BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8844
(353 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 309
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 118/259 (45%), Gaps = 37/259 (14%)
Query: 22 GASVFDALESQTENRRWTTLSDI-EKMIMNKYNISPDDFKLL-----ETLILKSEPHKAG 75
GA VF ALE E + L ++ EK + +S + LL + L ++P
Sbjct: 46 GALVFRALEQPHEQQAQRELGEVREKFLRAHPCVSDQELGLLIKEVADALGGGADPETQS 105
Query: 76 Q------QWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIG 129
W +F+++ T++TTIGYG+ T G+LF +FYA+VGIPL ++ +G
Sbjct: 106 TSQSSHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVG 165
Query: 130 ERLNKLSSVVIRKAKRLSGCTEIEA------TEINLICVVTTLSSLTIAV------GAAA 177
+RL + G IEA L+ V++ + L I
Sbjct: 166 DRLG---------SSLRHGIGHIEAIFLKWHVPPELVRVLSAMLFLLIGCLLFVLTPTFV 216
Query: 178 FSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAA 237
F E W+ +++Y+ +TLTT+GFGD VA D D+ P Y +IL GLA A+
Sbjct: 217 FCYMEDWSKLEAIYFVIVTLTTVGFGDYVA-GADPRQDS-PAYQPLVWFWILLGLAYFAS 274
Query: 238 SLNLL--VLRFVTMNTEDE 254
L + LR V+ T E
Sbjct: 275 VLTTIGNWLRVVSRRTRAE 293
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 108/224 (48%), Gaps = 14/224 (6%)
Query: 21 IGASVFDALESQTENRRWTTLSDIEKMIMNKYN-ISPDDFKLLETLILKSEPH------- 72
GA VF ++E E+ L +++ + ++ +S + +L++ +
Sbjct: 26 FGAVVFSSVELPYEDLLRQELRKLKRRFLEEHECLSEQQLEQFLGRVLEASNYGVSVLSQ 85
Query: 73 -KAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGER 131
W F + ++A+TVL+T GYGH+ P + GGK F + Y+++GIP L+ ++ +R
Sbjct: 86 ASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQR 145
Query: 132 L--NKLSSVVIRKAKRLSGCTEIEATEINLICVVTTLSSLTIAVGAAAFSRYE-GWTYFD 188
+ + V+ R ++ A ++ T+S + AA FS E W + +
Sbjct: 146 ITVHVTRRPVLYFHIRWGFSKQVVAIVHAVLLGFVTVSCF-FFIPAAVFSVLEDDWNFLE 204
Query: 189 SVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGL 232
S Y+CFI+L+TIG GD V + N + Y I ++L GL
Sbjct: 205 SFYFCFISLSTIGLGDYVPGEGYNQ-KFRELYKIGITCYLLLGL 247
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPL 120
+ Y++ LTT+GYG+ +P T GK+FT+ Y +GI L
Sbjct: 36 ALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGL 73
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 162 VVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYV 221
V+ L+ LT+ G +S EG D++Y+ +TLTT+G+G+ + Q D
Sbjct: 9 VLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGNF-SPQTDFG-------K 60
Query: 222 IFALIFILFGLAIVAASLNLL 242
IF +++I G+ +V ++ L
Sbjct: 61 IFTILYIFIGIGLVFGFIHKL 81
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPL 120
+ Y++ LTT+GYG +P T GK+FT+ Y +GI L
Sbjct: 36 ALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGL 73
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 162 VVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYV 221
V+ L+ LT+ G +S EG D++Y+ +TLTT+G+G+ + Q D
Sbjct: 9 VLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGEF-SPQTDFG-------K 60
Query: 222 IFALIFILFGLAIVAASLNLL 242
IF +++I G+ +V ++ L
Sbjct: 61 IFTILYIFIGIGLVFGFIHKL 81
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPL 120
+ Y++ LTT+GYG +P T GK+FT+ Y +GI L
Sbjct: 36 ALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 162 VVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYV 221
V+ L+ LT+ G +S EG D++Y+ +TLTT+G+GD + Q D
Sbjct: 9 VLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDF-SPQTDFG-------K 60
Query: 222 IFALIFILFGLAIVAASLNLL 242
IF +++I G+ +V ++ L
Sbjct: 61 IFTILYIFIGIGLVFGFIHKL 81
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLSSVVIRK 142
+ Y++ LTT+G G+ +P T GK+FT+ Y +GI L + + S + RK
Sbjct: 56 ALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRK 115
Query: 143 ----AKRLSGCTEIEATEINL 159
A RL ++EA E L
Sbjct: 116 KETDAYRLEVMEKLEAIEKKL 136
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 132 LNKLSSVVIRKAKRLSGCTEIEATEINLICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVY 191
+ + S ++ + L C + A + V+ L+ LT+ G +S EG D++Y
Sbjct: 1 MGSMLSFILTLKRMLKAC--LRAWKDKEFQVLFVLTFLTLTSGTIFYSTVEGLRPLDALY 58
Query: 192 YCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMNT 251
