RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8844
(353 letters)
>3um7_A Potassium channel subfamily K member 4; potassium ION channel,
metal transport; 3.31A {Homo sapiens}
Length = 309
Score = 200 bits (508), Expect = 5e-62
Identities = 74/286 (25%), Positives = 124/286 (43%), Gaps = 19/286 (6%)
Query: 2 KKQNIRTLSLIVCTFTYLLIGASVFDALESQTENRRWTTLSDI-EKMIMNKYNISPDDFK 60
++ L+L+ YL+ GA VF ALE E + L ++ EK + +S +
Sbjct: 26 AMRSTTLLALLALVLLYLVSGALVFRALEQPHEQQAQRELGEVREKFLRAHPCVSDQELG 85
Query: 61 LLETLILK-----------SEPHKAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLF 109
LL + S + W +F+++ T++TTIGYG+ T G+LF
Sbjct: 86 LLIKEVADALGGGADPETQSTSQSSHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLF 145
Query: 110 TMFYAMVGIPLGLVMFQSIGERLNKLSSVVIRKAKRLSGCTEIEATEINLICVVTTL--- 166
+FYA+VGIPL ++ +G+RL I + + + + ++ + L
Sbjct: 146 CIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPPELVRVLSAMLFLLIG 205
Query: 167 SSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALI 226
L + F E W+ +++Y+ +TLTT+GFGD VA + P Y
Sbjct: 206 CLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVA--GADPRQDSPAYQPLVWF 263
Query: 227 FILFGLAIVAASLNLL--VLRFVTMNTEDERRDEAEALQAAQGAVR 270
+IL GLA A+ L + LR V+ T E + + +
Sbjct: 264 WILLGLAYFASVLTTIGNWLRVVSRRTRAEMGGLTAQSNSLEVLFQ 309
>3ukm_A Potassium channel subfamily K member 1; membrane protein,
eukaryotic, two-pore DO potassium channel, K2P channel,
membrane; HET: UND; 3.40A {Homo sapiens}
Length = 280
Score = 183 bits (465), Expect = 6e-56
Identities = 61/244 (25%), Positives = 115/244 (47%), Gaps = 12/244 (4%)
Query: 11 LIVCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKY-NISPDDFKLLETLILKS 69
L++ YL+ GA VF ++E E+ L +++ + ++ +S + +L++
Sbjct: 16 LVLGYLLYLVFGAVVFSSVELPYEDLLRQELRKLKRRFLEEHECLSEQQLEQFLGRVLEA 75
Query: 70 EPH--------KAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLG 121
+ W F + ++A+TVL+T GYGH+ P + GGK F + Y+++GIP
Sbjct: 76 SNYGVSVLSQASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFT 135
Query: 122 LVMFQSIGERLNK-LSSVVIRKAKRLSGCTEIEATEINLICVVTTLSSLTIAVGAAAFSR 180
L+ ++ +R+ ++ + G ++ ++ + + S + AA FS
Sbjct: 136 LLFLTAVVQRITVHVTRRPVLYFHIRWGFSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSV 195
Query: 181 YE-GWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASL 239
E W + +S Y+CFI+L+TIG GD V + N + Y I ++L GL + L
Sbjct: 196 LEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQ-KFRELYKIGITCYLLLGLIAMLVVL 254
Query: 240 NLLV 243
Sbjct: 255 ETFC 258
Score = 45.2 bits (106), Expect = 2e-05
Identities = 22/138 (15%), Positives = 39/138 (28%), Gaps = 20/138 (14%)
Query: 13 VCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSEP- 71
Y +IG + R ++ + + + +L
Sbjct: 122 AFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPVLYFHIRWGFSKQVVAIVHAVLLGFVT 181
Query: 72 ------------HKAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGG-------KLFTMF 112
W F SFY+ L+TIG G P K+
Sbjct: 182 VSCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITC 241
Query: 113 YAMVGIPLGLVMFQSIGE 130
Y ++G+ LV+ ++ E
Sbjct: 242 YLLLGLIAMLVVLETFCE 259
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
4-helical bundle, ION channel, membrane, transport
protein; 3.20A {Bacillus weihenstephanensis}
Length = 148
Score = 71.1 bits (174), Expect = 3e-15
Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 10/132 (7%)
Query: 132 LNKLSSVVIRKAKRLSGCTEIEATEINLICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVY 191
+ + S ++ + L C V+ L+ LT+ G +S EG D++Y
Sbjct: 1 MGSMLSFILTLKRMLKACLRAWKD--KEFQVLFVLTFLTLTSGTIFYSTVEGLRPLDALY 58
Query: 192 YCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVLRFVTMNT 251
+ +TLTT+G G+ +F +++I G+ +V ++ L + +
