Query psy8843
Match_columns 76
No_of_seqs 104 out of 682
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 20:33:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0241|consensus 98.7 3.9E-08 8.5E-13 81.2 5.3 52 23-76 2-58 (1714)
2 KOG0245|consensus 98.6 7.3E-08 1.6E-12 79.5 5.4 50 23-75 2-51 (1221)
3 KOG0243|consensus 98.6 9.3E-08 2E-12 78.8 6.0 57 20-76 44-100 (1041)
4 cd01371 KISc_KIF3 Kinesin moto 98.5 2.4E-07 5.2E-12 67.5 6.4 51 25-75 1-52 (333)
5 cd01370 KISc_KIP3_like Kinesin 98.4 7.9E-07 1.7E-11 65.1 5.9 48 26-75 1-58 (338)
6 cd01365 KISc_KIF1A_KIF1B Kines 98.3 1.4E-06 3E-11 64.0 6.3 49 25-75 1-52 (356)
7 cd01364 KISc_BimC_Eg5 Kinesin 98.3 2E-06 4.3E-11 63.0 6.0 51 25-75 2-52 (352)
8 cd01367 KISc_KIF2_like Kinesin 98.2 4.1E-06 9E-11 60.9 6.0 49 26-75 2-55 (322)
9 cd01368 KISc_KIF23_like Kinesi 98.2 4.8E-06 1E-10 61.2 6.2 50 25-75 1-59 (345)
10 cd01369 KISc_KHC_KIF5 Kinesin 98.1 8.8E-06 1.9E-10 58.9 5.9 46 25-75 2-47 (325)
11 cd01373 KISc_KLP2_like Kinesin 98.0 1.6E-05 3.6E-10 58.1 5.3 45 25-75 1-45 (337)
12 KOG4280|consensus 97.9 1.1E-05 2.3E-10 63.7 4.2 54 23-76 3-57 (574)
13 cd01372 KISc_KIF4 Kinesin moto 97.9 2.3E-05 4.9E-10 57.1 5.3 43 26-75 2-44 (341)
14 cd01374 KISc_CENP_E Kinesin mo 97.9 3.3E-05 7.1E-10 55.9 5.4 44 26-75 1-44 (321)
15 cd01376 KISc_KID_like Kinesin 97.9 4.5E-05 9.7E-10 55.4 5.9 48 26-76 1-52 (319)
16 smart00129 KISc Kinesin motor, 97.8 5.7E-05 1.2E-09 54.7 5.8 49 26-75 1-50 (335)
17 cd00106 KISc Kinesin motor dom 97.4 0.00043 9.3E-09 49.8 6.1 48 26-75 1-49 (328)
18 cd01366 KISc_C_terminal Kinesi 97.4 0.0005 1.1E-08 49.8 6.0 47 25-75 2-49 (329)
19 cd01375 KISc_KIF9_like Kinesin 97.0 0.0016 3.6E-08 47.5 5.5 45 26-75 1-52 (334)
20 KOG0239|consensus 96.6 0.0028 6.2E-08 50.9 4.2 55 21-76 310-365 (670)
21 PLN03188 kinesin-12 family pro 96.6 0.0049 1.1E-07 52.6 5.5 40 24-75 97-136 (1320)
22 KOG0240|consensus 96.5 0.0037 8.1E-08 49.7 4.0 49 23-75 5-53 (607)
23 KOG0246|consensus 96.5 0.0051 1.1E-07 49.2 4.6 42 23-65 206-247 (676)
24 KOG0242|consensus 96.2 0.0096 2.1E-07 47.9 5.2 52 24-75 5-57 (675)
25 PF00225 Kinesin: Kinesin moto 91.6 0.15 3.3E-06 36.7 2.4 44 32-75 1-45 (335)
26 KOG0247|consensus 87.2 1 2.2E-05 37.2 4.3 48 24-75 30-85 (809)
27 KOG0244|consensus 80.9 0.96 2.1E-05 38.0 1.6 30 33-62 1-30 (913)
28 cd01363 Motor_domain Myosin an 37.0 15 0.00033 24.4 0.6 7 29-35 1-7 (186)
29 COG5059 KIP1 Kinesin-like prot 35.6 24 0.00051 28.1 1.6 30 8-38 289-318 (568)
30 cd01178 IPT_NFAT IPT domain of 33.4 1.2E+02 0.0027 19.0 4.3 42 26-76 59-100 (101)
31 COG1915 Uncharacterized conser 27.9 79 0.0017 24.3 3.2 40 31-76 133-172 (415)
32 cd00602 IPT_TF IPT domain of e 22.6 1.7E+02 0.0038 18.1 3.6 43 25-76 57-100 (101)
No 1
>KOG0241|consensus
Probab=98.65 E-value=3.9e-08 Score=81.23 Aligned_cols=52 Identities=27% Similarity=0.314 Sum_probs=42.0
Q ss_pred CCCceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCC-----CCCCCeeeEeC
Q psy8843 23 QNESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKV-----KEKKIKDLNIL 76 (76)
Q Consensus 23 ~~~~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~-----~~~~~KtFtF~ 76 (76)
.+.+|+|+||+||||.||.....+|+|.|+. .+++|+.|.. ....+|+|+|.
