Query psy8844
Match_columns 353
No_of_seqs 358 out of 2859
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 20:35:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8844.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8844hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3um7_A Potassium channel subfa 100.0 1.5E-46 5.2E-51 361.1 13.6 241 7-249 31-286 (309)
2 3ukm_A Potassium channel subfa 100.0 7.8E-47 2.7E-51 358.4 10.2 248 3-251 8-266 (280)
3 2k1e_A Water soluble analogue 99.7 3.7E-17 1.3E-21 132.9 7.0 78 165-250 13-97 (103)
4 2q67_A Potassium channel prote 99.7 8.7E-17 3E-21 133.2 7.2 74 166-247 30-103 (114)
5 3ldc_A Calcium-gated potassium 99.6 1.1E-16 3.8E-21 124.9 5.9 71 168-246 11-81 (82)
6 3ldc_A Calcium-gated potassium 99.6 3.2E-17 1.1E-21 128.0 2.6 80 7-132 2-81 (82)
7 3ouf_A Potassium channel prote 99.6 1.9E-16 6.4E-21 127.5 6.5 77 163-247 10-86 (97)
8 3eff_K Voltage-gated potassium 99.6 1.8E-16 6.2E-21 135.2 6.3 80 163-250 11-97 (139)
9 4h33_A LMO2059 protein; bilaye 99.6 1.2E-16 4E-21 136.5 4.5 69 174-250 32-100 (137)
10 2a9h_A Voltage-gated potassium 99.6 2.4E-16 8.2E-21 137.4 6.4 80 167-254 59-145 (155)
11 3vou_A ION transport 2 domain 99.6 6.1E-16 2.1E-20 133.4 8.0 73 164-244 31-103 (148)
12 3ouf_A Potassium channel prote 99.6 2E-16 6.9E-21 127.3 2.6 81 7-133 6-86 (97)
13 2q67_A Potassium channel prote 99.6 2E-16 6.7E-21 131.1 2.0 79 9-133 25-103 (114)
14 2ih3_C Voltage-gated potassium 99.6 1.3E-15 4.4E-20 127.5 6.7 75 168-250 37-118 (122)
15 3pjs_K KCSA, voltage-gated pot 99.6 3.2E-17 1.1E-21 144.2 -3.6 77 168-252 43-126 (166)
16 3eff_K Voltage-gated potassium 99.6 3.6E-16 1.2E-20 133.3 3.1 88 9-135 9-96 (139)
17 2k1e_A Water soluble analogue 99.6 6.7E-16 2.3E-20 125.4 3.5 87 9-134 9-95 (103)
18 1lnq_A MTHK channels, potassiu 99.5 1.5E-16 5.2E-21 153.3 -4.8 102 169-283 29-130 (336)
19 3vou_A ION transport 2 domain 99.5 5.2E-15 1.8E-19 127.6 3.6 76 9-130 28-103 (148)
20 4gx0_A TRKA domain protein; me 99.5 2.4E-15 8.1E-20 154.7 1.7 98 169-274 29-135 (565)
21 2ih3_C Voltage-gated potassium 99.5 8.8E-15 3E-19 122.4 4.5 85 12-135 33-117 (122)
22 2a9h_A Voltage-gated potassium 99.5 5.7E-15 1.9E-19 128.7 0.9 86 10-134 54-139 (155)
23 4h33_A LMO2059 protein; bilaye 99.4 8.2E-15 2.8E-19 125.0 -0.4 57 77-133 41-97 (137)
24 2r9r_B Paddle chimera voltage 99.4 3.3E-13 1.1E-17 138.1 5.4 81 185-277 375-455 (514)
25 1xl4_A Inward rectifier potass 99.3 5.4E-13 1.8E-17 127.9 5.8 74 184-275 81-154 (301)
26 3um7_A Potassium channel subfa 99.3 8.1E-14 2.8E-18 133.8 -0.0 79 11-135 202-286 (309)
27 3pjs_K KCSA, voltage-gated pot 99.3 1.4E-15 4.7E-20 133.8 -11.5 83 12-133 39-121 (166)
28 1orq_C Potassium channel; volt 99.3 1.1E-12 3.9E-17 119.3 6.6 74 167-248 140-220 (223)
29 1p7b_A Integral membrane chann 99.3 8.7E-13 3E-17 128.0 5.9 74 184-275 95-168 (333)
30 3ukm_A Potassium channel subfa 99.3 4.9E-13 1.7E-17 126.6 3.0 78 11-133 178-262 (280)
31 1orq_C Potassium channel; volt 99.3 1.5E-12 5.2E-17 118.4 3.2 86 10-134 135-220 (223)
32 2qks_A KIR3.1-prokaryotic KIR 99.2 8.6E-12 3E-16 120.5 6.5 78 183-275 76-153 (321)
33 3beh_A MLL3241 protein; transm 99.2 8.9E-12 3E-16 120.8 6.3 74 168-249 137-217 (355)
34 1lnq_A MTHK channels, potassiu 99.1 6E-13 2E-17 128.1 -7.0 58 77-134 43-100 (336)
35 4gx0_A TRKA domain protein; me 99.0 4.5E-11 1.5E-15 122.8 1.6 88 4-131 15-104 (565)
36 1xl4_A Inward rectifier potass 99.0 1.1E-10 3.8E-15 111.8 2.1 57 77-133 80-136 (301)
37 3beh_A MLL3241 protein; transm 99.0 2.1E-10 7.2E-15 111.0 3.7 86 10-134 131-216 (355)
38 2qks_A KIR3.1-prokaryotic KIR 98.9 4E-10 1.4E-14 108.8 2.2 58 77-134 76-133 (321)
39 1p7b_A Integral membrane chann 98.8 4.4E-10 1.5E-14 109.0 1.1 58 77-134 94-151 (333)
40 3sya_A G protein-activated inw 98.8 6.1E-09 2.1E-13 101.1 8.0 59 184-248 90-148 (340)
41 3spc_A Inward-rectifier K+ cha 98.7 1.3E-08 4.4E-13 98.9 6.7 59 184-248 93-151 (343)
42 2r9r_B Paddle chimera voltage 98.6 1.5E-08 5E-13 103.7 2.7 59 78-136 374-432 (514)
43 3rvy_A ION transport protein; 98.3 4.4E-07 1.5E-11 85.2 5.5 65 184-252 179-245 (285)
44 3sya_A G protein-activated inw 98.3 2.7E-07 9.1E-12 89.5 3.6 56 79-134 91-148 (340)
45 3spc_A Inward-rectifier K+ cha 98.2 4.8E-07 1.6E-11 87.9 2.1 55 79-133 94-150 (343)
46 3rvy_A ION transport protein; 96.9 0.00022 7.5E-09 66.6 1.1 57 79-135 180-242 (285)
47 3pjz_A Potassium uptake protei 95.9 0.013 4.5E-07 59.4 7.3 150 79-236 306-473 (494)
48 4dxw_A Navrh, ION transport pr 95.0 0.018 6.1E-07 51.7 4.2 60 185-248 165-225 (229)
49 3kg2_A Glutamate receptor 2; I 86.9 0.55 1.9E-05 49.2 5.0 54 186-248 564-617 (823)
50 3kg2_A Glutamate receptor 2; I 75.0 0.62 2.1E-05 48.7 0.1 56 77-133 561-616 (823)
51 4f4l_A ION transport protein; 69.9 2.5 8.7E-05 33.7 2.6 32 217-248 67-99 (112)
52 3pjz_A Potassium uptake protei 59.1 3 0.0001 42.0 1.4 24 181-204 202-225 (494)
53 4dxw_A Navrh, ION transport pr 55.6 2.3 7.8E-05 37.7 -0.2 40 79-118 165-208 (229)
54 3naf_A Calcium-activated potas 52.4 1.4 4.8E-05 47.0 -2.5 46 225-274 16-61 (798)
55 1q90_M Cytochrome B6F complex 22.1 1.3E+02 0.0046 19.4 4.1 27 221-247 5-31 (39)
No 1
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.5e-46 Score=361.08 Aligned_cols=241 Identities=27% Similarity=0.490 Sum_probs=189.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhh-cCCChHHHHHHHHHHhh-----cC------CCCC
Q psy8844 7 RTLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNK-YNISPDDFKLLETLILK-----SE------PHKA 74 (353)
Q Consensus 7 r~l~L~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~-~n~s~~~~~~~e~~~~~-----~~------~~~~ 74 (353)
..+.|++++++|+++||++|++||+|+|.+.++.+++.++++.++ +|++++|++.+...+.+ .+ ++..
T Consensus 31 ~~l~Ll~~~~~YL~~GA~vF~~LE~~~E~~~~~~l~~~~~~fl~~~~~~~~~~l~~l~~~v~~A~~~Gv~~~~~~~~~~~ 110 (309)
T 3um7_A 31 TLLALLALVLLYLVSGALVFRALEQPHEQQAQRELGEVREKFLRAHPCVSDQELGLLIKEVADALGGGADPETQSTSQSS 110 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHGGGTSSCCCSCSHHHHHHHHHHHHHHHTTCCCSSCCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcCCCccccccCCCC
Confidence 356788999999999999999999999999888888888776554 56899998876654432 12 2334
Q ss_pred CCCccccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q psy8844 75 GQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLSSVVIRKAKRLSGCTEIEA 154 (353)
Q Consensus 75 ~~~W~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~~~~~i~~~~~~~~~~~~~~~ 154 (353)
+++|+|.+|+||+++|+|||||||++|.|+.||+|+++|+++|||+++++++.+++.+.+..+...++.++....++...
