RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8843
         (76 letters)



>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
          cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
          c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
          2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
          2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
          1q0b_A* ...
          Length = 359

 Score = 63.0 bits (154), Expect = 8e-14
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 18 KKKKTQNESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEK 68
          KKK+ + +++QVVVRCRP N +E       +V+  P R  + +    + +K
Sbjct: 1  KKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADK 51


>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
          domain, ADP, SGC, ATP-binding, coiled coil,
          microtubule, motor protein; HET: ADP; 1.80A {Homo
          sapiens} PDB: 3b6v_A*
          Length = 372

 Score = 62.6 bits (153), Expect = 1e-13
 Identities = 24/54 (44%), Positives = 32/54 (59%)

Query: 16 EYKKKKTQNESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEKK 69
          E    +  +ESV+VVVRCRPMN  E +  YDKVVD+    G + + NPK    +
Sbjct: 12 ENLYFQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHE 65


>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
          HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
          Length = 344

 Score = 61.0 bits (149), Expect = 4e-13
 Identities = 9/46 (19%), Positives = 20/46 (43%)

Query: 20 KKTQNESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKV 65
             +   V+V +R RP+   E+  G+   + + P  G + +   + 
Sbjct: 6  PGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRH 51


>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
          GTP-binding, motor protein, cell division, cell cycle,
          microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
          {Drosophila melanogaster}
          Length = 373

 Score = 59.9 bits (146), Expect = 1e-12
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 18 KKKKTQNESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEKK 69
          + +K  N+++QV VR RP+NS E      +VVD+   R V+       K  K
Sbjct: 16 QPQKKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTK 67


>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
          ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
          Length = 350

 Score = 58.0 bits (141), Expect = 5e-12
 Identities = 10/49 (20%), Positives = 26/49 (53%)

Query: 24 NESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEKKIKD 72
          +++++V+VRCRP+N+ E       ++ M      + +  P+ ++   + 
Sbjct: 3  SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQA 51


>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
          ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
          crassa}
          Length = 443

 Score = 57.7 bits (140), Expect = 7e-12
 Identities = 12/47 (25%), Positives = 20/47 (42%)

Query: 18 KKKKTQNESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPK 64
             K    +V+VVVR R     E+    + +V+M P      +  P+
Sbjct: 31 FVSKDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQ 77


>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
          {Drosophila melanogaster} PDB: 2y5w_A*
          Length = 365

 Score = 56.9 bits (138), Expect = 1e-11
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 18 KKKKTQNESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPK 64
          +++    +S++VV R RP+N SE   G   VV    N     IS   
Sbjct: 4  EREIPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAG 50


>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
          structural genomics consortium, SGC, structural
          protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
          Length = 387

 Score = 56.1 bits (136), Expect = 3e-11
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 14 RPEYKKKKTQNESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVK 66
           P       +   + V VR RP+N  E++     V+ + P++ ++ +  PK+K
Sbjct: 40 HPLTMTDPIEEHRICVCVRKRPLNKQELAKKEIDVISI-PSKCLLLVHEPKLK 91


>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
          complex, stranded beta-sheet core with solvent exposed
          alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
          Length = 349

 Score = 56.0 bits (136), Expect = 3e-11
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 23 QNESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPK 64
          +  +V V VR RP+NS E S G    V    +  VI   +  
Sbjct: 2  EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGS 43


>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
          and beta protein, enzyme, ATPase, P-loop, motor
          protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus
          musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A*
          1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A*
          2hxf_C* 1ia0_K* 2hxh_C*
          Length = 366

 Score = 55.6 bits (135), Expect = 4e-11
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 24 NESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEKKIK 71
            SV+V VR RP NS E+S     ++ M  +     I NPK  ++  K
Sbjct: 3  GASVKVAVRVRPFNSREMSRDSKCIIQMSGST--TTIVNPKQPKETPK 48


>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
          structural genomics consortium, SGC, ATP-binding,
          microtubule, motor protein; HET: ADP; 2.10A {Homo
          sapiens}
          Length = 354

 Score = 55.3 bits (134), Expect = 5e-11
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 26 SVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEKKIKD 72
           V+V VR RPMN  E       VVD+  N+ ++   N  + +   + 
Sbjct: 2  KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARG 48


>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
           HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
           1v8j_A* 2gry_A*
          Length = 410

 Score = 54.6 bits (132), Expect = 9e-11
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 1   MIPNKKEEDEQLIRPEYKKKKTQNESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEI 60
           MI  K+        P       +   + V VR RP+N  E++     V+ + P++ ++ +
Sbjct: 49  MI--KEFRVTMECSPLTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISV-PSKCLLLV 105

Query: 61  SNPKVKEKKIKDLN 74
             PK+K    K L 
Sbjct: 106 HEPKLKVDLTKYLE 119


>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP;
          2.3A {Neurospora crassa} SCOP: c.37.1.9
          Length = 355