T Consensus 2 s~~kVkVaVRVRP~nrREl~l~tk~vv~vd~--~q~vl~~~pp~~~~~~~k~pktFAFD 58 (1714)
T KOG0241|consen 2 SDAKVKVAVRVRPMNRRELELSTKCVVEVDK--NQTVLHPPPPNHKIGESKGPKTFAFD 58 (1714)
T ss_pred CCcceEEEEEecccchhhhcccccceEEecc--CceeecCCCccccccccCCCceeecc
Confidence 4678999999999999999999999999995 5566665521 22578999993
No 2
>KOG0245|consensus
Probab=98.59 E-value=7.3e-08 Score=79.52 Aligned_cols=50 Identities=34% Similarity=0.427 Sum_probs=39.9
Q ss_pred CCCceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCCCCCCCeeeEe
Q psy8843 23 QNESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEKKIKDLNI 75 (76)
Q Consensus 23 ~~~~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~~~~~~KtFtF 75 (76)
+..+|+|+||+||+|.+|..+.++|+|+|. ++++++..|+.+.+ ...|+|
T Consensus 2 ~~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~--gn~ttii~~~~~k~-~~~Ftf 51 (1221)
T KOG0245|consen 2 EGSSVKVAVRVRPFNAREKSRDAKCVVQMQ--GNTTTIINPKGSKD-APKFTF 51 (1221)
T ss_pred CCCceEEEEEeccchhhhhhcccceEEEec--CCceeeecCCCccc-CCceec
Confidence 467899999999999999999999999998 45666666654443 344887
No 3
>KOG0243|consensus
Probab=98.59 E-value=9.3e-08 Score=78.78 Aligned_cols=57 Identities=25% Similarity=0.306 Sum_probs=46.5
Q ss_pred ccCCCCceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCCCCCCCeeeEeC
Q psy8843 20 KKTQNESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEKKIKDLNIL 76 (76)
Q Consensus 20 ~~~~~~~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~~~~~~KtFtF~ 76 (76)
..+.+.||+|+|||||+|.+|....+..+|.++..+.+|.+...-.+....|+|+|.
T Consensus 44 ~~e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFD 100 (1041)
T KOG0243|consen 44 HKEKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFD 100 (1041)
T ss_pred CCCCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecc
Confidence 355668999999999999999999999999999777788888763333357999983
No 4
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=98.54 E-value=2.4e-07 Score=67.52 Aligned_cols=51 Identities=41% Similarity=0.665 Sum_probs=43.5
Q ss_pred CceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCC-CCCCCeeeEe
Q psy8843 25 ESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKV-KEKKIKDLNI 75 (76)
Q Consensus 25 ~~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~-~~~~~KtFtF 75 (76)
++|+|+|||||++..|...+...+|.++++..++.+..|.. ....+++|+|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~f 52 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTF 52 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeee
Confidence 58999999999999999999999999988888999998864 2345788988
No 5
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=98.39 E-value=7.9e-07 Score=65.08 Aligned_cols=48 Identities=29% Similarity=0.430 Sum_probs=36.5
Q ss_pred ceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCCC----------CCCCeeeEe
Q psy8843 26 SVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVK----------EKKIKDLNI 75 (76)
Q Consensus 26 ~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~~----------~~~~KtFtF 75 (76)
+|+|+|||||++.+|...+...+|.+.++ . +++.+|... ....++|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~-~-~v~~~~~~~~~~~~~~~~~~~~~~~f~F 58 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDD-R-MLVFDPKDEEDAFRNLRARRNKELKYSF 58 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCC-C-EEEEcCCcccccccchhcccCCceEEEe
Confidence 69999999999999999999999999753 3 444444321 234688988
No 6
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=98.34 E-value=1.4e-06 Score=64.02 Aligned_cols=49 Identities=39% Similarity=0.525 Sum_probs=40.1
Q ss_pred CceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCC---CCCCCeeeEe
Q psy8843 25 ESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKV---KEKKIKDLNI 75 (76)
Q Consensus 25 ~~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~---~~~~~KtFtF 75 (76)
.+|+|+||+||++..|...+...+|.+++ ..+++.+|.. .....++|+|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~--~~v~v~~~~~~~~~~~~~~~f~F 52 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPG--KVTTLKNPKAADATRKKPKSFSF 52 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECC--CEEEEEcCCcccccccCceEEEC
Confidence 47999999999999999999999999985 6788888753 1234688888
No 7