+ +TLTT+G G+ + Q D +F +++I G+ +V ++ L + +
Sbjct: 59 FSVVTLTTVGDGNF-SPQTDFG-------KVFTILYIFIGIGLVFGFIHKLAVNVQLPSI 110
Query: 252 EDERRDEAEA 261
R+ E +A
Sbjct: 111 LSNRKKETDA 120
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 162 VVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYV 221
V+ L+ LT+ G +S EG D++Y+ +TLTT+GFGD + Q D
Sbjct: 9 VLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGFGDF-SPQTDFG-------K 60
Query: 222 IFALIFILFGLAIVAASLNLL 242
IF +++I G+ +V ++ L
Sbjct: 61 IFTILYIFIGIGLVFGFIHKL 81
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPL 120
+ Y++ LTT+G+G +P T GK+FT+ Y +GI L
Sbjct: 36 ALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPL 120
+ +++ LTT+GYG +P T GK+FT+ Y +GI L
Sbjct: 36 ALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 162 VVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYV 221
V+ L+ LT+ G +S EG D++++ +TLTT+G+GD + Q D
Sbjct: 9 VLFVLTILTLISGTIFYSTVEGLRPIDALFFSVVTLTTVGYGDF-SPQTDFG-------K 60
Query: 222 IFALIFILFGLAIVAASLNLL 242
IF +++I G+ +V ++ L
Sbjct: 61 IFTILYIFIGIGLVFGFIHKL 81
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPL 120
+ +++ LTT+GYG +P T GK+FT+ Y +GI L
Sbjct: 36 ALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 162 VVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYV 221
V+ L+ LT+ G +S EG D++++ +TLTT+G+GD + Q D
Sbjct: 9 VLFVLTILTLISGTIFYSTVEGLRPIDALWFSVVTLTTVGYGDF-SPQTDFG-------K 60
Query: 222 IFALIFILFGLAIVAASLNLL 242
IF +++I G+ +V ++ L
Sbjct: 61 IFTILYIFIGIGLVFGFIHKL 81
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGI 118
+F++A +TT+GYG P TIGGK+ A+ G+
Sbjct: 364 AFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGV 399
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGI 118
+F++A +TT+GYG P TIGGK+ A+ G+
Sbjct: 364 AFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGV 399
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGI 118
+F++A +TT+GYG P TIGGK+ A+ G+
Sbjct: 379 AFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGV 414
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 188 DSVYYCFITLTTIGFGDMVA 207
D+ ++ +++TT+G+GDMV
Sbjct: 378 DAFWWAVVSMTTVGYGDMVP 397
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 14/100 (14%)
Query: 144 KRLSGCTEIEATEINLICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFG 203
K L ++ AT I L+ + I G A F EG ++ S+Y+ F+T+ T+G+G
Sbjct: 10 KHLPRVLKVPATRILLLVLAV------IIYGTAGFHFIEGESWTVSLYWTFVTIATVGYG 63
Query: 204 DMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLV 243
D + P + F + I+ G+A A ++ L+
Sbjct: 64 DYSP--------STPLGMYFTVTLIVLGIATFAVAVARLL 95
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 75 GQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNK 134
G+ W S Y+ + T+GYG +P+T G M++ + I LG+ F RL
Sbjct: 43 GESWTV--SLYWTFVTIATVGYGDYSPSTPLG----MYFTVTLIVLGIATFAVAVARL-- 94
Query: 135 LSSVVIRKAKRLSGCTEIEATEINLIC 161
L+ ++ R+ +L G ++ + +IC
Sbjct: 95 LTFLINREQMKLIGLIDVAKSRHVVIC 121
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGI 118
+F++A +TT+GYG P TIGGK+ A+ G+
Sbjct: 379 AFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGV 414
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPL 120
+ Y++ LTT+G G+ +P T GK+FT+ Y +GI L
Sbjct: 53 ALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGL 90
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 162 VVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYV 221
V+ L+ LT+ G +S EG D++Y+ +TLTT+G G+ + Q D
Sbjct: 26 VLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNF-SPQTDFG-------K 77
Query: 222 IFALIFILFGLAIV 235
IF +++I G+ +V
Sbjct: 78 IFTILYIFIGIGLV 91
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPL 120
+ Y++ LTT+G G+ +P T GK+FT+ Y +GI L
Sbjct: 53 ALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIGIGL 90
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 162 VVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYV 221
V+ L+ LT+ G +S EG D++Y+ +TLTT+G G+ + Q D
Sbjct: 26 VLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGEGNF-SPQTDFG-------K 77