T Consensus 111 ~~~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~i~~le~~~~~~~~~~ 190 (309)
T 3um7_A 111 HSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPP 190 (309)
T ss_dssp --CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTC--C
T ss_pred CCCCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccch
Confidence 56899999999999999999999999999999999999999999999999999999998877666665554433222222
Q ss_pred chhHH---HHHHHHHHHHHHHhhhHHHhhhcCCCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHH
Q psy8844 155 TEINL---ICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFG 231 (353)
Q Consensus 155 ~~~~l---~l~~~~l~~~~i~~ga~~f~~~E~~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~G 231 (353)
....+ ++.+.+...+++++|+++|+..|+|+|+||+||+++|+|||||||++|.++.+. .+|.|++++++++++|
T Consensus 191 ~~~~~~~~~l~~~~~~~~~l~~ga~~~~~~E~~~~~da~y~~~vTltTvGyGd~~p~t~~g~--~~~~y~~~~~~~il~G 268 (309)
T 3um7_A 191 ELVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQ--DSPAYQPLVWFWILLG 268 (309)
T ss_dssp CHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCSSCCTTCCTTC--CCSTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeccccCCCCCCCcccc--ccchHHHHHHHHHHHH
Confidence 22221 222222234567889999999999999999999999999999999999875432 2578999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy8844 232 LAIVAASLNLLVLRFVTM 249 (353)
Q Consensus 232 l~~~a~~~~~i~~~~~~~ 249 (353)
+++++++++.+...+...
T Consensus 269 l~~~a~~~~~i~~~~~~~ 286 (309)
T 3um7_A 269 LAYFASVLTTIGNWLRVV 286 (309)
T ss_dssp HHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999877665443
No 2
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=100.00 E-value=7.8e-47 Score=358.41 Aligned_cols=248 Identities=25% Similarity=0.439 Sum_probs=189.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhh-cCCChHHHHHHHHHHhhc-C-------CCC
Q psy8844 3 KQNIRTLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNK-YNISPDDFKLLETLILKS-E-------PHK 73 (353)
Q Consensus 3 ~~~vr~l~L~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~-~n~s~~~~~~~e~~~~~~-~-------~~~ 73 (353)
|++.+++.|++++++|+++||++|++||+|+|.+.++.+++.++++.++ +|++++|++.+...+.+. + ...
T Consensus 8 r~~~~l~lLil~~~~Yl~~GA~vF~~LE~p~E~~~r~~~~~~~~~fl~~~~~~s~~~l~~~~~~~~~a~~~g~~~~~~~~ 87 (280)
T 3ukm_A 8 NSATMFGFLVLGYLLYLVFGAVVFSSVELPYEDLLRQELRKLKRRFLEEHECLSEQQLEQFLGRVLEASNYGVSVLSQAS 87 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHTTTCCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcCCccccCCC
Confidence 4578899999999999999999999999999999888888888877665 679999988765544321 1 113
Q ss_pred CCCCccccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHHHHHH-HHHHhhhhccccccc
Q psy8844 74 AGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLSS-VVIRKAKRLSGCTEI 152 (353)
Q Consensus 74 ~~~~W~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~~~~-~i~~~~~~~~~~~~~ 152 (353)
..++|+|.+|+||+++|+|||||||++|.|+.||+|+++|+++|||+++++++.+++++..... ...++.++..+.++.
T Consensus 88 ~~~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 167 (280)
T 3ukm_A 88 GNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPVLYFHIRWGFSKQ 167 (280)
T ss_dssp --CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTTTC------CCH
T ss_pred CCCCCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 4568999999999999999999999999999999999999999999999999999988765432 111111111111122
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhHHHhhhc-CCCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHH
Q psy8844 153 EATEINLICVVTTLSSLTIAVGAAAFSRYE-GWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFG 231 (353)
Q Consensus 153 ~~~~~~l~l~~~~l~~~~i~~ga~~f~~~E-~~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~G 231 (353)
..+....++...++..+++++|+++|+..| +|+|+||+||+++|+|||||||++|.+..+. ...+.||+++.++|++|
T Consensus 168 ~~~~~~~~~l~~~~~~~~~~~ga~~~~~~E~~~s~~da~y~~~iTltTvGyGD~~p~t~~~~-~~~~l~r~~~~~~il~G 246 (280)
T 3ukm_A 168 VVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQ-KFRELYKIGITCYLLLG 246 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCCCCSCCSSCSSSC-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhhhhhheeeeeecccCCCCCCCCCccc-ccchhHHHHHHHHHHHH
Confidence 222223333333344457788999999998 9999999999999999999999999764321 11235899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy8844 232 LAIVAASLNLLVLRFVTMNT 251 (353)
Q Consensus 232 l~~~a~~~~~i~~~~~~~~~ 251 (353)
++++++.++.+.......+.
T Consensus 247 l~~~~~~~~~i~~~~~~~~l 266 (280)
T 3ukm_A 247 LIAMLVVLETFCELHELKKF 266 (280)
T ss_dssp HHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999988776665443
No 3
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.68 E-value=3.7e-17 Score=132.88 Aligned_cols=78 Identities=21% Similarity=0.229 Sum_probs=67.9
Q ss_pred HHHHHHHHhhhHHHhhhcCC-------CccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHH
Q psy8844 165 TLSSLTIAVGAAAFSRYEGW-------TYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAA 237 (353)
Q Consensus 165 ~l~~~~i~~ga~~f~~~E~~-------s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~ 237 (353)
+++++++++++.++...|+| +|.||+||+++|+|||||||++|. ++.+|+++++++++|+.++++
T Consensus 13 ~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~--------t~~gr~~~~~~~l~G~~~~~~ 84 (103)
T 2k1e_A 13 EELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPV--------TEEGRKVAEQVMKAGIEVFAL 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCC--------SSSCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCC--------ChhHHHHHHHHHHHHHHHHHH
Confidence 33445667789999999986 999999999999999999999994 477899999999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy8844 238 SLNLLVLRFVTMN 250 (353)
Q Consensus 238 ~~~~i~~~~~~~~ 250 (353)
+++.+...+.+..
T Consensus 85 ~~~~i~~~~~~~~ 97 (103)
T 2k1e_A 85 VTAALATDFVRRE 97 (103)
T ss_dssp THHHHHTTGGGHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877644
No 4
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.66 E-value=8.7e-17 Score=133.18 Aligned_cols=74 Identities=28% Similarity=0.526 Sum_probs=66.3
Q ss_pred HHHHHHHhhhHHHhhhcCCCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy8844 166 LSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLR 245 (353)
Q Consensus 166 l~~~~i~~ga~~f~~~E~~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~ 245 (353)
++.++++.|+++|...|+|+|.||+||+++|+|||||||++|. ++.+|+++.+++++|+.+++..++.+...
T Consensus 30 ~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~T~tTvGyGdi~P~--------t~~gr~~~~~~~~~G~~~~~~~~~~l~~~ 101 (114)
T 2q67_A 30 LTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQ--------TDFGKIFTILYIFIGIGLVFGFIHKLAVN 101 (114)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTSCCCSSCCCC--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcceeCCCCccC--------CHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667799999999999999999999999999999999994 46799999999999999999999999888
Q ss_pred HH
Q psy8844 246 FV 247 (353)
Q Consensus 246 ~~ 247 (353)
+.
T Consensus 102 ~~ 103 (114)
T 2q67_A 102 VQ 103 (114)
T ss_dssp HC
T ss_pred HH
Confidence 74
No 5
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.65 E-value=1.1e-16 Score=124.91 Aligned_cols=71 Identities=28% Similarity=0.507 Sum_probs=64.6
Q ss_pred HHHHHhhhHHHhhhcCCCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8844 168 SLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRF 246 (353)
Q Consensus 168 ~~~i~~ga~~f~~~E~~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~ 246 (353)
..+++.|+.+|+..|+|+|.||+||+++|+|||||||++|. ++.+|+++.+++++|+.++++.++.+.+.+
T Consensus 11 ~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~--------t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 11 LAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPH--------TPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCCSSCCC--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcccCCCCCCCC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677899999999999999999999999999999999994 467999999999999999999999988765
No 6
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.64 E-value=3.2e-17 Score=128.02 Aligned_cols=80 Identities=24% Similarity=0.393 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHhhcCCCCCCCCcccccccee
Q psy8844 7 RTLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSFYY 86 (353)
Q Consensus 7 r~l~L~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~~n~s~~~~~~~e~~~~~~~~~~~~~~W~~~~a~yf 86 (353)
|...+++.++.+++.||.+|+.+| +|++.||+||
T Consensus 2 ~~~~~~~l~~~~~~~g~~~~~~~e----------------------------------------------~~~~~~a~yf 35 (82)
T 3ldc_A 2 PATRILLLVLAVIIYGTAGFHFIE----------------------------------------------GESWTVSLYW 35 (82)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------CCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh----------------------------------------------cCCHHHHHHH
Confidence 455666777789999999999999 8999999999
Q ss_pred eEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHH
Q psy8844 87 ATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERL 132 (353)
Q Consensus 87 ~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l 132 (353)
+.+|+|||||||++|.|+.||+++++++++|++++++.++.+++.+
T Consensus 36 ~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 36 TFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988764
No 7
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.64 E-value=1.9e-16 Score=127.52 Aligned_cols=77 Identities=29% Similarity=0.546 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhhhHHHhhhcCCCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy8844 163 VTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLL 242 (353)
Q Consensus 163 ~~~l~~~~i~~ga~~f~~~E~~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i 242 (353)
..+++.++++.|+..|+..|+|+|.||+||+++|+|||||||++|. ++.+|+++.+++++|+.+++..++.+
T Consensus 10 ~~~~~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~--------t~~gr~~~~~~~~~G~~~~~~~i~~i 81 (97)
T 3ouf_A 10 LFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQ--------TDFGKIFTILYIFIGIGLVFGFIHKL 81 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCCCSSCCC--------SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCC--------CccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456677899999999999999999999999999999999994 36789999999999999999999988
Q ss_pred HHHHH
Q psy8844 243 VLRFV 247 (353)
Q Consensus 243 ~~~~~ 247 (353)
...+.
