BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8846
(568 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|B Chain B, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|C Chain C, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|D Chain D, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|E Chain E, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|F Chain F, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETE|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETG|A Chain A, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|B Chain B, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|C Chain C, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|D Chain D, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|E Chain E, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|F Chain F, Glutamate Dehydrogenase Complexed With Gw5074
Length = 501
Score = 244 bits (623), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 112/161 (69%), Positives = 134/161 (83%)
Query: 171 ENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFP 230
++P FF MVE FF R I EDKLVED+K R T E K+ +VRGIL ++PC+H++ +SFP
Sbjct: 5 DDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRGILRIIKPCNHVLSLSFP 64
Query: 231 VRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGG 290
+RRD G +E+I GYRAQHS HRTPCKGGIR+S DVS DEVKAL++LMT+KCA VDVPFGG
Sbjct: 65 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 124
Query: 291 AKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP 331
AKAG+KINPKNY++NELEKITRRFT+ELAKKGFIG VP
Sbjct: 125 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVP 165
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 67/88 (76%)
Query: 60 ENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFP 119
++P FF MVE FF R I EDKLVED+K R T E K+ +VRGIL ++PC+H++ +SFP
Sbjct: 5 DDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRGILRIIKPCNHVLSLSFP 64
Query: 120 VRRDSGDYEIITGYRAQHSTHRTPCKGA 147
+RRD G +E+I GYRAQHS HRTPCKG
Sbjct: 65 IRRDDGSWEVIEGYRAQHSQHRTPCKGG 92
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/81 (70%), Positives = 64/81 (79%), Gaps = 1/81 (1%)
Query: 488 TMERSARAIMKTAMKYNLGHLDINAHACVTGKPINQGGIHGRISATGRGVFHGLENFIME 547
T ER I T +GH DINAHACVTGKPI+QGGIHGRISATGRGVFHG+ENFI E
Sbjct: 171 TGEREMSWIADTYAS-TIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINE 229
Query: 548 ANYMSMVGTTPGWGGKTFIVQ 568
A+YMS++G TPG+G KTF VQ
Sbjct: 230 ASYMSILGMTPGFGDKTFAVQ 250
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 103/199 (51%), Gaps = 63/199 (31%)
Query: 380 PLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAE 439
P LE++KL +GTI+GFP A YEG L + CDI +PAA EK +TK+NA +++AKIIAE
Sbjct: 288 PKELEDFKLQHGTILGFPKAKIYEGSILEVD-CDILIPAASEKQLTKSNAPRVKAKIIAE 346
Query: 440 AAN-----ESVQESLERR-------FGNVGG----------------------------- 458
AN E+ + LER + N GG
Sbjct: 347 GANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSN 406
Query: 459 -RIPVTPSESFQK-------------------RISGASEKDIVHSGLDYTMERSARAIMK 498
+ ++ ES ++ RISGASEKDIVHSGL YTMERSAR IM+
Sbjct: 407 YHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMR 466
Query: 499 TAMKYNLGHLDINAHACVT 517
TAMKYNLG LD+ A V
Sbjct: 467 TAMKYNLG-LDLRTAAYVN 484
>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|B Chain B, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|C Chain C, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|D Chain D, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|E Chain E, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|F Chain F, Structure Of Human Glutamate Dehydrogenase-Apo Form
Length = 505
Score = 242 bits (617), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 110/161 (68%), Positives = 134/161 (83%)
Query: 171 ENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFP 230
++P FF MVE FF R I EDKLVED++ R + E K+ +VRGIL ++PC+H++ +SFP
Sbjct: 9 DDPNFFKMVEGFFDRGASIVEDKLVEDLRTRESEEQKRNRVRGILRIIKPCNHVLSLSFP 68
Query: 231 VRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGG 290
+RRD G +E+I GYRAQHS HRTPCKGGIR+S DVS DEVKAL++LMT+KCA VDVPFGG
Sbjct: 69 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 128
Query: 291 AKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP 331
AKAG+KINPKNY++NELEKITRRFT+ELAKKGFIG VP
Sbjct: 129 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVP 169
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 67/88 (76%)
Query: 60 ENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFP 119
++P FF MVE FF R I EDKLVED++ R + E K+ +VRGIL ++PC+H++ +SFP
Sbjct: 9 DDPNFFKMVEGFFDRGASIVEDKLVEDLRTRESEEQKRNRVRGILRIIKPCNHVLSLSFP 68
Query: 120 VRRDSGDYEIITGYRAQHSTHRTPCKGA 147
+RRD G +E+I GYRAQHS HRTPCKG
Sbjct: 69 IRRDDGSWEVIEGYRAQHSQHRTPCKGG 96
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/81 (70%), Positives = 65/81 (80%), Gaps = 1/81 (1%)
Query: 488 TMERSARAIMKTAMKYNLGHLDINAHACVTGKPINQGGIHGRISATGRGVFHGLENFIME 547
T ER I T +GH DINAHACVTGKPI+QGGIHGRISATGRGVFHG+ENFI E
Sbjct: 175 TGEREMSWIADTYAS-TIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINE 233
Query: 548 ANYMSMVGTTPGWGGKTFIVQ 568
A+YMS++G TPG+G KTF+VQ
Sbjct: 234 ASYMSILGMTPGFGDKTFVVQ 254
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 110/213 (51%), Gaps = 68/213 (31%)
Query: 380 PLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAE 439
P LE++KL +G+I+GFP A PYEG +++ CDI +PAA EK +TK+NA +++AKIIAE
Sbjct: 292 PKELEDFKLQHGSILGFPKAKPYEG-SILEADCDILIPAASEKQLTKSNAPRVKAKIIAE 350
Query: 440 AAN-----ESVQESLERR-------FGNVGG----------------------------- 458
AN E+ + LER + N GG
Sbjct: 351 GANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSN 410
Query: 459 -RIPVTPSESFQK-------------------RISGASEKDIVHSGLDYTMERSARAIMK 498
+ ++ ES ++ RISGASEKDIVHSGL YTMERSAR IM+
Sbjct: 411 YHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMR 470
Query: 499 TAMKYNLGHLDINAHACVTG-----KPINQGGI 526
TAMKYNLG LD+ A V K N+ G+
Sbjct: 471 TAMKYNLG-LDLRTAAYVNAIEKVFKVYNEAGV 502
>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MVO|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVQ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3QMU|A Chain A, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|B Chain B, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|C Chain C, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|D Chain D, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|E Chain E, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|F Chain F, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|G Chain G, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|H Chain H, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|I Chain I, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|J Chain J, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|K Chain K, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|L Chain L, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
Length = 501
Score = 242 bits (617), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 111/161 (68%), Positives = 133/161 (82%)
Query: 171 ENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFP 230
++P FF MVE FF R I EDKLVED+K R T E K+ +VR IL ++PC+H++ +SFP
Sbjct: 5 DDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFP 64
Query: 231 VRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGG 290
+RRD G +E+I GYRAQHS HRTPCKGGIR+S DVS DEVKAL++LMT+KCA VDVPFGG
Sbjct: 65 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 124
Query: 291 AKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP 331
AKAG+KINPKNY++NELEKITRRFT+ELAKKGFIG VP
Sbjct: 125 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVP 165
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 52/88 (59%), Positives = 66/88 (75%)
Query: 60 ENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFP 119
++P FF MVE FF R I EDKLVED+K R T E K+ +VR IL ++PC+H++ +SFP
Sbjct: 5 DDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFP 64
Query: 120 VRRDSGDYEIITGYRAQHSTHRTPCKGA 147
+RRD G +E+I GYRAQHS HRTPCKG
Sbjct: 65 IRRDDGSWEVIEGYRAQHSQHRTPCKGG 92
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/81 (70%), Positives = 65/81 (80%), Gaps = 1/81 (1%)
Query: 488 TMERSARAIMKTAMKYNLGHLDINAHACVTGKPINQGGIHGRISATGRGVFHGLENFIME 547
T ER I T +GH DINAHACVTGKPI+QGGIHGRISATGRGVFHG+ENFI E
Sbjct: 171 TGEREMSWIADTYAS-TIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINE 229
Query: 548 ANYMSMVGTTPGWGGKTFIVQ 568
A+YMS++G TPG+G KTF+VQ
Sbjct: 230 ASYMSILGMTPGFGDKTFVVQ 250
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 103/198 (52%), Gaps = 63/198 (31%)
Query: 380 PLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAE 439
P LE++KL +GTI+GFP A YEG L + CDI +PAA EK +TK+NA +++AKIIAE
Sbjct: 288 PKELEDFKLQHGTILGFPKAKIYEGSILEVD-CDILIPAASEKQLTKSNAPRVKAKIIAE 346
Query: 440 AAN-----ESVQESLERR-------FGNVGG----------------------------- 458
AN E+ + LER + N GG
Sbjct: 347 GANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSN 406
Query: 459 -RIPVTPSESFQK-------------------RISGASEKDIVHSGLDYTMERSARAIMK 498
+ ++ ES ++ RISGASEKDIVHSGL YTMERSAR IM+
Sbjct: 407 YHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMR 466
Query: 499 TAMKYNLGHLDINAHACV 516
TAMKYNLG LD+ A V
Sbjct: 467 TAMKYNLG-LDLRTAAYV 483