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=98.29 E-value=2e-06 Score=62.96 Aligned_cols=51 Identities=31% Similarity=0.405 Sum_probs=41.4
Q ss_pred CceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCCCCCCCeeeEe
Q psy8843 25 ESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEKKIKDLNI 75 (76)
Q Consensus 25 ~~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~~~~~~KtFtF 75 (76)
.+|+|+||+||++..|...++..++.+..++.++.+.++.......++|+|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~F 52 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTF 52 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEec
Confidence 489999999999999998888899999877778888775433335678888
No 8
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=98.20 E-value=4.1e-06 Score=60.87 Aligned_cols=49 Identities=31% Similarity=0.458 Sum_probs=38.5
Q ss_pred ceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCCC-----CCCCeeeEe
Q psy8843 26 SVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVK-----EKKIKDLNI 75 (76)
Q Consensus 26 ~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~~-----~~~~KtFtF 75 (76)
+|+|+|||||++..|...+...+|.++.+ .+++++.|... ....++|+|
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~f~F 55 (322)
T cd01367 2 KITVAVRKRPLNDKELSKGETDVVSCESN-PTVTVHEPKTKVDLTKYIEKHTFRF 55 (322)
T ss_pred CeEEEEEcCcCChhhhccCCceEEEECCC-CEEEEecCccccccccccCCceEec
Confidence 79999999999999998888889988764 57888876431 113578888
No 9
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=98.19 E-value=4.8e-06 Score=61.19 Aligned_cols=50 Identities=20% Similarity=0.410 Sum_probs=39.1
Q ss_pred CceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCC---------CCCCCeeeEe
Q psy8843 25 ESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKV---------KEKKIKDLNI 75 (76)
Q Consensus 25 ~~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~---------~~~~~KtFtF 75 (76)
..|+|+||+||++..|...+...+|.+.+ ..++.++.|.. .....++|.|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~f~F 59 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVIN-STTIQLHPPKGSAARKSERNGGQKETKFSF 59 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcC-CCEEEEeCCccccccccccccCCCceEeec
Confidence 36999999999999999888888888764 56788887743 1235678887
No 10
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=98.09 E-value=8.8e-06 Score=58.93 Aligned_cols=46 Identities=24% Similarity=0.373 Sum_probs=37.4
Q ss_pred CceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCCCCCCCeeeEe
Q psy8843 25 ESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEKKIKDLNI 75 (76)
Q Consensus 25 ~~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~~~~~~KtFtF 75 (76)
++|+|+||+||++..|...+...+|.+.++ .++.+.++. ..++|.|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~-~~v~~~~~~----~~~~f~F 47 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGE-DTVSIAGSD----DGKTFSF 47 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCC-CEEEecCCC----CceEEEc
Confidence 589999999999999988888889988754 677787753 3577877
No 11
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=97.96 E-value=1.6e-05 Score=58.14 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=32.3
Q ss_pred CceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCCCCCCCeeeEe
Q psy8843 25 ESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEKKIKDLNI 75 (76)
Q Consensus 25 ~~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~~~~~~KtFtF 75 (76)
.+|+|+|||||++..|...+...+|....+. .+.+... ..+.|.|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~-~~~~~~~-----~~~~f~F 45 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSD-TLVWHSH-----PPRMFTF 45 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCC-cEEeeCC-----CCcEEeC
Confidence 3799999999999999887777777776533 3433321 1577877
No 12
>KOG4280|consensus
Probab=97.94 E-value=1.1e-05 Score=63.65 Aligned_cols=54 Identities=30% Similarity=0.420 Sum_probs=46.8
Q ss_pred CCCceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCC-CCCCCeeeEeC
Q psy8843 23 QNESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKV-KEKKIKDLNIL 76 (76)
Q Consensus 23 ~~~~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~-~~~~~KtFtF~ 76 (76)
...+|+|+|||||++..|...+...++.++...+.+.+.+|.. ..+.+|+|+|.