Query: 222 IFALIFILFGLAIV 235
IF +++I G+ +V
Sbjct: 78 IFTILYIFIGIGLV 91
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPL 120
+ Y++ LTT+G G+ +P T GK+FT+ Y +GI L
Sbjct: 53 ALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIGIGL 90
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 162 VVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYV 221
V+ L+ LT+ G +S EG D++Y+ +TLTT+G G+ + Q D
Sbjct: 26 VLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGNGNF-SPQTDFG-------K 77
Query: 222 IFALIFILFGLAIV 235
IF +++I G+ +V
Sbjct: 78 IFTILYIFIGIGLV 91
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPL 120
+ Y++ LTT+G G+ +P T GK+FT+ Y +GI L
Sbjct: 53 ALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGL 90
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 162 VVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYV 221
V+ L+ LT+ G +S EG D++Y+ +TLTT+G G+ + Q D
Sbjct: 26 VLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGDGNF-SPQTDFG-------K 77
Query: 222 IFALIFILFGLAIV 235
IF +++I G+ +V
Sbjct: 78 IFTILYIFIGIGLV 91
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 144 KRLSGCTEIEATEINLICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFG 203
K L ++ AT I L+ + I G A F EG ++ S+Y+ F+T+ T+G+G
Sbjct: 10 KHLPRVLKVPATRILLLVLAV------IIYGTAGFHFIEGESWTVSLYWTFVTIATVGYG 63
Query: 204 DMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLV 243
D + P + F + I+ G+ A ++ L+
Sbjct: 64 DYSP--------STPLGMYFTVTLIVLGIGTFAVAVERLL 95
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 75 GQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNK 134
G+ W S Y+ + T+GYG +P+T G M++ + I LG+ F ERL
Sbjct: 43 GESWTV--SLYWTFVTIATVGYGDYSPSTPLG----MYFTVTLIVLGIGTFAVAVERL-- 94
Query: 135 LSSVVIRKAKRLSGCTEIEATEINLIC 161
L ++ R+ +L G ++ + +IC
Sbjct: 95 LEFLINREQMKLMGLIDVAKSRHVVIC 121
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPL 120
+ Y++ LTT+G G+ P T GK+FT+ Y +GI L
Sbjct: 53 ALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGIGL 90
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 162 VVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYV 221
V+ L+ LT+ G +S EG D++Y+ +TLTT+G G+ Q D
Sbjct: 26 VLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFEP-QTDFG-------K 77
Query: 222 IFALIFILFGLAIV 235
IF +++I G+ +V
Sbjct: 78 IFTILYIFIGIGLV 91
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPL 120
+ Y++ LTT+G G+ +P T GK+FT+ Y +GI L
Sbjct: 35 ALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGL 72
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 162 VVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYV 221
V+ L+ LT+ G +S EG D++Y+ +TLTT+G G+ + Q D
Sbjct: 8 VLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGDGNF-SPQTDFG-------K 59
Query: 222 IFALIFILFGLAIVAASLNLL 242
IF +++I G+ +V ++ L
Sbjct: 60 IFTILYIFIGIGLVFGFIHKL 80
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPL 120
+ Y++ LTT+G G +P T GK+FT+ Y +GI L
Sbjct: 36 ALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGL 73
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 162 VVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYV 221
V+ L+ LT+ G +S EG D++Y+ +TLTT+G GD + Q D
Sbjct: 9 VLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGDGDF-SPQTDFG-------K 60
Query: 222 IFALIFILFGLAIVAASLNLL 242
IF +++I G+ +V ++ L
Sbjct: 61 IFTILYIFIGIGLVFGFIHKL 81
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 72 HKAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGI-------PLGLV- 123
H G+ + F Y+ TV+TT+G+G T + G LF + G+ P G V
Sbjct: 44 HLEGRAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVS 103
Query: 124 MF 125
MF
Sbjct: 104 MF 105
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 72 HKAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGI-------PLGLV- 123
H G+ + F Y+ TV+TT+G+G T + G LF + G+ P G V
Sbjct: 44 HLEGRAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLLIILPFGFVS 103
Query: 124 MF 125
MF
Sbjct: 104 MF 105