>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|B Chain B, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|C Chain C, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|D Chain D, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|E Chain E, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|F Chain F, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
Length = 496
Score = 241 bits (615), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 110/160 (68%), Positives = 133/160 (83%)
Query: 172 NPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPV 231
+P FF MVE FF R I EDKLVED++ R + E K+ +VRGIL ++PC+H++ +SFP+
Sbjct: 1 DPNFFKMVEGFFDRGASIVEDKLVEDLRTRESEEQKRNRVRGILRIIKPCNHVLSLSFPI 60
Query: 232 RRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGA 291
RRD G +E+I GYRAQHS HRTPCKGGIR+S DVS DEVKAL++LMT+KCA VDVPFGGA
Sbjct: 61 RRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGA 120
Query: 292 KAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP 331
KAG+KINPKNY++NELEKITRRFT+ELAKKGFIG VP
Sbjct: 121 KAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVP 160
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 61 NPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPV 120
+P FF MVE FF R I EDKLVED++ R + E K+ +VRGIL ++PC+H++ +SFP+
Sbjct: 1 DPNFFKMVEGFFDRGASIVEDKLVEDLRTRESEEQKRNRVRGILRIIKPCNHVLSLSFPI 60
Query: 121 RRDSGDYEIITGYRAQHSTHRTPCKGA 147
RRD G +E+I GYRAQHS HRTPCKG
Sbjct: 61 RRDDGSWEVIEGYRAQHSQHRTPCKGG 87
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/81 (70%), Positives = 65/81 (80%), Gaps = 1/81 (1%)
Query: 488 TMERSARAIMKTAMKYNLGHLDINAHACVTGKPINQGGIHGRISATGRGVFHGLENFIME 547
T ER I T +GH DINAHACVTGKPI+QGGIHGRISATGRGVFHG+ENFI E
Sbjct: 166 TGEREMSWIADTYAS-TIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINE 224
Query: 548 ANYMSMVGTTPGWGGKTFIVQ 568
A+YMS++G TPG+G KTF+VQ
Sbjct: 225 ASYMSILGMTPGFGDKTFVVQ 245
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 109/213 (51%), Gaps = 68/213 (31%)
Query: 380 PLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAE 439
P LE++KL +G+I+GFP A PYEG +++ CDI +PAA EK +TK+NA +++AKIIAE
Sbjct: 283 PKELEDFKLQHGSILGFPKAKPYEG-SILEADCDILIPAASEKQLTKSNAPRVKAKIIAE 341
Query: 440 AAN-----ESVQESLERR-------FGNVGG----------------------------- 458
AN E+ + LER + N GG
Sbjct: 342 GANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSN 401
Query: 459 -RIPVTPSESFQK-------------------RISGASEKDIVHSGLDYTMERSARAIMK 498
+ ++ ES ++ RISGASEKDIVHSGL YTME SAR IM+
Sbjct: 402 YHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMEASARQIMR 461
Query: 499 TAMKYNLGHLDINAHACVTG-----KPINQGGI 526
TAMKYNLG LD+ A V K N+ G+
Sbjct: 462 TAMKYNLG-LDLRTAAYVNAIEKVFKVYNEAGV 493
>pdb|1HWY|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWZ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
Length = 501
Score = 238 bits (608), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 110/168 (65%), Positives = 133/168 (79%)
Query: 171 ENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFP 230
++P FF MVE FF R I EDKLVED+K R T E K+ +VRGIL ++PC+H++ +SFP
Sbjct: 5 DDPNFFKMVEGFFDRGASIVEDKLVEDLKTRQTQEQKRNRVRGILRIIKPCNHVLSLSFP 64
Query: 231 VRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGG 290
+RRD G +E+I GYRAQHS RTPCKGGIR+S DVS DEVKAL++LMT+KCA VDVPFGG
Sbjct: 65 IRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 124
Query: 291 AKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPGARAREG 338
AKAG+KINPKNY++ +LEKITRRFT+ELAKKGFIG VP G
Sbjct: 125 AKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPAPNMSTG 172
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 52/88 (59%), Positives = 66/88 (75%)
Query: 60 ENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFP 119
++P FF MVE FF R I EDKLVED+K R T E K+ +VRGIL ++PC+H++ +SFP
Sbjct: 5 DDPNFFKMVEGFFDRGASIVEDKLVEDLKTRQTQEQKRNRVRGILRIIKPCNHVLSLSFP 64
Query: 120 VRRDSGDYEIITGYRAQHSTHRTPCKGA 147
+RRD G +E+I GYRAQHS RTPCKG
Sbjct: 65 IRRDDGSWEVIEGYRAQHSHQRTPCKGG 92
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/81 (69%), Positives = 63/81 (77%), Gaps = 1/81 (1%)
Query: 488 TMERSARAIMKTAMKYNLGHLDINAHACVTGKPINQGGIHGRISATGRGVFHGLENFIME 547
T ER I T +GH DINAHACVTGKPI+QGGIHGRISATGRGVFHG+ENFI
Sbjct: 171 TGEREMSWIADTYAS-TIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFIEN 229
Query: 548 ANYMSMVGTTPGWGGKTFIVQ 568
A+YMS++G TPG+G KTF VQ
Sbjct: 230 ASYMSILGMTPGFGDKTFAVQ 250
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 96/199 (48%), Gaps = 63/199 (31%)
Query: 380 PLALEEYKLDNGTIVGFPGA---------------VPYEGE------------------- 405
P LE++KL +GTI+GFP A +P E
Sbjct: 288 PKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEG 347
Query: 406 ----------------NLMYEPCDIFVPAAVEKV----ITKNNAHKIQAKIIAEAANES- 444
N+M P D+++ A V I KN H ++ + +S
Sbjct: 348 ANGPTTPQADKIFLERNIMVIP-DLYLNAGGVTVSYFQILKNLNHVSYGRLTFKYERDSN 406
Query: 445 ------VQESLERRFGNVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMK 498
VQESLER+FG GG IP+ P+ FQ RISGASEKDIVHSGL YTMERSAR IM+
Sbjct: 407 YHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMR 466
Query: 499 TAMKYNLGHLDINAHACVT 517
TAMKYNLG LD+ A V
Sbjct: 467 TAMKYNLG-LDLRTAAYVN 484
>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|G Chain G, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|H Chain H, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|I Chain I, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|J Chain J, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|K Chain K, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|L Chain L, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NR7|A Chain A, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|B Chain B, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|C Chain C, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|D Chain D, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|E Chain E, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|F Chain F, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|G Chain G, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|H Chain H, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|I Chain I, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|J Chain J, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|K Chain K, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|L Chain L, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
Length = 496
Score = 238 bits (606), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 109/160 (68%), Positives = 132/160 (82%)
Query: 172 NPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPV 231
+P FF MVE FF R I EDKLVED++ R + E K+ +VRGIL ++PC+H++ +SFP+
Sbjct: 1 DPNFFKMVEGFFDRGASIVEDKLVEDLRTRESEEQKRNRVRGILRIIKPCNHVLSLSFPI 60
Query: 232 RRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGA 291
RRD G +E+I GYRAQHS RTPCKGGIR+S DVS DEVKAL++LMT+KCA VDVPFGGA
Sbjct: 61 RRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGA 120
Query: 292 KAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP 331
KAG+KINPKNY++NELEKITRRFT+ELAKKGFIG VP
Sbjct: 121 KAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVP 160
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/81 (70%), Positives = 65/81 (80%), Gaps = 1/81 (1%)
Query: 488 TMERSARAIMKTAMKYNLGHLDINAHACVTGKPINQGGIHGRISATGRGVFHGLENFIME 547
T ER I T +GH DINAHACVTGKPI+QGGIHGRISATGRGVFHG+ENFI E
Sbjct: 166 TGEREMSWIADTYAS-TIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINE 224
Query: 548 ANYMSMVGTTPGWGGKTFIVQ 568
A+YMS++G TPG+G KTF+VQ
Sbjct: 225 ASYMSILGMTPGFGDKTFVVQ 245
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 65/87 (74%)
Query: 61 NPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPV 120
+P FF MVE FF R I EDKLVED++ R + E K+ +VRGIL ++PC+H++ +SFP+
Sbjct: 1 DPNFFKMVEGFFDRGASIVEDKLVEDLRTRESEEQKRNRVRGILRIIKPCNHVLSLSFPI 60
Query: 121 RRDSGDYEIITGYRAQHSTHRTPCKGA 147
RRD G +E+I GYRAQHS RTPCKG
Sbjct: 61 RRDDGSWEVIEGYRAQHSHQRTPCKGG 87
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 110/213 (51%), Gaps = 68/213 (31%)
Query: 380 PLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAE 439
P LE++KL +G+I+GFP A PYEG +++ CDI +PAA EK +TK+NA +++AKIIAE
Sbjct: 283 PKELEDFKLQHGSILGFPKAKPYEG-SILEADCDILIPAASEKQLTKSNAPRVKAKIIAE 341
Query: 440 AAN-----ESVQESLERR-------FGNVGG----------------------------- 458
AN E+ + LER + N GG
Sbjct: 342 GANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSN 401
Query: 459 -RIPVTPSESFQK-------------------RISGASEKDIVHSGLDYTMERSARAIMK 498
+ ++ ES ++ RISGASEKDIVHSGL YTMERSAR IM+
Sbjct: 402 YHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMR 461
Query: 499 TAMKYNLGHLDINAHACVTG-----KPINQGGI 526
TAMKYNLG LD+ A V K N+ G+
Sbjct: 462 TAMKYNLG-LDLRTAAYVNAIEKVFKVYNEAGV 493
>pdb|1B3B|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
Length = 415
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 75/109 (68%), Gaps = 2/109 (1%)
Query: 223 HIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCA 282
++ + FPVR D G E+ TGYR QH+ R P KGGIR+ DV+ DEVKAL+ MT+K A
Sbjct: 35 RVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVKALAFWMTWKTA 94
Query: 283 CVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP 331
+D+PFGG K G++++PK S NELE+++RRF E+ + IG + +P
Sbjct: 95 VMDLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEI--QVIIGPYNDIP 141