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD 57 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFD 57 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceee
Confidence 4678999999999999999999999999998888899988764 44578999993
No 13
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=97.92 E-value=2.3e-05 Score=57.06 Aligned_cols=43 Identities=28% Similarity=0.456 Sum_probs=35.3
Q ss_pred ceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCCCCCCCeeeEe
Q psy8843 26 SVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEKKIKDLNI 75 (76)
Q Consensus 26 ~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~~~~~~KtFtF 75 (76)
.|+|+||+||++..|...+...++.+.++..++++.. .+.|.|
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~-------~~~f~F 44 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT-------DKSFTF 44 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC-------CcEEec
Confidence 6999999999999999998888998887666676654 466766
No 14
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=97.86 E-value=3.3e-05 Score=55.94 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=33.6
Q ss_pred ceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCCCCCCCeeeEe
Q psy8843 26 SVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEKKIKDLNI 75 (76)
Q Consensus 26 ~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~~~~~~KtFtF 75 (76)
+|+|+||+||++..|.. +..+++.++.+ .++.+.++. ..+.|.|
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~-~~v~~~~~~----~~~~f~f 44 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDND-NTISLEEST----PGQSFTF 44 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECCC-CEEEEcCCC----CCeEEec
Confidence 69999999999999984 56788888764 566666652 3577877
No 15
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=97.85 E-value=4.5e-05 Score=55.36 Aligned_cols=48 Identities=29% Similarity=0.407 Sum_probs=33.0
Q ss_pred ceEEEEeeCCCCchhhcCCCeeEEEEe-CCC---CeEEEeCCCCCCCCCeeeEeC
Q psy8843 26 SVQVVVRCRPMNSSEISGGYDKVVDMW-PNR---GVIEISNPKVKEKKIKDLNIL 76 (76)
Q Consensus 26 ~VrV~VR~RPln~rE~~~g~~~vV~~~-~~~---~~v~v~~p~~~~~~~KtFtF~ 76 (76)
+|+|+|||||++..|.. ...+|.+. .+. .++.+.+|... ..+++|.|.
T Consensus 1 ~i~V~vRvRP~~~~e~~--~~~~v~~~~~~~~~~~~v~~~~~~~~-~~~~~f~FD 52 (319)
T cd01376 1 NVRVVVRVRPFLDCEED--SSSCVRGIDSDQGQAKSVEIENPRNR-GETKKYQFD 52 (319)
T ss_pred CcEEEEEeCcCCccccC--CCceEEEeCCCCCcceEEEEeCCCCC-CCccEEecC
Confidence 68999999999999943 34455543 322 47888887542 347889883
No 16
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=97.81 E-value=5.7e-05 Score=54.70 Aligned_cols=49 Identities=31% Similarity=0.445 Sum_probs=38.8
Q ss_pred ceEEEEeeCCCCchhhcCCCeeEEEEeCC-CCeEEEeCCCCCCCCCeeeEe
Q psy8843 26 SVQVVVRCRPMNSSEISGGYDKVVDMWPN-RGVIEISNPKVKEKKIKDLNI 75 (76)
Q Consensus 26 ~VrV~VR~RPln~rE~~~g~~~vV~~~~~-~~~v~v~~p~~~~~~~KtFtF 75 (76)
+|+|+||+||++..|...+...++.+..+ ..++.+.++.. ....++|.|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~f~f 50 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKN-RKEEKKFTF 50 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCC-CCCCeEEec
Confidence 58999999999999999989999998643 44777777643 335688887
No 17
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=97.45 E-value=0.00043 Score=49.82 Aligned_cols=48 Identities=27% Similarity=0.462 Sum_probs=35.6
Q ss_pred ceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCC-CCCCCeeeEe
Q psy8843 26 SVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKV-KEKKIKDLNI 75 (76)
Q Consensus 26 ~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~-~~~~~KtFtF 75 (76)
+|+|+||+||++..| ..+...+|.++++ .++.+.+|.. .....+.|.|
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~f~f 49 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDN-KTVTLTPPKDGRKAGPKSFTF 49 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCC-CEEEEecCccccCcCceEEEC
Confidence 589999999999888 3455678888753 6788888753 2234678887
No 18
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=97.40 E-value=0.0005 Score=49.81 Aligned_cols=47 Identities=30% Similarity=0.482 Sum_probs=32.9