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 33.5 bits (75), Expect = 0.17, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 171 IAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGD 204
I G A F EG ++ S+Y+ F+T+ T+G+GD
Sbjct: 21 IIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGD 54
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 75 GQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERL 132
G+ W S Y+ + T+GYG +P+T G M++ I LG+ F ERL
Sbjct: 33 GESWTV--SLYWTFVTIATVGYGDYSPHTPLG----MYFTCTLIVLGIGTFAVAVERL 84
>pdb|3K03|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K03|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K04|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
pdb|3K04|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
Length = 96
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 162 VVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYV 221
V+ L+ LT+ G +S EG D++Y+ +TLTT+G DT P
Sbjct: 9 VLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVG-------------DTPPPQT 55
Query: 222 ----IFALIFILFGLAIV 235
IF +++I G+ +V
Sbjct: 56 DFGKIFTILYIFIGIGLV 73
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVM 124
+ Y++ LTT+G P T GK+FT+ Y +GI GLV
Sbjct: 36 ALYFSVVTLTTVG-DTPPPQTDFGKIFTILYIFIGI--GLVF 74
>pdb|1QHB|A Chain A, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|B Chain B, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|C Chain C, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|D Chain D, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|E Chain E, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|F Chain F, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
Length = 596
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 184 WTYFDSVY-----YCFITLTT-IGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAA 237
W +FDS+Y C I L + F + Q+++ LD + +V F +L L A
Sbjct: 329 WVHFDSLYEAYLNACLILLANGVPFDPNLPFQQEDKLDNQDVFVNFGSAHVL-SLVTEVA 387
Query: 238 SLNLLVLRFVTMNTEDERRDEA 259
+ L +R+ N R EA
Sbjct: 388 TRALKAVRYQKFNIHRRLRPEA 409
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
Query: 186 YFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVA 236
Y D++++ +T TT+G+GD+V + P I A I +LFG+A +
Sbjct: 44 YPDALWWAIVTATTVGYGDIVPV--------TPIGRILASIMMLFGIAFIG 86
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 80 FAGSFYYATTVLTTIGYGHSTPNTIGGKLFT---MFYAMVGIPL--GLV 123
F G+F+++ L T+GYG P T+ +F M GI L GLV
Sbjct: 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLV 145
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 159 LICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKP 218
L V TL +L +G A + + + ++ TL T+G+GDM P
Sbjct: 70 LFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDM-----------HP 118
Query: 219 EYV---IFALIFILFGLAIVAASLNLLVLRFV 247
+ V A + I G++ +A S L+ RF
Sbjct: 119 QTVYAHAIATLEIFVGMSGIALSTGLVFARFA 150
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 80 FAGSFYYATTVLTTIGYGHSTPNTIGGKLFT---MFYAMVGIPL--GLV 123
F G+F+++ L T+GYG P T+ +F M GI L GLV
Sbjct: 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLV 145
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 159 LICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKP 218
L V TL +L +G A + + + ++ TL T+G+GDM P
Sbjct: 70 LFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDM-----------HP 118
Query: 219 EYV---IFALIFILFGLAIVAASLNLLVLRFV 247
+ V A + I G++ +A S L+ RF
Sbjct: 119 QTVYAHAIATLEIFVGMSGIALSTGLVFARFA 150
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 171 IAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGD 204
I G A F EG ++ S+Y+ F+T+ T+G+GD
Sbjct: 14 IIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGD 47
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 75 GQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGI 118
G+ W S Y+ + T+GYG +P+T G FT ++GI
Sbjct: 26 GESWTV--SLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGI 67
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 171 IAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGD 204
