RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8840
(355 letters)
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 222 bits (566), Expect = 9e-71
Identities = 111/249 (44%), Positives = 157/249 (63%), Gaps = 14/249 (5%)
Query: 4 YMIIGSKESAESKGVIPNSFDQIFSHIART--ENKQYLIRASYLEIYQEEIRDLLDKDQS 61
Y ++G +E + +G+IP + +FS I T +N Y + SY+EIY E +RDLL+
Sbjct: 102 YTMMGKQEKDQ-QGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNK 160
Query: 62 KRYELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFII 121
+RE+P G YV++L + +I+ +M +GN RT+ ATNMNE SSRSHA+F I
Sbjct: 161 GNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNI 220
Query: 122 TIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVIS 181
+++++ +V K++LVDLAGSER TGA G RLKE + IN SL+ LG VIS
Sbjct: 221 IFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVIS 280
Query: 182 ALVDG-----------KNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLT 230
AL + K +PYRDS LT LL+++LGGNS+T M+A + PA NY+E+L+
Sbjct: 281 ALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLS 340
Query: 231 TLRYANRAK 239
TLRYA+RAK
Sbjct: 341 TLRYADRAK 349
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 217 bits (553), Expect = 1e-68
Identities = 127/256 (49%), Positives = 173/256 (67%), Gaps = 9/256 (3%)
Query: 14 ESKGVIPNSFDQIFSHIAR-TENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDS 72
+ +GVIP +QIF+ I N +Y +R SY+EIY E IRDLL Q+ + E +
Sbjct: 106 DGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAP-QNDNLPVHEEKNR 164
Query: 73 GVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDS 132
GVYVK L +V+E+ +VM+ G R + ATNMN+ SSRSH+IF+ITI +++
Sbjct: 165 GVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITIT----QKNV 220
Query: 133 SMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIHVP 192
+ G+L LVDLAGSE+ KTGA+G+ L+EA KIN SLSALG VI+AL DGK+ HVP
Sbjct: 221 ETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVP 280
Query: 193 YRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNEDPK 252
YRDSKLTR+LQ+SLGGNS+T +I N P+SYN E+L+TLR+ RAK+IKN+ +VN +
Sbjct: 281 YRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELS 340
Query: 253 EALLREYQEEIQRLKN 268
A L+ + + + K
Sbjct: 341 PAELK---QMLAKAKT 353
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 209 bits (531), Expect = 1e-65
Identities = 113/241 (46%), Positives = 154/241 (63%), Gaps = 7/241 (2%)
Query: 8 GSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLL--DKDQSKRYE 65
+ E G+IP + QIF + ++ ++ S LEIY EE+ DLL D S+R +
Sbjct: 108 YTWEEDPLAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQ 166
Query: 66 LRENP--DSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITI 123
+ ++P GV +K L+ N E+ Q+++ G RT AT MN +SSRSH++F +TI
Sbjct: 167 MFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI 226
Query: 124 EMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISAL 183
M + D V++GKLNLVDLAGSE ++GA KR +EA IN SL LG VI+AL
Sbjct: 227 HMKETTIDGE-ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 285
Query: 184 VDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKN 243
V+ HVPYR+SKLTR+LQDSLGG ++T +IA I PAS N EE+L+TL YA+RAKNI N
Sbjct: 286 VERTP-HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 344
Query: 244 Q 244
+
Sbjct: 345 K 345
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 207 bits (528), Expect = 2e-65
Identities = 110/237 (46%), Positives = 145/237 (61%), Gaps = 7/237 (2%)
Query: 6 IIGSKESAESKGVIPNSFDQIFSHIART-ENKQYLIRASYLEIYQEEIRDLLDKDQSKRY 64
+ G E G+IP IF++I EN ++ I+ SY EIY ++IRDLLD
Sbjct: 93 MEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLD-VSKTNL 151
Query: 65 ELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIE 124
+ E+ + YVK + E+ + G NR + TNMNEHSSRSH+IF+I ++
Sbjct: 152 SVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVK 211
Query: 125 MSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALV 184
+E++ Q GKL LVDLAGSE+ SKTGA G L EA IN SLSALGNVISAL
