RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8843
         (76 letters)



>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c
          [TaxId: 10090]}
          Length = 362

 Score = 49.9 bits (118), Expect = 1e-09
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 1  MIPNKKEEDEQLIRPEYKKKKTQNESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEI 60
          MI   +   E    P       +   + V VR RP+N  E++     V+ + P++ ++ +
Sbjct: 8  MIKEFRVTMEC--SPLTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISV-PSKCLLLV 64

Query: 61 SNPKVK 66
            PK+K
Sbjct: 65 HEPKLK 70


>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
          [TaxId: 10090]}
          Length = 349

 Score = 45.4 bits (106), Expect = 7e-08
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 26 SVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEKKIK 71
          SV+V VR RP NS E+S     ++ M  +     I NPK  ++  K
Sbjct: 2  SVKVAVRVRPFNSREMSRDSKCIIQMSGST--TTIVNPKQPKETPK 45


>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens),
          mitotic kinesin eg5 [TaxId: 9606]}
          Length = 345

 Score = 44.2 bits (103), Expect = 1e-07
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 27 VQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEK 68
          +QVVVRCRP N +E       +V+  P R  + +    + +K
Sbjct: 2  IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADK 43


>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
          falciparum) [TaxId: 5833]}
          Length = 330

 Score = 43.1 bits (100), Expect = 4e-07
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 27 VQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEKKIK 71
          ++VVVR RP++  E       ++ +  N   + I  P+ K    K
Sbjct: 2  IKVVVRKRPLSELEKKKKDSDIITV-KNNCTLYIDEPRYKVDMTK 45


>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
          Length = 354

 Score = 41.8 bits (97), Expect = 1e-06
 Identities = 12/46 (26%), Positives = 16/46 (34%)

Query: 22 TQNESVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKE 67
          +   S++VV R RP N  EI  G   +V           S      
Sbjct: 2  SSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGS 47


>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret
          disjunctional) {Fruit fly (Drosophila melanogaster)
          [TaxId: 7227]}
          Length = 368

 Score = 40.3 bits (93), Expect = 3e-06
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 6  KEEDEQLIRPEYKKKKTQNE------SVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIE 59
          +   EQL +   ++K+  N       +++V  R RP   SE +           +   ++
Sbjct: 20 ETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQ 79

Query: 60 ISNPKVKEK 68
            + + K K
Sbjct: 80 SIDAQAKSK 88


>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 323

 Score = 39.9 bits (92), Expect = 5e-06
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 26 SVQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNP 63
          +++V+ R RP+N SE++ G   +        V+  S P
Sbjct: 6  NIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKP 43


>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret
          disjunctional) {Baker's yeast (Saccharomyces
          cerevisiae), Kar [TaxId: 4932]}
          Length = 342

 Score = 35.4 bits (80), Expect = 2e-04
 Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 26 SVQVVVRCRPMNSSEISGGYD--KVVDMWPNRGVIEISNPKVKEKK 69
          +++V  R RP   +  +       V +   N GV  +   K++   
Sbjct: 2  NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTA 47


>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
          (Solanum tuberosum) [TaxId: 4113]}
          Length = 364

 Score = 35.0 bits (79), Expect = 3e-04
 Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 27 VQVVVRCRPMNSSEISGGYDKVVDMWPNRGVIEISNPKVKEKK 69
          ++V  R RP+   EI       +    +   +E      K K+
Sbjct: 2  IRVYCRLRPLCEKEIIAKERNAIRS-VDEFTVEHLWKDDKAKQ 43


>d3pvia_ c.52.1.6 (A:) Restriction endonuclease PvuII {Proteus
           vulgaris [TaxId: 585]}
          Length = 156

 Score = 23.4 bits (50), Expect = 3.4
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 36  MNSSEISGGYDKVVDMWPNRGVIEISNPKVKEKKIKD 72
           +   ++   YDK    W + G  +I+NPK+  K + +
Sbjct: 114 LEPKDLEFYYDKWERKWYSDGHKDINNPKIPVKYVME 150


>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1
          (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 293

 Score = 23.7 bits (49), Expect = 3.6
 Identities = 7/39 (17%), Positives = 18/39 (46%)

Query: 14 RPEYKKKKTQNESVQVVVRCRPMNSSEISGGYDKVVDMW 52
          R   ++   ++E+ + V   +  +   +SG  D  + +W
Sbjct: 2  RHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIW 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0584    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 285,353
Number of extensions: 10857
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 14
Length of query: 76
Length of database: 2,407,596
Length adjustment: 43
Effective length of query: 33
Effective length of database: 1,817,206
Effective search space: 59967798
Effective search space used: 59967798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.2 bits)