 Score = 54.1 bits (131), Expect = 1e-10
 Identities = 12/43 (27%), Positives = 15/43 (34%)

Query: 24 NESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVK 66
            S++VV R RP N  EI  G   +V           S     
Sbjct: 5  ANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQG 47


>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
          microtubule binding, ATP- cell projection,
          cytoskeleton, glycoprotein, microtubule; HET: ADP;
          2.20A {Homo sapiens}
          Length = 355

 Score = 54.2 bits (131), Expect = 1e-10
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 18 KKKKTQNESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVI 58
            ++     ++VVVR RP N+ E + G+ KVV +     ++
Sbjct: 3  VTEEDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILV 43


>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
          genomics consortium domain, ADP, SGC, ATP-binding,
          DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
          {Homo sapiens}
          Length = 388

 Score = 52.6 bits (127), Expect = 4e-10
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 16 EYKKKKTQNESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEK 68
          E    +     V+V VR RP             V    +   +EI+N +  ++
Sbjct: 12 ENLYFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSC-SLEIANWRNHQE 63


>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
          1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K*
          1mkj_A* 2kin_A* 3kin_A*
          Length = 325

 Score = 52.6 bits (127), Expect = 4e-10
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 21 KTQNESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNP 63
               +++V+ R RP+N SE++ G   +        V+  S P
Sbjct: 3  DLAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKP 45


>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free,
          transport protein; 1.60A {Plasmodium falciparum} SCOP:
          c.37.1.9
          Length = 360

 Score = 49.2 bits (118), Expect = 7e-09
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 27 VQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEKKIKDLN 74
          ++VVVR RP++  E       ++ +  N   + I  P+ K    K + 
Sbjct: 2  IKVVVRKRPLSELEKKKKDSDIITV-KNNCTLYIDEPRYKVDMTKYIE 48


>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
          ADP, nucleotide-binding protein, ATP-binding, coiled
          coil, motor protein; HET: ADP; 1.90A {Drosophila
          melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
          Length = 344

 Score = 48.0 bits (115), Expect = 2e-08
 Identities = 7/46 (15%), Positives = 14/46 (30%)

Query: 20 KKTQNESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKV 65
          +  +  +V++ VR  P            V     + G   I +   
Sbjct: 17 EGAKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIVDQNE 62


>3u06_A Protein claret segregational; motor domain, stalk rotation, power
           stroke, kinesin-14, MICR binding, NCD, transport,
           molecular motor; HET: ADP GOL; 2.35A {Drosophila
           melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
          Length = 412

 Score = 45.3 bits (108), Expect = 2e-07
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 10  EQLIRPEYKKKKTQNE------SVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNP 63
           EQL +   ++K+  N       +++V  R RP   SE +           +   ++  + 
Sbjct: 38  EQLFQSNMERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDA 97

Query: 64  KVKEKKIK 71
           + K K  +
Sbjct: 98  QAKSKMGQ 105


>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
          conformation, nucleotide, ATP-binding, microtubule,
          motor protein; HET: ADP; 2.20A {Solanum tuberosum}
          SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
          Length = 369

 Score = 43.8 bits (104), Expect = 6e-07
 Identities = 7/38 (18%), Positives = 12/38 (31%)

Query: 25 ESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISN 62
            ++V  R RP+   EI       +       V  +  
Sbjct: 5  GKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWK 42


>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
          nucleosi triphosphate hydrolases, microtubule motor
          protein; HET: ADP; 2.35A {Ashbya gossypii}
          Length = 349

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 6/45 (13%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 26 SVQVVVRCRPMNSSEISGGYDKVVDMWPN-RGVIEISNPKVKEKK 69
          +++V  R RP   +E       +++ +   +G   ++  + + + 
Sbjct: 6  NIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRI 50


>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural
          genomics, structural genomics consortium, SGC,
          contractIle protein; HET: ADP; 2.00A {Homo sapiens}
          PDB: 3nwn_A*
          Length = 358

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 7/55 (12%), Positives = 19/55 (34%), Gaps = 5/55 (9%)

Query: 18 KKKKTQNESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEKKIKD 72
           +     + V   VR +P +          ++    ++  I+I   K   + + +
Sbjct: 16 PRGSGTRKKVHAFVRVKPTDDFAHE-----MIRYGDDKRSIDIHLKKDIRRGVVN 65


>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
          genomics, structur Al genomics consortium, SGC; HET:
          ADP; 1.85A {Homo sapiens}
          Length = 330

 Score = 41.4 bits (98), Expect = 4e-06
 Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 1/45 (2%)

Query: 26 SVQVVVRCRPMNSSEI-SGGYDKVVDMWPNRGVIEISNPKVKEKK 69
          +++V+ R RP+   +         V    +   I     K K   
Sbjct: 5  NIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVS 49


>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
          domain, ADP, binding, cell cycle, cell division,
          endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
          Length = 376