T Consensus 82 ~~~~~ 86 (97)
T 3ouf_A 82 AVNVQ 86 (97)
T ss_dssp HHHTH
T ss_pred HHHHh
Confidence 87664
No 8
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.63 E-value=1.8e-16 Score=135.19 Aligned_cols=80 Identities=21% Similarity=0.292 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhhhHHHhhhcC-------CCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHH
Q psy8844 163 VTTLSSLTIAVGAAAFSRYEG-------WTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIV 235 (353)
Q Consensus 163 ~~~l~~~~i~~ga~~f~~~E~-------~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~ 235 (353)
..+++++++++++.++...|+ |+|.||+||+++|+|||||||++|. ++.+++++++++++|++++
T Consensus 11 ~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~--------t~~~r~~~~~~~~~G~~~~ 82 (139)
T 3eff_K 11 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPV--------TLWGRLVAVVVMVAGITSF 82 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCC--------SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCC--------CcCHHHHHHHHHHHHHHHH
Confidence 333445567789999999997 9999999999999999999999994 4779999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q psy8844 236 AASLNLLVLRFVTMN 250 (353)
Q Consensus 236 a~~~~~i~~~~~~~~ 250 (353)
+++++.+...+.+..
T Consensus 83 ~~~~~~i~~~~~~~~ 97 (139)
T 3eff_K 83 GLVTAALATWFVGRE 97 (139)
T ss_dssp HHHHHHHTTTTTHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999987776544
No 9
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.63 E-value=1.2e-16 Score=136.50 Aligned_cols=69 Identities=29% Similarity=0.469 Sum_probs=58.8
Q ss_pred hhHHHhhhcCCCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8844 174 GAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMN 250 (353)
Q Consensus 174 ga~~f~~~E~~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~~~~ 250 (353)
++..+...|.|+|.||+||+++|+|||||||++|. ++.+|+++++++++|+++++.+++.+.+.+.+..
T Consensus 32 ~~~~~~e~~~~~~~~a~y~~~~T~tTvGyGDi~P~--------t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 100 (137)
T 4h33_A 32 VPMVFIEPEINNYPDALWWAIVTATTVGYGDIVPV--------TPIGRILASIMMLFGIAFIGMITSTITNFFRCKK 100 (137)
T ss_dssp HHHHHHCSSCCSHHHHHHHHHHHHTTCCCSSSCCC--------SHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcccCCCCCCC--------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444569999999999999999999999994 4789999999999999999999999988776544
No 10
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.63 E-value=2.4e-16 Score=137.36 Aligned_cols=80 Identities=19% Similarity=0.271 Sum_probs=68.9
Q ss_pred HHHHHHhhhHHHhhhcCC-------CccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHH
Q psy8844 167 SSLTIAVGAAAFSRYEGW-------TYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASL 239 (353)
Q Consensus 167 ~~~~i~~ga~~f~~~E~~-------s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~ 239 (353)
+++++++++.++...|+| +|.||+||+++|+|||||||++|. ++.+|+++++++++|++++++++
T Consensus 59 ~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~--------t~~gr~~~~~~~l~Gv~~~a~~~ 130 (155)
T 2a9h_A 59 LVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPV--------TLWGRCVAVVVMVAGITSYGLVF 130 (155)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCC--------SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCC--------ChhHHHHHHHHHHHHHHHHHHHH
Confidence 344567788889999987 899999999999999999999994 47799999999999999999999
Q ss_pred HHHHHHHHhhhhhhH
Q psy8844 240 NLLVLRFVTMNTEDE 254 (353)
Q Consensus 240 ~~i~~~~~~~~~~~~ 254 (353)
+.+...+.+...+++
T Consensus 131 ~~i~~~~~~~~~~~~ 145 (155)
T 2a9h_A 131 AAVATWFVGREQERR 145 (155)
T ss_dssp HHHHHHHHSCCC---
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999987665443
No 11
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.62 E-value=6.1e-16 Score=133.42 Aligned_cols=73 Identities=27% Similarity=0.520 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhhHHHhhhcCCCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q psy8844 164 TTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLV 243 (353)
Q Consensus 164 ~~l~~~~i~~ga~~f~~~E~~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~ 243 (353)
.++++++++.|+++|...|+|+|.||+||+++|+|||||||++|. ++.+++++++++++|+++++.+++.+.
T Consensus 31 ~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~--------t~~~r~~~~~~~~~g~~~~~~~~~~~~ 102 (148)
T 3vou_A 31 FVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQ--------TDFGKVFTILYIFIGIGLVFGFIHKLA 102 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHTTCCCSSCCCC--------SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCC--------CccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455677889999999999999999999999999999999994 467899999999999999999998876
Q ss_pred H
Q psy8844 244 L 244 (353)
Q Consensus 244 ~ 244 (353)
.
T Consensus 103 ~ 103 (148)
T 3vou_A 103 V 103 (148)
T ss_dssp C
T ss_pred H
Confidence 5
No 12
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.60 E-value=2e-16 Score=127.31 Aligned_cols=81 Identities=28% Similarity=0.525 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHhhcCCCCCCCCcccccccee
Q psy8844 7 RTLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSFYY 86 (353)
Q Consensus 7 r~l~L~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~~n~s~~~~~~~e~~~~~~~~~~~~~~W~~~~a~yf 86 (353)
+...+++.++.+++.|+.+|...| +|+|.+|+||
T Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~~e----------------------------------------------~~~~~~a~yf 39 (97)
T 3ouf_A 6 EFQVLFVLTILTLISGTIFYSTVE----------------------------------------------GLRPIDALYF 39 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS----------------------------------------------CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----------------------------------------------CCCHHHHHHH
Confidence 344556666788999999999888 8999999999
Q ss_pred eEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHH
Q psy8844 87 ATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLN 133 (353)
Q Consensus 87 ~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~ 133 (353)
+++|+|||||||++|.|+.||+++++|+++|++++++.++.+++.++
T Consensus 40 ~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~ 86 (97)
T 3ouf_A 40 SVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 86 (97)
T ss_dssp HHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988765
No 13
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.59 E-value=2e-16 Score=131.05 Aligned_cols=79 Identities=28% Similarity=0.507 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHhhcCCCCCCCCccccccceeeE
Q psy8844 9 LSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSFYYAT 88 (353)
Q Consensus 9 l~L~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~~n~s~~~~~~~e~~~~~~~~~~~~~~W~~~~a~yf~~ 88 (353)
..+++.++.++++|+++|...| +|++.+|+||++
T Consensus 25 ~~~~~~~~~~~~~g~~~~~~~e----------------------------------------------~~~~~~a~y~~~ 58 (114)
T 2q67_A 25 QVLFVLTILTLISGTIFYSTVE----------------------------------------------GLRPIDALYFSV 58 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS----------------------------------------------CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----------------------------------------------CCCHHHHHHHHH
Confidence 3445566778899999999988 799999999999
Q ss_pred EEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHH
Q psy8844 89 TVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLN 133 (353)
Q Consensus 89 ~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~ 133 (353)
+|+|||||||++|.|+.||+++++++++|++++++.++.+++.+.
T Consensus 59 ~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~ 103 (114)
T 2q67_A 59 VTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 103 (114)
T ss_dssp HHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888763
No 14
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.59 E-value=1.3e-15 Score=127.48 Aligned_cols=75 Identities=19% Similarity=0.262 Sum_probs=66.1
Q ss_pred HHHHHhhhHHHhhhcC-------CCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHH
Q psy8844 168 SLTIAVGAAAFSRYEG-------WTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLN 240 (353)
Q Consensus 168 ~~~i~~ga~~f~~~E~-------~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~ 240 (353)
.+++.+++.++...|+ |+|.||+||+++|+|||||||++|. ++.+|+++.+++++|+.++++.++
T Consensus 37 ~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~--------t~~gr~~~~~~~~~Gi~~~~~~~~ 108 (122)
T 2ih3_C 37 VIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPV--------TLWGRLVAVVVMVAGITSFGLVTA 108 (122)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCC--------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCC--------CccHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888886 9999999999999999999999994 477999999999999999999999
Q ss_pred HHHHHHHhhh
Q psy8844 241 LLVLRFVTMN 250 (353)
Q Consensus 241 ~i~~~~~~~~ 250 (353)
.+...+.+..