Sbjct: 212 ----QENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALA 267
Query: 185 DGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNI 241
+G +VPYRDSK+TR+LQDSLGGN +T ++ P+SYN E+ +TL + RAK I
Sbjct: 268 EGST-YVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 323
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 206 bits (525), Expect = 1e-64
Identities = 89/243 (36%), Positives = 135/243 (55%), Gaps = 17/243 (6%)
Query: 14 ESKGVIPNSFDQIFS--HIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYEL----- 66
G+IP++ IF+ + +T+ Y + ++EIY E I DLL D + + +
Sbjct: 103 PGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLK 162
Query: 67 ----RENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIIT 122
+ + N+ S ++ + +E +++ N R+ +T NEHSS SH+IFII
Sbjct: 163 HEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIH 222
Query: 123 IEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISA 182
+ S+ + G LNLVDLAGSER + + G RL+E IN SLS LG+VI A
Sbjct: 223 LSGSN----AKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHA 278
Query: 183 LV--DGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKN 240
L D H+P+R+SKLT LLQ SL G+SKTLM NI P+S + E+L +LR+A++ +
Sbjct: 279 LGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 338
Query: 241 IKN 243
+
Sbjct: 339 TRL 341
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 194 bits (493), Expect = 5e-60
Identities = 80/238 (33%), Positives = 122/238 (51%), Gaps = 12/238 (5%)
Query: 5 MIIGSKESAESKGVIPNSFDQIF-SHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKR 63
+ +++ G+ + IF ++ I S+ EIY ++ DLL K +
Sbjct: 103 LGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK--M 160
Query: 64 YELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITI 123
EN V VK+L+ +E+ M +G R IG + N+ SSRSHAI I +
Sbjct: 161 VAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDL 220
Query: 124 EMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGK-RLKEASKINLSLSALGNVISA 182
+ + +GK+ +DLAGSER + T + K + + IN SL AL I A
Sbjct: 221 KDIN-------KNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRA 273
Query: 183 LVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKN 240
+ D H+P+RDS+LT++L+D G SK++MIANI P E++L TLRY++R KN
Sbjct: 274 M-DSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKN 330
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 189 bits (480), Expect = 1e-57
Identities = 103/270 (38%), Positives = 157/270 (58%), Gaps = 11/270 (4%)
Query: 19 IPNSFDQIFSHIARTENK-QYLIRASYLEIYQEEIRDLLDKDQSKRYEL--RENPDSGVY 75
P + ++F + + NK + ++A +E+YQ+ + DLL Q+KR +L +++ V
Sbjct: 102 TPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVS 161
Query: 76 VKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMS 135
V+N+ +E++ ++Q G+ R T MNE SSRSH I + IE +++
Sbjct: 162 VENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNL----QTQ 217
Query: 136 QVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIHVPYRD 195
+ GKL+ VDLAGSER K+G+ G +LKEA IN SLSALG+VISAL N H+PYR+
Sbjct: 218 AIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSS-GNQHIPYRN 276
Query: 196 SKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNEDPKEAL 255
KLT L+ DSLGGN+KTLM NI PA N +E+ +L YA+R ++I N P N KE
Sbjct: 277 HKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKE-- 334
Query: 256 LREYQEEIQRLKNLLNQRT-VQPSSKLNDE 284
+ ++ + K ++ + ++ DE
Sbjct: 335 VARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 185 bits (469), Expect = 5e-56
Identities = 84/242 (34%), Positives = 122/242 (50%), Gaps = 16/242 (6%)
Query: 4 YMIIGSKESAESKGVIPNSFDQIFSHIARTE--NKQYLIRASYLEIYQEEIRDLLDKDQS 61
+ K SKG+ + +F + N + ++ EIY ++ DLL+K
Sbjct: 132 GGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAK 191
Query: 62 KRYELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFII 121
R E+ V V LQ Y+ ++ +++ G+ RT G T N +SSRSHA F I
Sbjct: 192 LRV--LEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQI 249