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 383 LEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAAN 442
L YK ++GT+V +P E L+ DI VPAA+E I NA +I+AK + E AN
Sbjct: 257 LIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGAN 316
Query: 443 ----ESVQESLERR--------FGNVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTME 490
E L RR N GG + V+ E Q S + D V + L+ M+
Sbjct: 317 GPTTPEADEILSRRGILVVPDILANAGG-VTVSYFEWVQDLQSFFWDLDQVRNALEKMMK 375
Query: 491 RSARAIMKTAMKYNL 505
++ +MK KYN+
Sbjct: 376 KAFNDVMKVKEKYNV 390
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 112 HIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGA 147
++ + FPVR D G E+ TGYR QH+ R P KG
Sbjct: 35 RVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGG 70
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 504 NLGHLDINAHACVTGKPINQGGIHGRISATGRGV 537
N+GH VTGKP+ GG GR ATGRGV
Sbjct: 162 NVGH---TVLGIVTGKPVELGGSKGREEATGRGV 192
>pdb|1B26|A Chain A, Glutamate Dehydrogenase
pdb|1B26|B Chain B, Glutamate Dehydrogenase
pdb|1B26|C Chain C, Glutamate Dehydrogenase
pdb|1B26|D Chain D, Glutamate Dehydrogenase
pdb|1B26|E Chain E, Glutamate Dehydrogenase
pdb|1B26|F Chain F, Glutamate Dehydrogenase
Length = 416
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 75/109 (68%), Gaps = 2/109 (1%)
Query: 223 HIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCA 282
++ + FPVR D G E+ TGYR QH+ R P KGGIR+ DV+ DEVKAL+ MT+K A
Sbjct: 36 RVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVKALAFWMTWKTA 95
Query: 283 CVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP 331
+++PFGG K G++++PK S NELE+++RRF E+ + IG + +P
Sbjct: 96 VMNLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEI--QVIIGPYNDIP 142
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 13/135 (9%)
Query: 383 LEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAAN 442
L YK ++GT+V +P E L+ DI VPAA+E I NA +I+AK + E AN
Sbjct: 258 LIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGAN 317
Query: 443 ----ESVQESLERR--------FGNVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTME 490
E L RR N GG + V+ E Q S + D V + L+ M+
Sbjct: 318 GPTTPEADEILSRRGILVVPDILANAGG-VTVSYFEWVQDLQSFFWDLDQVRNALEKMMK 376
Query: 491 RSARAIMKTAMKYNL 505
+ +MK KYN+
Sbjct: 377 GAFNDVMKVKEKYNV 391
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 112 HIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGA 147
++ + FPVR D G E+ TGYR QH+ R P KG
Sbjct: 36 RVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGG 71
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 504 NLGHLDINAHACVTGKPINQGGIHGRISATGRGV 537
N+GH VTGKP+ GG GR ATGRGV
Sbjct: 163 NVGH---TVLGIVTGKPVELGGSKGREEATGRGV 193
>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|B Chain B, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|C Chain C, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|D Chain D, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|E Chain E, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|F Chain F, Glutamate Dehydrogenase From Thermococcus Litoralis
Length = 418
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 124/284 (43%), Gaps = 64/284 (22%)
Query: 223 HIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCA 282
I+E+S PV D G ++ TG+R Q++ R P KGGIR+ + + VKAL+A MT+K A
Sbjct: 35 RIVEVSIPVEMDDGSVKVFTGFRVQYNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTA 94
Query: 283 CVDVPFGGAKAGIKINPKNYSE-------------------------------------- 304
+D+P+GG K G+ NPK S+
Sbjct: 95 VMDLPYGGGKGGVICNPKEMSDREKERLARGYVRAIYDVISPYTDIPAPDVYTNPQIMAW 154
Query: 305 --NELEKITRR----FTLELAKKGFIGEFKAVPGARAREGNVTFN-----LLFHYKFSS- 352
+E E I+RR F + K +G A A AR + T L K +
Sbjct: 155 MMDEYETISRRKDPSFGVITGKPPSVGGIVARMDATARGASYTVREAAKALGMDLKGKTI 214
Query: 353 -----GPVSMYLPQIWVQEKGKCPGLPTHTR----KPLALEE-----YKLDNGTIVGFPG 398
G Y+ +I +E G + T+ P L +K G++ FPG
Sbjct: 215 AIQGYGNAGYYMAKIMSEEYGMKVVAVSDTKGGIYNPDGLNADEVLAWKKKTGSVKDFPG 274
Query: 399 AVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAAN 442
A E L+ D+ P+A+E+VITK NA I+AKI+AE AN
Sbjct: 275 ATNITNEELLELEVDVLAPSAIEEVITKKNADNIKAKIVAELAN 318
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 112 HIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKG 146
I+E+S PV D G ++ TG+R Q++ R P KG
Sbjct: 35 RIVEVSIPVEMDDGSVKVFTGFRVQYNWARGPTKG 69
>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|F Chain F, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|C Chain C, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|D Chain D, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 419
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 223 HIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCA 282
++ +S PV D G I GYR H R P KGG+R V+ + L+A MT K A
Sbjct: 44 RLVTLSLPVVMDDGKVRIFQGYRVVHDIARGPAKGGVRLDPGVTLGQTAGLAAWMTLKAA 103
Query: 283 CVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIG 325
D+PFGGA GI ++PK S ELE++ RR+T EL G IG
Sbjct: 104 VYDLPFGGAAGGIAVDPKGLSPQELERLVRRYTAELV--GLIG 144
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 112 HIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGAT 148
++ +S PV D G I GYR H R P KG
Sbjct: 44 RLVTLSLPVVMDDGKVRIFQGYRVVHDIARGPAKGGV 80
>pdb|2TMG|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
Length = 415
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 74/109 (67%), Gaps = 2/109 (1%)
Query: 223 HIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCA 282
++ + FPVR D G E+ TGYR QH+ R P KGGIR+ DV+ DEVKAL+ MT+K A
Sbjct: 35 RVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVKALAFWMTWKTA 94
Query: 283 CVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP 331
+++PFGG K G++++PK S ELE+++RRF E+ + IG + +P
Sbjct: 95 VMNLPFGGGKGGVRVDPKKLSRRELERLSRRFFREI--QVIIGPYNDIP 141
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 13/135 (9%)
Query: 383 LEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAAN 442
L YK ++GT+V +P E L+ DI VPAA+E I NA +I+AK + E AN
Sbjct: 257 LIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGAN 316
Query: 443 ----ESVQESLERR--------FGNVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTME 490
E L RR N GG + V+ E Q S + D V + L+ M+
Sbjct: 317 GPTTPEADEILSRRGILVVPDILANAGG-VTVSYFEWVQDLQSFFWDLDQVRNALEKMMK 375
Query: 491 RSARAIMKTAMKYNL 505
+ +MK KYN+
Sbjct: 376 GAFNDVMKVKEKYNV 390
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 112 HIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGA 147
++ + FPVR D G E+ TGYR QH+ R P KG
Sbjct: 35 RVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGG 70
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 504 NLGHLDINAHACVTGKPINQGGIHGRISATGRGV 537
N+GH VTGKP+ GG GR ATGRGV
Sbjct: 162 NVGH---TVLGIVTGKPVELGGSKGREEATGRGV 192
>pdb|1EUZ|A Chain A, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|B Chain B, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|C Chain C, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|D Chain D, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|E Chain E, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|F Chain F, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
Length = 419
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 223 HIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCA 282
I+E+S P+ D G ++ TG+R QH+ R P KGGIR+ + VKAL+ MT+K A
Sbjct: 36 RIVEVSVPIEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPAETLSTVKALATWMTWKVA 95
Query: 283 CVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP 331
VD+P+GG K GI +NPK SE E E++ R + A IG + +P
Sbjct: 96 VVDLPYGGGKGGIIVNPKELSEREQERLARAYI--RAVYDVIGPWTDIP 142
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 380 PLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAE 439
P + ++K ++G++ FPGA E L+ D+ PAA+E+VIT+ NA I+AKI+AE
Sbjct: 257 PDEVLKWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITEKNADNIKAKIVAE 316
Query: 440 AANESV 445
AN V
Sbjct: 317 VANGPV 322
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 112 HIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKG 146
I+E+S P+ D G ++ TG+R QH+ R P KG
Sbjct: 36 RIVEVSVPIEMDDGSVKVFTGFRVQHNWARGPTKG 70
>pdb|3K92|A Chain A, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|B Chain B, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|C Chain C, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|D Chain D, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|E Chain E, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|F Chain F, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
Length = 424
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 71/114 (62%), Gaps = 2/114 (1%)
Query: 218 MQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALM 277
M+ ++ + PV+ D+G ++ TGYR+QH+ P KGG+RF +V+ ++VKALS M
Sbjct: 42 MKEPQRMLTVRIPVKMDNGSVKVFTGYRSQHNDAVGPTKGGVRFHPEVNEEKVKALSIWM 101
Query: 278 TFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP 331
T KC ++P+GG K GI +P+ S ELE+++R + +++ +G K +P
Sbjct: 102 TLKCGIANLPYGGGKGGIICDPRTMSFGELERLSRGYVRAISQ--IVGPTKDIP 153
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 405 ENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAAN 442
E L+ + CDI VPAA+ IT NAH IQA I+ E AN
Sbjct: 289 EELLEKDCDILVPAAISNQITAKNAHNIQASIVVERAN 326
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 107 MQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGA 147
