Query psy8844
Match_columns 353
No_of_seqs 358 out of 2859
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 20:34:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8844.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8844hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4404|consensus 100.0 3.9E-75 8.5E-80 548.3 30.2 317 1-318 2-319 (350)
2 KOG1418|consensus 100.0 1.4E-32 3.1E-37 271.3 16.1 241 3-244 14-301 (433)
3 PF07885 Ion_trans_2: Ion chan 99.5 1.7E-14 3.7E-19 112.4 5.5 71 169-247 5-78 (79)
4 PF07885 Ion_trans_2: Ion chan 99.4 2.5E-14 5.4E-19 111.5 1.6 58 76-133 21-78 (79)
5 PRK10537 voltage-gated potassi 99.4 1.7E-13 3.6E-18 137.2 7.5 95 171-274 148-248 (393)
6 KOG3713|consensus 99.3 9E-12 2E-16 124.9 11.3 64 185-256 377-440 (477)
7 KOG4404|consensus 99.1 1.6E-10 3.4E-15 110.7 8.0 66 77-142 184-257 (350)
8 KOG1545|consensus 99.1 1.3E-11 2.9E-16 119.3 0.3 67 184-258 392-458 (507)
9 KOG3713|consensus 99.1 3.7E-10 8E-15 113.5 8.5 96 13-143 346-441 (477)
10 PRK10537 voltage-gated potassi 98.9 4.1E-09 8.9E-14 105.7 7.9 55 76-130 165-219 (393)
11 PLN03192 Voltage-dependent pot 98.8 1.8E-09 3.9E-14 117.7 4.2 55 80-134 251-305 (823)
12 KOG1420|consensus 98.8 3.9E-09 8.5E-14 107.3 6.0 94 169-274 259-365 (1103)
13 KOG4390|consensus 98.8 5E-10 1.1E-14 109.4 -1.5 60 185-252 356-415 (632)
14 KOG1419|consensus 98.8 6.7E-09 1.5E-13 105.3 5.9 56 185-248 269-324 (654)
15 PLN03192 Voltage-dependent pot 98.7 7E-08 1.5E-12 105.3 11.5 57 186-250 251-307 (823)
16 KOG1418|consensus 98.6 2.9E-08 6.2E-13 98.1 4.9 58 183-248 113-170 (433)
17 KOG1420|consensus 98.6 6.7E-08 1.4E-12 98.5 5.2 95 5-132 247-341 (1103)
18 KOG1419|consensus 98.4 4.9E-08 1.1E-12 99.2 0.5 53 79-131 269-321 (654)
19 KOG1545|consensus 98.4 1.6E-07 3.4E-12 91.5 2.8 58 79-136 393-450 (507)
20 KOG0498|consensus 98.2 8.4E-07 1.8E-11 94.5 4.7 59 79-137 294-352 (727)
21 KOG0501|consensus 98.2 1.4E-06 3E-11 89.3 5.7 58 79-136 423-480 (971)
22 KOG0498|consensus 98.2 2E-06 4.3E-11 91.7 5.3 57 186-250 295-351 (727)
23 KOG3193|consensus 98.2 5.4E-06 1.2E-10 84.5 8.1 81 184-275 216-296 (1087)
24 KOG3684|consensus 98.0 3.6E-06 7.9E-11 84.3 3.9 88 7-132 253-340 (489)
25 KOG4390|consensus 98.0 1.9E-06 4E-11 84.8 1.4 47 79-125 356-402 (632)
26 KOG3684|consensus 97.6 8E-05 1.7E-09 74.8 6.1 76 164-247 258-341 (489)
27 PF01007 IRK: Inward rectifier 97.6 8.1E-05 1.7E-09 73.4 5.8 59 184-248 83-141 (336)
28 PF01007 IRK: Inward rectifier 97.1 0.00019 4E-09 70.9 1.3 54 79-132 84-139 (336)
29 PRK05482 potassium-transportin 96.9 0.0046 9.9E-08 64.5 9.5 139 80-231 329-491 (559)
30 KOG0501|consensus 96.8 0.0018 3.9E-08 67.1 5.1 57 186-250 424-480 (971)
31 KOG3193|consensus 95.9 0.019 4E-07 59.4 7.0 54 75-128 213-266 (1087)
32 PRK10750 potassium transporter 95.8 0.12 2.7E-06 53.5 12.8 154 79-237 304-472 (483)
33 TIGR00933 2a38 potassium uptak 95.7 0.03 6.5E-07 56.3 7.5 139 78-231 230-389 (390)
34 KOG0500|consensus 95.5 0.017 3.6E-07 59.1 4.8 56 78-134 182-237 (536)
35 PF00520 Ion_trans: Ion transp 95.0 0.048 1E-06 47.5 5.6 55 184-241 144-199 (200)
36 KOG3827|consensus 94.9 0.078 1.7E-06 52.8 7.3 46 79-124 112-159 (400)
37 KOG0500|consensus 94.7 0.16 3.5E-06 52.0 8.9 56 188-252 186-241 (536)
38 TIGR00933 2a38 potassium uptak 93.8 0.12 2.7E-06 51.9 6.1 129 77-205 13-148 (390)
39 KOG3827|consensus 93.0 0.46 1E-05 47.5 8.4 56 185-246 112-167 (400)
40 PF02386 TrkH: Cation transpor 92.2 0.039 8.5E-07 54.6 -0.1 152 78-231 175-338 (354)
41 COG0168 TrkG Trk-type K+ trans 91.1 1.6 3.5E-05 45.6 10.2 151 85-238 313-478 (499)
42 TIGR00934 2a38euk potassium up 90.4 0.32 7E-06 52.9 4.5 72 9-118 585-660 (800)
43 PF00520 Ion_trans: Ion transp 89.4 0.13 2.7E-06 44.8 0.4 48 79-126 145-198 (200)
44 KOG0499|consensus 86.2 0.56 1.2E-05 49.4 2.9 54 79-133 403-456 (815)
45 COG0168 TrkG Trk-type K+ trans 84.3 24 0.00053 36.9 14.0 158 81-241 91-252 (499)
46 PF00060 Lig_chan: Ligand-gate 81.0 0.22 4.8E-06 42.0 -2.1 56 77-133 42-97 (148)
47 KOG0499|consensus 81.0 1.7 3.8E-05 45.8 3.9 56 182-246 400-455 (815)
48 PRK10750 potassium transporter 73.1 19 0.00041 37.5 9.0 24 180-203 201-224 (483)
49 PF11337 DUF3139: Protein of u 64.8 51 0.0011 25.7 7.9 55 1-60 1-55 (85)
50 PF00060 Lig_chan: Ligand-gate 62.9 12 0.00025 31.4 4.2 57 185-250 44-100 (148)
51 KOG3676|consensus 57.5 60 0.0013 35.7 9.2 59 185-246 586-647 (782)
52 PF02386 TrkH: Cation transpor 46.4 1.2 2.6E-05 44.1 -5.3 39 79-117 53-97 (354)
53 KOG4440|consensus 46.3 11 0.00023 40.4 1.4 56 77-132 611-666 (993)
54 PRK02983 lysS lysyl-tRNA synth 44.3 3E+02 0.0064 31.9 12.6 19 305-323 273-291 (1094)
55 PF06305 DUF1049: Protein of u 44.2 74 0.0016 23.2 5.5 23 228-250 23-45 (68)
56 PRK10669 putative cation:proto 42.7 32 0.0007 36.1 4.5 18 264-283 415-432 (558)
57 KOG3599|consensus 41.7 1.8E+02 0.004 32.4 10.1 26 102-127 543-568 (798)
58 PRK05482 potassium-transportin 40.9 74 0.0016 33.8 6.7 40 78-117 450-491 (559)
59 TIGR01323 nitrile_alph nitrile 39.1 13 0.00027 33.6 0.6 22 300-321 86-109 (185)
60 PRK03562 glutathione-regulated 38.7 41 0.00089 36.1 4.6 20 262-283 396-415 (621)
61 KOG1052|consensus 38.2 40 0.00088 36.0 4.4 56 76-132 378-433 (656)
62 PLN03223 Polycystin cation cha 36.6 1.4E+02 0.0029 35.3 8.1 28 223-250 1399-1426(1634)
63 COG5353 Uncharacterized protei 31.2 87 0.0019 27.6 4.5 38 8-45 9-46 (161)
64 TIGR00934 2a38euk potassium up 25.8 62 0.0013 35.8 3.3 72 171-252 57-135 (800)
65 KOG1052|consensus 25.3 1.5E+02 0.0033 31.7 6.1 53 186-247 382-434 (656)
66 PF15086 UPF0542: Uncharacteri 24.5 2.6E+02 0.0055 21.7 5.4 35 216-250 17-51 (74)
67 KOG3491|consensus 24.2 78 0.0017 23.4 2.5 20 11-30 40-59 (65)
68 TIGR01710 typeII_sec_gspG gene 23.8 1.8E+02 0.004 24.5 5.3 26 223-248 3-28 (134)
69 KOG1053|consensus 22.9 3.9E+02 0.0085 30.4 8.4 55 185-247 609-663 (1258)
70 KOG2302|consensus 22.5 1.8E+02 0.0038 33.5 5.8 33 216-248 1357-1390(1956)
71 PRK03659 glutathione-regulated 21.9 41 0.00088 35.9 1.0 19 263-283 397-415 (601)
No 1
>KOG4404|consensus
Probab=100.00 E-value=3.9e-75 Score=548.30 Aligned_cols=317 Identities=56% Similarity=0.883 Sum_probs=284.0
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHhhcCCCCCCCCccc
Q psy8844 1 MKKQNIRTLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKF 80 (353)
Q Consensus 1 mk~~~vr~l~L~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~~n~s~~~~~~~e~~~~~~~~~~~~~~W~~ 80 (353)
||+||+|+++|++|+++|+++||+||++||+++|.++++.+++.++++++|||+|++|++.+|+++.+++||+++++|+|
T Consensus 2 m~~qnvR~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF 81 (350)
T KOG4404|consen 2 MKRQNVRTLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKF 81 (350)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCcccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhHHH
Q psy8844 81 AGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLSSVVIRKAKRLSGCTEIEATEINLI 160 (353)
Q Consensus 81 ~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 160 (353)
.+||||++|++|||||||.+|.|.+||+|||+|+++|||+++++|+++|++++++.+.++++.|+....++.+++..+++
T Consensus 82 ~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~~r~~~~~r~~~~S~~~l~ 161 (350)
T KOG4404|consen 82 AGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNTFVAYILRRCRRRLGRRRWDVSVYNLV 161 (350)
T ss_pred CcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888889999999
Q ss_pred HHHHHHHHHHHHhhhHHHhhhcCCCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHH
Q psy8844 161 CVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLN 240 (353)
Q Consensus 161 l~~~~l~~~~i~~ga~~f~~~E~~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~ 240 (353)
++.+....++++.||++|+.+|+|||+||+||||||+|||||||+|+.|++++++++|.|+.+++++|++|+++++.++|
T Consensus 162 ~i~~~~~~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~N 241 (350)
T KOG4404|consen 162 LILFTACILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLN 241 (350)
T ss_pred HHHHHHHHHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhCCCEEEe-cccCCCCCcccccccCCCCccccccCCCCCceeeeecCCCCCCCCC
Q psy8844 241 LLVLRFVTMNTEDERRDEAEALQAAQGAVRLE-GDVITADGSILSGQLGENNAVYHNISTTTSMCTCTCNCFRRDSDLQ 318 (353)
Q Consensus 241 ~i~~~~~~~~~~~~~r~~~~~~~~l~~hviv~-g~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~csc~c~~~~~~~~~~ 318 (353)
+++.+|++++.++++|++++......+..-+. |++....+...+...++.+ ..-.-....+.|||.|.+.+.++.++
T Consensus 242 llvLrf~t~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~ 319 (350)
T KOG4404|consen 242 LLVLRFMTMNAEDERRDEQEACSAAQNARGLGGGDSPRRNNAAASFGCGRRR-SSMRDSVTSSLASCHLRQKQLSECLN 319 (350)
T ss_pred HHHHHHHHhhhHHHHHHHhhhHHHhcccccCCCCCCCCcCccccccccccCC-ccccccccccceeeeeeccccccccc
Confidence 99999999999999999988655544443333 2444444432222222222 11122457789999999877766666
No 2
>KOG1418|consensus
Probab=100.00 E-value=1.4e-32 Score=271.25 Aligned_cols=241 Identities=30% Similarity=0.463 Sum_probs=162.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHH--------hhhcCCCh--HHHHH-----HHHH-
Q psy8844 3 KQNIRTLSLIVCTFTYLLIGASVFDALESQTENRR-WTTLSDIEKMI--------MNKYNISP--DDFKL-----LETL- 65 (353)
Q Consensus 3 ~~~vr~l~L~v~~~~YlliGA~vF~~lE~~~e~~~-~~~l~~~~~~~--------~~~~n~s~--~~~~~-----~e~~- 65 (353)
+...+++.++..++.|.+.||.+|..+|+++|.+. .........+. .+..+... .+.+. .+..