Query: 122 TIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKT-GATGKRLKEASKINLSLSALGNVI 180
+ K +LVDLAG+ER + T A + E ++IN SL AL I
Sbjct: 250 LLRTKGRLHG---------KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECI 300
Query: 181 SALVDGKNIHVPYRDSKLTRLLQDS-LGGNSKTLMIANIGPASYNYEESLTTLRYANRAK 239
AL K H P+R+SKLT++L+DS +G NS+T MIA I P + E +L TLRYA+R K
Sbjct: 301 RALGQNKA-HTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 359
Query: 240 NI 241
+
Sbjct: 360 EL 361
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 173 bits (438), Expect = 2e-51
Identities = 85/229 (37%), Positives = 125/229 (54%), Gaps = 12/229 (5%)
Query: 15 SKGVIPNSFDQIFSHIART--ENKQYLIRASYLEIYQEEIRDLLDKD-QSKRYELRENPD 71
S GVIP + D +F I +Y I+A++LEIY E + DLL + + + +N
Sbjct: 148 SVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNK 207
Query: 72 SGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVRED 131
+ +YV N+ + + +M NR +T NE SSRSHA+ + +
Sbjct: 208 NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELI----GRH 263
Query: 132 SSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIHV 191
+ ++ VG +NLVDLA S++ T R+ E IN SLS L NVI AL+ ++ H+
Sbjct: 264 AEKQEISVGSINLVDLA----GSESPKTSTRMTETKNINRSLSELTNVILALLQKQD-HI 318
Query: 192 PYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKN 240
PYR+SKLT LL SLGGNSKTLM N+ P ++ES+ +LR+A +
Sbjct: 319 PYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS 367
Score = 28.3 bits (62), Expect = 1.7
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 12/95 (12%)
Query: 256 LREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNEEED-KLNNK---RKRIMNENH 311
LR+ EE+ R +L N R+E N D + N + R R E+
Sbjct: 1 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESE 60
Query: 312 LSDA--------EKQKLLQEVESKQKAIEAEKKYT 338
+ E LQ ++++ K+ ++ ++
Sbjct: 61 ENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFS 95
>d1uzea_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Human
(Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 39.4 bits (91), Expect = 6e-04
Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 4/106 (3%)
Query: 248 NEDPKEALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNEEEDKLNNKRKRIM 307
+E + EY Q + N + ++ + E N + K
Sbjct: 1 DEAEASKFVEEYDRTSQVVWNEYAEANWNYNTNITTETSKILLQKNMQIANHTLKYGTQA 60
Query: 308 ---NENHLSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSMES 350
+ N L + ++++++V+ ++A ++ EE K + ME+
Sbjct: 61 RKFDVNQLQNTTIKRIIKKVQDLERAALPAQEL-EEYNKILLDMET 105
>d1vkja_ c.37.1.5 (A:) Heparan sulfate 3-O-sulfotransferase {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 29.1 bits (64), Expect = 0.78
Identities = 5/41 (12%), Positives = 14/41 (34%)
Query: 233 RYANRAKNIKNQPRVNEDPKEALLREYQEEIQRLKNLLNQR 273
+ P+V+ + L + E ++ L+ +
Sbjct: 214 DRCLHESKGRAHPQVDPKLLDKLHEYFHEPNKKFFKLVGRT 254
>d2p0ta1 a.290.1.1 (A:22-169) Uncharacterized protein PSPTO4464
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 148
Score = 28.2 bits (63), Expect = 0.90
Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 255 LLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNEEEDKLNNKRKRIMNENHLSD 314
+ + QE I L + L+ T Q + + ++ + R+ + ++ L + + E D
Sbjct: 55 MRDQDQEAILVLLDQLDASTRQYNERFHNLERWRDRLIAGDDADLE----KFVIEYP--D 108
Query: 315 AEKQKLLQEVESKQKAIEAEKK 336
A++Q+L + Q + K
Sbjct: 109 ADRQQLRSLIRQAQHEVARNKP 130
>d2fhza1 d.311.1.1 (A:27-109) Colicin E5 immunity protein ImmE5
{Escherichia coli [TaxId: 562]}
Length = 83
Score = 26.8 bits (59), Expect = 1.1
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 100 NRTIGATNMNEHSSRSHAIFIITIEM 125
N + N+ + + FIIT++M
Sbjct: 58 NNRLAIENIKDDIENGYTAFIITLKM 83
>d1t8ta_ c.37.1.5 (A:) Heparan sulfate glucosamine
3-O-sulfotransferase 3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 28.0 bits (61), Expect = 1.6
Identities = 3/32 (9%), Positives = 10/32 (31%)
Query: 242 KNQPRVNEDPKEALLREYQEEIQRLKNLLNQR 273
+ P ++ + L Y+ + +
Sbjct: 235 RTHPEIDREVVRRLREFYRPFNLKFYQMTGHD 266