M+ ++ + PV+ D+G ++ TGYR+QH+ P KG
Sbjct: 42 MKEPQRMLTVRIPVKMDNGSVKVFTGYRSQHNDAVGPTKGG 82
>pdb|1GTM|A Chain A, Structure Of Glutamate Dehydrogenase
pdb|1GTM|B Chain B, Structure Of Glutamate Dehydrogenase
pdb|1GTM|C Chain C, Structure Of Glutamate Dehydrogenase
Length = 419
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 61/92 (66%)
Query: 223 HIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCA 282
I+E++ PV D G ++ TG+R QH+ R P KGGIR+ + + VKAL+A MT+K A
Sbjct: 35 RIVEVTIPVEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTA 94
Query: 283 CVDVPFGGAKAGIKINPKNYSENELEKITRRF 314
+D+P+GG K GI ++PK S+ E E++ R +
Sbjct: 95 VMDLPYGGGKGGIIVDPKKLSDREKERLARGY 126
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 40/61 (65%)
Query: 385 EYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAANES 444
++K ++G++ FPGA E L+ D+ PAA+E+VITK NA I+AKI+AE AN
Sbjct: 262 KWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITKKNADNIKAKIVAEVANGP 321
Query: 445 V 445
V
Sbjct: 322 V 322
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 112 HIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKG 146
I+E++ PV D G ++ TG+R QH+ R P KG
Sbjct: 35 RIVEVTIPVEMDDGSVKVFTGFRVQHNWARGPTKG 69
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 512 AHACVTGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTT 557
A +TGKP++ GG GRI AT RG + + + ++ G T
Sbjct: 169 AFGIITGKPLSIGGSLGRIEATARGASYTIREAAKVLGWDTLKGKT 214
>pdb|3K8Z|A Chain A, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|B Chain B, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|C Chain C, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|D Chain D, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|E Chain E, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|F Chain F, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
Length = 423
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 68/108 (62%), Gaps = 3/108 (2%)
Query: 224 IIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCAC 283
++ + PVR D G +I TGYRA H+ P KGGIRF +V+ EVKALS M+ KC
Sbjct: 48 LLTVKIPVRMDDGSVKIFTGYRA-HNDSVGPTKGGIRFHPNVTEKEVKALSIWMSLKCGI 106
Query: 284 VDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP 331
+D+P+GG K GI +P++ S ELE+++R + +++ +G K VP
Sbjct: 107 IDLPYGGGKGGIVCDPRDMSFRELERLSRGYVRAISQ--IVGPTKDVP 152
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 405 ENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAAN 442
+ L+ CDI VPAA+E IT+ NAH I+AKI+ EAAN
Sbjct: 288 QELLELDCDILVPAAIENQITEENAHNIRAKIVVEAAN 325
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 509 DINAHACVTGKPINQGGIHGRISATGRGV 537
+ N+ +TGKP+ GG HGR SAT +GV
Sbjct: 175 EFNSPGFITGKPLVLGGSHGRESATAKGV 203
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 113 IIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGA 147
++ + PVR D G +I TGYRA H+ P KG
Sbjct: 48 LLTVKIPVRMDDGSVKIFTGYRA-HNDSVGPTKGG 81
>pdb|2YFQ|A Chain A, Crystal Structure Of Glutamate Dehydrogenase From
Peptoniphilus Asaccharolyticus
pdb|2YFQ|B Chain B, Crystal Structure Of Glutamate Dehydrogenase From
Peptoniphilus Asaccharolyticus
Length = 421
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 16/161 (9%)
Query: 223 HIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCA 282
+IEIS PV+ D G ++ G+R+ HS+ P KGG+RF +V+ DEVKALS MTFK
Sbjct: 37 RVIEISIPVKMDDGTVKVFKGWRSAHSSAVGPSKGGVRFHPNVNMDEVKALSLWMTFKGG 96
Query: 283 CVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPGARAREGNVTF 342
+ +P+GG K GI ++P SE ELE+++R + L K ++G+ +P
Sbjct: 97 ALGLPYGGGKGGICVDPAELSERELEQLSRGWVRGLYK--YLGDRIDIPAPDVN------ 148
Query: 343 NLLFHYKFSSGPVSMYLPQIWVQEKGKCPGLPTHTRKPLAL 383
++G + + +V+ G+ + T T KP+A
Sbjct: 149 --------TNGQIMSWFVDEYVKLNGERMDIGTFTGKPVAF 181
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%)
Query: 383 LEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAAN 442
L YK N T++GFPGA E + DI VPAA+E VIT A I AK++ EAAN
Sbjct: 264 LLAYKEANKTLIGFPGAERITDEEFWTKEYDIIVPAALENVITGERAKTINAKLVCEAAN 323
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 112 HIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGAT 148
+IEIS PV+ D G ++ G+R+ HS+ P KG
Sbjct: 37 RVIEISIPVKMDDGTVKVFKGWRSAHSSAVGPSKGGV 73
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 501 MKYNLGHLDINAHACVTGKPINQGGIHGRISATGRGV 537
+K N +DI TGKP+ GG GR ATG GV
Sbjct: 162 VKLNGERMDI---GTFTGKPVAFGGSEGRNEATGFGV 195
>pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|B Chain B, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|C Chain C, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|D Chain D, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|E Chain E, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|F Chain F, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
Length = 421
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 11/129 (8%)
Query: 212 RGILLGMQPCD---------HIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFS 262
+G+ LG P D ++ ++ PVR D G +E+ GYR QH P KGG+RF
Sbjct: 16 KGVELGGFPEDFYKILSRPRRVLIVNIPVRLDGGGFEVFEGYRVQHCDVLGPYKGGVRFH 75
Query: 263 DDVSRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKG 322
+V+ + AL+ LMT K + +P+GGAK ++++PK S+ ELE+++R + +A
Sbjct: 76 PEVTLADDVALAILMTLKNSLAGLPYGGAKGAVRVDPKKLSQRELEELSRGYARAIAP-- 133
Query: 323 FIGEFKAVP 331
IG+ +P
Sbjct: 134 LIGDVVDIP 142
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 412 CDIFVPAAVEKVITKNNAHKIQAKIIAEAANESVQESLER 451
DIFVPAA+E VI +NA ++A+++ E AN ER
Sbjct: 292 VDIFVPAAIENVIRGDNAGLVKARLVVEGANGPTTPEAER 331
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 101 RGILLGMQPCD---------HIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGAT 148
+G+ LG P D ++ ++ PVR D G +E+ GYR QH P KG
Sbjct: 16 KGVELGGFPEDFYKILSRPRRVLIVNIPVRLDGGGFEVFEGYRVQHCDVLGPYKGGV 72
>pdb|3AOE|A Chain A, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|B Chain B, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 424
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 61/96 (63%)
Query: 223 HIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCA 282
++ + PVR D G GYR H+T R P KGG+R+ +V+ EV AL+ MT K A
Sbjct: 45 RVLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTLSEVMALAGWMTIKNA 104
Query: 283 CVDVPFGGAKAGIKINPKNYSENELEKITRRFTLEL 318
V +P+GG K GI+++P+ S ELE++TRR+T E+
Sbjct: 105 AVGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEI 140
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 380 PLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAE 439
P L + + G + G+P A P + P + VPAA+EK IT+ NA +I+A+I+AE
Sbjct: 263 PYDLLRHVQEFGGVRGYPKAEPLPAADFWGLPVEFLVPAALEKQITEQNAWRIRARIVAE 322
Query: 440 AAN 442
AN
Sbjct: 323 GAN 325
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 488 TMERSARAIMKTAMKYNLGHLDINAHACVTGKPINQGGIHGRISATGRGVF 538
T ER +M T N+G VTGKPI GG GR ATGRGVF
Sbjct: 157 TGEREMAWMMDT-YSMNVGR---TVPGVVTGKPIALGGSLGRRDATGRGVF 203
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 112 HIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKG 146
++ + PVR D G GYR H+T R P KG
Sbjct: 45 RVLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKG 79
>pdb|3AOG|A Chain A, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|B Chain B, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|C Chain C, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|D Chain D, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|E Chain E, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|F Chain F, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|G Chain G, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|H Chain H, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|I Chain I, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|J Chain J, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|K Chain K, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|L Chain L, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
Length = 440
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 61/96 (63%)
Query: 223 HIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCA 282
++ + PVR D G GYR H+T R P KGG+R+ +V+ EV AL+ MT K A
Sbjct: 61 RVLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTLSEVMALAGWMTIKNA 120
Query: 283 CVDVPFGGAKAGIKINPKNYSENELEKITRRFTLEL 318
V +P+GG K GI+++P+ S ELE++TRR+T E+
Sbjct: 121 AVGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEI 156
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 380 PLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAE 439
P L + + G + G+P A P + P + VPAA+EK IT+ NA +I+A+I+AE
Sbjct: 279 PYDLLRHVQEFGGVRGYPKAEPLPAADFWGLPVEFLVPAALEKQITEQNAWRIRARIVAE 338
Query: 440 AAN 442
AN
Sbjct: 339 GAN 341
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 488 TMERSARAIMKTAMKYNLGHLDINAHACVTGKPINQGGIHGRISATGRGVF 538
T ER +M T N+G VTGKPI GG GR ATGRGVF
Sbjct: 173 TGEREMAWMMDT-YSMNVGR---TVPGVVTGKPIALGGSLGRRDATGRGVF 219
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 112 HIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGAT 148
++ + PVR D G GYR H+T R P KG
Sbjct: 61 RVLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGV 97
>pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|B Chain B, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|C Chain C, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|D Chain D, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|E Chain E, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|F Chain F, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
Length = 456
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 213 GILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKA 272
G+L + + +I+ P D G++++ G+R Q+++ P KGG+RF V+ +K
Sbjct: 56 GVLENIAEPERVIQFRVPWINDKGEHKMNRGFRVQYNSVLGPYKGGLRFHPAVNLSVIKF 115
Query: 273 LSALMTFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPG 332
L FK + +P GG K G +PK SENE+ K + F L + +IG VP
Sbjct: 116 LGFEQIFKNSLTTLPMGGGKGGSDFDPKGKSENEILKFCQSFMTNLFR--YIGPNTDVPA 173
Query: 333 ARAREGNVTFNLLF-HYK 349
G LF YK
Sbjct: 174 GDIGVGGREIGYLFGQYK 191
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 513 HACVTGKPINQGGIHGRISATGRGVFHGLENFIMEAN 549
+TGK I GG + R ATG GV + EN + + N
Sbjct: 198 EGVLTGKNIKWGGSNIRAEATGYGVVYFAENVLKDLN 234
>pdb|1HRD|A Chain A, Glutamate Dehydrogenase
pdb|1HRD|B Chain B, Glutamate Dehydrogenase
pdb|1HRD|C Chain C, Glutamate Dehydrogenase
pdb|1BGV|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 222 DHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKC 281
+ +IE P D+G + TGYR Q + P KGG+RF+ V+ +K L FK
Sbjct: 55 ERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKD 114
Query: 282 ACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP----GARARE 337
+ +P GGAK G +P S+ E+ + + F EL + IG VP G ARE
Sbjct: 115 SLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRH--IGPDIDVPAGDLGVGARE 172
>pdb|2YFH|A Chain A, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|B Chain B, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|C Chain C, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|D Chain D, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|E Chain E, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|F Chain F, Structure Of A Chimeric Glutamate Dehydrogenase
Length = 448
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%)
Query: 222 DHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKC 281
+ +IE P D+G + TGYR Q + P KGG+RF+ V+ +K L FK
Sbjct: 56 ERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKD 115
Query: 282 ACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAK 320
+ +P GGAK G +P S+ E+ + + F EL +
Sbjct: 116 SLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYR 154
>pdb|1AUP|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 222 DHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKC 281
+ +IE P D+G + TGYR Q + P GG+RF+ V+ +K L FK
Sbjct: 55 ERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFLGFEQAFKD 114
Query: 282 ACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP----GARARE 337
+ +P GGAK G +P S+ E+ + + F EL + IG VP G ARE
Sbjct: 115 SLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRH--IGPDIDVPAGDLGVGARE 172
>pdb|1K89|A Chain A, K89l Mutant Of Glutamate Dehydrogenase
Length = 449
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 222 DHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKC 281
+ +IE P D+G + TGYR Q + P GG+RF+ V+ +K L FK
Sbjct: 55 ERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFLGFEQAFKD 114
Query: 282 ACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP----GARARE 337
+ +P GGAK G +P S+ E+ + + F EL + IG VP G ARE
Sbjct: 115 SLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRH--IGPDIDVPAGDLGVGARE 172
>pdb|4FCC|A Chain A, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|B Chain B, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|C Chain C, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|D Chain D, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|E Chain E, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|F Chain F, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|G Chain G, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|H Chain H, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|I Chain I, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|J Chain J, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|K Chain K, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|L Chain L, Glutamate Dehydrogenase From E. Coli
pdb|4FHN|X Chain X, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 450
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%)
Query: 222 DHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKC 281
+ +I+ D ++ +R Q S+ P KGG+RF V+ +K L TFK
Sbjct: 61 ERVIQFRVVWVDDRNQVQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKN 120
Query: 282 ACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAK 320
A +P GG K G +PK SE E+ + + EL +
Sbjct: 121 ALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYR 159
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 50/124 (40%), Gaps = 15/124 (12%)
Query: 398 GAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQA---KIIAEAANESVQESLERRFG 454
G V EG+ P DI +P A + + + AH++ A K +AE AN F
Sbjct: 304 GLVYLEGQQPWSVPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQ 363
Query: 455 NVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMKYNLGH--LDINA 512
G + P ++ A+ + SGL+ + + L H LDI+
Sbjct: 364 QAG--VLFAPGKA-------ANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIH- 413
Query: 513 HACV 516
HACV
Sbjct: 414 HACV 417
>pdb|2YFG|E Chain E, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%)
Query: 222 DHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKC 281
+ +I+ D ++ +R Q S+ P KGG+RF V+ +K L TFK
Sbjct: 58 ERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKN 117
Query: 282 ACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAK 320
A +P GG K G +PK SE E+ + + EL +
Sbjct: 118 ALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYR 156
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 50/124 (40%), Gaps = 15/124 (12%)
Query: 398 GAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQA---KIIAEAANESVQESLERRFG 454
G V EG+ P DI +P A + + + AH++ A K +AE AN F
Sbjct: 301 GLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQ 360
Query: 455 NVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMKYNLGH--LDINA 512
G + P ++ A+ + SGL+ + + L H LDI+
Sbjct: 361 QAG--VLFAPGKA-------ANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIH- 410
Query: 513 HACV 516
HACV
Sbjct: 411 HACV 414
>pdb|3SBO|A Chain A, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|B Chain B, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|C Chain C, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|D Chain D, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|E Chain E, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|F Chain F, Structure Of E.Coli Gdh From Native Source
pdb|2YFG|A Chain A, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|B Chain B, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|C Chain C, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|D Chain D, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|F Chain F, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%)
Query: 222 DHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKC 281
+ +I+ D ++ +R Q S+ P KGG+RF V+ +K L TFK
Sbjct: 58 ERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKN 117
Query: 282 ACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAK 320
A +P GG K G +PK SE E+ + + EL +
Sbjct: 118 ALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYR 156
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 50/124 (40%), Gaps = 15/124 (12%)
Query: 398 GAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQA---KIIAEAANESVQESLERRFG 454
G V EG+ P DI +P A + + + AH++ A K +AE AN F
Sbjct: 301 GLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQ 360
Query: 455 NVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMKYNLGH--LDINA 512
G + P ++ A+ + SGL+ + + L H LDI+
Sbjct: 361 QAG--VLFAPGKA-------ANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIH- 410
Query: 513 HACV 516
HACV
Sbjct: 411 HACV 414
>pdb|2BMA|A Chain A, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|B Chain B, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|C Chain C, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|D Chain D, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|E Chain E, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|F Chain F, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
Length = 470
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 244 YRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKNYS 303
+R Q+++ P KGG+RF V+ VK L FK + + GG K G +PK S
Sbjct: 100 FRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFKNSLTGLSMGGGKGGSDFDPKGKS 159
Query: 304 ENELEKITRRFTLELAKKGFIGEFKAVPGA 333
+NE+ K + F EL + IG VP
Sbjct: 160 DNEILKFCQAFMNELYRH--IGPCTDVPAG 187
>pdb|1BXG|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Beta-Phenylpropionate
Length = 356
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 88/252 (34%), Gaps = 68/252 (26%)
Query: 249 STHRTPCKGGIRFSD-----DVSRDEVKALSALMTFKCACVDVPFGGAKAGI-------K 296
ST P GG R + D D K L+ MT K A ++P GG K+ I
Sbjct: 32 STQLGPAAGGTRAAQYSQLADALTDAGK-LAGAMTLKMAVSNLPMGGGKSVIALPAPRHS 90
Query: 297 INPKNYSE------NELEKITRRF--------------------------TLELAKKG-- 322
I+P ++ ++K++ + +LE G