T Consensus 14 ~~~~~~~~l~~~~~~y~~~ga~~f~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (433)
T KOG1418|consen 14 RFGIRHVLLLLLVLLYLVLGAFIFQALERPKELELKQRELGLLLSNFILRIWRCIDELVLEEESRTKAHKQKASVLLALL 93 (433)
T ss_pred hhhcchhhHHHHHHHHHhhHHHHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678888888899999999999999999998766 22222211111 11111110 11000 0000
Q ss_pred ---Hh-----hcCCCCCCCCccccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHHHHHH
Q psy8844 66 ---IL-----KSEPHKAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLSS 137 (353)
Q Consensus 66 ---~~-----~~~~~~~~~~W~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~~~~ 137 (353)
.. ....+....+|+|++|+||++|++||||||+++|.|.+||+||++|+++|||+++++++++|+.+.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~ 173 (433)
T KOG1418|consen 94 LGVANSALSLEGDESPDTQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLR 173 (433)
T ss_pred hhcchhhcccccccCCCCcceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 00 0112234568999999999999999999999999999999999999999999999999999999887776
Q ss_pred HHHHh---hhhccc----cc----------ccc--cc---hhHHHHHHHHHHHHHHHhhhHHHhhhcCCCccchhheeee
Q psy8844 138 VVIRK---AKRLSG----CT----------EIE--AT---EINLICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFI 195 (353)
Q Consensus 138 ~i~~~---~~~~~~----~~----------~~~--~~---~~~l~l~~~~l~~~~i~~ga~~f~~~E~~s~~da~Yf~~i 195 (353)
.+.++ ..+... .. ... .. ...+ ..+..++.+++..|+.+++.+|+|+|++|+||+|+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~w~f~~~~Yf~fi 252 (433)
T KOG1418|consen 174 KLYRRRHVELQRDRIRSNLRRSIGLRNRSVELGIELLDELRFIL-LLLLGISLVYLSPGSLLFSLQEQWSFIEAFYFSFI 252 (433)
T ss_pred HHHHHhhhhhhhhhhhhhhhccccchhcccccchhhccCcceeh-hhhheeeEEEecccceeeeceeceeeEeeeeEEEE
Confidence 65531 111100 00 000 00 1111 12222233467789999999999999999999999
Q ss_pred eccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy8844 196 TLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVL 244 (353)
Q Consensus 196 TlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~ 244 (353)
|+|||||||++|.+.+........+..+..+++++|+..++++......
T Consensus 253 sltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 301 (433)
T KOG1418|consen 253 SLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVLLGPDR 301 (433)
T ss_pred EeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHhhcccc
Confidence 9999999999996532110011124478889999999999998754433
No 3
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.51 E-value=1.7e-14 Score=112.36 Aligned_cols=71 Identities=37% Similarity=0.759 Sum_probs=58.2
Q ss_pred HHHHhhhHHHhh---hcCCCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy8844 169 LTIAVGAAAFSR---YEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLR 245 (353)
Q Consensus 169 ~~i~~ga~~f~~---~E~~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~ 245 (353)
++++.|++.+.. .|+|++.||+||+++|+|||||||++|. ++.+|+++++++++|+.++++.++.+...
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~--------t~~gr~~~~~~~~~G~~~~~~~~~~~~~~ 76 (79)
T PF07885_consen 5 LVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQ--------TPAGRIFTIIYMLIGIFLFALFLSVLASV 76 (79)
T ss_dssp HHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTS--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCC--------ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666 6789999999999999999999999994 46789999999999999999999988876
Q ss_pred HH
Q psy8844 246 FV 247 (353)
Q Consensus 246 ~~ 247 (353)
+.
T Consensus 77 l~ 78 (79)
T PF07885_consen 77 LT 78 (79)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 4
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.44 E-value=2.5e-14 Score=111.46 Aligned_cols=58 Identities=31% Similarity=0.753 Sum_probs=52.2
Q ss_pred CCccccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHH
Q psy8844 76 QQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLN 133 (353)
Q Consensus 76 ~~W~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~ 133 (353)
++|++.+|+||+++++|||||||+.|.|+.||+++++++++|++++.+.++.+++.+.
T Consensus 21 ~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 21 EKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp STTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3899999999999999999999999999999999999999999999999999888765
No 5
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.44 E-value=1.7e-13 Score=137.20 Aligned_cols=95 Identities=15% Similarity=0.296 Sum_probs=71.7
Q ss_pred HHhhhHHHhhhcC------CCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy8844 171 IAVGAAAFSRYEG------WTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVL 244 (353)
Q Consensus 171 i~~ga~~f~~~E~------~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~ 244 (353)
++.|.+.+.+.|+ +++.||+||+++|+||+||||++|. ++.+|+|+++++++|++++++.++.+..
T Consensus 148 ~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~tTvGyGdi~p~--------t~~grl~~i~~ii~Gi~vf~~~is~i~~ 219 (393)
T PRK10537 148 LFYSTFGALYLGDGFSPPIESLSTAFYFSIVTMSTVGYGDIVPV--------SESARLFTISVIILGITVFATSISAIFG 219 (393)
T ss_pred HHHHHHHHHHHccccCcCCCCHHHHHHhhheeeecccCCCCCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554454453 7999999999999999999999994 3678999999999999999999988887
Q ss_pred HHHhhhhhhHHHHHHHHHHhhCCCEEEecc
Q psy8844 245 RFVTMNTEDERRDEAEALQAAQGAVRLEGD 274 (353)
Q Consensus 245 ~~~~~~~~~~~r~~~~~~~~l~~hviv~g~ 274 (353)
.+++.+.++..+..++ ....+||++|||+
T Consensus 220 p~i~~~l~~~~~~~~~-~~~~k~HvII~G~ 248 (393)
T PRK10537 220 PVIRGNLKRLVKGRIS-HMHRKDHFIICGH 248 (393)
T ss_pred HHHHHHHHHHHHhhhh-hcccCCeEEEECC
Confidence 7776554432221112 1234799999999
No 6
>KOG3713|consensus
Probab=99.32 E-value=9e-12 Score=124.94 Aligned_cols=64 Identities=27% Similarity=0.474 Sum_probs=56.6
Q ss_pred CccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q psy8844 185 TYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMNTEDERR 256 (353)
Q Consensus 185 s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~~~~~~~~~r 256 (353)
|..-++||++||||||||||++|.| ..|++++..-++.|+.++|+++..|++.|...+.+.+.+
T Consensus 377 SIPa~~WWaiVTMTTVGYGDm~P~T--------~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~ 440 (477)
T KOG3713|consen 377 SIPAGFWWAVVTMTTVGYGDMVPVT--------VLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAR 440 (477)
T ss_pred cccchhheeeEEEeeecccCccccc--------cchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHH
Confidence 5678899999999999999999954 679999999999999999999999999999776554433
No 7
>KOG4404|consensus
Probab=99.11 E-value=1.6e-10 Score=110.65 Aligned_cols=66 Identities=21% Similarity=0.432 Sum_probs=55.7
Q ss_pred CccccccceeeEEEEEeccccccCcC--------CCCchhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHh
Q psy8844 77 QWKFAGSFYYATTVLTTIGYGHSTPN--------TIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLSSVVIRK 142 (353)
Q Consensus 77 ~W~~~~a~yf~~~t~TTIGYG~i~P~--------T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~~~~~i~~~ 142 (353)
.|+|.||+|||++|+|||||||.++. -+..+.+..+|+++|+.++...++.+.-++.....+..||
T Consensus 184 ~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~~~~rr 257 (350)
T KOG4404|consen 184 GWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNAEDERR 257 (350)
T ss_pred CcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999885 3567899999999999998888887776666555555544
No 8
>KOG1545|consensus
Probab=99.10 E-value=1.3e-11 Score=119.29 Aligned_cols=67 Identities=22% Similarity=0.416 Sum_probs=58.4
Q ss_pred CCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q psy8844 184 WTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMNTEDERRDE 258 (353)
Q Consensus 184 ~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~~~~~~~~~r~~ 258 (353)
-|..|||||+++|||||||||.+|.+ +.||+...+..+.|+..+++....+++.|.-.+.++.+..+
T Consensus 392 ~SIPdaFWwavVTMTTVGYGDm~P~T--------vgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYhrEte~ee 458 (507)
T KOG1545|consen 392 SSIPDAFWWAVVTMTTVGYGDMVPVT--------VGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEE 458 (507)
T ss_pred CcCcccceEEEEEEEeeccccceecc--------cCceehhhHHhhhhheEecccccEEEecccceeeccccchh
Confidence 36799999999999999999999965 88999999999999999999999999999877665544433
No 9
>KOG3713|consensus
Probab=99.06 E-value=3.7e-10 Score=113.46 Aligned_cols=96 Identities=23% Similarity=0.386 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHhhcCCCCCCCCccccccceeeEEEEE
Q psy8844 13 VCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSFYYATTVLT 92 (353)
Q Consensus 13 v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~~n~s~~~~~~~e~~~~~~~~~~~~~~W~~~~a~yf~~~t~T 92 (353)
.++++|+.+|-++|..+..-.|+. +|+. .==+...++|||++|||
T Consensus 346 glLllfL~~GI~iFStlvY~~Ek~---------------------------------~~~~--~FtSIPa~~WWaiVTMT 390 (477)
T KOG3713|consen 346 GLLLLFLAVGIVIFSTLVYFAEKD---------------------------------EPDT--KFTSIPAGFWWAVVTMT 390 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc---------------------------------CCCC--CCccccchhheeeEEEe
Confidence 456678999999999887443322 1111 12258899999999999
Q ss_pred eccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHhh
Q psy8844 93 TIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLSSVVIRKA 143 (353)
Q Consensus 93 TIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~~~~~i~~~~ 143 (353)
||||||++|.|..||++...-++.||-+.++-+..+.+-+.+.++....+.