Q ss_pred CceEEEEeeCCCCchhhcCCCeeEEEEeCCC-CeEEEeCCCCCCCCCeeeEe
Q psy8843 25 ESVQVVVRCRPMNSSEISGGYDKVVDMWPNR-GVIEISNPKVKEKKIKDLNI 75 (76)
Q Consensus 25 ~~VrV~VR~RPln~rE~~~g~~~vV~~~~~~-~~v~v~~p~~~~~~~KtFtF 75 (76)
++|+|+||+||++..|.. ....++.++... .++.+.++ ....+.|.|
T Consensus 2 ~~i~V~vRirP~~~~e~~-~~~~~~~~~~~~~~~i~~~~~---~~~~~~f~f 49 (329)
T cd01366 2 GNIRVFCRVRPLLPSEST-EYSSVISFPDEDGGTIELSKG---TGKKKSFSF 49 (329)
T ss_pred CCEEEEEEcCcCCccccC-CCccEEEEcCCCceEEEEeCC---CCCceEEec
Confidence 689999999999999873 344567776543 56666654 124678877
No 19
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=97.05 E-value=0.0016 Score=47.55 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=31.5
Q ss_pred ceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCCC-------CCCCeeeEe
Q psy8843 26 SVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVK-------EKKIKDLNI 75 (76)
Q Consensus 26 ~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~~-------~~~~KtFtF 75 (76)
.|+|+||+||++..|. ..+.+..++.++.+..|+.. ....++|+|
T Consensus 1 ~i~V~vRvRP~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~F 52 (334)
T cd01375 1 TIQVFVRVRPTPTKQG-----SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKF 52 (334)
T ss_pred CeEEEEECCCCCCCCC-----ccEEEcCCCCEEEEecccccccccccCCcCceEEEc
Confidence 3899999999997442 23455666788888887642 234567887
No 20
>KOG0239|consensus
Probab=96.61 E-value=0.0028 Score=50.92 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=37.4
Q ss_pred cCCCCceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCCCC-CCCeeeEeC
Q psy8843 21 KTQNESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKE-KKIKDLNIL 76 (76)
Q Consensus 21 ~~~~~~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~~~-~~~KtFtF~ 76 (76)
.+-.+||||.|||||+...|.......++..+.. ..+.+..|.... ..++.|.|.
T Consensus 310 ~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~fd 365 (670)
T KOG0239|consen 310 LELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQ-GEVQVDSPDKGDKLEPQSFKFD 365 (670)
T ss_pred HHhhcCceEEEEecCCCccccccccccccccCCc-ceeEeecCCCCCCCccccceee
Confidence 4456899999999999999987654555555543 567787775432 223457773
No 21
>PLN03188 kinesin-12 family protein; Provisional
Probab=96.58 E-value=0.0049 Score=52.59 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=27.2
Q ss_pred CCceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCCCCCCCeeeEe
Q psy8843 24 NESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEKKIKDLNI 75 (76)
Q Consensus 24 ~~~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~~~~~~KtFtF 75 (76)
..+|+|+|||||++..| .|..+++.+. +..+.+. .++|+|
T Consensus 97 ds~VkV~VRVRPl~~~E--~g~~iV~~~s--~dsl~I~--------~qtFtF 136 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGE--EGEMIVQKMS--NDSLTIN--------GQTFTF 136 (1320)
T ss_pred CCCeEEEEEcCCCCCcc--CCCeeEEEcC--CCeEEEe--------CcEEeC
Confidence 46899999999999886 3555555554 3445543 256777
No 22
>KOG0240|consensus
Probab=96.47 E-value=0.0037 Score=49.65 Aligned_cols=49 Identities=24% Similarity=0.268 Sum_probs=34.4
Q ss_pred CCCceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCCCCCCCeeeEe
Q psy8843 23 QNESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEKKIKDLNI 75 (76)
Q Consensus 23 ~~~~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~~~~~~KtFtF 75 (76)
...+|+|+||+||+|..|...|+..++-.......+.+...+ . .++|.|
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~--~--~~~y~F 53 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTK--E--TKTYVF 53 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEeccc--c--ccccee
Confidence 567899999999999999999998887766432334343321 1 266665
No 23
>KOG0246|consensus
Probab=96.45 E-value=0.0051 Score=49.17 Aligned_cols=42 Identities=26% Similarity=0.460 Sum_probs=35.2
Q ss_pred CCCceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCC
Q psy8843 23 QNESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKV 65 (76)
Q Consensus 23 ~~~~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~ 65 (76)
....|.||||-||||.+|......-+|.+.. ...++|+.|..