Sbjct: 91 IDPSTWARILRIHAENIDKLSGNYWTGPDVNTNSADMDTLNDTTEFVFGRSLERGGAGSS 150
Query: 323 ----FIGEFKAVPGARAREGNVTFNLLFHYKFSSGPVSMYLPQIWVQEKGKCPGLPTHTR 378
+G F+A+ A G + + L G V L + + + T T
Sbjct: 151 AFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTE 210
Query: 379 K---PLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAK 435
+ +AL G E+++ PCD+F P A+ VIT A +
Sbjct: 211 RVAHAVAL--------------GHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCS 256
Query: 436 IIAEAANESVQE 447
++A AAN + +
Sbjct: 257 VVAGAANNVIAD 268
>pdb|1C1D|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nadh And L-Phenylalanine
Length = 355
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 88/252 (34%), Gaps = 68/252 (26%)
Query: 249 STHRTPCKGGIRFSD-----DVSRDEVKALSALMTFKCACVDVPFGGAKAGI-------K 296
ST P GG R + D D K L+ MT K A ++P GG K+ I
Sbjct: 31 STQLGPAAGGTRAAQYSQLADALTDAGK-LAGAMTLKMAVSNLPMGGGKSVIALPAPRHS 89
Query: 297 INPKNYSE------NELEKITRRF--------------------------TLELAKKG-- 322
I+P ++ ++K++ + +LE G
Sbjct: 90 IDPSTWARILRIHAENIDKLSGNYWTGPDVNTNSADMDTLNDTTEFVFGRSLERGGAGSS 149
Query: 323 ----FIGEFKAVPGARAREGNVTFNLLFHYKFSSGPVSMYLPQIWVQEKGKCPGLPTHTR 378
+G F+A+ A G + + L G V L + + + T T
Sbjct: 150 AFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTE 209
Query: 379 K---PLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAK 435
+ +AL G E+++ PCD+F P A+ VIT A +
Sbjct: 210 RVAHAVAL--------------GHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCS 255
Query: 436 IIAEAANESVQE 447
++A AAN + +
Sbjct: 256 VVAGAANNVIAD 267
>pdb|1C1D|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nadh And L-Phenylalanine
Length = 355
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 88/252 (34%), Gaps = 68/252 (26%)
Query: 249 STHRTPCKGGIRFSD-----DVSRDEVKALSALMTFKCACVDVPFGGAKAGI-------K 296
ST P GG R + D D K L+ MT K A ++P GG K+ I
Sbjct: 31 STQLGPAAGGTRAAQYSNLADALTDAGK-LAGAMTLKMAVSNLPMGGGKSVIALPAPRHS 89
Query: 297 INPKNYSE------NELEKITRRF--------------------------TLELAKKG-- 322
I+P ++ ++K++ + +LE G
Sbjct: 90 IDPSTWARILRIHAENIDKLSGNYWTGPDVNTNSADMDTLNDTTEFVFGRSLERGGAGSS 149
Query: 323 ----FIGEFKAVPGARAREGNVTFNLLFHYKFSSGPVSMYLPQIWVQEKGKCPGLPTHTR 378
+G F+A+ A G + + L G V L + + + T T
Sbjct: 150 AFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTE 209
Query: 379 K---PLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAK 435
+ +AL G E+++ PCD+F P A+ VIT A +
Sbjct: 210 RVAHAVAL--------------GHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCS 255
Query: 436 IIAEAANESVQE 447
++A AAN + +
Sbjct: 256 VVAGAANNVIAD 267
>pdb|1BW9|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Phenylpyruvate
Length = 356
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 88/252 (34%), Gaps = 68/252 (26%)
Query: 249 STHRTPCKGGIRFSD-----DVSRDEVKALSALMTFKCACVDVPFGGAKAGI-------K 296
ST P GG R + D D K L+ MT K A ++P GG K+ I
Sbjct: 32 STQLGPAAGGTRAAQYSNLADALTDAGK-LAGAMTLKMAVSNLPMGGGKSVIALPAPRHS 90
Query: 297 INPKNYSE------NELEKITRRF--------------------------TLELAKKG-- 322
I+P ++ ++K++ + +LE G
Sbjct: 91 IDPSTWARILRIHAENIDKLSGNYWTGPDVNTNSADMDTLNDTTEFVFGRSLERGGAGSS 150
Query: 323 ----FIGEFKAVPGARAREGNVTFNLLFHYKFSSGPVSMYLPQIWVQEKGKCPGLPTHTR 378
+G F+A+ A G + + L G V L + + + T T
Sbjct: 151 AFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTE 210
Query: 379 K---PLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAK 435
+ +AL G E+++ PCD+F P A+ VIT A +
Sbjct: 211 RVAHAVAL--------------GHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCS 256
Query: 436 IIAEAANESVQE 447
++A AAN + +
Sbjct: 257 VVAGAANNVIAD 268
>pdb|1BW9|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Phenylpyruvate
Length = 356
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 88/252 (34%), Gaps = 68/252 (26%)
Query: 249 STHRTPCKGGIRFSD-----DVSRDEVKALSALMTFKCACVDVPFGGAKAGI-------K 296
ST P GG R + D D K L+ MT K A ++P GG K+ I
Sbjct: 32 STQLGPAAGGTRAAQYSQLADALTDAGK-LAGAMTLKMAVSNLPMGGGKSVIALPAPRHS 90
Query: 297 INPKNYSE------NELEKITRRF--------------------------TLELAKKG-- 322
I+P ++ ++K++ + +LE G
Sbjct: 91 IDPSTWARILRIHAENIDKLSGNYWTGPDVNTNSADMDTLNDTTEFVFGRSLERGGAGSS 150
Query: 323 ----FIGEFKAVPGARAREGNVTFNLLFHYKFSSGPVSMYLPQIWVQEKGKCPGLPTHTR 378
+G F+A+ A G + + L G V L + + + T T
Sbjct: 151 AFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTE 210
Query: 379 K---PLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAK 435
+ +AL G E+++ PCD+F P A+ VIT A +
Sbjct: 211 RVAHAVAL--------------GHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCS 256
Query: 436 IIAEAANESVQE 447
++A AAN + +
Sbjct: 257 VVAGAANNVIAD 268
>pdb|1C1X|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And L-3-Phenyllactate
Length = 355
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 88/252 (34%), Gaps = 68/252 (26%)
Query: 249 STHRTPCKGGIRFSD-----DVSRDEVKALSALMTFKCACVDVPFGGAKAGI-------K 296
ST P GG R + D D K L+ MT K A ++P GG K+ I
Sbjct: 31 STQLGPAAGGTRAAQYSNLADALTDAGK-LAGAMTLKMAVSNLPMGGGKSVIALPAPRHS 89
Query: 297 INPKNYSE------NELEKITRRF--------------------------TLELAKKG-- 322
I+P ++ ++K++ + +LE G
Sbjct: 90 IDPSTWARILRIHAENIDKLSGNYWTGPDVNTNSADMDTLNDTTEFVFGRSLERGGAGSS 149
Query: 323 ----FIGEFKAVPGARAREGNVTFNLLFHYKFSSGPVSMYLPQIWVQEKGKCPGLPTHTR 378
+G F+A+ A G + + L G V L + + + T T
Sbjct: 150 AFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTE 209
Query: 379 K---PLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAK 435
+ +AL G E+++ PCD+F P A+ VIT A +
Sbjct: 210 RVAHAVAL--------------GHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCS 255
Query: 436 IIAEAANESVQE 447
++A AAN + +
Sbjct: 256 VVAGAANNVIAD 267
>pdb|1BXG|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Beta-Phenylpropionate
Length = 356
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 88/252 (34%), Gaps = 68/252 (26%)
Query: 249 STHRTPCKGGIRFSD-----DVSRDEVKALSALMTFKCACVDVPFGGAKAGI-------K 296
ST P GG R + D D K L+ MT K A ++P GG K+ I
Sbjct: 32 STQLGPAAGGTRAAQYSQLADALTDAGK-LAGAMTLKMAVSNLPMGGGKSVIALPAPRHS 90
Query: 297 INPKNYSE------NELEKITRRF--------------------------TLELAKKG-- 322
I+P ++ ++K++ + +LE G
Sbjct: 91 IDPSTWARILRIHAENIDKLSGNYWTGPDVNTNSADMDTLNDTTEFVFGRSLERGGAGSS 150
Query: 323 ----FIGEFKAVPGARAREGNVTFNLLFHYKFSSGPVSMYLPQIWVQEKGKCPGLPTHTR 378
+G F+A+ A G + + L G V L + + + T T
Sbjct: 151 AFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTE 210
Query: 379 K---PLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAK 435
+ +AL G E+++ PCD+F P A+ VIT A +
Sbjct: 211 RVAHAVAL--------------GHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCS 256
Query: 436 IIAEAANESVQE 447
++A AAN + +
Sbjct: 257 VVAGAANNVIAD 268
>pdb|1C1X|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And L-3-Phenyllactate
Length = 355
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 88/252 (34%), Gaps = 68/252 (26%)
Query: 249 STHRTPCKGGIRFSD-----DVSRDEVKALSALMTFKCACVDVPFGGAKAGI-------K 296
ST P GG R + D D K L+ MT K A ++P GG K+ I
Sbjct: 31 STQLGPAAGGTRAAQYSQLADALTDAGK-LAGAMTLKMAVSNLPMGGGKSVIALPAPRHS 89
Query: 297 INPKNYSE------NELEKITRRF--------------------------TLELAKKG-- 322
I+P ++ ++K++ + +LE G
Sbjct: 90 IDPSTWARILRIHAENIDKLSGNYWTGPDVNTNSADMDTLNDTTEFVFGRSLERGGAGSS 149
Query: 323 ----FIGEFKAVPGARAREGNVTFNLLFHYKFSSGPVSMYLPQIWVQEKGKCPGLPTHTR 378
+G F+A+ A G + + L G V L + + + T T
Sbjct: 150 AFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTE 209
Query: 379 K---PLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAK 435
+ +AL G E+++ PCD+F P A+ VIT A +
Sbjct: 210 RVAHAVAL--------------GHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCS 255
Query: 436 IIAEAANESVQE 447
++A AAN + +
Sbjct: 256 VVAGAANNVIAD 267
>pdb|3VPX|A Chain A, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila.
pdb|3VPX|B Chain B, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila
Length = 364
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 91/245 (37%), Gaps = 49/245 (20%)
Query: 246 AQHSTHRTPCKGGIRF----SDDVSRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKN 301
A H T P GG R S++ + ++ L+ MT+K A + GG K I NPK
Sbjct: 30 AIHDTTLGPALGGTRMWTYASEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVIIGNPKT 89
Query: 302 YSENELEKITRRFTLELAKKGFIGEFKAVPGARAREGNVTF-NLLFHY-------KFSSG 353
+E+ + R+ +G G + E ++ NL Y SSG
Sbjct: 90 DKNDEMFRAFGRYI-----EGLNGRYITAEDVGTTEADMDLINLETDYVTGTSAGAGSSG 144
Query: 354 ---PVSMYLPQIWVQEK-------------GKCPGLPTHTRKPLALEEYKLDNGT----- 392
PV+ Y I+ K GK + AL EY + G
Sbjct: 145 NPSPVTAY--GIYYGMKAAAKEAFGDDSLAGKTVAVQGVGNVAYALCEYLHEEGAKLIIT 202
Query: 393 ---------IVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAANE 443
V GA + + DIF P A+ +I +++AK+IA +AN
Sbjct: 203 DINEEAVQRAVDAFGATAVGINEIYSQEADIFAPCALGAIINDETIPQLKAKVIAGSANN 262
Query: 444 SVQES 448
++E+
Sbjct: 263 QLKET 267
>pdb|2XR9|A Chain A, Crystal Structure Of Autotaxin (Enpp2)
Length = 827
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 25/121 (20%)
Query: 263 DDVSRDEVKALSALMT---FKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELA 319
D+VSR + L + C C D K+ PKN +LE++ +R L
Sbjct: 510 DEVSRPNYPGIMYLQSEFDLGCTCDD----------KVEPKN----KLEELNKR----LH 551
Query: 320 KKGFIGEFKAVPGARAREGNVTFNLLFHYKFSSGPVSMYLPQIW----VQEKGKCPGLPT 375
KG E + G A ++++L+H F SG ++L +W + ++ + +P
Sbjct: 552 TKGSTKERHLLYGRPAVLYRTSYDILYHTDFESGYSEIFLMPLWTSYTISKQAEVSSIPE 611