T Consensus 391 TVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~ 441 (477)
T KOG3713|consen 391 TVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKARE 441 (477)
T ss_pred eecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888887777776555443
No 10
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.88 E-value=4.1e-09 Score=105.73 Aligned_cols=55 Identities=24% Similarity=0.456 Sum_probs=50.6
Q ss_pred CCccccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHH
Q psy8844 76 QQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGE 130 (353)
Q Consensus 76 ~~W~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~ 130 (353)
..|++.+|+||+++|+||+||||+.|.|..||+|+++++++|++++++.++.+..
T Consensus 165 ~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~ 219 (393)
T PRK10537 165 PIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFG 219 (393)
T ss_pred CCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999887776544
No 11
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.84 E-value=1.8e-09 Score=117.66 Aligned_cols=55 Identities=20% Similarity=0.476 Sum_probs=52.5
Q ss_pred ccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHHH
Q psy8844 80 FAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNK 134 (353)
Q Consensus 80 ~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~ 134 (353)
|..|+||+++|+|||||||++|.|..+|+|+++++++|+.++++.++++++.+..
T Consensus 251 Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~ 305 (823)
T PLN03192 251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 305 (823)
T ss_pred HHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999987754
No 12
>KOG1420|consensus
Probab=98.83 E-value=3.9e-09 Score=107.29 Aligned_cols=94 Identities=21% Similarity=0.366 Sum_probs=71.4
Q ss_pred HHHHhhhHHHhhhcC-------------CCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHH
Q psy8844 169 LTIAVGAAAFSRYEG-------------WTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIV 235 (353)
Q Consensus 169 ~~i~~ga~~f~~~E~-------------~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~ 235 (353)
..++.+|.+.+..|+ .+|+|+.||..+||+||||||+.- ++..+|.|.+++++.|++++
T Consensus 259 svwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc--------~t~lgrlfmvffil~glamf 330 (1103)
T KOG1420|consen 259 SVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYC--------KTTLGRLFMVFFILGGLAMF 330 (1103)
T ss_pred HHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceee--------hhhhhHHHHHHHHHHHHHHH
Confidence 345567777777663 479999999999999999999996 45789999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhCCCEEEecc
Q psy8844 236 AASLNLLVLRFVTMNTEDERRDEAEALQAAQGAVRLEGD 274 (353)
Q Consensus 236 a~~~~~i~~~~~~~~~~~~~r~~~~~~~~l~~hviv~g~ 274 (353)
+..+.-+...+-. +++...+-+.++.++|+++||.
T Consensus 331 asyvpeiielign----r~kyggeyk~ehgkkhivvcgh 365 (1103)
T KOG1420|consen 331 ASYVPEIIELIGN----RKKYGGEYKAEHGKKHIVVCGH 365 (1103)
T ss_pred HhhhHHHHHHHcc----ccccCceeehhcCCeeEEEecc
Confidence 9877666554433 2222111123678999999997
No 13
>KOG4390|consensus
Probab=98.80 E-value=5e-10 Score=109.40 Aligned_cols=60 Identities=28% Similarity=0.499 Sum_probs=53.6
Q ss_pred CccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8844 185 TYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMNTE 252 (353)
Q Consensus 185 s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~~~~~~ 252 (353)
+...||||+++||||.||||+||. +..|++|..+.-+.|+.++++....+++.|-....+
T Consensus 356 sIPaaFWYTIVTmTTLGYGDMVp~--------TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQ 415 (632)
T KOG4390|consen 356 SIPAAFWYTIVTMTTLGYGDMVPS--------TIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQ 415 (632)
T ss_pred cCcHhHhhheeeeeeccccccchH--------HHHHHHhhhhhcccceEEEeccccEEEechhHHHhh
Confidence 567889999999999999999994 478999999999999999999999999888765544
No 14
>KOG1419|consensus
Probab=98.78 E-value=6.7e-09 Score=105.33 Aligned_cols=56 Identities=34% Similarity=0.487 Sum_probs=51.4
Q ss_pred CccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8844 185 TYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVT 248 (353)
Q Consensus 185 s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~~ 248 (353)
||-||+||..||+|||||||.+|. +..+|+++..+.++|+.+++++-+.+-+.|.-
T Consensus 269 TyADALWWG~ITltTIGYGDk~P~--------TWlGr~laa~fsligiSFFALPAGILGSGfAL 324 (654)
T KOG1419|consen 269 TYADALWWGVITLTTIGYGDKTPQ--------TWLGRLLAACFSLIGISFFALPAGILGSGFAL 324 (654)
T ss_pred hHHHHHHhhheeEEeeccCCcCcc--------cchhHHHHHHHHHHHHHHHhcccccccchhhh
Confidence 789999999999999999999994 47899999999999999999999998777763
No 15
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.71 E-value=7e-08 Score=105.27 Aligned_cols=57 Identities=28% Similarity=0.591 Sum_probs=50.0
Q ss_pred ccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8844 186 YFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMN 250 (353)
Q Consensus 186 ~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~~~~ 250 (353)
|..|+||+++|+|||||||++|. ++..++++++++++|++++++.++.++..+.+..
T Consensus 251 Yi~slYwai~TmtTVGYGDi~p~--------t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~ 307 (823)
T PLN03192 251 YISAIYWSITTMTTVGYGDLHAV--------NTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT 307 (823)
T ss_pred HHHHHHHHHHHHhhccCCCcCCC--------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44489999999999999999994 3678999999999999999999999988776544
No 16
>KOG1418|consensus
Probab=98.63 E-value=2.9e-08 Score=98.08 Aligned_cols=58 Identities=17% Similarity=0.476 Sum_probs=52.1
Q ss_pred CCCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8844 183 GWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVT 248 (353)
Q Consensus 183 ~~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~~ 248 (353)
.|+|.+|+||+++++||||||+++|. ++.||+++++|.++|+.++.++++-+...+.+
T Consensus 113 ~W~f~~al~fs~tv~TTIGYG~i~P~--------T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~ 170 (433)
T KOG1418|consen 113 QWSFSSALLFSITVITTIGYGNIAPR--------TDAGRLFTILYALVGIPLMLLILADIGKFLAD 170 (433)
T ss_pred ceecchhHhhhhheeeeccCCcccCC--------cCcchhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999994 47899999999999999999888887666654
No 17
>KOG1420|consensus
Probab=98.56 E-value=6.7e-08 Score=98.51 Aligned_cols=95 Identities=21% Similarity=0.369 Sum_probs=76.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHhhcCCCCCCCCccccccc
Q psy8844 5 NIRTLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSF 84 (353)
Q Consensus 5 ~vr~l~L~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~~n~s~~~~~~~e~~~~~~~~~~~~~~W~~~~a~ 84 (353)
.+|...|+.+++...+.||.+.+.+|...+. +++ .......+|+++.
T Consensus 247 sirl~qlvsifisvwltaag~ihllensgdp---------~~~------------------------f~n~hrltyw~cv 293 (1103)
T KOG1420|consen 247 SIRLVQLVSIFISVWLTAAGFIHLLENSGDP---------WEN------------------------FQNNHRLTYWECV 293 (1103)
T ss_pred hhhHHHHHHHHHHHHHhhcceeehhhcCCCh---------hHh------------------------ccCcccchhhhee
Confidence 5778888888888899999999999933210 000 0111256899999
Q ss_pred eeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHH
Q psy8844 85 YYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERL 132 (353)
Q Consensus 85 yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l 132 (353)
||.++|++|+||||+..+|..||+|.+||++.|+++++..+..+.+.+
T Consensus 294 yfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiieli 341 (1103)
T KOG1420|consen 294 YFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELI 341 (1103)
T ss_pred eeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999999999999999999999999999999999998877776655
No 18
>KOG1419|consensus
Probab=98.43 E-value=4.9e-08 Score=99.20 Aligned_cols=53 Identities=30% Similarity=0.607 Sum_probs=48.8
Q ss_pred cccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHH
Q psy8844 79 KFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGER 131 (353)
Q Consensus 79 ~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~ 131 (353)
+|.||+||..+|+|||||||.+|.|..||++..+++++||..+++.-+.+|.-
T Consensus 269 TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSG 321 (654)
T KOG1419|consen 269 TYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSG 321 (654)
T ss_pred hHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccch
Confidence 59999999999999999999999999999999999999999998877666543
No 19
>KOG1545|consensus
Probab=98.39 E-value=1.6e-07 Score=91.49 Aligned_cols=58 Identities=28% Similarity=0.513 Sum_probs=47.0
Q ss_pred cccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHHHHH
Q psy8844 79 KFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLS 136 (353)
Q Consensus 79 ~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~~~ 136 (353)
+..+||||+.+|||||||||.+|.|..||+.-..-++.|+--.++-+..+.+-++.++
T Consensus 393 SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFY 450 (507)
T KOG1545|consen 393 SIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 450 (507)
T ss_pred cCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEeccccee
Confidence 5899999999999999999999999999999999999997655554444444444443
No 20
>KOG0498|consensus
Probab=98.25 E-value=8.4e-07 Score=94.52 Aligned_cols=59 Identities=29% Similarity=0.602 Sum_probs=55.9
Q ss_pred cccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHHHHHH
Q psy8844 79 KFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLSS 137 (353)
Q Consensus 79 ~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~~~~ 137 (353)
.|..|+||+++++||+|||+.+|.+..-++|+|+++++|+.+++++++++...+++..+
T Consensus 294 kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~ts 352 (727)
T KOG0498|consen 294 KYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTS 352 (727)
T ss_pred HHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhH
Confidence 49999999999999999999999999999999999999999999999999999887654
No 21
>KOG0501|consensus
Probab=98.24 E-value=1.4e-06 Score=89.33 Aligned_cols=58 Identities=26% Similarity=0.573 Sum_probs=52.9
Q ss_pred cccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHHHHH
Q psy8844 79 KFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLS 136 (353)
Q Consensus 79 ~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~~~ 136 (353)
-|.+|+||+++.+||||||+++|.|+..|+|.++.+++|-.+++.+|+.+...++...
T Consensus 423 ~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~ 480 (971)
T KOG0501|consen 423 AYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMT 480 (971)
T ss_pred eehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999988877666544
No 22
>KOG0498|consensus
Probab=98.16 E-value=2e-06 Score=91.72 Aligned_cols=57 Identities=26% Similarity=0.491 Sum_probs=50.1
Q ss_pred ccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8844 186 YFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMN 250 (353)
Q Consensus 186 ~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~~~~ 250 (353)
|+.|+||++.||||+||||..|. ++.-++|+++++++|+.+.|++++.++..+....