>d1t3wa_ a.236.1.1 (A:) DNA primase DnaG, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 134
Score = 27.2 bits (60), Expect = 1.7
Identities = 10/94 (10%), Positives = 24/94 (25%), Gaps = 4/94 (4%)
Query: 240 NIKNQPRVNEDPKEALLREY---QEEIQRLKNLLNQRTVQPSSKLNDE-NQTREEYLNEE 295
+ N L E+ L+ L + + + +
Sbjct: 41 ELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSMWDDIADKNIAEQTFTDSLNHMFDSL 100
Query: 296 EDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQK 329
+ + + LS+ E+ +L + K
Sbjct: 101 LELRQEELIARERTHGLSNEERLELWTLNQELAK 134
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 27.7 bits (61), Expect = 1.8
Identities = 15/116 (12%), Positives = 37/116 (31%), Gaps = 1/116 (0%)
Query: 226 EESLTTLRYANRAKNIKNQPRVNEDPKEALLREYQEEIQRLKNLLNQRTVQPSSKLNDEN 285
L RA+ + + K A L++ +++ + Q ++ +
Sbjct: 161 AALDAQLTPDERAQQAALHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGPEAAARAAQM 220
Query: 286 QTREEYLNEEEDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEAEKKYTEEL 341
Q +E +R RI + L+ ++ + ++ + E L
Sbjct: 221 QQDDEAWQTRYQAYAAERDRIAAQG-LAPQDRDARIAQLRQQTFTAPGEAIRAASL 275
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 26.6 bits (58), Expect = 4.0
Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 8/109 (7%)
Query: 235 ANRAKNIKNQPRVNEDPKEALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNE 294
+ K K+ +LR+ R +R + S E +++ E
Sbjct: 16 WRKFKLESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMSIQEYELIHQDK---E 72
Query: 295 EEDKLNNKRKRIMNENHLSDAEKQKL--LQEVESKQ---KAIEAEKKYT 338
+E L R++ M + H + + + E+E+ + + IE E+K T
Sbjct: 73 DEGCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVT 121
>d1nsta_ c.37.1.5 (A:) Heparan sulfate
N-deacetylase/N-sulfotransferase domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 301
Score = 26.4 bits (57), Expect = 5.0
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 245 PRVNEDPKEALLREYQEEIQRLKNLLNQRTVQPSSKLNDE 284
P ++ D + L Y++ L LL + + L ++
Sbjct: 260 PEMDLDSRAFLKDYYRDHNIELSKLLYKMGQTLPTWLRED 299
>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding
protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}
Length = 321
Score = 26.1 bits (56), Expect = 7.1
Identities = 14/105 (13%), Positives = 37/105 (35%), Gaps = 3/105 (2%)
Query: 239 KNIKNQPRVNEDPKEALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNEE--- 295
K + + + ++E+ RL+ + Q+ + +KL + +Q + +
Sbjct: 15 KKVHENLEELQKKLDHTSFAHKEDRDRLEAQIAQKEQEQKAKLAEYDQKVQNEFDARERA 74
Query: 296 EDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEAEKKYTEE 340
E + R E + + L + + ++ +EE
Sbjct: 75 EREREAARGDAAAEKQRLASLLKDLEDDASGYNRLRPSKPMLSEE 119
>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide
reductase {Lactobacillus leichmannii [TaxId: 28039]}
Length = 721
Score = 26.0 bits (56), Expect = 7.9
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 230 TTLRYANRAKNIKNQPRVNEDPKEALLREYQEEIQRLKNLLNQRTVQPS 278
T R NI PR+ + P L + EE +RL L+ PS
Sbjct: 48 TVKRVVE--GNINLDPRLQDSPSLELKQSLTEEAERLYKLIYGLGATPS 94
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 24.4 bits (53), Expect = 9.7
Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 244 QPRVNEDPKEALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNEEEDKLNNKR 303
P+ PK+ +++++Q RL LL+Q + + E ++ ++
Sbjct: 17 APKAPRPPKQPIVQDFQFFPPRLFELLDQEIYYFRKTVGYKVPKNTELGSDATKVQREEQ 76
Query: 304 KRIMNENHLSD---AEKQKLLQE 323
++I L++ EK+ LL +
Sbjct: 77 RKIDEAEPLTEEEIQEKENLLSQ 99
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.127 0.331
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,182,727
Number of extensions: 54644
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 53
Length of query: 355
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 269
Effective length of database: 1,226,816
Effective search space: 330013504
Effective search space used: 330013504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.5 bits)