Sbjct: 59 FSVVTLTTVGDGNFS--------PQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSI 110
Query: 252 EDERRDEAEALQ 263
R+ E +A +
Sbjct: 111 LSNRKKETDAYR 122
Score = 52.6 bits (126), Expect = 1e-08
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 78 WKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLSS 137
+ + Y++ LTT+G G+ +P T GK+FT+ Y +GI L + + S
Sbjct: 51 LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSI 110
Query: 138 VVIRKAKR 145
+ RK +
Sbjct: 111 LSNRKKET 118
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer,
central cavity, ION metal transport, membrane protein;
2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A
2ahz_A
Length = 114
Score = 65.7 bits (160), Expect = 1e-13
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 158 NLICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTK 217
V+ L+ LT+ G +S EG D++Y+ +TLTT+G G+
Sbjct: 22 KEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFS--------PQT 73
Query: 218 PEYVIFALIFILFGLAIVAASLNLLVLRFV 247
IF +++I G+ +V ++ L +
Sbjct: 74 DFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 103
Score = 52.6 bits (126), Expect = 6e-09
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 78 WKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERL 132
+ + Y++ LTT+G G+ +P T GK+FT+ Y +GI L + +
Sbjct: 48 LRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNV 102
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel,
open conformation, IO transport; 1.45A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3lde_A 3r65_A 3ous_A 3ldd_A
Length = 82
Score = 64.3 bits (157), Expect = 2e-13
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 160 ICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPE 219
+ L I G A F EG ++ S+Y+ F+T+ T+G+GD P
Sbjct: 3 ATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHT--------PL 54
Query: 220 YVIFALIFILFGLAIVAASLNLLVLRFV 247
+ F I+ G+ A ++ L+ +
Sbjct: 55 GMYFTCTLIVLGIGTFAVAVERLLEFLI 82
Score = 50.0 bits (120), Expect = 2e-08
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 78 WKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERL 132
+ S Y+ + T+GYG +P+T G FT ++GI V + + E L
Sbjct: 27 ESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein;
1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A
3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A
3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Length = 97
Score = 62.9 bits (153), Expect = 7e-13
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 162 VVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYV 221
V+ L+ LT+ G +S EG D++Y+ +TLTT+G+GD
Sbjct: 9 VLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFS--------PQTDFGK 60
Query: 222 IFALIFILFGLAIVAASLNLLVLRFV 247
IF +++I G+ +V ++ L +
Sbjct: 61 IFTILYIFIGIGLVFGFIHKLAVNVQ 86
Score = 51.0 bits (122), Expect = 1e-08
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 78 WKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERL 132
+ + Y++ LTT+GYG +P T GK+FT+ Y +GI L + +
Sbjct: 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNV 85
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 59.0 bits (143), Expect = 5e-10
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 162 VVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYV 221
+ L I G A F EG ++ S+Y+ F+T+ T+G+GD P +
Sbjct: 22 RILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPST--------PLGM 73
Query: 222 IFALIFILFGLAIVAASLNLLVLRFVTMNTEDERR 256
F + I+ G+ A ++ L+ +
Sbjct: 74 YFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMG 108
Score = 52.1 bits (125), Expect = 1e-07
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 78 WKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERL 132