T Consensus 109 ~i~~~~~~~~ 118 (122)
T 2ih3_C 109 ALATWFVGRE 118 (122)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887543
No 15
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.58 E-value=3.2e-17 Score=144.18 Aligned_cols=77 Identities=19% Similarity=0.294 Sum_probs=66.7
Q ss_pred HHHHHhhhHHHhhhcC-------CCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHH
Q psy8844 168 SLTIAVGAAAFSRYEG-------WTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLN 240 (353)
Q Consensus 168 ~~~i~~ga~~f~~~E~-------~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~ 240 (353)
+++++++++++...|+ |+|+||+||+++|+|||||||++|.+ +.+++++++++++|+++++++++
T Consensus 43 ~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t--------~~~r~~~~~~~l~G~~~~~~~~~ 114 (166)
T 3pjs_K 43 VIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVT--------LWGRLVAVVVMVAGITSFGLVTA 114 (166)
T ss_dssp TTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCS--------STTTTTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCC--------HhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888887 99999999999999999999999954 77899999999999999999999
Q ss_pred HHHHHHHhhhhh
Q psy8844 241 LLVLRFVTMNTE 252 (353)
Q Consensus 241 ~i~~~~~~~~~~ 252 (353)
.+...+.+...+
T Consensus 115 ~i~~~~~~~~~~ 126 (166)
T 3pjs_K 115 ALATWFVGQEQQ 126 (166)
T ss_dssp TSSSSSSSSHHH
T ss_pred HHHHHHHHHHHH
Confidence 998777754433
No 16
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.58 E-value=3.6e-16 Score=133.32 Aligned_cols=88 Identities=19% Similarity=0.253 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHhhcCCCCCCCCccccccceeeE
Q psy8844 9 LSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSFYYAT 88 (353)
Q Consensus 9 l~L~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~~n~s~~~~~~~e~~~~~~~~~~~~~~W~~~~a~yf~~ 88 (353)
+..++.+++++++||++|+.+|++. .+...|+|.+|+||++
T Consensus 9 ~~~~~~~~~~~~~~a~~~~~~e~~~---------------------------------------~~~~~~~~~~a~yf~~ 49 (139)
T 3eff_K 9 GAATVLLVIVLLAGSYLAVLAERGA---------------------------------------PGAQLITYPRALWWSV 49 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSC---------------------------------------TTCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC---------------------------------------CCcccCCHHHHHHHHh
Confidence 3445667788999999999999532 1223699999999999
Q ss_pred EEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHHHH
Q psy8844 89 TVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKL 135 (353)
Q Consensus 89 ~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~~ 135 (353)
+|+|||||||++|.|+.||+++++++++|+++++++++.+++.+...
T Consensus 50 ~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~ 96 (139)
T 3eff_K 50 ETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 96 (139)
T ss_dssp HHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHH
T ss_pred eeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988766443
No 17
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.57 E-value=6.7e-16 Score=125.41 Aligned_cols=87 Identities=14% Similarity=0.145 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHhhcCCCCCCCCccccccceeeE
Q psy8844 9 LSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSFYYAT 88 (353)
Q Consensus 9 l~L~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~~n~s~~~~~~~e~~~~~~~~~~~~~~W~~~~a~yf~~ 88 (353)
+..++.++.++++||.+|+.+|+.. .....|+|.+|+||++
T Consensus 9 l~~~~~~~~~~~~~a~~~~~~E~~~---------------------------------------~~~~~~~~~~a~y~~~ 49 (103)
T 2k1e_A 9 QKAEEELQKVLEEASKKAVEAERGA---------------------------------------PGAALISYPDAIWWSV 49 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS---------------------------------------TTCCCCCGGGTTTTTT
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCC---------------------------------------CCcccccHHHHHHHHH
Confidence 3345666788999999999999432 1123579999999999
Q ss_pred EEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHHH
Q psy8844 89 TVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNK 134 (353)
Q Consensus 89 ~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~ 134 (353)
+|+|||||||++|.|+.||+++++++++|++++++.++.+++.+.+
T Consensus 50 ~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~ 95 (103)
T 2k1e_A 50 ETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVR 95 (103)
T ss_dssp GGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGG
T ss_pred HHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888766543
No 18
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=99.53 E-value=1.5e-16 Score=153.31 Aligned_cols=102 Identities=22% Similarity=0.333 Sum_probs=74.8
Q ss_pred HHHHhhhHHHhhhcCCCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8844 169 LTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVT 248 (353)
Q Consensus 169 ~~i~~ga~~f~~~E~~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~~ 248 (353)
+++++|+++|+..|+|+|.||+||+++|+|||||||++|. ++.+|+++++++++|+.++++.++.+...+.+
T Consensus 29 ~~~~~~~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~--------t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (336)
T 1lnq_A 29 AVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPS--------TPLGMYFTVTLIVLGIGTFAVAVERLLEFLIN 100 (336)
T ss_dssp TSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCC--------CSSHHHHHTHHHHTTSTTTTTHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccCCCCCCC--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999899999999999999999999999999994 47799999999999999999999998887776
Q ss_pred hhhhhHHHHHHHHHHhhCCCEEEecccCCCCCccc
Q psy8844 249 MNTEDERRDEAEALQAAQGAVRLEGDVITADGSIL 283 (353)
Q Consensus 249 ~~~~~~~r~~~~~~~~l~~hviv~g~~~~~~g~~~ 283 (353)
...++..+.. + ..+ ++|++|||. +..|...
T Consensus 101 ~~~~~~~~~~-~-~~~-~~~viI~G~--G~~g~~l 130 (336)
T 1lnq_A 101 REQMKLMGLI-D-VAK-SRHVVICGW--SESTLEC 130 (336)
T ss_dssp ------------------CEEEEESC--CHHHHHH
T ss_pred HHHHHHHhhh-h-hcc-cCCEEEECC--cHHHHHH
Confidence 5443321111 1 122 789999997 4455433
No 19
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.50 E-value=5.2e-15 Score=127.56 Aligned_cols=76 Identities=30% Similarity=0.514 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHhhcCCCCCCCCccccccceeeE
Q psy8844 9 LSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSFYYAT 88 (353)
Q Consensus 9 l~L~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~~n~s~~~~~~~e~~~~~~~~~~~~~~W~~~~a~yf~~ 88 (353)
..+++.++.++++|+++|...| +|+|.+|+||++
T Consensus 28 ~~~~~~~~~~~~~g~~~~~~~e----------------------------------------------~~~~~~a~y~~~ 61 (148)
T 3vou_A 28 QVLFVLTFLTLTSGTIFYSTVE----------------------------------------------GLRPLDALYFSV 61 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS----------------------------------------------CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----------------------------------------------CCCHHHHHHHHH
Confidence 3456666788999999999888 799999999999
Q ss_pred EEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHH
Q psy8844 89 TVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGE 130 (353)
Q Consensus 89 ~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~ 130 (353)
+|+|||||||++|.|+.||+++++|+++|+++++++++.++.
T Consensus 62 ~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~ 103 (148)
T 3vou_A 62 VTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAV 103 (148)
T ss_dssp HHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988875
No 20
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=99.50 E-value=2.4e-15 Score=154.72 Aligned_cols=98 Identities=22% Similarity=0.384 Sum_probs=72.2
Q ss_pred HHHHhhhHHHhh----hcC--CCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHH-
Q psy8844 169 LTIAVGAAAFSR----YEG--WTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNL- 241 (353)
Q Consensus 169 ~~i~~ga~~f~~----~E~--~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~- 241 (353)
+++++++++|+. +|+ |+|+||+||+++|+|||||||++|. ++.+++++++++++|+++++++++.
T Consensus 29 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t~tTvGygd~~p~--------~~~~~~~~~~~~~~g~~~~~~~~~~~ 100 (565)
T 4gx0_A 29 VMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTLGFGDITFE--------SDAGYLFASIVTVSGVIFLDIILPFG 100 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTCCCCSSCCC--------SHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCchhhhhheeeeeeeeecCCCcCCC--------CccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554 576 9999999999999999999999994 4678999999999999999999988
Q ss_pred HHHHHHhhhhhhHH--HHHHHHHHhhCCCEEEecc
Q psy8844 242 LVLRFVTMNTEDER--RDEAEALQAAQGAVRLEGD 274 (353)
Q Consensus 242 i~~~~~~~~~~~~~--r~~~~~~~~l~~hviv~g~ 274 (353)
+...+.+...++.. +..++.....++|++|||.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~hviI~G~ 135 (565)
T 4gx0_A 101 FVSMFLAPWIERRLRYHPTIELPDDTRGHILIFGI 135 (565)
T ss_dssp HHHHHHHHHHHHHTSCCCBCCCCTTCCSCEEEESC
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCeEEEECC
Confidence 44444433322211 1111113678999999998
No 21
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.50 E-value=8.8e-15 Score=122.39 Aligned_cols=85 Identities=20% Similarity=0.259 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHhhcCCCCCCCCccccccceeeEEEE
Q psy8844 12 IVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSFYYATTVL 91 (353)
Q Consensus 12 ~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~~n~s~~~~~~~e~~~~~~~~~~~~~~W~~~~a~yf~~~t~ 91 (353)
+..++..+++||.+|+.+|++. .+...|++.+|+||+++|+
T Consensus 33 ~~~~~~~~~~~a~~~~~~E~~~---------------------------------------~~~~~~~~~~a~y~~~~T~ 73 (122)
T 2ih3_C 33 TVLLVIVLLAGSYLAVLAERGA---------------------------------------PGAQLITYPRALWWACETA 73 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS---------------------------------------TTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhheeeecC---------------------------------------CCCccCccccchhheeeee
Confidence 3445567888999999999432 1223699999999999999
Q ss_pred EeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHHHH
Q psy8844 92 TTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKL 135 (353)
Q Consensus 92 TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~~ 135 (353)
|||||||++|.|+.||+++++++++|++++++.++.+++.+.+.