T Consensus 295 Y~~aLyw~l~tLstvG~g~~~s~--------~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~t 351 (727)
T KOG0498|consen 295 YVYALYWGLSTLSTVGYGLVHAN--------NMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLT 351 (727)
T ss_pred HHHHHHHHhhHhhhccCCccCCC--------CcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHh
Confidence 45689999999999999999984 3567899999999999999999999988776544
No 23
>KOG3193|consensus
Probab=98.16 E-value=5.4e-06 Score=84.47 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=50.1
Q ss_pred CCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy8844 184 WTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMNTEDERRDEAEALQ 263 (353)
Q Consensus 184 ~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~~~~~~~~~r~~~~~~~ 263 (353)
.+.+.++||..+|++||||||.+|. -....+..+++|.+.++++- ..+-...+.++..++...+...| .
T Consensus 216 i~lf~s~y~v~vtfstvgygd~~pd--------~w~sql~~vi~icval~~ip--~q~~~l~~tw~erqk~g~~~ss~-~ 284 (1087)
T KOG3193|consen 216 IDLFTSFYFVMVTFSTVGYGDWYPD--------YWASQLCVVILICVALGLIP--KQLDELGQTWSERQKSGTDFSSW-N 284 (1087)
T ss_pred eeeeeeEEEEEEEEeeccccccccc--------cchhhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhcCCCcccc-c
Confidence 6889999999999999999999993 23345555555544444443 33333444443322222222222 4
Q ss_pred hhCCCEEEeccc
Q psy8844 264 AAQGAVRLEGDV 275 (353)
Q Consensus 264 ~l~~hviv~g~~ 275 (353)
..+.||++|-..
T Consensus 285 ~~e~hvvv~~tt 296 (1087)
T KOG3193|consen 285 GVESHVVVTITT 296 (1087)
T ss_pred cccceEEEEEee
Confidence 478899998763
No 24
>KOG3684|consensus
Probab=98.03 E-value=3.6e-06 Score=84.28 Aligned_cols=88 Identities=20% Similarity=0.381 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHhhcCCCCCCCCcccccccee
Q psy8844 7 RTLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSFYY 86 (353)
Q Consensus 7 r~l~L~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~~n~s~~~~~~~e~~~~~~~~~~~~~~W~~~~a~yf 86 (353)
+...|.+.++.+.++-++++..-|+.++.+. ..=+|+++.|+
T Consensus 253 Pg~vL~vftl~~Wii~sW~~~~cER~~~~~~--------------------------------------~~~~~~nsmWl 294 (489)
T KOG3684|consen 253 PGTVLLVFTLSLWIIASWMLRQCERYHDSQD--------------------------------------VTINYLNSMWL 294 (489)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcchh--------------------------------------hHHHHHhhHHH
Confidence 3557888889999999999999996654332 12258899999
Q ss_pred eEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHH
Q psy8844 87 ATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERL 132 (353)
Q Consensus 87 ~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l 132 (353)
..+|+-+|||||++|.|..||..|++=+++|....+++++.+...+
T Consensus 295 i~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL 340 (489)
T KOG3684|consen 295 IAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL 340 (489)
T ss_pred HHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888877544
No 25
>KOG4390|consensus
Probab=98.01 E-value=1.9e-06 Score=84.77 Aligned_cols=47 Identities=30% Similarity=0.649 Sum_probs=42.2
Q ss_pred cccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHH
Q psy8844 79 KFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMF 125 (353)
Q Consensus 79 ~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~ 125 (353)
+...||||+++|+||.||||.+|.|.+||+|-.+-.+-|+.+.++-+
T Consensus 356 sIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPV 402 (632)
T KOG4390|consen 356 SIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPV 402 (632)
T ss_pred cCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccc
Confidence 58899999999999999999999999999999999999976665543
No 26
>KOG3684|consensus
Probab=97.65 E-value=8e-05 Score=74.83 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhhHHHhhhcC--------CCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHH
Q psy8844 164 TTLSSLTIAVGAAAFSRYEG--------WTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIV 235 (353)
Q Consensus 164 ~~l~~~~i~~ga~~f~~~E~--------~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~ 235 (353)
.++.+.++++.++++...|. -+|.++.|+..+|+-+|||||+||.+ -.||.++++--++|....
T Consensus 258 ~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~T--------ycGr~v~l~tGivGa~~s 329 (489)
T KOG3684|consen 258 LVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNT--------YCGRGVALLTGIVGAGCS 329 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCc--------cccchHHHHhhhhhhhHH
Confidence 33444567778888887762 34899999999999999999999954 568888988889999999
Q ss_pred HHHHHHHHHHHH
Q psy8844 236 AASLNLLVLRFV 247 (353)
Q Consensus 236 a~~~~~i~~~~~ 247 (353)
+++++.+.-.+.
T Consensus 330 allvAvisRKLe 341 (489)
T KOG3684|consen 330 SLLVAVIARKLE 341 (489)
T ss_pred HHHHHHHHHHHH
Confidence 888887755443
No 27
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.62 E-value=8.1e-05 Score=73.43 Aligned_cols=59 Identities=25% Similarity=0.343 Sum_probs=46.0
Q ss_pred CCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8844 184 WTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVT 248 (353)
Q Consensus 184 ~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~~ 248 (353)
-+|.+||+|++-|+||||||...|.. .-|...++..+-.++|+.+.+.+++++..+|..
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~------~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~sr 141 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTP------ECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSR 141 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-C------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cchhhheeEEEEEEEEeccCCcccCC------CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 48999999999999999999954321 335666777888999999999999999999964
No 28
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.10 E-value=0.00019 Score=70.90 Aligned_cols=54 Identities=28% Similarity=0.476 Sum_probs=42.4
Q ss_pred cccccceeeEEEEEeccccc--cCcCCCCchhhhhhhhhccchhhHHHHHHHHHHH
Q psy8844 79 KFAGSFYYATTVLTTIGYGH--STPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERL 132 (353)
Q Consensus 79 ~~~~a~yf~~~t~TTIGYG~--i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l 132 (353)
+|.+||+|++.|+||||||. +.|..+.+-++..+=+++|+-+.+++++.+-.++
T Consensus 84 ~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~ 139 (336)
T PF01007_consen 84 SFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARF 139 (336)
T ss_dssp THHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999998 6788889999999999999888887776654443
No 29
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=96.90 E-value=0.0046 Score=64.52 Aligned_cols=139 Identities=19% Similarity=0.197 Sum_probs=87.2
Q ss_pred ccccceeeEEEEEecc-ccccC-cCCCCchhhhhhhhhcc--chh------hH-HHHHHHHHHHHHHHHHHHH-hhhhcc
Q psy8844 80 FAGSFYYATTVLTTIG-YGHST-PNTIGGKLFTMFYAMVG--IPL------GL-VMFQSIGERLNKLSSVVIR-KAKRLS 147 (353)
Q Consensus 80 ~~~a~yf~~~t~TTIG-YG~i~-P~T~~gr~f~~~y~l~G--Ipl------~~-~~~~~i~~~l~~~~~~i~~-~~~~~~ 147 (353)
..+|+|-+.|+-||-| +..+. -.|+.|..+.++.+++| .|- .. .++.. +.-+...+.+ |....+
T Consensus 329 ~~salF~svTtrtTaG~fNsm~dsltp~~~lv~m~lMfIG~~~pGGtGgGl~~~~tfaI----L~vfi~glmvGrtpe~~ 404 (559)
T PRK05482 329 AASALFAVVTTAASTGAVNAMHDSLTPLGGLVPLLNMQLGEVIFGGVGSGLYGMLVFVI----LAVFIAGLMVGRTPEYL 404 (559)
T ss_pred HHHHHHHHHHhhhhcchHHHHHHhhccHHHHHHHHHHHhCCCCCccchHhHHHHHHHHH----HHHHHHhHccCCCCeEE
Confidence 6788999999988888 65553 34788999999999997 331 11 11111 1112222222 222222
Q ss_pred cccccccchhHHHHHHHHHHHHHHHhhhHHHh-h-------hcC--CCccchhheeeeecccccc--CccccccccCccC
Q psy8844 148 GCTEIEATEINLICVVTTLSSLTIAVGAAAFS-R-------YEG--WTYFDSVYYCFITLTTIGF--GDMVALQKDNALD 215 (353)
Q Consensus 148 ~~~~~~~~~~~l~l~~~~l~~~~i~~ga~~f~-~-------~E~--~s~~da~Yf~~iTlTTVGf--GDivP~~~~~~~~ 215 (353)
.|+.+.++.+....+.++..+++++++++.. . .|+ ..|.|-+|=..-.+.|+|. |++.+
T Consensus 405 -gRkI~~~eik~A~~vilv~~~lVl~~taial~~~~~~~~~~n~g~hgfseiLyE~~SA~~tnGss~gGLt~-------- 475 (559)
T PRK05482 405 -GKKIEAREMKLAALAILVHPLLVLVGTALALATPAGRAGISNPGPHGFSEVLYAYTSAAANNGSAFAGLGA-------- 475 (559)
T ss_pred -ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCHHHHHHHHHhhccccccccccCCC--------
Confidence 3556677776655555444455555553332 2 332 6888999988888899885 66765
Q ss_pred CCCcchhhhHHHHHHH
Q psy8844 216 TKPEYVIFALIFILFG 231 (353)
Q Consensus 216 ~~~~~~~f~~i~il~G 231 (353)
+++.+++...+.|++|
T Consensus 476 ~t~~~niil~~~M~iG 491 (559)
T PRK05482 476 NTPFWNLTLGIAMLLG 491 (559)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3588999999999988
No 30
>KOG0501|consensus
Probab=96.76 E-value=0.0018 Score=67.06 Aligned_cols=57 Identities=23% Similarity=0.500 Sum_probs=47.8
Q ss_pred ccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8844 186 YFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMN 250 (353)
Q Consensus 186 ~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~~~~ 250 (353)
|..|+||+...|||||||.+.|.+ ..-++|++..+++|-.+-+..++-++.-+-++.
T Consensus 424 YissLYfTMt~mttvGFGNiA~~T--------D~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~ 480 (971)
T KOG0501|consen 424 YISSLYFTMTCMTTVGFGNIAPNT--------DNEKIFGVCMMIIGALLYATIFGHVTTIIQQMT 480 (971)
T ss_pred ehhhhhhhhhhhhcccccccCCCc--------cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 678899999999999999999955 456899999999999888888887766554443
No 31
>KOG3193|consensus
Probab=95.95 E-value=0.019 Score=59.37 Aligned_cols=54 Identities=22% Similarity=0.445 Sum_probs=41.0
Q ss_pred CCCccccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHH
Q psy8844 75 GQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSI 128 (353)
Q Consensus 75 ~~~W~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i 128 (353)
+...+...++||.++|++|+||||.+|.-.+.++..++.+-+.+.+.---+..+
T Consensus 213 ~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l 266 (1087)
T KOG3193|consen 213 GKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDEL 266 (1087)
T ss_pred CceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHH
Confidence 346789999999999999999999999999999877766554444433333333
No 32
>PRK10750 potassium transporter; Provisional
Probab=95.85 E-value=0.12 Score=53.51 Aligned_cols=154 Identities=17% Similarity=0.159 Sum_probs=82.4
Q ss_pred cccccceeeEEEEEecccccc--CcCCCCchhhhhhhhhccchhh--HHHHH--HHHHHHHHHHHHHHHhhh-h-----c
Q psy8844 79 KFAGSFYYATTVLTTIGYGHS--TPNTIGGKLFTMFYAMVGIPLG--LVMFQ--SIGERLNKLSSVVIRKAK-R-----L 146 (353)
Q Consensus 79 ~~~~a~yf~~~t~TTIGYG~i--~P~T~~gr~f~~~y~l~GIpl~--~~~~~--~i~~~l~~~~~~i~~~~~-~-----~ 146 (353)
.+.+|+|.+.+.+||.||... .--++..+.+.++.+++|=... .-=+. .+.-.+....+.+.+... + .