+ S Y+ + T+GYG +P+T G FT+ ++GI V + + E L
Sbjct: 44 ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 98
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 44.1 bits (104), Expect = 1e-05
Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 14/109 (12%)
Query: 185 TYFDSVYYCFITLTTIGFGDMV---ALQKDNALDTKPEYVIFALIFILFGLAIVAASLNL 241
TY ++++ T TT+G+GD+ + + A++ ++ G+
Sbjct: 67 TYPRALWWSVETATTVGYGDLYPVTLWGR-----------LVAVVVMVAGITSFGLVTAA 115
Query: 242 LVLRFVTMNTEDERRDEAEALQAAQGAVRLEGDVITADGSILSGQLGEN 290
L FV + +++ + +AA+ A + L L +N
Sbjct: 116 LATWFVGQEQQQQQQFVRHSEKAAEEAYTRTTRALHERFDRLERMLDDN 164
Score = 42.2 bits (99), Expect = 5e-05
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGI 118
+ +++ TT+GYG P T+ G+L + + GI
Sbjct: 71 ALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGI 106
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 43.7 bits (103), Expect = 1e-05
Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 14/109 (12%)
Query: 185 TYFDSVYYCFITLTTIGFGDMV---ALQKDNALDTKPEYVIFALIFILFGLAIVAASLNL 241
TY ++++ T TT+G+GD+ + + A++ ++ G+
Sbjct: 40 TYPRALWWSVETATTVGYGDLYPVTLWGR-----------LVAVVVMVAGITSFGLVTAA 88
Query: 242 LVLRFVTMNTEDERRDEAEALQAAQGAVRLEGDVITADGSILSGQLGEN 290
L FV E + +AA+ A + L L +N
Sbjct: 89 LATWFVGREQERRGHFVRHSEKAAEEAYTRTTRALHERFDRLERMLDDN 137
Score = 42.2 bits (99), Expect = 3e-05
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGI 118
+ +++ TT+GYG P T+ G+L + + GI
Sbjct: 44 ALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGI 79
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 44.8 bits (105), Expect = 2e-05
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 80 FAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNK 134
F G+F+++ L T+GYG P T+ VG+ + + R +
Sbjct: 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFAR 151
Score = 37.9 bits (87), Expect = 0.004
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 159 LICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKP 218
L V TL +L +G A + + + ++ TL T+G+GDM
Sbjct: 70 LFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHP--------QTV 121
Query: 219 EYVIFALIFILFGLAIVAASLNLLVLRFVTMNTEDERRDEA 259
A + I G++ +A S L+ RF + A
Sbjct: 122 YAHAIATLEIFVGMSGIALSTGLVFARFARPRAKIMFARHA 162
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 41.7 bits (98), Expect = 3e-05
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGI 118
+ +++ TT+GYG P T G+ GI
Sbjct: 44 AIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGI 79
Score = 35.9 bits (83), Expect = 0.003
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 185 TYFDSVYYCFITLTTIGFGDMV---ALQKDNALDTKPEYVIFALIFILFGLAIVA 236
+Y D++++ T TT+G+GD + A + G+ + A
Sbjct: 40 SYPDAIWWSVETATTVGYGDRYPVTEEGR-----------KVAEQVMKAGIEVFA 83
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 3e-05
Identities = 57/357 (15%), Positives = 103/357 (28%), Gaps = 127/357 (35%)
Query: 31 SQTENRRWTTLSDIEKMIMNKYNIS-PDDFKLLETLILKSEPHK---------AGQQW-- 78
+ +R + + KYN+S + L +L+ P K +G+ W
Sbjct: 113 IEQRDRLYNDNQ-----VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 79 -----------KFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFY-----------AMV 116
K ++ + +S P T+ L + Y
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLN-----LKNCNS-PETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 117 GIPLGLVMFQSIGERLNKLSSVVIRKAKRLSGCTEIEATEINLICVVTTLSSLTIAVGAA 176
I L + SI L +L K+K C L+ V+ + +
Sbjct: 222 NIKLRI---HSIQAELRRL-----LKSKPYENC---------LL-VLLNVQNAKA----- 258
Query: 177 AFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKD----NALDTKPEYVIFALIFILFGL 232
W F+ C I LTT + + L I L L