T Consensus 74 tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~ 117 (122)
T 2ih3_C 74 TTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 117 (122)
T ss_dssp TTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988877643
No 22
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.47 E-value=5.7e-15 Score=128.67 Aligned_cols=86 Identities=19% Similarity=0.298 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHhhcCCCCCCCCccccccceeeEE
Q psy8844 10 SLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSFYYATT 89 (353)
Q Consensus 10 ~L~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~~n~s~~~~~~~e~~~~~~~~~~~~~~W~~~~a~yf~~~ 89 (353)
.+++.+++++++||++|+.+|+.. ....-++|.+|+||+++
T Consensus 54 ~~~~~~~~~i~~~a~~~~~~E~~~---------------------------------------~~~~~~s~~~a~y~s~v 94 (155)
T 2a9h_A 54 AATVLLVIVLLAGSYLAVLAERGA---------------------------------------PGAALISYPDALWWSVE 94 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS---------------------------------------SCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC---------------------------------------CCCccCcccceeheeee
Confidence 344556778899999999999431 11235689999999999
Q ss_pred EEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHHH
Q psy8844 90 VLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNK 134 (353)
Q Consensus 90 t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~ 134 (353)
|+|||||||++|.|+.||+++++++++|+.++++.++.+++.+..
T Consensus 95 TltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~ 139 (155)
T 2a9h_A 95 TATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVG 139 (155)
T ss_dssp HHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988877653
No 23
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.43 E-value=8.2e-15 Score=125.00 Aligned_cols=57 Identities=21% Similarity=0.399 Sum_probs=54.1
Q ss_pred CccccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHH
Q psy8844 77 QWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLN 133 (353)
Q Consensus 77 ~W~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~ 133 (353)
.|+|.+|+||+++|+|||||||++|.|+.||+++++++++|+.++++.++.+++.+.
T Consensus 41 ~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~ 97 (137)
T 4h33_A 41 INNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFR 97 (137)
T ss_dssp CCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999998887654
No 24
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.36 E-value=3.3e-13 Score=138.11 Aligned_cols=81 Identities=22% Similarity=0.338 Sum_probs=53.9
Q ss_pred CccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHh
Q psy8844 185 TYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMNTEDERRDEAEALQA 264 (353)
Q Consensus 185 s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~~~~~~~~~r~~~~~~~~ 264 (353)
+|.||+||+++|+|||||||++|.+ +.+++++++++++|+.+++++++.++..|.....+++ .++ .++
T Consensus 375 s~~~a~y~~~vT~TTvGYGDi~P~t--------~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~---~~~-~~~ 442 (514)
T 2r9r_B 375 SIPDAFWWAVVSMTTVGYGDMVPTT--------IGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRET---EGE-EQA 442 (514)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCS--------HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC----------
T ss_pred chhhhhheeeeEEEecccCCCCCCC--------cchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHH
Confidence 8999999999999999999999943 6789999999999999999999999988876543222 222 368
Q ss_pred hCCCEEEecccCC
Q psy8844 265 AQGAVRLEGDVIT 277 (353)
Q Consensus 265 l~~hviv~g~~~~ 277 (353)
+++|+++||+...
T Consensus 443 l~~h~iicg~~~~ 455 (514)
T 2r9r_B 443 QYLQVTSSPKIPS 455 (514)
T ss_dssp -------------
T ss_pred hhCCEEEeCCCcc
Confidence 8999999998553
No 25
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.35 E-value=5.4e-13 Score=127.86 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=64.1
Q ss_pred CCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy8844 184 WTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMNTEDERRDEAEALQ 263 (353)
Q Consensus 184 ~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~~~~~~~~~r~~~~~~~ 263 (353)
++|.||+||+++|+|||||||++|.+ +.+++++.+.+++|+.+++++++.+...+.... +| .
T Consensus 81 ~s~~~a~yfs~vT~tTvGYGDi~P~t--------~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~----~r------~ 142 (301)
T 1xl4_A 81 GSFTDAFFFSVQTMATIGYGKLIPIG--------PLANTLVTLEALCGMLGLAVAASLIYARFTRPT----AG------V 142 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCCSSSCCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC----CC------E
T ss_pred CCHHHHHHHhhhheeccCCCCCcCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----hh------h
Confidence 89999999999999999999999944 778999999999999999999999988885421 11 3
Q ss_pred hhCCCEEEeccc
Q psy8844 264 AAQGAVRLEGDV 275 (353)
Q Consensus 264 ~l~~hviv~g~~ 275 (353)
..++|.++||.+
T Consensus 143 ~fs~~~vI~~~~ 154 (301)
T 1xl4_A 143 LFSSRMVISDFE 154 (301)
T ss_dssp EECSCEEEEEET
T ss_pred ccCCeEEEecCC
Confidence 678999999974
No 26
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.34 E-value=8.1e-14 Score=133.75 Aligned_cols=79 Identities=22% Similarity=0.462 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHhhcCCCCCCCCccccccceeeEEE
Q psy8844 11 LIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSFYYATTV 90 (353)
Q Consensus 11 L~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~~n~s~~~~~~~e~~~~~~~~~~~~~~W~~~~a~yf~~~t 90 (353)
+++.+++|+++|+++|+.+| .|+|.||+||+++|
T Consensus 202 ~~~~~~~~l~~ga~~~~~~E----------------------------------------------~~~~~da~y~~~vT 235 (309)
T 3um7_A 202 LLIGCLLFVLTPTFVFCYME----------------------------------------------DWSKLEAIYFVIVT 235 (309)
T ss_dssp HHHHHHHHTHHHHHHHHHHH----------------------------------------------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc----------------------------------------------CCCHHHHHHHHHhh
Confidence 34556788999999999999 89999999999999
Q ss_pred EEeccccccCcCCCCchh------hhhhhhhccchhhHHHHHHHHHHHHHH
Q psy8844 91 LTTIGYGHSTPNTIGGKL------FTMFYAMVGIPLGLVMFQSIGERLNKL 135 (353)
Q Consensus 91 ~TTIGYG~i~P~T~~gr~------f~~~y~l~GIpl~~~~~~~i~~~l~~~ 135 (353)
+|||||||++|.|+.||. ++++|+++|++++++.++.+++.+...
T Consensus 236 ltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~ 286 (309)
T 3um7_A 236 LTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVV 286 (309)
T ss_dssp HTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred eeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999985 999999999999999999888776543
No 27
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.34 E-value=1.4e-15 Score=133.77 Aligned_cols=83 Identities=20% Similarity=0.299 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHhhcCCCCCCCCccccccceeeEEEE
Q psy8844 12 IVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSFYYATTVL 91 (353)
Q Consensus 12 ~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~~n~s~~~~~~~e~~~~~~~~~~~~~~W~~~~a~yf~~~t~ 91 (353)
++++++++++||++|+.+|++. .....|+|.+|+||+++|+
T Consensus 39 ~~~~~~~~~~~a~~~~~~e~~~---------------------------------------~~~~~~~~~~a~yf~~~T~ 79 (166)
T 3pjs_K 39 TVLLVIVLLAGSYLAVLAERGA---------------------------------------PGAQLITYPRALWWSVETA 79 (166)
T ss_dssp SSSSTTTTTTTSSSSSSTTSSS---------------------------------------TTCCCCSTTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC---------------------------------------CCcccCCHHHHHHHHHHHh
Confidence 3444567788888888888432 1223599999999999999
Q ss_pred EeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHH
Q psy8844 92 TTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLN 133 (353)
Q Consensus 92 TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~ 133 (353)
|||||||++|.|+.||+++++++++|+++++++++.+++.+.