T Consensus 304 ~l~~s~Fq~vS~~tTtGF~t~d~~~w~~~~~~ll~~lMfIGG~~GSTaGGIKv~R~~vl~~~~~~~l~~~~~P~~V~~v~ 383 (483)
T PRK10750 304 TLNQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGCAGSTGGGLKVIRILLLFKQGNRELKRLVHPNAVYSIK 383 (483)
T ss_pred HHHHHHHeeeecccCCCCCCCChhhccHHHHHHHHHHHHHcCCcccCcccHHHHHHHHHHHHHHHHHHHhcCCCceeeee
Confidence 367888888888999999743 3334456777777777773221 10000 000011111111211111 0 0
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHhhhHHHhhhcCCCccchhheeeeecccccc--CccccccccCccCCCCcchhhh
Q psy8844 147 SGCTEIEATEINLICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGF--GDMVALQKDNALDTKPEYVIFA 224 (353)
Q Consensus 147 ~~~~~~~~~~~~l~l~~~~l~~~~i~~ga~~f~~~E~~s~~da~Yf~~iTlTTVGf--GDivP~~~~~~~~~~~~~~~f~ 224 (353)
...|+.+.+..+-...+.++..+.+.+++.+. ..++.+..+|+-=+.-++++||. |.. +. +...-++..|++.
T Consensus 384 ~~gr~i~~~~v~~v~~~~~ly~~~~~~~~~~l-~~~g~~~~sA~~~v~s~l~nvG~s~G~~-~~---~f~~l~~~~K~il 458 (483)
T PRK10750 384 LGNRALPERILEAVWGFFSAYALVFIVSMLAI-IATGVDDFSAFASVVATLNNLGPGLGVV-AD---NFTSMNPVAKWIL 458 (483)
T ss_pred ECCEECCHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhcCCCCCchhh-cc---ccccCCHHHHHHH
Confidence 12233333334333444444444445555555 56788899999877788888886 433 11 1111346788988
Q ss_pred HHHHHHH-HHHHHH
Q psy8844 225 LIFILFG-LAIVAA 237 (353)
Q Consensus 225 ~i~il~G-l~~~a~ 237 (353)
.+.|++| +.+++.
T Consensus 459 ~~~MllGRLEi~tv 472 (483)
T PRK10750 459 IANMLFGRLEVFTL 472 (483)
T ss_pred HHHHHHHHHHHHHH
Confidence 8999988 555544
No 33
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=95.72 E-value=0.03 Score=56.27 Aligned_cols=139 Identities=14% Similarity=0.216 Sum_probs=74.7
Q ss_pred ccccccceeeEEEEEecccc--ccCcCCCCchhhhhhhhhccchh-----------hHHHHHHHHHHHHHHHHHHHHhhh
Q psy8844 78 WKFAGSFYYATTVLTTIGYG--HSTPNTIGGKLFTMFYAMVGIPL-----------GLVMFQSIGERLNKLSSVVIRKAK 144 (353)
Q Consensus 78 W~~~~a~yf~~~t~TTIGYG--~i~P~T~~gr~f~~~y~l~GIpl-----------~~~~~~~i~~~l~~~~~~i~~~~~ 144 (353)
..+.++.++..++++|.||. |..--++.++++.++.+++|-.- .++.+..+ ...+|+..
T Consensus 230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~gSTaGGiK~~r~~vl~~~~--------~~~~~~~~ 301 (390)
T TIGR00933 230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCSGSTAGGIKTTTFAILLKQV--------YREIRRGI 301 (390)
T ss_pred HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCCcccCCchHHHHHHHHHHHH--------HHHHHccC
Confidence 45788999999999999986 44555678899999998888422 11111111 11112111
Q ss_pred --hcccccccccchhHHHHHHHHHHHHHHHhhhHHHhhhc----CCCccchhheeeeeccccccCcc--ccccccCccCC
Q psy8844 145 --RLSGCTEIEATEINLICVVTTLSSLTIAVGAAAFSRYE----GWTYFDSVYYCFITLTTIGFGDM--VALQKDNALDT 216 (353)
Q Consensus 145 --~~~~~~~~~~~~~~l~l~~~~l~~~~i~~ga~~f~~~E----~~s~~da~Yf~~iTlTTVGfGDi--vP~~~~~~~~~ 216 (353)
+....++...+..+--....++..+++.++..+....| +.++.|+++=+.-.++|||.+== .|. -
T Consensus 302 ~~~~v~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fe~~Sa~~tvGls~g~~~~~-------l 374 (390)
T TIGR00933 302 HPRIIFSRRIGGKTIDKAILISVWSFFLVFALIFLLSILELISSGYDFLTSLFEVVSAFGTVGLSVGLTTAN-------L 374 (390)
T ss_pred CCceEEeEEECCeehHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHhcCcCCCCCCCccc-------C
Confidence 11111222222111111111111111122222222233 78999999999999999997432 221 2
Q ss_pred CCcchhhhHHHHHHH
Q psy8844 217 KPEYVIFALIFILFG 231 (353)
Q Consensus 217 ~~~~~~f~~i~il~G 231 (353)
.+.+|+..++.|++|
T Consensus 375 ~~~~k~il~~~M~~G 389 (390)
T TIGR00933 375 PDAGKLILIVLMFIG 389 (390)
T ss_pred CHHHHHHHHHHHHcC
Confidence 356777766666655
No 34
>KOG0500|consensus
Probab=95.54 E-value=0.017 Score=59.07 Aligned_cols=56 Identities=23% Similarity=0.428 Sum_probs=50.8
Q ss_pred ccccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHHH
Q psy8844 78 WKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNK 134 (353)
Q Consensus 78 W~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~ 134 (353)
-.|.-|+|||.-|+|||| --..|.|+.--+|.++=-++|+-+++.+++++|+.+..
T Consensus 182 ReY~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtn 237 (536)
T KOG0500|consen 182 REYLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTN 237 (536)
T ss_pred HHHHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHh
Confidence 458899999999999999 45689999999999999999999999999999998764
No 35
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=95.00 E-value=0.048 Score=47.47 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=38.5
Q ss_pred CCccchhheeeeeccccccCccccccccCccCCCCcchhhh-HHHHHHHHHHHHHHHHH
Q psy8844 184 WTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFA-LIFILFGLAIVAASLNL 241 (353)
Q Consensus 184 ~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~-~i~il~Gl~~~a~~~~~ 241 (353)
-+|..|+|+.+.++||.|+||..|...+ ..+....++. .+.++.++.+++++++.
T Consensus 144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~l~nlliav 199 (200)
T PF00520_consen 144 DSFGESLYWLFQTMTGEGWGDVMPSCMS---ARSWLAVIFFISFIIIVSILLLNLLIAV 199 (200)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCcccccccccc---ccchhHhHHhhhhhhhHHHHHHHHHHhc
Confidence 3688999999999999999999985210 1234556666 45555566777776654
No 36
>KOG3827|consensus
Probab=94.94 E-value=0.078 Score=52.78 Aligned_cols=46 Identities=22% Similarity=0.462 Sum_probs=30.5
Q ss_pred cccccceeeEEEEEeccccccCcCCCC--chhhhhhhhhccchhhHHH
Q psy8844 79 KFAGSFYYATTVLTTIGYGHSTPNTIG--GKLFTMFYAMVGIPLGLVM 124 (353)
Q Consensus 79 ~~~~a~yf~~~t~TTIGYG~i~P~T~~--gr~f~~~y~l~GIpl~~~~ 124 (353)
+|.+||.|++.|-||||||.-.+.... +-+..++=++.|..+=+++
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm 159 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFM 159 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999987766543 3333333344444433333
No 37
>KOG0500|consensus
Probab=94.66 E-value=0.16 Score=52.04 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=41.0
Q ss_pred chhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8844 188 DSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMNTE 252 (353)
Q Consensus 188 da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~~~~~~ 252 (353)
-|+|||..|+||+| |..|- .+..--+|.++=.++|+.++|..++-+.+....++..
T Consensus 186 ~S~YWStLTlTTiG--e~P~P-------~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~ 241 (536)
T KOG0500|consen 186 YSLYWSTLTLTTIG--EQPPP-------VTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAA 241 (536)
T ss_pred HHHHHHhhhhhhcc--CCCCC-------CcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHH
Confidence 36999999999998 43321 1222336888888999999999998887777666543
No 38
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=93.81 E-value=0.12 Score=51.89 Aligned_cols=129 Identities=15% Similarity=0.172 Sum_probs=60.9
Q ss_pred CccccccceeeEEEEEeccccccCc---CCCCchhhhhhhhhcc-chh--hHHH-HHHHHHHHHHHHHHHHHhhhhcccc
Q psy8844 77 QWKFAGSFYYATTVLTTIGYGHSTP---NTIGGKLFTMFYAMVG-IPL--GLVM-FQSIGERLNKLSSVVIRKAKRLSGC 149 (353)
Q Consensus 77 ~W~~~~a~yf~~~t~TTIGYG~i~P---~T~~gr~f~~~y~l~G-Ipl--~~~~-~~~i~~~l~~~~~~i~~~~~~~~~~ 149 (353)
..+|.||+|-++.-+||.|.--..+ .+..+++.-.+...+| +.+ .... +..++.++.-..+..........+.
T Consensus 13 ~~s~~dA~FeavSa~ttTGltv~~~~~~~~~~~~~~r~~l~~iGGlG~~v~~~~~l~~~g~~~~~~~~l~~~e~~~~~~~ 92 (390)
T TIGR00933 13 PLSFIDALFTATSAVTTTGLTVLDTLESLPKAGLFLRSLLQQIGGLGFMVLAVAILILLGKKISLGARLYLAEALGPLSD 92 (390)
T ss_pred CCCHHHHHHhhHhhcccCCCeEccChhhcCHhHHHHHHHHHHHcChHHHHHHHHHHHHHccccCHHHHHHHHHhCCCCCc
Confidence 4689999999999999999654433 3455665555554444 332 2222 1222221111111111111110011
Q ss_pred cccccchhHHHHHHHHHHHHHHHhhhHHHhhhcCCCccchhheeeeeccccccCcc
Q psy8844 150 TEIEATEINLICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDM 205 (353)
Q Consensus 150 ~~~~~~~~~l~l~~~~l~~~~i~~ga~~f~~~E~~s~~da~Yf~~iTlTTVGfGDi 205 (353)
.+...+-......+..+..+..++++..+...+..+++||++.++.+++|=||.=.