T Consensus 206 ~ehrI~VCVRKRPLnkkE~~~keiDvisvps-~~~l~vHEpk~ 247 (676)
T KOG0246|consen 206 NEHRICVCVRKRPLNKKELTKKEIDVISVPS-KNVLVVHEPKL 247 (676)
T ss_pred ccceEEEEeecCCCCchhccccccceEeccc-cceEEeecccc
Confidence 3456999999999999999998888888854 46788999875
No 24
>KOG0242|consensus
Probab=96.24 E-value=0.0096 Score=47.94 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=35.0
Q ss_pred CCceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCC-CCCCCeeeEe
Q psy8843 24 NESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKV-KEKKIKDLNI 75 (76)
Q Consensus 24 ~~~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~-~~~~~KtFtF 75 (76)
...|.|+||+||++.+|...+..+.|.+..+...+....+.. ....+.+|.|
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~F 57 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEF 57 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceee
Confidence 468999999999999998888888888875444333322221 1112567776
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=91.61 E-value=0.15 Score=36.72 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=26.9
Q ss_pred eeCCCCchhhcCCCeeEEEEeCCCCeE-EEeCCCCCCCCCeeeEe
Q psy8843 32 RCRPMNSSEISGGYDKVVDMWPNRGVI-EISNPKVKEKKIKDLNI 75 (76)
Q Consensus 32 R~RPln~rE~~~g~~~vV~~~~~~~~v-~v~~p~~~~~~~KtFtF 75 (76)
||||++..|...+...++.+....... ............++|.|
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~F 45 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRF 45 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEc
Confidence 899999999999999888875321111 12221122334678877
No 26
>KOG0247|consensus
Probab=87.23 E-value=1 Score=37.23 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=31.0
Q ss_pred CCceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCC--------CCCCCeeeEe
Q psy8843 24 NESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKV--------KEKKIKDLNI 75 (76)
Q Consensus 24 ~~~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~--------~~~~~KtFtF 75 (76)
...+.|++|+||+.. ..+..+|+.+..+ .++.+..|.. ...-.+.|.|
T Consensus 30 ~d~v~v~~rvrP~~~---~~~~~g~l~v~n~-~tivL~~P~d~~~~~~~n~~q~e~~fsF 85 (809)
T KOG0247|consen 30 KDPVLVVCRVRPLSD---ASEDEGCLRVINE-ETIVLETPEDSFARRSVNGGQMEKKFSF 85 (809)
T ss_pred hcchheeEeecCCCC---CccccceEEEecc-ceeEeeCcHHHHhhhccCccceeeEeee
Confidence 467999999999986 3445566666543 4566665531 2234567877
No 27
>KOG0244|consensus
Probab=80.93 E-value=0.96 Score=38.01 Aligned_cols=30 Identities=20% Similarity=0.414 Sum_probs=25.9
Q ss_pred eCCCCchhhcCCCeeEEEEeCCCCeEEEeC
Q psy8843 33 CRPMNSSEISGGYDKVVDMWPNRGVIEISN 62 (76)
Q Consensus 33 ~RPln~rE~~~g~~~vV~~~~~~~~v~v~~ 62 (76)
||||..+|..+|+..|+.+.+...++.+..