I G A F EG ++ S+Y+ F+T+ T+G+GD
Sbjct: 14 IIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGD 47
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 75 GQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGI 118
G+ W S Y+ + T+GYG +P+T G FT ++GI
Sbjct: 26 GESWTV--SLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGI 67
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 171 IAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGD 204
I G A F EG ++ S+Y+ F+T+ T+G+GD
Sbjct: 14 IIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGD 47
>pdb|3K06|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K06|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K08|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
pdb|3K08|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
Length = 96
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 162 VVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYV 221
V+ L+ LT+ G +S EG D++Y+ +TLTT+G +T P
Sbjct: 9 VLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVG-------------NTPPPQT 55
Query: 222 ----IFALIFILFGLAIV 235
IF +++I G+ +V
Sbjct: 56 DFGKIFTILYIFIGIGLV 73
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVM 124
+ Y++ LTT+G P T GK+FT+ Y +GI GLV
Sbjct: 36 ALYFSVVTLTTVG-NTPPPQTDFGKIFTILYIFIGI--GLVF 74
>pdb|3K0D|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0D|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0G|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
pdb|3K0G|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
Length = 96
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 162 VVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYV 221
V+ L+ LT+ G +S EG D++Y+ +TLTT+G +T P
Sbjct: 9 VLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVG-------------ETPPPQT 55
Query: 222 ----IFALIFILFGLAIV 235
IF +++I G+ +V
Sbjct: 56 DFGKIFTILYIFIGIGLV 73
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVM 124
+ Y++ LTT+G P T GK+FT+ Y +GI GLV
Sbjct: 36 ALYFSVVTLTTVG-ETPPPQTDFGKIFTILYIFIGI--GLVF 74
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 80 FAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGI 118
F G+F+++ L T+GYG P T+ VG+
Sbjct: 79 FGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGM 117
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 171 IAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGD 204
I G A F EG ++ S+Y+ F+T+ +G+GD
Sbjct: 14 IIYGTAGFHFIEGESWTVSLYWTFVTIAAVGYGD 47
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 17/20 (85%)
Query: 187 FDSVYYCFITLTTIGFGDMV 206
FD++++ +T TT+G+GD+V
Sbjct: 179 FDALWWAVVTATTVGYGDVV 198
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 17/20 (85%)
Query: 187 FDSVYYCFITLTTIGFGDMV 206
FD++++ +T TT+G+GD+V
Sbjct: 167 FDALWWAVVTATTVGYGDVV 186
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 28.5 bits (62), Expect = 6.5, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 66 ILKSEPHKAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGI-PLGLV 123
+L Q + + +++ TT+GYG P T+ G+L + + GI GLV
Sbjct: 26 VLAERGAPGAQLITYPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGITSFGLV 84
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 28.5 bits (62), Expect = 6.6, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 66 ILKSEPHKAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGI-PLGLV 123
+L Q + + +++ TT+GYG P T+ G+L + + GI GLV
Sbjct: 27 VLAERGAPGAQLITYPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGITSFGLV 85
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGI-PLGLV 123
+ +++ TT+GYG P T+ G+L + + GI GLV
Sbjct: 44 ALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLV 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,726,823
Number of Sequences: 62578
Number of extensions: 312539
Number of successful extensions: 825
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 732
Number of HSP's gapped (non-prelim): 87
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)