Sbjct: 259 -------WNAFN--LSCKILLTT----------RFKQVTDFLSAATTTHIS-LDHHSMTL 298
Query: 233 AIVAASLNLLVLRFVTMNTEDERRDEAEALQAAQGAVRLEGDVITADGSILSGQLGENNA 292
+LL L+++ +D R E L + SI++ + + A
Sbjct: 299 T-PDEVKSLL-LKYLDCRPQDLPR---EVLTTNPRRL-----------SIIAESIRDGLA 342
Query: 293 VYHNISTTTSMCTCTCNCFRRDSDLQLGPTVSMPVDSLSCDQLSMEEYEQVMEVLMV 349
+ N ++ + +L + S + L EY ++ + L V
Sbjct: 343 TWDN--------------WKHVNCDKLTTIIES-----SLNVLEPAEYRKMFDRLSV 380
Score = 34.1 bits (77), Expect = 0.084
Identities = 42/267 (15%), Positives = 77/267 (28%), Gaps = 102/267 (38%)
Query: 10 SLI---VCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLI 66
SL+ T + S++ L+ + EN + + I++ YNI P F
Sbjct: 415 SLVEKQPKESTISI--PSIYLELKVKLENEY-----ALHRSIVDHYNI-PKTF------- 459
Query: 67 LKSEPHKAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGK--LFTMFYAMVGIPLGLVM 124
+ + + + IG+ H + LF M +
Sbjct: 460 ---DSDDLIPPYLDQYFYSH-------IGH-HLKNIEHPERMTLFRMVF----------- 497
Query: 125 FQSIGERLNKLSSVVIR--KAKRLSGCTEIEATEINLICVVTTLSSLTIAVGAAAFSRYE 182
L+ R + K I + L++L Y+
Sbjct: 498 -------LD------FRFLEQK-------IRHDSTAWNASGSILNTLQ------QLKFYK 531
Query: 183 GWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLA---IVAASL 239
+I DN D K E ++ A++ L + I +
Sbjct: 532 P----------YIC--------------DN--DPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 240 NLLVLRFVTMNTEDERRDEAEALQAAQ 266
+L LR M ++ +EA Q +
Sbjct: 566 DL--LRIALMAEDEAIFEEAHK-QVQR 589
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 42.1 bits (99), Expect = 5e-05
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGI 118
+ +++ TT+GYG P T+ G+ + + GI
Sbjct: 88 ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 123
Score = 39.4 bits (92), Expect = 4e-04
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 14/83 (16%)
Query: 185 TYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYV---IFALIFILFGLAIVAASLNL 241
+Y D++++ T TT+G+GD+ P + A++ ++ G+
Sbjct: 84 SYPDALWWSVETATTVGYGDLY-----------PVTLWGRCVAVVVMVAGITSYGLVFAA 132
Query: 242 LVLRFVTMNTEDERRDEAEALQA 264
+ FV E + +A
Sbjct: 133 VATWFVGREQERRGHFVRHSEKA 155
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 41.2 bits (97), Expect = 6e-05
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGI 118
+ ++A TT+ YG P T+ G+L + + GI
Sbjct: 65 ALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGI 100
Score = 35.8 bits (83), Expect = 0.005
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 14/66 (21%)
Query: 185 TYFDSVYYCFITLTTIGFGDMV---ALQKDNALDTKPEYVIFALIFILFGLAIVAASLNL 241
TY ++++ T TT+ +GD+ + + A++ ++ G+
Sbjct: 61 TYPRALWWACETATTVAYGDLYPVTLWGR-----------LVAVVVMVAGITSFGLVTAA 109
Query: 242 LVLRFV 247
L FV
Sbjct: 110 LATWFV 115
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 43.3 bits (102), Expect = 7e-05
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGI 118
+ ++A L+T GYG + P + G++ M GI
Sbjct: 165 AMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGI 200
Score = 43.3 bits (102), Expect = 7e-05
Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 14/112 (12%)
Query: 185 TYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYV---IFALIFILFGLAIVAASLNL 241
+ ++++ +TL+T G+GD + P+ + A ++ G+ I +
Sbjct: 161 SIPQAMWWAVVTLSTTGYGDTI-----------PQSFAGRVLAGAVMMSGIGIFGLWAGI 209
Query: 242 LVLRFVTMNTEDERRDEAEALQAAQGAVRLEGDVITADGSILSGQLGENNAV 293
L F + + + A +L V+ L + AV
Sbjct: 210 LATGFYQEVRRGDFVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAV 261
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 42.6 bits (101), Expect = 7e-05
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGI 118
+ ++A TT+GYG P T GK+ + + GI
Sbjct: 169 ALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGI 204