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~ 30 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGK 30 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeecC
Confidence 799999999999999999877777777765
No 28
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=36.97 E-value=15 Score=24.39 Aligned_cols=7 Identities=71% Similarity=1.132 Sum_probs=5.8
Q ss_pred EEEeeCC
Q psy8843 29 VVVRCRP 35 (76)
Q Consensus 29 V~VR~RP 35 (76)
|+||+||
T Consensus 1 v~vr~rP 7 (186)
T cd01363 1 VCVRVRP 7 (186)
T ss_pred CeEEecc
Confidence 6888888
No 29
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=35.56 E-value=24 Score=28.09 Aligned_cols=30 Identities=13% Similarity=0.188 Sum_probs=25.2
Q ss_pred hccccCCchhhhccCCCCceEEEEeeCCCCc
Q psy8843 8 EDEQLIRPEYKKKKTQNESVQVVVRCRPMNS 38 (76)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~VrV~VR~RPln~ 38 (76)
-|+.|+|-.+....+.. +++|+++|+|.+.
T Consensus 289 ReskLTRlLq~sLgG~~-~~~~i~~Isp~~~ 318 (568)
T COG5059 289 RESKLTRLLQDSLGGNC-NTRVICTISPSSN 318 (568)
T ss_pred hhhHHHHHHHHhcCCCc-cEEEEEEEcCCCC
Confidence 36778888887778877 9999999999883
No 30
>cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
Probab=33.42 E-value=1.2e+02 Score=19.04 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=26.2
Q ss_pred ceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCCCCCCCeeeEeC
Q psy8843 26 SVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEKKIKDLNIL 76 (76)
Q Consensus 26 ~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~~~~~~KtFtF~ 76 (76)
..-.+++..|+...++..-.+.- +.|..++...+.++.|+|+
T Consensus 59 Q~aIvf~tPpY~~~~I~~pV~V~---------~~l~~~~~~~S~~~~FtY~ 100 (101)
T cd01178 59 QNHLVVEVPPYHNKHVAAPVQVQ---------FYVVNGKRKRSQPQTFTYT 100 (101)
T ss_pred eeeEEEecCCCCCCCcCCceEEE---------EEEEcCCCCcCCCCCcEec
Confidence 45678888999877765543322 2233343345678999986
No 31
>COG1915 Uncharacterized conserved protein [Function unknown]
Probab=27.94 E-value=79 Score=24.31 Aligned_cols=40 Identities=25% Similarity=0.474 Sum_probs=27.4
Q ss_pred EeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCCCCCCCCCeeeEeC
Q psy8843 31 VRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEKKIKDLNIL 76 (76)
Q Consensus 31 VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p~~~~~~~KtFtF~ 76 (76)
.||.|+ +|...|...+|-.. -+.+..|..+.++...|.|.
T Consensus 133 A~ck~i--re~k~Gd~VvVg~~----Girvippe~pre~~~~F~FM 172 (415)
T COG1915 133 ARCKPI--RELKKGDLVVVGVE----GIRVIPPERPREKTGEFEFM 172 (415)
T ss_pred ceeeEh--hHhccCCEEEEccc----eeEecCCCCCCcCCceEEee
Confidence 467777 68888888776543 25566666566667888884
No 32
>cd00602 IPT_TF IPT domain of eukaryotic transcription factors NF-kappaB/Rel, nuclear factor of activated Tcells (NFAT), and recombination signal J-kappa binding protein (RBP-Jkappa). The IPT domains in these proteins are involved in DNA binding. Most NF-kappaB/Rel proteins form homo- and heterodimers, while NFAT proteins are largely monomeric (with TonEBP being an exception). While the majority of sequence-specific DNA binding elements are found in the N-terminal domain, several are found in the IPT domain in loops adjacent to, and including, the linker region.
Probab=22.61 E-value=1.7e+02 Score=18.10 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=25.0
Q ss_pred CceEEEEeeCCCCchhhcCCCeeEEEEeCCCCeEEEeCC-CCCCCCCeeeEeC
Q psy8843 25 ESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNP-KVKEKKIKDLNIL 76 (76)
Q Consensus 25 ~~VrV~VR~RPln~rE~~~g~~~vV~~~~~~~~v~v~~p-~~~~~~~KtFtF~ 76 (76)
...-+++++.|+-...+.. . |++ .+.|..+ ....+.+..|+|+
T Consensus 57 ~q~aiv~~tP~y~~~~i~~--p--V~V-----~i~L~r~~~~~~S~~~~FtY~ 100 (101)
T cd00602 57 RQVAIVFKTPPYHNKWITR--P--VQV-----PIQLVRPDDRKRSEPLTFTYT 100 (101)
T ss_pred eEeEEEecCCCcCCCCccc--c--EEE-----EEEEEeCCCCeecCCcCeEEc
Confidence 4466788888887666522 1 222 2444444 2334578999985
Done!