 Score = 41.5 bits (98), Expect = 4e-06
 Identities = 6/38 (15%), Positives = 14/38 (36%)

Query: 26 SVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNP 63
          +++V  R RP+   E +     ++      G  +    
Sbjct: 23 NIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTR 60


>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
           homology domain, karyog mitosis, microtubules; HET: ADP
           EBC; 2.30A {Saccharomyces cerevisiae}
          Length = 403

 Score = 41.1 bits (97), Expect = 5e-06
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 6   KEEDEQLIRPEYKKKKTQNE------SVQVVVRCRPMNSSEISGG--YDKVVDMWPNRGV 57
           KE +E LI+ E  ++   NE      +++V +R RP   +  +       V +   N GV
Sbjct: 34  KELNEILIKEETVRRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGV 93

Query: 58  IEISNPKVKEKK 69
             +   K++   
Sbjct: 94  QSMEVTKIQNTA 105


>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor
          protein, microtubinding proteinbule, contractIle
          protein; HET: ADP; 1.30A {Saccharomyces cerevisiae}
          SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
          Length = 347

 Score = 39.9 bits (94), Expect = 1e-05
 Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 26 SVQVVVRCRPMNSSEISGG--YDKVVDMWPNRGVIEISNPKVKEKK 69
          +++V  R RP   +  +       V +   N GV  +   K++   
Sbjct: 4  NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTA 49


>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex,
           ATP-binding, cytoplasm, nucleotide-binding, nucleus,
           phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo
           sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X*
           3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A*
           3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
          Length = 336

 Score = 23.8 bits (52), Expect = 5.9
 Identities = 9/15 (60%), Positives = 10/15 (66%), Gaps = 1/15 (6%)

Query: 44  GYDKVVDMWPNRGVI 58
            YDK  DMW + GVI
Sbjct: 205 KYDKSCDMW-SLGVI 218


>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2,
           autoinhibitory, ATP-binding, nucleotide phosphorylation,
           serine/threonine-protein kinase; 2.00A {Mus musculus}
           PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
          Length = 342

 Score = 23.8 bits (52), Expect = 6.1
 Identities = 7/15 (46%), Positives = 10/15 (66%), Gaps = 1/15 (6%)

Query: 44  GYDKVVDMWPNRGVI 58
           GYD   D+W + GV+
Sbjct: 196 GYDAACDIW-SLGVL 209


>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK,
           ATP-binding, metal-binding, NUCL binding,
           serine/threonine-protein kinase, transferase; 2.00A
           {Homo sapiens} PDB: 3kn5_A
          Length = 325

 Score = 23.8 bits (52), Expect = 6.2
 Identities = 8/15 (53%), Positives = 11/15 (73%), Gaps = 1/15 (6%)

Query: 44  GYDKVVDMWPNRGVI 58
           GYD+  D+W + GVI
Sbjct: 185 GYDESCDLW-SLGVI 198


>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold,
           ATP-binding, UBL conjugation pathway, transfer
           structural genomics consortium, SGC; HET: ATP; 2.00A
           {Homo sapiens} PDB: 3guc_A*
          Length = 292

 Score = 23.8 bits (52), Expect = 7.0
 Identities = 6/34 (17%), Positives = 10/34 (29%)

Query: 17  YKKKKTQNESVQVVVRCRPMNSSEISGGYDKVVD 50
           +    T  E+ Q  +        E     D V+ 
Sbjct: 110 HNYNITTVENFQHFMDRISNGGLEEGKPVDLVLS 143


>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif,
           transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A*
           2hw6_A
          Length = 316

 Score = 23.8 bits (52), Expect = 7.0
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)

Query: 39  SEISGGYDKVVDMWPNRGVI 58
           SE +  YDK  D+W + GVI
Sbjct: 197 SEEASIYDKRCDLW-SLGVI 215


>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4
           calmodulin like EF...; calcium dependent protein kinase;
           HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II}
           PDB: 2qg5_A*
          Length = 277

 Score = 23.7 bits (52), Expect = 7.2
 Identities = 6/18 (33%), Positives = 9/18 (50%), Gaps = 1/18 (5%)

Query: 41  ISGGYDKVVDMWPNRGVI 58
           + G Y    D W + GV+
Sbjct: 180 LEGLYGPECDEW-SAGVM 196


>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
           staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
           SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
          Length = 400

 Score = 23.9 bits (52), Expect = 7.4
 Identities = 9/16 (56%), Positives = 10/16 (62%), Gaps = 1/16 (6%)

Query: 43  GGYDKVVDMWPNRGVI 58
             YDK  DMW + GVI
Sbjct: 238 EKYDKSCDMW-SLGVI 252


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.310    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0757    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,115,889
Number of extensions: 52334
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 56
Length of query: 76
Length of database: 6,701,793
Length adjustment: 45
Effective length of query: 31
Effective length of database: 5,445,348
Effective search space: 168805788
Effective search space used: 168805788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.4 bits)