Score = 38.0 bits (89), Expect = 0.002
Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 14/55 (25%)
Query: 185 TYFDSVYYCFITLTTIGFGDMV---ALQKDNALDTKPEYVIFALIFILFGLAIVA 236
+ FD++++ +T TT+G+GD+V + K + + +L G++ +
Sbjct: 165 SVFDALWWAVVTATTVGYGDVVPATPIGK-----------VIGIAVMLTGISALT 208
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 43.5 bits (102), Expect = 8e-05
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGI 118
+F++A +TT+GYG P TIGGK+ A+ G+
Sbjct: 379 AFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGV 414
Score = 40.8 bits (95), Expect = 5e-04
Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 14/90 (15%)
Query: 188 DSVYYCFITLTTIGFGDMVALQKDNALDTKPEYV---IFALIFILFGLAIVAASLNLLVL 244
D+ ++ +++TT+G+GDMV P + I + + G+ +A + ++V
Sbjct: 378 DAFWWAVVSMTTVGYGDMV-----------PTTIGGKIVGSLCAIAGVLTIALPVPVIVS 426
Query: 245 RFVTMNTEDERRDEAEALQAAQGAVRLEGD 274
F + +E + ++
Sbjct: 427 NFNYFYHRETEGEEQAQYLQVTSSPKIPSS 456
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 42.7 bits (100), Expect = 1e-04
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 80 FAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLSS 137
F +F+++ + TIGYG P A+ G+ V I R + ++
Sbjct: 83 FTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPTA 140
Score = 37.0 bits (85), Expect = 0.006
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 184 WTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLV 243
++ D+ ++ T+ TIG+G ++ P + L G+ +A + +L+
Sbjct: 81 GSFTDAFFFSVQTMATIGYGKLIP--------IGPLANTLVTLEALCGMLGLAVAASLIY 132
Query: 244 LRFVTMNTEDERRDEA 259
RF
Sbjct: 133 ARFTRPTAGVLFSSRM 148
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 40.9 bits (95), Expect = 3e-04
Identities = 15/68 (22%), Positives = 27/68 (39%)
Query: 67 LKSEPHKAGQQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQ 126
L S P F G+F+++ L T+GYG P T+ VG+ +
Sbjct: 66 LGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATG 125
Query: 127 SIGERLNK 134
++++
Sbjct: 126 CAFIKMSQ 133
Score = 36.6 bits (84), Expect = 0.008
Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 162 VVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYV 221
++ T + +G+A + + + ++ TL T+G+GDM
Sbjct: 55 LLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMH--------PQTVYAH 106
Query: 222 IFALIFILFGLAIVAASLNLLVLRFV 247
A + I G++ +A + ++
Sbjct: 107 WIATLEIFVGMSSIALATGCAFIKMS 132
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.002
Identities = 56/370 (15%), Positives = 96/370 (25%), Gaps = 150/370 (40%)
Query: 52 YNISP---DDF-----KLLETLI---LKSEP-HKAG---QQWKFAGSFYYATTVLTTIGY 96
Y D + L LI L +E G +W L
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW------------LEN--- 221
Query: 97 GHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLSSVVIRKAKRLSGCTEIEATE 156
P+ K + + + PL IG + +L+ V+ +L G T E
Sbjct: 222 ----PSNTPDKDY-LLSIPISCPL-------IG--VIQLAHYVV--TAKLLGFTPGELRS 265
Query: 157 INLICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFIT-LTTIGF------------- 202
+ T S + A A + + W F IT L IG
Sbjct: 266 Y--LKGATGHSQGLVT--AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 203 ---------GD-----MVA------------LQKDNALDTKPEYVIFALI-----FILFG 231
+ M++ + K N+ + V +L+ ++ G
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG 381
Query: 232 LAIVAASLNLLVLRFVTMNTEDERRDEAEA------------------------------ 261
SL L L R+ +A +
Sbjct: 382 P---PQSLYGLNLTL--------RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 262 -LQAAQGAVRLEGDVITADGSILSGQLGENNAVYHNISTTTS--MCTCTCNCFRRDSDLQ 318
L A + D++ + S + + VY T + + + R D
Sbjct: 431 LLVPASD--LINKDLVKNNVSFNAKDIQI--PVYD---TFDGSDLRVLSGSISERIVDCI 483
Query: 319 LGPTVSMPVD 328
+ +PV
Sbjct: 484 ----IRLPVK 489
