKEALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNEEEDKLNN 301
P+ PK+ +++++Q RL LL+Q + + E ++
Sbjct: 24 PKAPKAPRPPKQPIVQDFQFFPPRLFELLDQEIYYFRKTVGYKVPKNTELGSDATKVQRE 83
Query: 302 KRKRIMNENHLSD---AEKQKLLQE 323
++++I L++ EK+ LL +
Sbjct: 84 EQRKIDEAEPLTEEEIQEKENLLSQ 108
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics,
structural genomics consortium, SGC, NU MUTT-like,
hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB:
1iry_A 3zr0_A* 3zr1_A
Length = 176
Score = 28.5 bits (64), Expect = 2.5
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 248 NEDPKEALLREYQEE 262
E ++ RE QEE
Sbjct: 62 GETIEDGARRELQEE 76
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Length = 250
Score = 28.6 bits (63), Expect = 3.0
Identities = 14/83 (16%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 272 QRTVQPSSKLNDENQTREEYLNEEEDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAI 331
+RT + S + + RE + L + K ++ +A Q+ L ++E +K +
Sbjct: 120 KRTSRFLSGIINFIHFREACRETYMEFL-WQYKSSADKMQQLNAAHQEALMKLERLEKEV 178
Query: 332 EAEKKYTEELAKRINSMESKLLQ 354
+ + T A + + ++ +
Sbjct: 179 DEDTTVTIPSAVYVAQLYHQVSK 201
>1t8t_A Heparan sulfate D-glucosaminyl 3-O- sulfotransferase 3A1;
alpha-beta motif, substrate-binding cleft; HET: A3P CIT;
1.85A {Homo sapiens} SCOP: c.37.1.5 PDB: 1t8u_A*
Length = 271
Score = 28.6 bits (63), Expect = 3.3
Identities = 3/29 (10%), Positives = 9/29 (31%)
Query: 245 PRVNEDPKEALLREYQEEIQRLKNLLNQR 273
P ++ + L Y+ + +
Sbjct: 238 PEIDREVVRRLREFYRPFNLKFYQMTGHD 266
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 1.70A {Methanosarcina mazei}
Length = 153
Score = 27.7 bits (62), Expect = 3.9
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 248 NEDPKEALLREYQEEI 263
+E KE + RE EE
Sbjct: 48 DESLKEGVAREVWEET 63
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 28.6 bits (65), Expect = 3.9
Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 18/106 (16%)
Query: 254 ALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNEEEDKLNNKRKRIMNENHLS 313
L++E + EI++ K V + + + + + L++ +++ E
Sbjct: 491 KLVKELEREIEKWKEFYKSERVSVAVGGDTRSYSVATLMTMNY-TLDDVKEKFGYEVPQH 549
Query: 314 DAEKQKLLQEVESKQKAIEAEKKYT------EELAKRINSMESKLL 353
K +EVE I+ KY +L +++ +E +
Sbjct: 550 PYVK----EEVE-----IQL--KYEPYIERERKLNEKLKKLEDTKI 584
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II),
NYSGXRC, 11180K, structural genomics; 2.00A
{Lactobacillus brevis atcc 367}
Length = 161
Score = 27.7 bits (62), Expect = 3.9
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 248 NEDPKEALLREYQEE 262
E A +RE EE
Sbjct: 49 GEPCATAAIREVFEE 63
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica
serovar typhimurium STR. unknown function; HET: PO4;
1.75A {Salmonella enterica subsp} PDB: 3n77_A
Length = 165
Score = 27.9 bits (62), Expect = 3.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 248 NEDPKEALLREYQEEI 263
E +EAL RE +EE+
Sbjct: 67 GERIEEALRREIREEL 82
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; 1.63A {Streptococcus pneumoniae}
Length = 154
Score = 27.7 bits (62), Expect = 3.9
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 248 NEDPKEALLREYQEEI 263
NE ++A++RE +EE+
Sbjct: 51 NESTEDAVVREVKEEL 66
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR
{Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Length = 171
Score = 27.3 bits (61), Expect = 5.2
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 245 PRVNEDPKEALLREYQEEI 263
+ E +EA RE +EE+
Sbjct: 72 VQSGETYEEAFRREAREEL 90
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol
3-phosphate binding, membrane protein; HET: ITP; 2.20A
{Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A*
1hyj_A
Length = 125
Score = 26.8 bits (59), Expect = 5.3
Identities = 7/40 (17%), Positives = 20/40 (50%)
Query: 313 SDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSMESKL 352
+ E++ LL+ + IE + EL +++++ + +
Sbjct: 2 NQDERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAV 41
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for
structural GENO JCSG, protein structure initiative,
PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Length = 149
Score = 27.2 bits (60), Expect = 5.6
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 248 NEDPKEALLREYQEEI 263
E E RE EE+
Sbjct: 43 EEAISETAKRESIEEL 58