T Consensus 80 tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~ 121 (166)
T 3pjs_K 80 TTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFV 121 (166)
T ss_dssp SCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSS
T ss_pred ccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988776554
No 28
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.33 E-value=1.1e-12 Score=119.29 Aligned_cols=74 Identities=26% Similarity=0.415 Sum_probs=65.0
Q ss_pred HHHHHHhhhHHHhhhcC-------CCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHH
Q psy8844 167 SSLTIAVGAAAFSRYEG-------WTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASL 239 (353)
Q Consensus 167 ~~~~i~~ga~~f~~~E~-------~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~ 239 (353)
..+++.+++.++...|+ |+|.||+||+++|+|||||||++|. ++.+|+++.+++++|++++++++
T Consensus 140 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~--------t~~~~~~~~~~~~~G~~~~~~~i 211 (223)
T 1orq_C 140 VMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPA--------TPIGKVIGIAVMLTGISALTLLI 211 (223)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCC--------SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCC--------CHhHHHHHHHHHHHHHHHHHHHH
Confidence 34455667888888887 8999999999999999999999994 47899999999999999999999
Q ss_pred HHHHHHHHh
Q psy8844 240 NLLVLRFVT 248 (353)
Q Consensus 240 ~~i~~~~~~ 248 (353)
+.+.+.+.+
T Consensus 212 ~~i~~~~~~ 220 (223)
T 1orq_C 212 GTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888764
No 29
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.32 E-value=8.7e-13 Score=127.98 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=64.4
Q ss_pred CCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy8844 184 WTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMNTEDERRDEAEALQ 263 (353)
Q Consensus 184 ~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~~~~~~~~~r~~~~~~~ 263 (353)
++|.||+||+++|+|||||||++|. ++.+++++.+++++|+.+++++++.+...+..... | .
T Consensus 95 ~s~~~a~yfs~vT~tTVGYGDi~P~--------t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~----r------~ 156 (333)
T 1p7b_A 95 PGFVGAFFFSVETLATVGYGDMHPQ--------TVYAHAIATLEIFVGMSGIALSTGLVFARFARPRA----K------I 156 (333)
T ss_dssp SSTHHHHHHHTTTTTTCCCSCCCCC--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC----C------C
T ss_pred CcHHHhHhhhheeeeecCCCCCcCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H------H
Confidence 5899999999999999999999994 47799999999999999999999999988864321 1 3
Q ss_pred hhCCCEEEeccc
Q psy8844 264 AAQGAVRLEGDV 275 (353)
Q Consensus 264 ~l~~hviv~g~~ 275 (353)
..++|.++|+.+
T Consensus 157 ~fs~~~VI~~~~ 168 (333)
T 1p7b_A 157 MFARHAIVRPFN 168 (333)
T ss_dssp EECSCEEEEECS
T ss_pred HhCCCEEEcCCC
Confidence 578999999985
No 30
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.31 E-value=4.9e-13 Score=126.64 Aligned_cols=78 Identities=31% Similarity=0.512 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHhhcCCCCCCCCccccccceeeEEE
Q psy8844 11 LIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSFYYATTV 90 (353)
Q Consensus 11 L~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~~n~s~~~~~~~e~~~~~~~~~~~~~~W~~~~a~yf~~~t 90 (353)
+++.+++++++||++|+.+| .+|+|.||+||+++|
T Consensus 178 ~~~~~~~~~~~ga~~~~~~E---------------------------------------------~~~s~~da~y~~~iT 212 (280)
T 3ukm_A 178 GFVTVSCFFFIPAAVFSVLE---------------------------------------------DDWNFLESFYFCFIS 212 (280)
T ss_dssp HHHHHHHHTHHHHHHHHHHS---------------------------------------------SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHh---------------------------------------------cCCchhhhhhheeee
Confidence 34556788999999999999 279999999999999
Q ss_pred EEeccccccCcCCCCc-------hhhhhhhhhccchhhHHHHHHHHHHHH
Q psy8844 91 LTTIGYGHSTPNTIGG-------KLFTMFYAMVGIPLGLVMFQSIGERLN 133 (353)
Q Consensus 91 ~TTIGYG~i~P~T~~g-------r~f~~~y~l~GIpl~~~~~~~i~~~l~ 133 (353)
+|||||||++|.|+.| |+++++|+++|+.++++.++.+.+.+.
T Consensus 213 ltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~ 262 (280)
T 3ukm_A 213 LSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHE 262 (280)
T ss_dssp HTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHH
T ss_pred eecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999975 999999999999999999999887654
No 31
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.26 E-value=1.5e-12 Score=118.44 Aligned_cols=86 Identities=21% Similarity=0.312 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHhhcCCCCCCCCccccccceeeEE
Q psy8844 10 SLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSFYYATT 89 (353)
Q Consensus 10 ~L~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~~n~s~~~~~~~e~~~~~~~~~~~~~~W~~~~a~yf~~~ 89 (353)
.++..++.++++||.+++.+|++. .+..-|++.+|+||+++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~e~~~---------------------------------------~~~~~~~~~~s~y~~~~ 175 (223)
T 1orq_C 135 HLFGAVMLTVLYGAFAIYIVEYPD---------------------------------------PNSSIKSVFDALWWAVV 175 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSS---------------------------------------TTCSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC---------------------------------------cCCCcCcchhHHHhHHh
Confidence 345556677888999999999432 11235899999999999
Q ss_pred EEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHHH
Q psy8844 90 VLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNK 134 (353)
Q Consensus 90 t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~ 134 (353)
|+||+||||++|.|+.||+++++++++|+.++++.++.+++.+.+
T Consensus 176 t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 176 TATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887764
No 32
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.22 E-value=8.6e-12 Score=120.46 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=63.7
Q ss_pred CCCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy8844 183 GWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMNTEDERRDEAEAL 262 (353)
Q Consensus 183 ~~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~~~~~~~~~r~~~~~~ 262 (353)
+|+|.||+||+++|+|||||||++|.+ +.+++++.+.+++|+.+++++++.++..+.....+ . + .
T Consensus 76 ~~s~~~a~y~s~vT~tTVGYGDi~P~t--------~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~r----~--~-~ 140 (321)
T 2qks_A 76 PAGFGGAFFFSVETLATVGYGDMHPQT--------VYAHWIATLEIFVGMSSIALATGCAFIKMSQPKKR----A--E-T 140 (321)
T ss_dssp STTHHHHHHHHHHHHTTCCCCSSCBCS--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCG----G--G-T
T ss_pred CcchhheeeeeeEEeccccCCCcCccc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----h--h-h
Confidence 469999999999999999999999954 77899999999999999999999999888643211 1 1 1
Q ss_pred HhhCCCEEEeccc
Q psy8844 263 QAAQGAVRLEGDV 275 (353)
Q Consensus 263 ~~l~~hviv~g~~ 275 (353)
-..++|.+||+.+
T Consensus 141 i~fS~~avI~~~~ 153 (321)
T 2qks_A 141 LMFSEHAVISMRD 153 (321)
T ss_dssp EEECSCEEEEEET
T ss_pred hhcCCceEEecCC
Confidence 3457888888764
No 33
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.21 E-value=8.9e-12 Score=120.76 Aligned_cols=74 Identities=19% Similarity=0.241 Sum_probs=64.6
Q ss_pred HHHHHhhhHHHhhhcCC-------CccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHH
Q psy8844 168 SLTIAVGAAAFSRYEGW-------TYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLN 240 (353)
Q Consensus 168 ~~~i~~ga~~f~~~E~~-------s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~ 240 (353)
.+++.++|.++...|++ ++.||+||+++|+|||||||++|. ++.+++++++++++|+++++++++
T Consensus 137 ~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~--------t~~~~~~~~~~~~~g~~~~~~~~~ 208 (355)
T 3beh_A 137 GVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQ--------SFAGRVLAGAVMMSGIGIFGLWAG 208 (355)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCC--------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCC--------ChhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888888875 899999999999999999999994 477899999999999999999999
Q ss_pred HHHHHHHhh
Q psy8844 241 LLVLRFVTM 249 (353)
Q Consensus 241 ~i~~~~~~~ 249 (353)
.++..+.+.
T Consensus 209 ~i~~~~~~~ 217 (355)
T 3beh_A 209 ILATGFYQE 217 (355)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888753
No 34
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=99.12 E-value=6e-13 Score=128.12 Aligned_cols=58 Identities=28% Similarity=0.388 Sum_probs=53.5
Q ss_pred CccccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHHH
Q psy8844 77 QWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNK 134 (353)
Q Consensus 77 ~W~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~ 134 (353)
.|+|.+|+||+++|+|||||||++|.|..||+|+++++++|++++.+.++.+.+.+..
T Consensus 43 ~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (336)
T 1lnq_A 43 GESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLIN 100 (336)
T ss_dssp SCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC--
T ss_pred CCCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999888776543
No 35
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=99.02 E-value=4.5e-11 Score=122.81 Aligned_cols=88 Identities=28% Similarity=0.436 Sum_probs=69.8
Q ss_pred ccchHHHH-HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHhhcCCCCCCCCccccc
Q psy8844 4 QNIRTLSL-IVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAG 82 (353)
Q Consensus 4 ~~vr~l~L-~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~~n~s~~~~~~~e~~~~~~~~~~~~~~W~~~~ 82 (353)
++.+.+.. ++.+++.+++++++|+.++...| +..|+|.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e----------------------------------------~~~~~~~~ 54 (565)
T 4gx0_A 15 QNLKVLLLYCAFLLVMLLAYASIFRYLMWHLE----------------------------------------GRAYSFMA 54 (565)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------CCCCCHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------------------------------CCCCchhh
Confidence 34444444 45556778889999988762110 23699999
Q ss_pred cceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHH-HHHH
Q psy8844 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQS-IGER 131 (353)
Q Consensus 83 a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~-i~~~ 131 (353)
|+||+++|+|||||||++|.|+.||+|+++++++|++++++.++. +.+.