Score = 34.3 bits (78), Expect = 0.070
Identities = 41/295 (13%), Positives = 72/295 (24%), Gaps = 119/295 (40%)
Query: 47 MIMNKYNISP------D--DFKLLETL------ILKSEPHKAGQQWKFAGSFYYATTVLT 92
M M+ Y S + D +T I+ + P
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL------------------ 1672
Query: 93 TIGYGHSTPNTIGGKLFTMFYAMV--GIPLGLVMFQSIGERLNKLSSVVIRKAKRLSGCT 150
TI +G I M + + G +F+ I E +
Sbjct: 1673 TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT---------FRSEK 1723
Query: 151 E-IEATEINLICVVTTLSSLT----IAVGAAAFSRYEGWTYFDSVYYCFITLTTIGF--- 202
+ AT+ T + AAF + + F
Sbjct: 1724 GLLSATQF------------TQPALTLMEKAAFEDLKSKGLIPADAT---------FAGH 1762
Query: 203 --GDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNL-----LV-LRFVTMNTEDE 254
G EY A LA +A +++ +V R +TM
Sbjct: 1763 SLG---------------EYA--A-------LASLADVMSIESLVEVVFYRGMTMQVAVP 1798
Query: 255 RRDEAE------ALQAAQGAVRLEGDVITADGSILSGQLGE-----NNAVYHNIS 298
R + A+ + A + + + + G N +N+
Sbjct: 1799 RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN----YNVE 1849
Score = 28.9 bits (64), Expect = 3.0
Identities = 52/347 (14%), Positives = 87/347 (25%), Gaps = 136/347 (39%)
Query: 1 MKKQNIRTLSL----IVCTF---TYLLIGASV----FDA-LESQTENRRWTTLSDIEKMI 48
M + R L+L + T AS F+ L TE +D E
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEG----FAADDE--- 53
Query: 49 MNKYNISPDDF--KLLETLILKSEPHKAGQQ--------WKFAGSFYYAT---TVLTTIG 95
+P + K L + EP K GQ +F + + +
Sbjct: 54 ----PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL 109
Query: 96 YGHSTPNTIGGKLFTMFY---AMVGIPLGLVMFQSIGERLNKLSSVVIRKAKRLSGCTEI 152
+ T +L + M P K +S + R G ++
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFD-----------KKSNSALFRAVG--EGNAQL 156
Query: 153 EATEINLICVVTTLSSLTIAVGAAAFSRYEG-----WTYFD------SVYYCFI------ 195
A F G YF+ Y+ +
Sbjct: 157 ----------------------VAIF----GGQGNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 196 ---TLTTI-------------GFGDMVA-LQKDNALDTKP--EYVIFALIFILFGLAIVA 236
TL+ + G +++ L+ P +Y L +
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGL-NILEWLENP---SNTPDKDY-----------LLSIP 235
Query: 237 ASLNLLVLR-----FVTMNTEDERRDEAEALQAAQGAVRLEGDVITA 278
S L+ + VT E +GA ++TA
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLG--FTPGELRSYLKGATGHSQGLVTA 280
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
receptor, metal transport; HET: P8P; 2.45A {Gallus
gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Length = 343
Score = 35.9 bits (82), Expect = 0.014
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 80 FAGSFYYATTVLTTIGYGHS--TPNTIGGKLFTMFYAMVGIPLGLVMF 125
F +F ++ TTIGYG T + ++VG + M
Sbjct: 95 FVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMI 142
Score = 32.8 bits (74), Expect = 0.17
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 185 TYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVL 244
+ + + T TTIG+G + P V ++ + G I + + ++
Sbjct: 94 GFVAAFLFSIETQTTIGYGFRC------VTEECPLAVFMVVVQSIVGCIIDSFMIGAIMA 147
Query: 245 RF 246
+
Sbjct: 148 KM 149
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 34.7 bits (79), Expect = 0.040
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 80 FAGSFYYATTVLTTIGYGHSTP--NTIGGKLFTMFYAMVGIPLGLVMF 125
F +F ++ TTIGYG+ G + + +++G + M
Sbjct: 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMV 139
Score = 33.6 bits (76), Expect = 0.096
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 185 TYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFALIFILFGLAIVAASLNLLVL 244
+ + + T TTIG+G V D PE +I LI + G + A + + +
Sbjct: 91 GFVSAFLFSIETETTIGYGYRV------ITDKCPEGIILLLIQSVLGSIVNAFMVGCMFV 144
Query: 245 RF 246
+
Sbjct: 145 KI 146
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.2
