RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8844
(353 letters)
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 80
Score = 61.3 bits (149), Expect = 7e-13
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 166 LSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKPEYVIFAL 225
L I G A F EG ++ S+Y+ F+T+ T+G+GD + P + F +
Sbjct: 8 LVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSP--------STPLGMYFTV 59
Query: 226 IFILFGLAIVAASLNLLV 243
I+ G+ A ++ L+
Sbjct: 60 TLIVLGIGTFAVAVERLL 77
Score = 53.2 bits (128), Expect = 6e-10
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 78 WKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERL 132
+ S Y+ + T+GYG +P+T G FT+ ++GI V + + E L
Sbjct: 26 ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 80
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Length = 116
Score = 47.3 bits (112), Expect = 1e-07
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Query: 159 LICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKP 218
L V TL +L +G A + + + ++ TL T+G+GDM
Sbjct: 35 LFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMH--------PQTV 86
Query: 219 EYVIFALIFILFGLAIVAASLNLLVLRF 246
A + I G++ +A S L+ RF
Sbjct: 87 YAHAIATLEIFVGMSGIALSTGLVFARF 114
Score = 38.0 bits (88), Expect = 3e-04
Identities = 13/57 (22%), Positives = 23/57 (40%)
Query: 78 WKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNK 134
F G+F+++ L T+GYG P T+ VG+ + + R +
Sbjct: 60 PGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFAR 116
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
188]}
Length = 116
Score = 46.1 bits (109), Expect = 4e-07
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 159 LICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKP 218
L V L +L ++ D+ ++ T+ TIG+G ++ P
Sbjct: 34 LYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLI--------PIGP 85
Query: 219 EYVIFALIFILFGLAIVAASLNLLVLRF 246
+ L G+ +A + +L+ RF
Sbjct: 86 LANTLVTLEALCGMLGLAVAASLIYARF 113
Score = 43.4 bits (102), Expect = 4e-06
Identities = 13/59 (22%), Positives = 22/59 (37%)
Query: 76 QQWKFAGSFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNK 134
+ F +F+++ + TIGYG P A+ G+ V I R +
Sbjct: 57 RPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 115
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 103
Score = 42.6 bits (100), Expect = 5e-06
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 10/98 (10%)
Query: 159 LICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGFGDMVALQKDNALDTKP 218
L+ +V S + + TY ++++ T TT+G+GD+
Sbjct: 14 LLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLY--------PVTL 65
Query: 219 EYVIFALIFILFGLAIVAASLNLLVLRFVTMNTEDERR 256
A++ ++ G+ L FV E ERR
Sbjct: 66 WGRCVAVVVMVAGITSFGLVTAALATWFV--GREQERR 101
Score = 35.7 bits (82), Expect = 0.001
Identities = 10/50 (20%), Positives = 23/50 (46%)
Query: 83 SFYYATTVLTTIGYGHSTPNTIGGKLFTMFYAMVGIPLGLVMFQSIGERL 132
+ +++ TT+GYG P T+ G+ + + GI ++ ++
Sbjct: 44 ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 93
>d1vbga2 c.8.1.1 (A:383-517) Pyruvate phosphate dikinase, central
domain {Maize (Zea mays) [TaxId: 4577]}
Length = 135
Score = 31.5 bits (71), Expect = 0.056
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 233 AIVAASLNLLVLRFVTMNTEDERRDEAEALQAAQGAVRLEGDVITADGS---ILSGQL 287
A+VA + R ++AE L G V EG+ ++ +GS ++ G+
Sbjct: 78 AVVARGWGKCCV----SGCSGIRVNDAEKLVTIGGHVLREGEWLSLNGSTGEVILGKQ 131
>d1kbla2 c.8.1.1 (A:377-509) Pyruvate phosphate dikinase, central
domain {Clostridium symbiosum [TaxId: 1512]}
Length = 133
Score = 29.6 bits (66), Expect = 0.28
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 232 LAIVAASLNLLVLRFVTMNTEDERRDEAEALQAAQGAVRLEGDVITADGSILSGQ--LGE 289
A+VA + + + + +E G EGD I+ DGS +G+ G+
Sbjct: 80 AAVVARGMGTCCV----SGCGEIKINEEAKTFELGGHTFAEGDYISLDGS--TGKIYKGD 133
>d1gnta_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 553
Score = 29.7 bits (67), Expect = 0.59
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 107 KLFTMFYAMVGIPLGLVMFQSIGERLNKLSSVVIRKAKRLSGCTEIEATEI 157
+L+T +VG G K S +I +AK+ EIE I
Sbjct: 325 RLYT--TGVVGYE-GAKHIADRPAGGAKDFSALIAQAKKCPPPVEIETGSI 372
>d1gnla_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 543
Score = 29.4 bits (66), Expect = 0.74
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 102 NTIGGKLFTMFYAMVGIPLGLVMFQSIGERLNKLSSVVIRKAKRLSGCTEIEATEI 157
++ +++T +VG G +K S +I AK TEIE+ EI
Sbjct: 314 DSYKDRVYT--TGIVGFT-GCKHIPG-EIGEHKDFSAIIAHAKTCPAPTEIESGEI 365
>d2efva1 a.43.1.12 (A:6-87) Uncharacterized protein MJ0366
{Methanococcus jannaschii [TaxId: 2190]}
Length = 82
Score = 26.7 bits (59), Expect = 1.3
Identities = 11/43 (25%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 28 ALESQTENRRWTTLSDIEKMIMNKYNISPDDFKLLETLILKSE 70
A+E++ + +R TL++ E++I+ + S + LL ++K +
Sbjct: 42 AIEAEKKYKRSITLTEEEEVIIQRLGKSAN--LLLNCELVKLD 82
>d1vjja4 d.3.1.4 (A:141-461) Transglutaminase catalytic domain
{Human (Homo sapiens), TGase E3 [TaxId: 9606]}
Length = 321
Score = 27.5 bits (61), Expect = 2.4
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 68 KSEPHKAGQQWKFAGSFYYATTVLTTIG 95
P + GQ W FAG T L ++G
Sbjct: 123 GLSPVRYGQCWVFAG---TLNTALRSLG 147
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 57
Score = 23.6 bits (51), Expect = 8.6
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 159 LICVVTTLSSLTIAVGAAAFSRYEGWTYFDSVYYCFITLTTIGF 202
L+ V+ S L + A TY ++++ T TT+G+
Sbjct: 15 LVIVLLAGSYLAVLAERGAPGAQLI-TYPRALWWACETATTVGY 57
>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 137
Score = 25.0 bits (54), Expect = 9.5
Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 7/99 (7%)
Query: 250 NTEDERRDEAEALQAAQGAVRLEGDVITADGSILSGQLGENNAVYHNISTTTSMCTCTCN 309
+ + E +AL+A + G G++ E + +
Sbjct: 10 SYSQRQDHELQALEA------IYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYV 63
Query: 310 CFRRDSDLQLG-PTVSMPVDSLSCDQLSMEEYEQVMEVL 347
P V +D + LS E + L
Sbjct: 64 QVELRVKCPPTYPDVVPEIDLKNAKGLSNESVNLLKSHL 102
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.135 0.392
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,228,256
Number of extensions: 53913
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 19
Length of query: 353
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 267
Effective length of database: 1,226,816
Effective search space: 327559872
Effective search space used: 327559872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)