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure
initiative, midwest center for structural genomics,
MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Length = 155
Score = 27.4 bits (61), Expect = 5.6
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 248 NEDPKEALLREYQEE 262
+E E+++RE EE
Sbjct: 48 DEAFAESVIREIYEE 62
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET:
DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1
h.1.3.1
Length = 89
Score = 26.3 bits (58), Expect = 6.0
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 335 KKYTEELAKRINSMESKLLQ 354
+ + E+ R+ +E L
Sbjct: 44 RAHLTEVESRLERLEQLFLL 63
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis,
structural genomics, PSI, structure initiative; HET:
1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Length = 148
Score = 27.0 bits (60), Expect = 6.6
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 248 NEDPKEALLREYQEEI 263
E +EA+ RE EE+
Sbjct: 53 TETKEEAIHREVLEEL 68
>3b5q_A Putative sulfatase YIDJ; NP_810509.1, structural genomics, joint
center for structural genomics, JCSG; HET: EPE; 2.40A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 482
Score = 27.7 bits (62), Expect = 6.8
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 249 EDPKE----ALLREYQEEIQRLKNLLNQRTVQ-----PSSKLNDENQTREEYLNEEEDKL 299
+DP E A +Y + + + LL+ + S K++ + + R +
Sbjct: 413 KDPGERKNLAKDPKYSKILAEHRALLDDYITRSKDDYRSLKVDADPRCRNHTPGYPSHEG 472
Query: 300 NNKRK 304
R+
Sbjct: 473 PGARE 477
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 27.6 bits (60), Expect = 7.5
Identities = 16/112 (14%), Positives = 34/112 (30%), Gaps = 14/112 (12%)
Query: 249 EDPKEALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNEEEDKLNNKRKRIMN 308
A + E + LK+LL+ L++ + RE N+ + + + +
Sbjct: 541 PSANPAKTMQGSEVVNVLKSLLS--------NLDEVKKEREGLENDLKSVNFDMTSKFLT 592
Query: 309 ENHLSDA------EKQKLLQEVESKQKAIEAEKKYTEELAKRINSMESKLLQ 354
+L + ++ K E L K I + +
Sbjct: 593 ALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSK 644
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.50A {Bacillus
halodurans}
Length = 188
Score = 27.0 bits (60), Expect = 7.7
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 248 NEDPKEALLREYQEE 262
E E + REY EE
Sbjct: 38 GESILETVKREYWEE 52
>4dmv_A Toxin A, TCDA; transferase; 1.50A {Clostridium difficile} PDB:
4dmw_A* 3ss1_A 3srz_A
Length = 556
Score = 27.4 bits (59), Expect = 8.9
Identities = 11/110 (10%), Positives = 38/110 (34%), Gaps = 5/110 (4%)
Query: 223 YNYEESLTTLRYANRAKNIKNQPRVNEDPKEALLREYQEEIQRLKNLLNQRTVQPSSKLN 282
+++ + + +K + + P+E + + L +L
Sbjct: 5 HHHHDDDDKGSMSLISKEELIKLAYSIRPRENEYKTILTNLDEYNKLTTNNNENKYLQLK 64
Query: 283 DENQTREEYLNEEEDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIE 332
N++ + ++N+ + N+ ++L ++++ S +E
Sbjct: 65 KLNESIDVFMNKYKTSSRNR-----ALSNLKKDILKEVILIKNSNTSPVE 109
>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1
d.17.6.4 PDB: 2cx1_A* 1zs7_A
Length = 187
Score = 26.8 bits (59), Expect = 9.1
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 307 MNENHLSDAEKQKLLQEVESKQKAIEAEKKYTEELAK 343
+ LS E++ LL+ ++ I +K L K
Sbjct: 13 LEARALSKKERRSLLERLKPYYTRIPFSEKADLRLVK 49
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 27.2 bits (59), Expect = 9.3
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 13/100 (13%)
Query: 237 RAKNIKNQPRVNEDPKEALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNEEE 296
AK + R NE E R YQE +++L + VQ L ++ +T L E+E
Sbjct: 502 SAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQ---LLKEQERTLALKLQEQE 558
Query: 297 DKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEAEKK 336
L ++ E + + E++ Q + K
Sbjct: 559 QLLKEGFQK----------ESRIMKNEIQDLQTKMRRRKA 588
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.127 0.331
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,971,109
Number of extensions: 294899
Number of successful extensions: 1092
Number of sequences better than 10.0: 1
Number of HSP's gapped: 950
Number of HSP's successfully gapped: 167
Length of query: 355
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 260
Effective length of database: 4,049,298
Effective search space: 1052817480
Effective search space used: 1052817480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)