T Consensus 93 ~~~~~~i~~~~~~~~~iy~~lt~l~~~~~~~~g~~~~~~Aif~avSa~~taGFs~~ 148 (390)
T TIGR00933 93 DKLLPLIKNTAKFIFVIYLLGTILLAVRFVLTGWMPLFDAIFHSISAFNNGGFSTH 148 (390)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcCCcCCC
Confidence 11111111111111111122223344444332226889999999999999998543
No 39
>KOG3827|consensus
Probab=92.98 E-value=0.46 Score=47.45 Aligned_cols=56 Identities=20% Similarity=0.375 Sum_probs=41.9
Q ss_pred CccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8844 185 TYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRF 246 (353)
Q Consensus 185 s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~ 246 (353)
+|.-||-|++-|=||||||--.+..+ =|...+..++-.+.|+.+=+..++.+....
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTee------CP~aI~ll~~Q~I~g~ii~afm~G~i~aKi 167 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEE------CPEAIFLLVLQSILGVIINAFMVGAIFAKI 167 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCcc------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888999999999999999887542 355666666666777777777666665554
No 40
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=92.21 E-value=0.039 Score=54.63 Aligned_cols=152 Identities=13% Similarity=0.140 Sum_probs=66.3
Q ss_pred ccccccceeeEEEEEecccccc--CcCCCCchhhhhhhhhccchhhH-------HHHHHHHHHHHHHHHHHHHhhhhc--
Q psy8844 78 WKFAGSFYYATTVLTTIGYGHS--TPNTIGGKLFTMFYAMVGIPLGL-------VMFQSIGERLNKLSSVVIRKAKRL-- 146 (353)
Q Consensus 78 W~~~~a~yf~~~t~TTIGYG~i--~P~T~~gr~f~~~y~l~GIpl~~-------~~~~~i~~~l~~~~~~i~~~~~~~-- 146 (353)
+....+.+|...+.+|-||... .--++..+++.++.+++|=.... .-+..+...+....+...+.....
T Consensus 175 ~~~~~~~f~~~s~~rTtGF~t~d~~~~~~~~~~l~~~lM~IGg~~gSTaGGiK~~r~~il~~~~~~~~~~~~p~~~~~~~ 254 (354)
T PF02386_consen 175 GSKRLSAFFQVSSLRTTGFSTVDISQWSPFTLLLLIILMFIGGSPGSTAGGIKITRFAILLKSIREIKRLIHPGAVSPVR 254 (354)
T ss_dssp HHHHHHHHHHHHTTTT----S---SS--THHHHHHHHHTTS-S-TTSS--SS-HHHHHHHHHHHHHHHHHH-SSS-----
T ss_pred HHHHHHHHHHHhhcCCcccCccChhhCCHHHHHHHHHHHHhcCccccccCCcceehhhHHHhhHHHHHHHhcCCCcccee
Confidence 3455677778788899999744 33456778888888888843211 111111111111111111111111
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHhhhHHHhhhcCCC-ccchhheeeeeccccccCccccccccCccCCCCcchhhhH
Q psy8844 147 SGCTEIEATEINLICVVTTLSSLTIAVGAAAFSRYEGWT-YFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFAL 225 (353)
Q Consensus 147 ~~~~~~~~~~~~l~l~~~~l~~~~i~~ga~~f~~~E~~s-~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~ 225 (353)
++.++.+.+...-...+.++..+++.+++.++...+..+ +.|+++=+.-.++|||.+==.+..+-. .-.+..|++.+
T Consensus 255 ~~~r~i~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfe~~Sa~gtvGls~G~~~~~~s--~~~~~~K~vli 332 (354)
T PF02386_consen 255 FNGRRISEQTVRKAFAFFFLYFIIVFISTLLLSLDGLDFSFFDALFEVISAFGTVGLSLGITTPNLS--FSGPFSKLVLI 332 (354)
T ss_dssp SSS---TTSHHHHHCCHHHHHHHHHHHHHHHHHHHSS-H--HHHHHHHHHHCTT--S--SSS----S--SS-HHHHHHHH
T ss_pred ecceeechhhhhhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCcCCCCCCCCCCcc--chhhHHHHHHH
Confidence 121222222232222233333344455666666555433 689999999999999874322211100 01133788888
Q ss_pred HHHHHH
Q psy8844 226 IFILFG 231 (353)
Q Consensus 226 i~il~G 231 (353)
+.|++|
T Consensus 333 ~~M~~G 338 (354)
T PF02386_consen 333 FLMLLG 338 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888777
No 41
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=91.07 E-value=1.6 Score=45.57 Aligned_cols=151 Identities=17% Similarity=0.162 Sum_probs=80.8
Q ss_pred eeeEEEEEeccccc--cCcCCCCchhhhhhhhhccchhh--HHHHHHHHHH-HHHHHHHHHHh---hh----hccccccc
Q psy8844 85 YYATTVLTTIGYGH--STPNTIGGKLFTMFYAMVGIPLG--LVMFQSIGER-LNKLSSVVIRK---AK----RLSGCTEI 152 (353)
Q Consensus 85 yf~~~t~TTIGYG~--i~P~T~~gr~f~~~y~l~GIpl~--~~~~~~i~~~-l~~~~~~i~~~---~~----~~~~~~~~ 152 (353)
+|+..+-+| ||.. ..--++..+++.++.+++|-.-. +-=+...... +-+..+..+++ .+ .....|+.
T Consensus 313 ~f~tg~trt-gf~~vd~~~~~~~~~~~~~~~MfIGg~~gSTaGGIK~~r~~il~~~~~~~l~~~~~p~~v~~~k~~~r~i 391 (499)
T COG0168 313 IFQTGFTRT-GFNTVDLSQWPPATLVLLMLLMFIGGSPGSTAGGIKTTRFAVLLKALKRELRRLGHPNAVISVKIFGRAI 391 (499)
T ss_pred heecccccC-CCcccchhhcChHHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHHHHHhcCcccceeeEEcCccC
Confidence 333333344 6653 34466788899999998884321 1111111110 11111222221 11 12223334
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhHHHhhhcCCCccchhheeeeeccccccCc--cccccccCccCCCCcchhhhHHHHHH
Q psy8844 153 EATEINLICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGD--MVALQKDNALDTKPEYVIFALIFILF 230 (353)
Q Consensus 153 ~~~~~~l~l~~~~l~~~~i~~ga~~f~~~E~~s~~da~Yf~~iTlTTVGfGD--ivP~~~~~~~~~~~~~~~f~~i~il~ 230 (353)
..++..-.+.+.++..+++++++.+....|.-+++|+++=++-++.|||.|= ..+.+...+ -+|..|+.-++.+++
T Consensus 392 ~~~~i~~~~~~~~l~~~~~~i~~~~l~~~~~~~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~--~~~~~K~vli~~M~~ 469 (499)
T COG0168 392 DEDTIRKALAFFFLYLLILIIGALILILTGYDPFIDALFEVVSAFGTVGLSLGITGDLASNFA--LPPLAKLVLIALMLI 469 (499)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHhhcCCCCCCCCCCCccccc--cCchHHHHHHHHHHh
Confidence 4444444555555666677777777766654389999999999999999843 332221111 223447777788888
Q ss_pred H-HHHHHHH
Q psy8844 231 G-LAIVAAS 238 (353)
Q Consensus 231 G-l~~~a~~ 238 (353)
| +.++...
T Consensus 470 GRleil~~l 478 (499)
T COG0168 470 GRLEILTVL 478 (499)
T ss_pred hccchhhHH
Confidence 7 5555443
No 42
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=90.41 E-value=0.32 Score=52.89 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHhhcCCCCCCCCc--ccccccee
Q psy8844 9 LSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQW--KFAGSFYY 86 (353)
Q Consensus 9 l~L~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~~n~s~~~~~~~e~~~~~~~~~~~~~~W--~~~~a~yf 86 (353)
..+++.+++.+++|.++|..+|-.+. .-.+-.| .+.+|+|.
T Consensus 585 ~ill~tt~iL~~ig~ilf~lLE~nn~-------------------------------------tl~~lp~g~Ril~aLFQ 627 (800)
T TIGR00934 585 WWLFFTLVGLNAIDLILFIILDWGSS-------------------------------------VVDGLSKGIKVLNGLFQ 627 (800)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCcc-------------------------------------ccccCCHHHHHHHHHHH
Confidence 35667777889999999999993221 0001122 47788888
Q ss_pred eEEEEEecccc--ccCcCCCCchhhhhhhhhccc
Q psy8844 87 ATTVLTTIGYG--HSTPNTIGGKLFTMFYAMVGI 118 (353)
Q Consensus 87 ~~~t~TTIGYG--~i~P~T~~gr~f~~~y~l~GI 118 (353)
++++ -|-||. |+.-.+++.+++.++.+++|.
T Consensus 628 SVst-RTAGFntVdls~Lspatlvl~iiLMyIGa 660 (800)
T TIGR00934 628 SVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSV 660 (800)
T ss_pred hccc-ccccccccchHhcChhHHHHHHHHHHhcc
Confidence 8876 777876 456667889999999999986
No 43
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=89.42 E-value=0.13 Score=44.81 Aligned_cols=48 Identities=19% Similarity=0.359 Sum_probs=37.2
Q ss_pred cccccceeeEEEEEeccccccCcC-----CCCchhhhhhhhhccc-hhhHHHHH
Q psy8844 79 KFAGSFYYATTVLTTIGYGHSTPN-----TIGGKLFTMFYAMVGI-PLGLVMFQ 126 (353)
Q Consensus 79 ~~~~a~yf~~~t~TTIGYG~i~P~-----T~~gr~f~~~y~l~GI-pl~~~~~~ 126 (353)
++..|+|+.+.++||.|+|+..|. +..+.++.+.|.+++. -++.++++
T Consensus 145 ~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nllia 198 (200)
T PF00520_consen 145 SFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIA 198 (200)
T ss_dssp SHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHh
Confidence 589999999999999999999997 7888888866655554 44444443
No 44
>KOG0499|consensus
Probab=86.24 E-value=0.56 Score=49.35 Aligned_cols=54 Identities=20% Similarity=0.461 Sum_probs=48.8
Q ss_pred cccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHH
Q psy8844 79 KFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLN 133 (353)
Q Consensus 79 ~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~ 133 (353)
.|.-.|||+.-|+|||| |...|.|..--+|-.+=.+.|+-++.++++.+-+.+.