T Consensus 55 ~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 104 (565)
T 4gx0_A 55 GIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSM 104 (565)
T ss_dssp HHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888876 4443
No 36
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.97 E-value=1.1e-10 Score=111.79 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=52.9
Q ss_pred CccccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHH
Q psy8844 77 QWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLN 133 (353)
Q Consensus 77 ~W~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~ 133 (353)
.|+|.+|+||+++|+|||||||++|.|+.||+++++.+++|+.+.+++++.+...+.
T Consensus 80 ~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 80 PGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999998887766554
No 37
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=98.96 E-value=2.1e-10 Score=111.05 Aligned_cols=86 Identities=16% Similarity=0.226 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHhhcCCCCCCCCccccccceeeEE
Q psy8844 10 SLIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEPHKAGQQWKFAGSFYYATT 89 (353)
Q Consensus 10 ~L~v~~~~YlliGA~vF~~lE~~~e~~~~~~l~~~~~~~~~~~n~s~~~~~~~e~~~~~~~~~~~~~~W~~~~a~yf~~~ 89 (353)
.+++.+++.++++|.+++.+|+..... .-.++.+|+||+++
T Consensus 131 ~~~~~~~~~~~~~a~~~~~~e~~~~~~---------------------------------------~f~~~~~s~y~~~~ 171 (355)
T 3beh_A 131 GVTTLFGVVLFAVALAAYVIERDIQPE---------------------------------------KFGSIPQAMWWAVV 171 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCHH---------------------------------------HHSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCc---------------------------------------ccccHHHHHHHHHh
Confidence 334445566788999999999532100 01368999999999
Q ss_pred EEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHHH
Q psy8844 90 VLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNK 134 (353)
Q Consensus 90 t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~ 134 (353)
|+||+||||++|.|+.||+++++++++|+.++.+.++.+++.+..
T Consensus 172 t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 216 (355)
T 3beh_A 172 TLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQ 216 (355)
T ss_dssp HHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred heeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988877654
No 38
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.88 E-value=4e-10 Score=108.82 Aligned_cols=58 Identities=21% Similarity=0.415 Sum_probs=53.9
Q ss_pred CccccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHHH
Q psy8844 77 QWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNK 134 (353)
Q Consensus 77 ~W~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~ 134 (353)
.|+|.+|+||+++|+|||||||++|.|..||+++++.+++|+.+.+++++.+...+.+
T Consensus 76 ~~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~ 133 (321)
T 2qks_A 76 PAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQ 133 (321)
T ss_dssp STTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999998887766654
No 39
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.84 E-value=4.4e-10 Score=108.98 Aligned_cols=58 Identities=22% Similarity=0.417 Sum_probs=53.4
Q ss_pred CccccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHHH
Q psy8844 77 QWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNK 134 (353)
Q Consensus 77 ~W~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~ 134 (353)
.++|.+|+||+++|+|||||||++|.|+.||+++++++++|+.+.+++++.+...+.+
T Consensus 94 ~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~ 151 (333)
T 1p7b_A 94 PPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFAR 151 (333)
T ss_dssp SSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999998887766653
No 40
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.82 E-value=6.1e-09 Score=101.08 Aligned_cols=59 Identities=24% Similarity=0.349 Sum_probs=53.4
Q ss_pred CCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8844 184 WTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVT 248 (353)
Q Consensus 184 ~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~~ 248 (353)
-+|.||+||+++|+|||||||+.|.. ..|.+++++.+.+++|+.+++.+++++..++..
T Consensus 90 ~sf~~af~fSv~T~TTvGYGd~~p~~------~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~sr 148 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIGYGYRVITD------KCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQ 148 (340)
T ss_dssp CSTTHHHHHHHHHHSCCCCSSSCBCT------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHhhhheeeeeecCCCccCcC------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 37899999999999999999999953 357899999999999999999999999999864
No 41
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.71 E-value=1.3e-08 Score=98.87 Aligned_cols=59 Identities=17% Similarity=0.277 Sum_probs=53.2
Q ss_pred CCccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8844 184 WTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVT 248 (353)
Q Consensus 184 ~s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~~ 248 (353)
-+|.||+||+++|+|||||||+.|.. ..|.+++++.+-+++|+.+++.+++++..++..
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~------~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTE------ECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECS------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHhheeeeeeEeecCCCccCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 37899999999999999999999842 357899999999999999999999999999864
No 42
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.58 E-value=1.5e-08 Score=103.65 Aligned_cols=59 Identities=29% Similarity=0.491 Sum_probs=54.0
Q ss_pred ccccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHHHHH
Q psy8844 78 WKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLS 136 (353)
Q Consensus 78 W~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~~~ 136 (353)
+++.+|+||+++|+||+||||+.|.|..||+|+++++++|+.++.+.++.+.+.++...
T Consensus 374 ~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~ 432 (514)
T 2r9r_B 374 PSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 432 (514)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred cchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999888887666554
No 43
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.32 E-value=4.4e-07 Score=85.22 Aligned_cols=65 Identities=17% Similarity=0.245 Sum_probs=49.7
Q ss_pred CCccchhheeeeeccccccC-ccc-cccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8844 184 WTYFDSVYYCFITLTTIGFG-DMV-ALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMNTE 252 (353)
Q Consensus 184 ~s~~da~Yf~~iTlTTVGfG-Div-P~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~~~~~~ 252 (353)
-|+.+|+||.++|+||+||| |+. |.+.. ....++.|..+.++.|+.+++++++.+.+.|.+...+
T Consensus 179 ~s~~~a~~~~~~~~T~~g~~~di~~p~~~~----~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~ 245 (285)
T 3rvy_A 179 GTLGESFYTLFQVMTLESWSMGIVRPLMEV----YPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQK 245 (285)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCCHHHHHTT----CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHc----CChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999 997 87642 1123477888888999999999999999999765433
No 44
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.30 E-value=2.7e-07 Score=89.55 Aligned_cols=56 Identities=20% Similarity=0.379 Sum_probs=50.0
Q ss_pred cccccceeeEEEEEeccccccCcC--CCCchhhhhhhhhccchhhHHHHHHHHHHHHH
Q psy8844 79 KFAGSFYYATTVLTTIGYGHSTPN--TIGGKLFTMFYAMVGIPLGLVMFQSIGERLNK 134 (353)
Q Consensus 79 ~~~~a~yf~~~t~TTIGYG~i~P~--T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~~ 134 (353)
+|.+||||+++|+|||||||++|. ++.|+++..+-+++|+.+.+++.+.+...+.+
T Consensus 91 sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~sr 148 (340)
T 3sya_A 91 GFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQ 148 (340)
T ss_dssp STTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 689999999999999999999997 68899999999999999999888776655543
No 45
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.16 E-value=4.8e-07 Score=87.85 Aligned_cols=55 Identities=22% Similarity=0.387 Sum_probs=48.6
Q ss_pred cccccceeeEEEEEeccccccCc--CCCCchhhhhhhhhccchhhHHHHHHHHHHHH
Q psy8844 79 KFAGSFYYATTVLTTIGYGHSTP--NTIGGKLFTMFYAMVGIPLGLVMFQSIGERLN 133 (353)
Q Consensus 79 ~~~~a~yf~~~t~TTIGYG~i~P--~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~ 133 (353)
+|.+||||+++|+|||||||++| .++.|+++..+=+++|+.+.+++.+.+...+.
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~s 150 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMA 150 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999986 48999999999999999998888876655544
No 46
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=96.89 E-value=0.00022 Score=66.64 Aligned_cols=57 Identities=18% Similarity=0.143 Sum_probs=46.4
Q ss_pred cccccceeeEEEEEecccc-ccC-cCCCCc----hhhhhhhhhccchhhHHHHHHHHHHHHHH
Q psy8844 79 KFAGSFYYATTVLTTIGYG-HST-PNTIGG----KLFTMFYAMVGIPLGLVMFQSIGERLNKL 135 (353)
Q Consensus 79 ~~~~a~yf~~~t~TTIGYG-~i~-P~T~~g----r~f~~~y~l~GIpl~~~~~~~i~~~l~~~ 135 (353)
++.+|+|+++.++||.||| |+. |.+..| +.|..+.++.|+.+..+.++.+.+.++..
T Consensus 180 s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~ 242 (285)
T 3rvy_A 180 TLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAIL 242 (285)
T ss_dssp SHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999 996 888766 78888888888888888888877766543
No 47
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=95.89 E-value=0.013 Score=59.36 Aligned_cols=150 Identities=14% Similarity=0.168 Sum_probs=84.0
Q ss_pred cccccceeeEEEEEeccccc--cCcCCCCchhhhhhhhhccchh--hH-----HHHHHHHHHHHHHHHHHHHhhh----h
Q psy8844 79 KFAGSFYYATTVLTTIGYGH--STPNTIGGKLFTMFYAMVGIPL--GL-----VMFQSIGERLNKLSSVVIRKAK----R 145 (353)
Q Consensus 79 ~~~~a~yf~~~t~TTIGYG~--i~P~T~~gr~f~~~y~l~GIpl--~~-----~~~~~i~~~l~~~~~~i~~~~~----~ 145 (353)
++.+|+|.+.+..||.||.. ...-++..+++.++.+++|=.- ++ .-+..+.. ...+.+.+... .