Query: 376 H 376
H
Sbjct: 612 H 612
>pdb|2XRG|A Chain A, Crystal Structure Of Autotaxin (Enpp2) In Complex With The
Ha155 Boronic Acid Inhibitor
Length = 862
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 25/121 (20%)
Query: 263 DDVSRDEVKALSALMT---FKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELA 319
D+VSR + L + C C D K+ PKN +LE++ +R L
Sbjct: 545 DEVSRPNYPGIMYLQSEFDLGCTCDD----------KVEPKN----KLEELNKR----LH 586
Query: 320 KKGFIGEFKAVPGARAREGNVTFNLLFHYKFSSGPVSMYLPQIW----VQEKGKCPGLPT 375
KG E + G A ++++L+H F SG ++L +W + ++ + +P
Sbjct: 587 TKGSTEERHLLYGRPAVLYRTSYDILYHTDFESGYSEIFLMPLWTSYTISKQAEVSSIPE 646
Query: 376 H 376
H
Sbjct: 647 H 647
>pdb|3NKM|A Chain A, Crystal Structure Of Mouse Autotaxin
pdb|3NKN|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
14:0-Lpa
pdb|3NKO|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
16:0-Lpa
pdb|3NKP|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:1-Lpa
pdb|3NKQ|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:3-Lpa
pdb|3NKR|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
22:6-Lpa
Length = 831
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 304 ENELEKITRRFTLELAKKGFIGEFKAVPGARAREGNVTFNLLFHYKFSSGPVSMYLPQIW 363
+N+LE++ +R L KG E + G A ++++L+H F SG ++L +W
Sbjct: 536 KNKLEELNKR----LHTKGSTEERHLLYGRPAVLYRTSYDILYHTDFESGYSEIFLMPLW 591
Query: 364 ----VQEKGKCPGLPTH 376
+ ++ + +P H
Sbjct: 592 TSYTISKQAEVSSIPEH 608
>pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Interacting Factor
Selenomethionine-f1
Length = 293
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 24/145 (16%)
Query: 4 IALFYTCITQNAAMLKLRVLCQGLGTKLCPISATAVQSQQRNLHDIPEKLKDI------- 56
+AL Y Q+ LK ++ GL + P++ V+ R + ++P K +D
Sbjct: 110 LALAYAVKYQD--HLKGLIVSGGLSS--VPLT---VKEXNRLIDELPAKYRDAIKKYGSS 162
Query: 57 PTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDK----------KKKVRGILLG 106
+ ENP++ + V +F+H+ +ED E +K E + + + G +
Sbjct: 163 GSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIXNGPNEFTITGTIKD 222
Query: 107 MQPCDHIIEISFPVRRDSGDYEIIT 131
D I I P G+Y+ +T
Sbjct: 223 WDITDKISAIKIPTLITVGEYDEVT 247
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 17/111 (15%)
Query: 149 AVQSQQRNLHDIPEKLKDI-------PTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGR 201
V+ R + ++P K +D + ENP++ + V +F+H+ +ED E +K
Sbjct: 137 TVKEXNRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSL 196
Query: 202 MTIEDK----------KKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIIT 242
E + + + G + D I I P G+Y+ +T
Sbjct: 197 EYAERRNVYRIXNGPNEFTITGTIKDWDITDKISAIKIPTLITVGEYDEVT 247
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 24/145 (16%)
Query: 4 IALFYTCITQNAAMLKLRVLCQGLGTKLCPISATAVQSQQRNLHDIPEKLKDI------- 56
+AL Y Q+ LK ++ GL + P++ V+ R + ++P K +D
Sbjct: 110 LALAYAVKYQDH--LKGLIVSGGLSS--VPLT---VKEMNRLIDELPAKYRDAIKKYGSS 162
Query: 57 PTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDK----------KKKVRGILLG 106
+ ENP++ + V +F+H+ +ED E +K E + + + G +
Sbjct: 163 GSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNQFTITGTIKD 222
Query: 107 MQPCDHIIEISFPVRRDSGDYEIIT 131
D I I P G+Y+ +T
Sbjct: 223 WDITDKISAIKIPTLITVGEYDEVT 247
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 17/111 (15%)
Query: 149 AVQSQQRNLHDIPEKLKDI-------PTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGR 201
V+ R + ++P K +D + ENP++ + V +F+H+ +ED E +K
Sbjct: 137 TVKEMNRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSL 196
Query: 202 MTIEDK----------KKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIIT 242
E + + + G + D I I P G+Y+ +T
Sbjct: 197 EYAERRNVYRIMNGPNQFTITGTIKDWDITDKISAIKIPTLITVGEYDEVT 247
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 24/145 (16%)
Query: 4 IALFYTCITQNAAMLKLRVLCQGLGTKLCPISATAVQSQQRNLHDIPEKLKDI------- 56
+AL Y Q+ LK ++ GL + P++ V+ R + ++P K +D
Sbjct: 110 LALAYAVKYQDH--LKGLIVSGGLSS--VPLT---VKEMNRLIDELPAKYRDAIKKYGSS 162
Query: 57 PTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDK----------KKKVRGILLG 106
+ ENP++ + V +F+H+ +ED E +K E + + + G +
Sbjct: 163 GSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITGTIKD 222
Query: 107 MQPCDHIIEISFPVRRDSGDYEIIT 131
D I I P G+Y+ +T
Sbjct: 223 WDITDKISAIKIPTLITVGEYDQVT 247
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 17/111 (15%)
Query: 149 AVQSQQRNLHDIPEKLKDI-------PTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGR 201
V+ R + ++P K +D + ENP++ + V +F+H+ +ED E +K
Sbjct: 137 TVKEMNRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSL 196
Query: 202 MTIEDK----------KKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIIT 242
E + + + G + D I I P G+Y+ +T
Sbjct: 197 EYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAIKIPTLITVGEYDQVT 247
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 24/145 (16%)
Query: 4 IALFYTCITQNAAMLKLRVLCQGLGTKLCPISATAVQSQQRNLHDIPEKLKDI------- 56
+AL Y Q+ LK ++ GL + P++ V+ R + ++P K +D
Sbjct: 110 LALAYAVKYQDH--LKGLIVSGGLSS--VPLT---VKEMNRLIDELPAKYRDAIKKYGSS 162
Query: 57 PTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDK----------KKKVRGILLG 106
+ ENP++ + V +F+H+ +ED E +K E + + + G +
Sbjct: 163 GSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITGTIKD 222
Query: 107 MQPCDHIIEISFPVRRDSGDYEIIT 131
D I I P G+Y+ +T
Sbjct: 223 WDITDKISAIKIPTLITVGEYDEVT 247
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 17/111 (15%)
Query: 149 AVQSQQRNLHDIPEKLKDI-------PTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGR 201
V+ R + ++P K +D + ENP++ + V +F+H+ +ED E +K
Sbjct: 137 TVKEMNRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSL 196
Query: 202 MTIEDK----------KKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIIT 242
E + + + G + D I I P G+Y+ +T
Sbjct: 197 EYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAIKIPTLITVGEYDEVT 247
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 24/145 (16%)
Query: 4 IALFYTCITQNAAMLKLRVLCQGLGTKLCPISATAVQSQQRNLHDIPEKLKDI------- 56
+AL Y Q+ LK ++ GL + P++ V+ R + ++P K +D
Sbjct: 110 LALAYAVKYQDH--LKGLIVSGGLSS--VPLT---VKEMNRLIDELPAKYRDAIKKYGSS 162
Query: 57 PTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDK----------KKKVRGILLG 106
+ ENP++ + V +F+H+ +ED E +K E + + + G +
Sbjct: 163 GSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVFRIMNGPNEFTITGTIKD 222
Query: 107 MQPCDHIIEISFPVRRDSGDYEIIT 131
D I I P G+Y+ +T
Sbjct: 223 WDITDKISAIKIPTLITVGEYDEVT 247
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 17/111 (15%)
Query: 149 AVQSQQRNLHDIPEKLKDI-------PTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGR 201
V+ R + ++P K +D + ENP++ + V +F+H+ +ED E +K
Sbjct: 137 TVKEMNRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSL 196
Query: 202 MTIEDK----------KKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIIT 242
E + + + G + D I I P G+Y+ +T
Sbjct: 197 EYAERRNVFRIMNGPNEFTITGTIKDWDITDKISAIKIPTLITVGEYDEVT 247
>pdb|1P6K|A Chain A, Rat Neuronal Nos D597n Mutant Heme Domain With L-N(Omega)-
Nitroarginine-2,4-L-Diaminobutyric Amide Bound
pdb|1P6K|B Chain B, Rat Neuronal Nos D597n Mutant Heme Domain With L-N(Omega)-
Nitroarginine-2,4-L-Diaminobutyric Amide Bound
Length = 421
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 287 PFGGAKAGIKINPKNYSENE----LEKITRRFTLELAKKGFIGEFKAVPGARAREGNVTF 342
PF G G +I +NY +N LE++ ++ L++ K + + +A+ V
Sbjct: 287 PFSGWYMGTEIGVRNYCDNSRYNILEEVAKKMDLDMRKTSSLWKDQAL---------VEI 337
Query: 343 NLLFHYKFSSGPVSM 357
N+ Y F S V++
Sbjct: 338 NIAVLYSFQSDKVTI 352
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 24/145 (16%)
Query: 4 IALFYTCITQNAAMLKLRVLCQGLGTKLCPISATAVQSQQRNLHDIPEKLKDI------- 56
+AL Y Q+ LK ++ GL + P++ V+ R + ++P K +D
Sbjct: 110 LALAYAVKYQDH--LKGLIVSGGLSS--VPLT---VKEMNRLIDELPAKYRDAIKKYGSS 162
Query: 57 PTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDK----------KKKVRGILLG 106
+ ENP++ + V +F+H+ +ED E +K E + + + G +
Sbjct: 163 GSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITGTIKD 222
Query: 107 MQPCDHIIEISFPVRRDSGDYEIIT 131
D I I P G+Y+ +T
Sbjct: 223 WDITDKISAIKIPTLITVGEYDEVT 247
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 17/111 (15%)
Query: 149 AVQSQQRNLHDIPEKLKDI-------PTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGR 201
V+ R + ++P K +D + ENP++ + V +F+H+ +ED E +K
Sbjct: 137 TVKEMNRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSL 196
Query: 202 MTIEDK----------KKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIIT 242
E + + + G + D I I P G+Y+ +T
Sbjct: 197 EYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAIKIPTLITVGEYDEVT 247
>pdb|3JX6|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597nM336VY706
Heme Domain Complexed With N1-[(3' R,4'
R)-4'-((6"-Amino-4"
Methylpyridin-2"-Yl)methyl)pyrrolidin-3'-Yl]-N2-(3'-
Fluorop Ethane-1,2-Diamine Tetrahydrochloride
pdb|3JX6|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597nM336VY706
Heme Domain Complexed With N1-[(3' R,4'
R)-4'-((6"-Amino-4"
Methylpyridin-2"-Yl)methyl)pyrrolidin-3'-Yl]-N2-(3'-
Fluorop Ethane-1,2-Diamine Tetrahydrochloride
pdb|3NLJ|A Chain A, Structure Of Neuronal Nitric Oxide Synthase
D597nM336VY706A TRIPLE Mutant Heme Domain Complexed With
6-{{(3'r,4'r)-3'-[2"-(3'''- Fluorophenethylamino)ethoxy]
Pyrrolidin-4'-Yl}methyl}-4- Methylpyridin-2-Amine