T Consensus 403 ~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~ 456 (815)
T KOG0499|consen 403 EYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIG 456 (815)
T ss_pred ceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58899999999999999 9999999988888888889999999999999887765
No 45
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=84.35 E-value=24 Score=36.88 Aligned_cols=158 Identities=13% Similarity=0.079 Sum_probs=70.6
Q ss_pred cccceeeEEEEEeccccccCcCCCCchhhhhhhhhcc-ch---hhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccch
Q psy8844 81 AGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVG-IP---LGLVMFQSIGERLNKLSSVVIRKAKRLSGCTEIEATE 156 (353)
Q Consensus 81 ~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~G-Ip---l~~~~~~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 156 (353)
.++++-+...+||.|.-.........|.+.+.-..+| ++ +..+.+..+.....-..+...+..+......+....-
T Consensus 91 ~~a~fe~lS~~tttg~t~~~g~~~~p~~il~~r~~l~wlGgmgi~vl~~~il~~~~~~~~~l~~~e~~~~~~~~~i~~~i 170 (499)
T COG0168 91 TDALFEGLSGVTTTGATVLFGLDSLPQSILFWRSQLGWLGGMGIIVLAVAILPRLGVGGMRLYRAEARGPTKMGKIRPRI 170 (499)
T ss_pred cceEEeeeceEecCCceEecCCccccHHHHHHHHHHCCCCeehHHHHHHHHHHhcccHHHHHHHHHccCCCccccchHHH
Confidence 6888888999999986555444455566555554443 22 2222222222221111111111111111011111111
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHhhhcCCCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHH
Q psy8844 157 INLICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVA 236 (353)
Q Consensus 157 ~~l~l~~~~l~~~~i~~ga~~f~~~E~~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a 236 (353)
.+....+..+-.+.-.+++.. ....+.+++||++-++.+++|=||- ..+.+- ....+.|.-.+...++|++|=.-+.
T Consensus 171 ~~~~~~~~~iy~~~t~l~~~~-~~~~gm~~~dAi~hs~Sa~~ngGFS-~~~~Si-~~f~~~~~i~~i~~~liI~GgigF~ 247 (499)
T COG0168 171 KNTAKTLWLIYLLLTILLALA-FILAGMPLFDAIFHSMSAFNNGGFS-THDASI-GYFNGSPLINLIITILIILGGIGFP 247 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhccCCHHHHHHHHHHHhhcCCCC-CCcchh-hhcccChhHHHHHHHHHHHhcCChH
Confidence 111111111111111222222 2346678999999999999999985 443211 1112234334455555555533333
Q ss_pred HHHHH
Q psy8844 237 ASLNL 241 (353)
Q Consensus 237 ~~~~~ 241 (353)
....+
T Consensus 248 v~~~~ 252 (499)
T COG0168 248 VHYRL 252 (499)
T ss_pred HHHHH
Confidence 33333
No 46
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=81.04 E-value=0.22 Score=42.04 Aligned_cols=56 Identities=16% Similarity=0.316 Sum_probs=41.1
Q ss_pred CccccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHH
Q psy8844 77 QWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLN 133 (353)
Q Consensus 77 ~W~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~ 133 (353)
.+++.+++++++.+++. +-++..|.+..+|++.+++.++.+.+....-+.+...+.
T Consensus 42 ~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt 97 (148)
T PF00060_consen 42 RFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLT 97 (148)
T ss_dssp HHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45688899999888777 667899999999999999999998888777777776654
No 47
>KOG0499|consensus
Probab=81.02 E-value=1.7 Score=45.84 Aligned_cols=56 Identities=23% Similarity=0.332 Sum_probs=42.8
Q ss_pred cCCCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8844 182 EGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRF 246 (353)
Q Consensus 182 E~~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~ 246 (353)
+|-+|+-+|||+.-|++||| |.-.|. +..-.+|..+-.+.|+.+++.+++-+-..+
T Consensus 400 ~Gn~YiRCyyfa~kt~~tiG-~~P~P~--------~~~E~Vf~~~~w~mGVFvFslliGQmRDvi 455 (815)
T KOG0499|consen 400 EGNEYIRCYYFAVKTLITIG-GLPEPQ--------TLFEIVFQLLNWFMGVFVFSLLIGQMRDVI 455 (815)
T ss_pred CCCceeeehhhHHHHHHHhc-CCCCcc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999 655552 234456777777889999999999875444
No 48
>PRK10750 potassium transporter; Provisional
Probab=73.14 E-value=19 Score=37.50 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=20.7
Q ss_pred hhcCCCccchhheeeeeccccccC
Q psy8844 180 RYEGWTYFDSVYYCFITLTTIGFG 203 (353)
Q Consensus 180 ~~E~~s~~da~Yf~~iTlTTVGfG 203 (353)
...|.+++||+..++.|++|=||-
T Consensus 201 ~~~Gm~~fdAi~ha~saisTgGFs 224 (483)
T PRK10750 201 WFAGMDAFDAIGHSFSTIAIGGFS 224 (483)
T ss_pred HHcCCcHHHHHHHHHHHHhccCcC
Confidence 446899999999999999998873
No 49
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=64.81 E-value=51 Score=25.73 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=23.4
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhcCCChHHHH
Q psy8844 1 MKKQNIRTLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFK 60 (353)
Q Consensus 1 mk~~~vr~l~L~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~~n~s~~~~~ 60 (353)
||++.+-.+.++++.++ +++|.+.|.... |. ++....+++.+.+ +..+..++|.+
T Consensus 1 MKK~kii~iii~li~i~-li~~~~~~~~~~-~~--~k~~~~k~i~~yL-~e~gy~e~~I~ 55 (85)
T PF11337_consen 1 MKKKKIILIIIILIVIS-LIIGIYYFFNGN-PY--QKHKAEKAIDWYL-QEQGYKESDIK 55 (85)
T ss_pred CCchHHHHHHHHHHHHH-HHHHHHHhhcCc-hh--hHHHHHHHHHHHH-HHcCCcHHHhh
Confidence 77755443333333323 455555554332 11 1222233333333 33456666553
No 50
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=62.89 E-value=12 Score=31.37 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=41.6
Q ss_pred CccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8844 185 TYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMN 250 (353)
Q Consensus 185 s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~~~~ 250 (353)
++.+++|+++-+++. +-++..| .....|++...|.++.+.+.+...+.+++.+...+
T Consensus 44 ~~~~~~~~~~~~~~~-q~~~~~~--------~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~ 100 (148)
T PF00060_consen 44 SLSNSFWYTFGTLLQ-QGSSIRP--------RSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK 100 (148)
T ss_dssp HHHHHHHHCCCCCHH-HHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred cHHHHHHHHHHhhcc-ccccccc--------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 467789999888776 5556666 34568999999999999999999999988776543
No 51
>KOG3676|consensus
Probab=57.48 E-value=60 Score=35.71 Aligned_cols=59 Identities=24% Similarity=0.399 Sum_probs=30.8
Q ss_pred Cccchhheeeeec--cccccCccccccccCccCCCCcchh-hhHHHHHHHHHHHHHHHHHHHHHH
Q psy8844 185 TYFDSVYYCFITL--TTIGFGDMVALQKDNALDTKPEYVI-FALIFILFGLAIVAASLNLLVLRF 246 (353)
Q Consensus 185 s~~da~Yf~~iTl--TTVGfGDivP~~~~~~~~~~~~~~~-f~~i~il~Gl~~~a~~~~~i~~~~ 246 (353)
+..|++.-.+.|+ .|||+||.....+.. ....+++ |....++.-+.++-++++.+..-.
T Consensus 586 ~~~ds~~~~~l~lf~ftig~~dl~~~~~~~---~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty 647 (782)
T KOG3676|consen 586 NPYDSFSTFLLTLFEFTIGMGDLEACENTD---YPVLFKILFVAYMILVTILLLNMLIAMMGNTY 647 (782)
T ss_pred ChhhHHHHHHHHHHHHhhhhhhhhhccccc---chHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3466666666666 689999998644211 0112232 223333344555555555554433
No 52
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=46.40 E-value=1.2 Score=44.13 Aligned_cols=39 Identities=10% Similarity=0.242 Sum_probs=22.0
Q ss_pred cccccceeeEEEEEeccccc----cCcCC--CCchhhhhhhhhcc
Q psy8844 79 KFAGSFYYATTVLTTIGYGH----STPNT--IGGKLFTMFYAMVG 117 (353)
Q Consensus 79 ~~~~a~yf~~~t~TTIGYG~----i~P~T--~~gr~f~~~y~l~G 117 (353)
++++|++.++++++|-|+.- +.|-. +.-.+..++.+++|
T Consensus 53 ~~~~aifhs~Sa~~t~GFs~~~~sl~~f~~~~~i~~i~~~lmi~G 97 (354)
T PF02386_consen 53 PLFDAIFHSMSAFSTGGFSPFSDSLAPFNSNPFIEIIIIILMILG 97 (354)
T ss_dssp -SHHHHTTTHHHHTT----SSTTGGGSS---TTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCceecCCceecccccHHHHHHHHHHHHHh
Confidence 58899999999999999742 23333 24455555555554
No 53
>KOG4440|consensus
Probab=46.29 E-value=11 Score=40.42 Aligned_cols=56 Identities=16% Similarity=0.339 Sum_probs=48.1
Q ss_pred CccccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHH
Q psy8844 77 QWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERL 132 (353)
Q Consensus 77 ~W~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l 132 (353)
..++.+|.||+.-++..-|-|.-+|.+...|++-|+|+=+.+.+.+...++++..+
T Consensus 611 alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFL 666 (993)
T KOG4440|consen 611 ALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFL 666 (993)
T ss_pred hcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhe
Confidence 56799999999999999999999999999999999999888777776666665543
No 54
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=44.33 E-value=3e+02 Score=31.93 Aligned_cols=19 Identities=16% Similarity=0.036 Sum_probs=13.5
Q ss_pred eeeecCCCCCCCCCCCCcc
Q psy8844 305 TCTCNCFRRDSDLQLGPTV 323 (353)
Q Consensus 305 sc~c~~~~~~~~~~~~~~~ 323 (353)
++-+|+...+.-+...+|+
T Consensus 273 a~i~Yrv~~~~~i~~GDPv 291 (1094)
T PRK02983 273 AAITYRVEVGVCLASGDPV 291 (1094)
T ss_pred EEEEEEEECCEEEEECCCC
Confidence 5677887777666666766
No 55
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=44.22 E-value=74 Score=23.25 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy8844 228 ILFGLAIVAASLNLLVLRFVTMN 250 (353)
Q Consensus 228 il~Gl~~~a~~~~~i~~~~~~~~ 250 (353)
++++..+++.+++.+........
T Consensus 23 ~il~~f~~G~llg~l~~~~~~~~ 45 (68)
T PF06305_consen 23 LILIAFLLGALLGWLLSLPSRLR 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555544444333
No 56
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=42.72 E-value=32 Score=36.14 Aligned_cols=18 Identities=28% Similarity=0.204 Sum_probs=13.5
Q ss_pred hhCCCEEEecccCCCCCccc
Q psy8844 264 AAQGAVRLEGDVITADGSIL 283 (353)
Q Consensus 264 ~l~~hviv~g~~~~~~g~~~ 283 (353)
.++||++|||+ ++.|+..
T Consensus 415 ~~~~hiiI~G~--G~~G~~l 432 (558)
T PRK10669 415 DICNHALLVGY--GRVGSLL 432 (558)
T ss_pred ccCCCEEEECC--ChHHHHH
Confidence 56899999998 5555544
No 57
>KOG3599|consensus
Probab=41.71 E-value=1.8e+02 Score=32.37 Aligned_cols=26 Identities=8% Similarity=-0.124 Sum_probs=15.8
Q ss_pred CCCCchhhhhhhhhccchhhHHHHHH
Q psy8844 102 NTIGGKLFTMFYAMVGIPLGLVMFQS 127 (353)
Q Consensus 102 ~T~~gr~f~~~y~l~GIpl~~~~~~~ 127 (353)
.+..-++=.+.-.+.|+++++..+..