T Consensus 306 ~l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG~~GSTaGGIKv~r~~il~~---~~~~el~~~~~P~~v~ 382 (494)
T 3pjz_A 306 AFDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGGCAGSTGGGMKVIRILLLTL---QGARELKRLVHPRAVY 382 (494)
T ss_dssp HHHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCSCTTSSCCSSCHHHHHHHHH---HHHHHHHHHHCSSSCC
T ss_pred HHHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHcCCcccCCCchhHHHHHHHHH---HHHHHHhcccCCCcce
Confidence 46788888999999999974 4445667788888888888321 10 11111111 11112222111 0
Q ss_pred --cccccccccchhHHHHHHHHHHHHHHHhhhHHHhhhcCCCccchhheeeeecccccc--CccccccccCccCCCCcch
Q psy8844 146 --LSGCTEIEATEINLICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGF--GDMVALQKDNALDTKPEYV 221 (353)
Q Consensus 146 --~~~~~~~~~~~~~l~l~~~~l~~~~i~~ga~~f~~~E~~s~~da~Yf~~iTlTTVGf--GDivP~~~~~~~~~~~~~~ 221 (353)
....|+.+.+...-.+.+.++..+++.+++.+... .+.++.+|+.=+.-+++|||- |.+-|.+. .-++..|
T Consensus 383 ~v~~~~r~i~~~~v~~~~~~~~ly~~~~~~~~~~l~~-~g~~~~~a~~~v~Sal~nvG~s~G~vg~~~~----~L~~~~K 457 (494)
T 3pjz_A 383 TIKVGGSALPQRVVDAVWGFFSAYALVFVVCMLGLIA-TGMDELSAFSAVAATLNNLGPGLGEVALHFG----DVNDKAK 457 (494)
T ss_dssp CCCSSSCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHH-HSSCHHHHHHHHHHHTTTCCSCCSSSCCCCS----SSCHHHH
T ss_pred eeeECCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHcCCCCcccccCCCcc----cCCHHHH
Confidence 11223333333333334444444445555555544 458999999998999999995 54333211 1235678
Q ss_pred hhhHHHHHHH-HHHHH
Q psy8844 222 IFALIFILFG-LAIVA 236 (353)
Q Consensus 222 ~f~~i~il~G-l~~~a 236 (353)
++.++.|++| +.+++
T Consensus 458 ~vl~~~M~~GRLei~t 473 (494)
T 3pjz_A 458 WVLIVSMLFGRLEIFT 473 (494)
T ss_dssp HHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHhHHHH
Confidence 8888888888 44443
No 48
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=94.97 E-value=0.018 Score=51.73 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=43.3
Q ss_pred CccchhheeeeeccccccCccccccccCccCCCCcchhhhH-HHHHHHHHHHHHHHHHHHHHHHh
Q psy8844 185 TYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFAL-IFILFGLAIVAASLNLLVLRFVT 248 (353)
Q Consensus 185 s~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~-i~il~Gl~~~a~~~~~i~~~~~~ 248 (353)
|+.+|+|+.+.++||.|++|+.....+ ..|.+.++-+ ..++.+..++.++++.+.+.|.+
T Consensus 165 ~~~~a~~~lf~~~t~~~w~~i~~~~~~----~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~~ 225 (229)
T 4dxw_A 165 DLGISLITLFQVLTLSSWETVMLPMQE----IYWWSWVYFFSFIIICSITILNLVIAILVDVVIQ 225 (229)
T ss_dssp SHHHHHHHHHHHHTTSSTHHHHHHHHT----TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHH----hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999998543321 2344444444 44445588888888888888864
No 49
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=86.92 E-value=0.55 Score=49.18 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=41.8
Q ss_pred ccchhheeeeeccccccCccccccccCccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8844 186 YFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVT 248 (353)
Q Consensus 186 ~~da~Yf~~iTlTTVGfGDivP~~~~~~~~~~~~~~~f~~i~il~Gl~~~a~~~~~i~~~~~~ 248 (353)
+.+++||++.+++..| ++..| .....|++..+|+++++.+.+...+.+++.+..
T Consensus 564 ~~~~~~~~~~~l~~~g-~~~~p--------~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 564 IFNSLWFSLGAFMQQG-ADISP--------RSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHTTTTSCC-------C--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CCcCC--------cchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5689999999999998 67776 346789999999999999999999999887763
No 50
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=75.00 E-value=0.62 Score=48.73 Aligned_cols=56 Identities=9% Similarity=0.251 Sum_probs=44.2
Q ss_pred CccccccceeeEEEEEeccccccCcCCCCchhhhhhhhhccchhhHHHHHHHHHHHH
Q psy8844 77 QWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLN 133 (353)
Q Consensus 77 ~W~~~~a~yf~~~t~TTIGYG~i~P~T~~gr~f~~~y~l~GIpl~~~~~~~i~~~l~ 133 (353)
++++.+++||++.+++..| ++..|.+..+|++.++|.++++.+....-+++...+.
T Consensus 561 ~~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt 616 (823)
T 3kg2_A 561 EFGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 616 (823)
T ss_dssp HHHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678899999999999888 7889999999999999999999988888877777665
No 51
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=69.90 E-value=2.5 Score=33.71 Aligned_cols=32 Identities=16% Similarity=0.406 Sum_probs=14.8
Q ss_pred CCcchhhhHHHHHHH-HHHHHHHHHHHHHHHHh
Q psy8844 217 KPEYVIFALIFILFG-LAIVAASLNLLVLRFVT 248 (353)
Q Consensus 217 ~~~~~~f~~i~il~G-l~~~a~~~~~i~~~~~~ 248 (353)
.|...++-+.++++| ..++.++++.+...+.+
T Consensus 67 ~~~a~iyFi~fi~i~~fi~lNLfiaVi~~~f~~ 99 (112)
T 4f4l_A 67 HPNAWVFFIPFIMLTTFTVLNLFIGIIVDAMAI 99 (112)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHHTTTC------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555 55666666666666543
No 52
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=59.15 E-value=3 Score=42.00 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=20.5
Q ss_pred hcCCCccchhheeeeeccccccCc
Q psy8844 181 YEGWTYFDSVYYCFITLTTIGFGD 204 (353)
Q Consensus 181 ~E~~s~~da~Yf~~iTlTTVGfGD 204 (353)
..|.+++||+..++.|++|=||.-
T Consensus 202 ~~Gm~~fdAi~Ha~Sa~~tgGFs~ 225 (494)
T 3pjz_A 202 LAGMTPFDAISHSFSTIAIGGFST 225 (494)
T ss_dssp HHTCCSHHHHTTTHHHHTTCCCCS
T ss_pred HcCCcHHHHHHHHHHHHhCCCCCC
Confidence 457889999999999999988854
No 53
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=55.57 E-value=2.3 Score=37.66 Aligned_cols=40 Identities=10% Similarity=0.009 Sum_probs=29.3
Q ss_pred cccccceeeEEEEEeccccccC----cCCCCchhhhhhhhhccc
Q psy8844 79 KFAGSFYYATTVLTTIGYGHST----PNTIGGKLFTMFYAMVGI 118 (353)
Q Consensus 79 ~~~~a~yf~~~t~TTIGYG~i~----P~T~~gr~f~~~y~l~GI 118 (353)
++.+|++..+.++|+-|++|+. ..++.+.++.+.|.++|-
T Consensus 165 ~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~ 208 (229)
T 4dxw_A 165 DLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICS 208 (229)
T ss_dssp SHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 5899999999999999999872 234556666666655553
No 54
>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens}
Probab=52.44 E-value=1.4 Score=47.00 Aligned_cols=46 Identities=13% Similarity=0.005 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhCCCEEEecc
Q psy8844 225 LIFILFGLAIVAASLNLLVLRFVTMNTEDERRDEAEALQAAQGAVRLEGD 274 (353)
Q Consensus 225 ~i~il~Gl~~~a~~~~~i~~~~~~~~~~~~~r~~~~~~~~l~~hviv~g~ 274 (353)
+..|+.|+++++..++.++..+.++.....+ .+ ..+.++|++|||+
T Consensus 16 ~~~IlgGI~lFa~~ig~liel~~~r~~~~G~--y~--~~~~k~HIIIcG~ 61 (798)
T 3naf_A 16 LEEILSKLYHIENELARIKKLLGERKKYGGS--YS--AVSGRKHIVVCGH 61 (798)
T ss_dssp --------------------------CCCSS--CC--CCCSSEEEEEESC
T ss_pred heehhHHHHHHHHHHHHHHHHHHHHHhhCCc--cc--cccCCCeEEEEcC
Confidence 3568999999999999999887764433221 11 1467999999996
No 55
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=22.09 E-value=1.3e+02 Score=19.42 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=22.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8844 221 VIFALIFILFGLAIVAASLNLLVLRFV 247 (353)
Q Consensus 221 ~~f~~i~il~Gl~~~a~~~~~i~~~~~ 247 (353)
-+|....+++|+.++++.++++..++-
T Consensus 5 EIf~~A~i~~~L~LvGla~Gf~LLkiq 31 (39)
T 1q90_M 5 FIAGTALTMVGMTLVGLAIGFVLLRVE 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 478888899999999999998887763
Done!