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 13/33 (39%)
Query: 2 KKQNIRTL--SLIVCTFTY-------LLIGASV 25
+KQ ++ L SL + Y L I A++
Sbjct: 18 EKQALKKLQASLKL----YADDSAPALAIKATM 46
>2efv_A Hypothetical protein MJ0366; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.90A {Methanocaldococcus jannaschii DSM2661}
SCOP: a.43.1.12
Length = 92
Score = 26.9 bits (59), Expect = 3.6
Identities = 11/43 (25%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 28 ALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSE 70
A+E++ + +R TL++ E++I+ + S + LL ++K +
Sbjct: 47 AIEAEKKYKRSITLTEEEEVIIQRLGKSAN--LLLNCELVKLD 87
>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A
{Enterobacteria phage P1} SCOP: d.2.1.3
Length = 191
Score = 27.8 bits (61), Expect = 4.3
Identities = 10/73 (13%), Positives = 21/73 (28%), Gaps = 10/73 (13%)
Query: 160 ICVVTTLSSLTIAVGAAAFS--------RYEGWTYFDSVYYCFITLTTIGFGDMVALQKD 211
IC + + ++ + G + EG Y C + T G G+ +
Sbjct: 12 ICAIAVMITIVMGNGNVRTNQAGLELIGNAEGCRR--DPYMCPAGVWTDGIGNTHGVTPG 69
Query: 212 NALDTKPEYVIFA 224
+ +
Sbjct: 70 VRKTDQQIAADWE 82
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling,
nucleocytoplasmic transport, protein transport; HET:
PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Length = 452
Score = 28.3 bits (62), Expect = 4.8
Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 3/76 (3%)
Query: 13 VCTFTYLLIGASVFDALESQTENRRWTTLSDIEKMIMN---KYNISPDDFKLLETLILKS 69
+LI + + ++ L +M M+ + + L+E + L+
Sbjct: 299 ATNIATILIDNGQNEIVCVSFDDGSLILLFKDLEMSMSWDVDNYVYNNSLVLIERVKLQR 358
Query: 70 EPHKAGQQWKFAGSFY 85
E + G Y
Sbjct: 359 EIKSLITLPEQLGKLY 374
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 6.5
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 3/29 (10%)
Query: 194 FITLTTIGFGDMVAL---QKDNALDTKPE 219
F + FG+M A ++ P
Sbjct: 1136 FQEEGSFEFGNMKATSNTLEEFEHGRTPA 1164
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+,
helix-turn-helix, nucleotide-binding, DNA binding, REP
initiation, DNA binding protein; HET: ADP; 2.70A
{Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A*
2hcb_A*
Length = 324
Score = 27.5 bits (62), Expect = 7.0
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 20 LIGASVFDALESQTENRRWTTLSDIEKMIMNKYNISPDDFK 60
LI F+ LE + R L I + + N Y + +D
Sbjct: 210 LIKLKGFEGLERKERKER-DKLMQIVEFVANYYAVKVEDIL 249
>1hlb_A Hemoglobin (deoxy); oxygen transport; HET: HEM; 2.50A {Caudina
arenicola} SCOP: a.1.1.2
Length = 158
Score = 26.7 bits (59), Expect = 7.8
Identities = 6/60 (10%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
Query: 22 GASVFDALESQTENRRWTTLSDIEKMIMNK---YNISPDDFKLLETLILKSEPHKAGQQW 78
V + E L ++ + + D + L +++++ + G +
Sbjct: 75 AIRVSSIMSEYVEELDSDILPELLATLARTHDLNKVGADHYNLFAKVLMEALQAELGSDF 134
>1vjf_A DNA-binding protein, putative; structural genomics, joint center
for S genomics, JCSG, protein structure initiative, PSI;
HET: MSE; 1.62A {Caulobacter crescentus CB15} SCOP:
d.116.1.1
Length = 180
Score = 26.9 bits (59), Expect = 8.2
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 325 MPVDSLSCDQLSMEEYEQVMEVL 347
M D + M+ +
Sbjct: 1 MGSDKIHHHHHHMKTRADLFAFF 23
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.392
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,182,180
Number of extensions: 307163
Number of successful extensions: 778
Number of sequences better than 10.0: 1
Number of HSP's gapped: 757
Number of HSP's successfully gapped: 60
Length of query: 353
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 258
Effective length of database: 4,049,298
Effective search space: 1044718884
Effective search space used: 1044718884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.3 bits)