pdb|3NLJ|B Chain B, Structure Of Neuronal Nitric Oxide Synthase
D597nM336VY706A TRIPLE Mutant Heme Domain Complexed With
6-{{(3'r,4'r)-3'-[2"-(3'''- Fluorophenethylamino)ethoxy]
Pyrrolidin-4'-Yl}methyl}-4- Methylpyridin-2-Amine
Length = 422
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 287 PFGGAKAGIKINPKNYSENE----LEKITRRFTLELAKKGFIGEFKAVPGARAREGNVTF 342
PF G G +I +NY +N LE++ ++ L++ K + + +A+ V
Sbjct: 287 PFSGWYMGTEIGVRNYCDNSRYNILEEVAKKMDLDMRKTSSLWKDQAL---------VEI 337
Query: 343 NLLFHYKFSSGPVSM 357
N+ Y F S V++
Sbjct: 338 NIAVLYSFQSDKVTI 352
>pdb|3DQR|A Chain A, Structure Of Neuronal Nos D597nM336V MUTANT HEME DOMAIN IN
Complex With A Inhibitor
(+-)-N1-{cis-4'-[(6"-Aminopyridin-
2"-Yl)methyl]pyrrolidin-3'-Yl}ethane-1,2-Diamine
pdb|3DQR|B Chain B, Structure Of Neuronal Nos D597nM336V MUTANT HEME DOMAIN IN
Complex With A Inhibitor
(+-)-N1-{cis-4'-[(6"-Aminopyridin-
2"-Yl)methyl]pyrrolidin-3'-Yl}ethane-1,2-Diamine
pdb|3JX2|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3's,4's)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3JX2|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3's,4's)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3JX3|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3'r,4'r)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3JX3|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3'r,4'r)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3JX4|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3'r,4's)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3JX4|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3'r,4's)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3JX5|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3's,4'r)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3JX5|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3's,4'r)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3NLP|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6-{{(3's,4's)-3'-[2"-(3'''-
Fluorophenethylamino)ethoxy]pyrrolidin-4'-Yl}methyl}-4-
Methylpyridin- 2-Amine
pdb|3NLP|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6-{{(3's,4's)-3'-[2"-(3'''-
Fluorophenethylamino)ethoxy]pyrrolidin-4'-Yl}methyl}-4-
Methylpyridin- 2-Amine
pdb|3NLQ|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6-{{(3'r,4'r)-3'-[2"-(3'''-
Fluorophenethylamino)ethoxy]pyrrolidin-4'-Yl}methyl}-4-
Methylpyridin- 2-Amine
pdb|3NLQ|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6-{{(3'r,4'r)-3'-[2"-(3'''-
Fluorophenethylamino)ethoxy]pyrrolidin-4'-Yl}methyl}-4-
Methylpyridin- 2-Amine
pdb|3NLR|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6-{{(3'r,4's)-3'-[2"-(3'''-
Fluorophenethylamino)ethoxy]pyrrolidin-4'-Yl}methyl}-4-
Methylpyridin- 2-Amine
pdb|3NLR|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6-{{(3'r,4's)-3'-[2"-(3'''-
Fluorophenethylamino)ethoxy]pyrrolidin-4'-Yl}methyl}-4-
Methylpyridin- 2-Amine
pdb|3N61|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-2,1-
Diyl))bis(4-Methylpyridin-2-Amine)
pdb|3N61|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-2,1-
Diyl))bis(4-Methylpyridin-2-Amine)
pdb|3N63|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)bis(Ethane-
2,1-Diyl))bis(4-Methylpyridin-2-Amine)
pdb|3N63|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)bis(Ethane-
2,1-Diyl))bis(4-Methylpyridin-2-Amine)
Length = 422
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 287 PFGGAKAGIKINPKNYSENE----LEKITRRFTLELAKKGFIGEFKAVPGARAREGNVTF 342
PF G G +I +NY +N LE++ ++ L++ K + + +A+ V
Sbjct: 287 PFSGWYMGTEIGVRNYCDNSRYNILEEVAKKMDLDMRKTSSLWKDQAL---------VEI 337
Query: 343 NLLFHYKFSSGPVSM 357
N+ Y F S V++
Sbjct: 338 NIAVLYSFQSDKVTI 352
>pdb|3JX0|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase D597n
Mutant Domain In Complex With
N1-{(3's,4's)-4'-[(6"-Amino-4"-Methy
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethan Diamine
pdb|3JX0|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase D597n
Mutant Domain In Complex With
N1-{(3's,4's)-4'-[(6"-Amino-4"-Methy
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethan Diamine
pdb|3JX1|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase D597n
Mutant Domain In Complex With
N1-{(3'r,4'r)-4'-[(6"-Amino-4"-Methy
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethan Diamine
pdb|3JX1|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase D597n
Mutant Domain In Complex With
N1-{(3'r,4'r)-4'-[(6"-Amino-4"-Methy
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethan Diamine
pdb|3N62|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597n Mutant
Heme Domain In Complex With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-2,1-Diyl))
Bis(4-Methylpyridin-2-Amine)
pdb|3N62|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597n Mutant
Heme Domain In Complex With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-2,1-Diyl))
Bis(4-Methylpyridin-2-Amine)
pdb|3N64|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597n Mutant
Heme Domain In Complex With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)bis(Ethane-2,1-
Diyl))bis(4-Methylpyridin-2-Amine)
pdb|3N64|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597n Mutant
Heme Domain In Complex With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)bis(Ethane-2,1-
Diyl))bis(4-Methylpyridin-2-Amine)
Length = 422
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 287 PFGGAKAGIKINPKNYSENE----LEKITRRFTLELAKKGFIGEFKAVPGARAREGNVTF 342
PF G G +I +NY +N LE++ ++ L++ K + + +A+ V
Sbjct: 287 PFSGWYMGTEIGVRNYCDNSRYNILEEVAKKMDLDMRKTSSLWKDQAL---------VEI 337
Query: 343 NLLFHYKFSSGPVSM 357
N+ Y F S V++
Sbjct: 338 NIAVLYSFQSDKVTI 352
>pdb|1ZZR|A Chain A, Rat Nnos D597nM336V DOUBLE MUTANT WITH
L-N(Omega)-Nitroarginine-(4r)- Amino-L-Proline Amide
Bound
pdb|1ZZR|B Chain B, Rat Nnos D597nM336V DOUBLE MUTANT WITH
L-N(Omega)-Nitroarginine-(4r)- Amino-L-Proline Amide
Bound
pdb|1ZZU|A Chain A, Rat Nnos D597nM336V DOUBLE MUTANT WITH
L-N(Omega)-Nitroarginine-2,4- L-Diaminobutyric Amide
Bound
pdb|1ZZU|B Chain B, Rat Nnos D597nM336V DOUBLE MUTANT WITH
L-N(Omega)-Nitroarginine-2,4- L-Diaminobutyric Amide
Bound
Length = 420
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 287 PFGGAKAGIKINPKNYSENE----LEKITRRFTLELAKKGFIGEFKAVPGARAREGNVTF 342
PF G G +I +NY +N LE++ ++ L++ K + + +A+ V
Sbjct: 285 PFSGWYMGTEIGVRNYCDNSRYNILEEVAKKMDLDMRKTSSLWKDQAL---------VEI 335
Query: 343 NLLFHYKFSSGPVSM 357
N+ Y F S V++
Sbjct: 336 NIAVLYSFQSDKVTI 350
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 24/145 (16%)
Query: 4 IALFYTCITQNAAMLKLRVLCQGLGTKLCPISATAVQSQQRNLHDIPEKLKDI------- 56
+AL Y Q+ LK ++ GL + P++ V+ R + ++P K +D
Sbjct: 110 LALAYAVKYQDH--LKGLIVSGGLSS--VPLT---VKEMNRLIDELPAKYRDAIKKYGSS 162
Query: 57 PTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDK----------KKKVRGILLG 106
+ ENP++ + V +F+H+ +ED E +K E + + + G +
Sbjct: 163 GSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITGTIKD 222
Query: 107 MQPCDHIIEISFPVRRDSGDYEIIT 131
D I I P G+Y+ +T
Sbjct: 223 WDITDKISAIKIPTLITVGEYDEVT 247
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 17/111 (15%)
Query: 149 AVQSQQRNLHDIPEKLKDI-------PTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGR 201
V+ R + ++P K +D + ENP++ + V +F+H+ +ED E +K
Sbjct: 137 TVKEMNRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSL 196
Query: 202 MTIEDK----------KKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIIT 242
E + + + G + D I I P G+Y+ +T
Sbjct: 197 EYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAIKIPTLITVGEYDEVT 247
>pdb|1ZZQ|A Chain A, Rat Nnos D597n Mutant With L-N(Omega)-Nitroarginine-(4r)-
Amino-L-Proline Amide Bound
pdb|1ZZQ|B Chain B, Rat Nnos D597n Mutant With L-N(Omega)-Nitroarginine-(4r)-
Amino-L-Proline Amide Bound
Length = 420
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 287 PFGGAKAGIKINPKNYSENE----LEKITRRFTLELAKKGFIGEFKAVPGARAREGNVTF 342
PF G G +I +NY +N LE++ ++ L++ K + + +A+ V
Sbjct: 285 PFSGWYMGTEIGVRNYCDNSRYNILEEVAKKMDLDMRKTSSLWKDQAL---------VEI 335
Query: 343 NLLFHYKFSSGPVSM 357
N+ Y F S V++
Sbjct: 336 NIAVLYSFQSDKVTI 350
>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 279
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 128 EIITGYRAQHSTHRTPCKGATAVQSQQRNLHDIPEKLKDIPTAENPKFF 176
E+++ Y A S +R CKG Q + E+L+D+ + NP F
Sbjct: 141 EVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIF 189
>pdb|1LEH|A Chain A, Leucine Dehydrogenase From Bacillus Sphaericus
pdb|1LEH|B Chain B, Leucine Dehydrogenase From Bacillus Sphaericus
Length = 364
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 412 CDIFVPAAVEKVITKNNAHKIQAKIIAEAANESVQE 447
CDIF P A+ V+ +++AK+IA +A+ +++
Sbjct: 231 CDIFAPCALGAVLNDFTIPQLKAKVIAGSADNQLKD 266
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,952,803
Number of Sequences: 62578
Number of extensions: 719509
Number of successful extensions: 1807
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1654
Number of HSP's gapped (non-prelim): 160
length of query: 568
length of database: 14,973,337
effective HSP length: 104
effective length of query: 464
effective length of database: 8,465,225
effective search space: 3927864400
effective search space used: 3927864400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)