T Consensus 543 F~~~a~~~~~~~~l~a~lvfl~tiK~ 568 (798)
T KOG3599|consen 543 FTEVAQWNIAARNLLAFLVFLTTIKL 568 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566667777777766544
No 58
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=40.90 E-value=74 Score=33.82 Aligned_cols=40 Identities=20% Similarity=0.115 Sum_probs=33.6
Q ss_pred ccccccceeeEEEEEeccc--cccCcCCCCchhhhhhhhhcc
Q psy8844 78 WKFAGSFYYATTVLTTIGY--GHSTPNTIGGKLFTMFYAMVG 117 (353)
Q Consensus 78 W~~~~a~yf~~~t~TTIGY--G~i~P~T~~gr~f~~~y~l~G 117 (353)
..|.+.+|=......|+|- |.+.+.|+.||+..++-+++|
T Consensus 450 hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iG 491 (559)
T PRK05482 450 HGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLG 491 (559)
T ss_pred CCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHH
Confidence 3677888888888889884 558899999999999999988
No 59
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=39.10 E-value=13 Score=33.61 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=13.2
Q ss_pred CCCcee-eeecCCCC-CCCCCCCC
Q psy8844 300 TTSMCT-CTCNCFRR-DSDLQLGP 321 (353)
Q Consensus 300 ~~s~cs-c~c~~~~~-~~~~~~~~ 321 (353)
+-=+|+ |+||--+- ..++.||.
T Consensus 86 N~vVCTLCSCyP~pvLGlpP~WYk 109 (185)
T TIGR01323 86 NVVVCTLCSCYPWPVLGLPPEWYK 109 (185)
T ss_pred eEEEeccccccCchhcCCCCcccC
Confidence 444788 88885333 45566663
No 60
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=38.71 E-value=41 Score=36.08 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=14.3
Q ss_pred HHhhCCCEEEecccCCCCCccc
Q psy8844 262 LQAAQGAVRLEGDVITADGSIL 283 (353)
Q Consensus 262 ~~~l~~hviv~g~~~~~~g~~~ 283 (353)
+++.++|++|||+ ++.|+..
T Consensus 396 ~~~~~~~vII~G~--Gr~G~~v 415 (621)
T PRK03562 396 IDEQQPRVIIAGF--GRFGQIV 415 (621)
T ss_pred cccccCcEEEEec--ChHHHHH
Confidence 3455899999998 5555544
No 61
>KOG1052|consensus
Probab=38.20 E-value=40 Score=36.00 Aligned_cols=56 Identities=11% Similarity=0.145 Sum_probs=45.7
Q ss_pred CCccccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHH
Q psy8844 76 QQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERL 132 (353)
Q Consensus 76 ~~W~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l 132 (353)
..|+..+++|+++.++..-|-+ ..|.+..+|++..+|.++++.+....-+++...+
T Consensus 378 ~~~~~~~~~~~~~~~~~~q~~~-~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~L 433 (656)
T KOG1052|consen 378 SLFSLLNCLWLTVGSLLQQGSD-EIPRSLSTRLLLGAWWLFVLILISSYTANLTAFL 433 (656)
T ss_pred eEeecccchhhhhHHHhccCCC-ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788888889988888888755 8999999999999999999877666666665544
No 62
>PLN03223 Polycystin cation channel protein; Provisional
Probab=36.58 E-value=1.4e+02 Score=35.33 Aligned_cols=28 Identities=14% Similarity=0.129 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8844 223 FALIFILFGLAIVAASLNLLVLRFVTMN 250 (353)
Q Consensus 223 f~~i~il~Gl~~~a~~~~~i~~~~~~~~ 250 (353)
|..+.+++.+.++-++++++...|-+..
T Consensus 1399 FfSFILLV~FILLNMFIAII~DSFsEVK 1426 (1634)
T PLN03223 1399 FYSYNIFVFMILFNFLLAIICDAFGEVK 1426 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455677888888888888887654
No 63
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.16 E-value=87 Score=27.59 Aligned_cols=38 Identities=11% Similarity=0.003 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q psy8844 8 TLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIE 45 (353)
Q Consensus 8 ~l~L~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~ 45 (353)
++..++.+++.++.++.+|+..+.|.+..+.+.++...
T Consensus 9 i~ii~viflai~~s~~~~~~~s~~P~~~~~~qA~~~a~ 46 (161)
T COG5353 9 IIIILVIFLAIILSIALFFWKSMKPYHEAEEQAIDLAT 46 (161)
T ss_pred ehhHHHHHHHHHHHHHHHHhHhcCccchhHHHHHHHHh
Confidence 33444555566778999999999998776665555443
No 64
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=25.82 E-value=62 Score=35.82 Aligned_cols=72 Identities=14% Similarity=0.246 Sum_probs=45.6
Q ss_pred HHhhhHHHhh--hcCCCccchhheeeeecccccc-----CccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q psy8844 171 IAVGAAAFSR--YEGWTYFDSVYYCFITLTTIGF-----GDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLV 243 (353)
Q Consensus 171 i~~ga~~f~~--~E~~s~~da~Yf~~iTlTTVGf-----GDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~ 243 (353)
.++|+.++.. ..+..|+||++++.-+.|-=|. .|... -.-.++.++.++.|-.++..++.++-
T Consensus 57 ~~i~si~ly~~~~~~~~yiDalF~a~~a~tq~GLntVd~n~l~~----------~qq~~l~~~~~~~~pI~i~~~~~f~R 126 (800)
T TIGR00934 57 TIIASILLYPSTVKNPAYIDALFLAAGALTQGGLNTVDMNDLSL----------YQQIVLYILMLLTTPIFVHSCLAFVR 126 (800)
T ss_pred HHHHHHhccccCCCChhHHHHHHHHhhhhhhcCCceeeHHhcch----------hHHHHHHHHHHcCCcEEEeccHHHHH
Confidence 3556655554 3458999999999766554443 33332 11234455556667777888888888
Q ss_pred HHHHhhhhh
Q psy8844 244 LRFVTMNTE 252 (353)
Q Consensus 244 ~~~~~~~~~ 252 (353)
.+++|+..+
T Consensus 127 lywFek~F~ 135 (800)
T TIGR00934 127 LYWFERYFD 135 (800)
T ss_pred HHHHHHHhh
Confidence 888877654
No 65
>KOG1052|consensus
Probab=25.28 E-value=1.5e+02 Score=31.65 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=35.9
Q ss_pred ccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8844 186 YFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFV 247 (353)
Q Consensus 186 ~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~ 247 (353)
...++|+++.++..-|-+ ..| .....|++..+|.++++.+.+.-++.+++.+.
T Consensus 382 ~~~~~~~~~~~~~~q~~~-~~p--------~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt 434 (656)
T KOG1052|consen 382 LLNCLWLTVGSLLQQGSD-EIP--------RSLSTRLLLGAWWLFVLILISSYTANLTAFLT 434 (656)
T ss_pred cccchhhhhHHHhccCCC-ccc--------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455555555555533 555 33567899999999999988888887766655
No 66
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=24.54 E-value=2.6e+02 Score=21.66 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=23.9
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8844 216 TKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMN 250 (353)
Q Consensus 216 ~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~~~~ 250 (353)
..|.+.+-++++++.=+.+++.+++.=...-++.+
T Consensus 17 kdP~~Fl~~vll~LtPlfiisa~lSwkLaK~ie~~ 51 (74)
T PF15086_consen 17 KDPYEFLTTVLLILTPLFIISAVLSWKLAKAIEKE 51 (74)
T ss_pred cChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34777777777888888888877766555555443
No 67
>KOG3491|consensus
Probab=24.21 E-value=78 Score=23.44 Aligned_cols=20 Identities=15% Similarity=0.602 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy8844 11 LIVCTFTYLLIGASVFDALE 30 (353)
Q Consensus 11 L~v~~~~YlliGA~vF~~lE 30 (353)
.++.++.+.++|.++|+.+-
T Consensus 40 wLlglFvFVVcGSa~FqIIr 59 (65)
T KOG3491|consen 40 WLLGLFVFVVCGSALFQIIR 59 (65)
T ss_pred HHHHHHHHHhhcHHHHHHHH
Confidence 45667889999999999875
No 68
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=23.76 E-value=1.8e+02 Score=24.48 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8844 223 FALIFILFGLAIVAASLNLLVLRFVT 248 (353)
Q Consensus 223 f~~i~il~Gl~~~a~~~~~i~~~~~~ 248 (353)
|+++-+++-+++++++..+.+..+..
T Consensus 3 FTLiEllivlaIigil~~i~~p~~~~ 28 (134)
T TIGR01710 3 FTLLEIMVVLVILGLLAALVAPKLFS 28 (134)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777766666654
No 69
>KOG1053|consensus
Probab=22.86 E-value=3.9e+02 Score=30.41 Aligned_cols=55 Identities=15% Similarity=0.297 Sum_probs=39.4
Q ss_pred CccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8844 185 TYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFV 247 (353)
Q Consensus 185 s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~ 247 (353)
++..|+|-+- ..=||..||++++ .-.-.|+...+|.+|++.+++.-++.++...+
T Consensus 609 tigkaiwllw----aLvFnnsVpv~nP----KgtTskiMv~VWAfFavifLAsYTANLAAfMI 663 (1258)
T KOG1053|consen 609 TIGKAIWLLW----ALVFNNSVPVENP----KGTTSKIMVLVWAFFAVIFLASYTANLAAFMI 663 (1258)
T ss_pred ehhhHHHHHH----HHHhCCCcCCCCC----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555432 1228999998753 23457999999999999999998888876655
No 70
>KOG2302|consensus
Probab=22.55 E-value=1.8e+02 Score=33.50 Aligned_cols=33 Identities=12% Similarity=0.345 Sum_probs=22.5
Q ss_pred CCCcchh-hhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8844 216 TKPEYVI-FALIFILFGLAIVAASLNLLVLRFVT 248 (353)
Q Consensus 216 ~~~~~~~-f~~i~il~Gl~~~a~~~~~i~~~~~~ 248 (353)
++|+..+ |.+++.++...++.++.+.++..|..
T Consensus 1357 hnpwmllYfIsfllIvsffVlnmfVgvvvenfhK 1390 (1956)
T KOG2302|consen 1357 HNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHK 1390 (1956)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4465433 45555666777888888888888874
No 71
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=21.92 E-value=41 Score=35.93 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=13.8
Q ss_pred HhhCCCEEEecccCCCCCccc
Q psy8844 263 QAAQGAVRLEGDVITADGSIL 283 (353)
Q Consensus 263 ~~l~~hviv~g~~~~~~g~~~ 283 (353)
++.++|++|||+ ++.|+..
T Consensus 397 ~~~~~~vII~G~--Gr~G~~v 415 (601)
T PRK03659 397 EDDKPQVIIVGF--GRFGQVI 415 (601)
T ss_pred ccccCCEEEecC--chHHHHH
Confidence 356899999998 5555543
Done!