Query psy8846
Match_columns 568
No_of_seqs 376 out of 2233
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 20:36:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8846.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8846hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14030 glutamate dehydrogena 100.0 5.7E-86 1.2E-90 707.7 29.7 342 171-530 16-445 (445)
2 COG0334 GdhA Glutamate dehydro 100.0 1.4E-85 3E-90 691.2 28.8 332 174-530 2-411 (411)
3 PLN02477 glutamate dehydrogena 100.0 3.4E-85 7.3E-90 698.6 30.5 332 174-530 2-410 (410)
4 PRK09414 glutamate dehydrogena 100.0 8.7E-83 1.9E-87 685.0 29.8 342 171-530 20-445 (445)
5 PTZ00079 NADP-specific glutama 100.0 3.6E-81 7.7E-86 669.9 30.4 340 171-530 27-454 (454)
6 PRK14031 glutamate dehydrogena 100.0 5.2E-81 1.1E-85 669.9 29.1 342 171-530 16-444 (444)
7 KOG2250|consensus 100.0 4.9E-71 1.1E-75 584.2 22.6 364 162-531 15-485 (514)
8 PTZ00324 glutamate dehydrogena 100.0 2E-49 4.4E-54 452.5 25.3 297 204-521 455-913 (1002)
9 PF02812 ELFV_dehydrog_N: Glu/ 100.0 9.7E-40 2.1E-44 299.9 10.2 123 221-345 1-130 (131)
10 cd05313 NAD_bind_2_Glu_DH NAD( 100.0 2.5E-39 5.4E-44 326.6 13.1 174 353-529 47-254 (254)
11 KOG2250|consensus 100.0 2.1E-37 4.6E-42 328.7 15.0 429 45-527 9-509 (514)
12 PF00208 ELFV_dehydrog: Glutam 100.0 1.7E-35 3.6E-40 298.2 8.3 171 353-528 41-244 (244)
13 cd05211 NAD_bind_Glu_Leu_Phe_V 100.0 5.5E-34 1.2E-38 282.6 13.7 163 353-520 32-214 (217)
14 cd01076 NAD_bind_1_Glu_DH NAD( 100.0 1.6E-32 3.4E-37 273.9 15.1 163 353-520 40-223 (227)
15 PRK14030 glutamate dehydrogena 100.0 9E-31 1.9E-35 281.9 11.2 185 59-270 15-211 (445)
16 PRK09414 glutamate dehydrogena 100.0 1.2E-29 2.6E-34 273.9 11.4 180 59-267 19-212 (445)
17 PLN02477 glutamate dehydrogena 100.0 8.6E-30 1.9E-34 272.9 9.4 133 63-224 2-138 (410)
18 PRK14031 glutamate dehydrogena 100.0 7.4E-29 1.6E-33 267.2 9.9 185 59-270 15-211 (444)
19 PTZ00079 NADP-specific glutama 99.9 6.8E-28 1.5E-32 259.4 9.2 178 59-267 26-217 (454)
20 COG0334 GdhA Glutamate dehydro 99.9 3.8E-27 8.2E-32 249.2 8.4 174 63-268 2-188 (411)
21 cd01075 NAD_bind_Leu_Phe_Val_D 99.9 5.5E-23 1.2E-27 201.5 12.8 152 353-520 37-196 (200)
22 PF02812 ELFV_dehydrog_N: Glu/ 99.9 1.6E-23 3.4E-28 192.7 2.6 104 110-224 1-108 (131)
23 smart00839 ELFV_dehydrog Gluta 99.7 3.9E-18 8.5E-23 150.7 7.9 87 412-503 3-102 (102)
24 PTZ00324 glutamate dehydrogena 99.3 3.7E-13 8E-18 156.0 1.6 186 103-313 465-715 (1002)
25 PF05088 Bac_GDH: Bacterial NA 98.3 1.6E-05 3.5E-10 97.5 17.0 65 254-320 733-805 (1528)
26 COG2902 NAD-specific glutamate 97.8 0.00024 5.1E-09 85.2 14.4 64 254-320 795-867 (1592)
27 PRK08374 homoserine dehydrogen 97.8 1.1E-05 2.3E-10 85.7 2.0 144 353-505 11-205 (336)
28 PRK06392 homoserine dehydrogen 96.9 0.00098 2.1E-08 70.7 4.4 146 353-505 9-199 (326)
29 cd05191 NAD_bind_amino_acid_DH 93.4 0.18 3.9E-06 42.8 5.6 53 353-441 32-86 (86)
30 PRK06270 homoserine dehydrogen 92.6 0.15 3.2E-06 54.4 4.9 72 353-424 11-102 (341)
31 COG1023 Gnd Predicted 6-phosph 89.3 2.4 5.2E-05 43.7 9.4 170 353-536 9-246 (300)
32 PF03446 NAD_binding_2: NAD bi 88.9 0.52 1.1E-05 44.6 4.3 94 353-457 10-112 (163)
33 PF03807 F420_oxidored: NADP o 86.0 0.59 1.3E-05 39.7 2.5 79 353-442 8-95 (96)
34 PRK09599 6-phosphogluconate de 85.8 5.4 0.00012 41.5 10.1 150 353-516 9-209 (301)
35 COG0460 ThrA Homoserine dehydr 85.1 2.6 5.7E-05 45.2 7.3 142 353-505 12-197 (333)
36 PF00670 AdoHcyase_NAD: S-aden 84.5 1.6 3.4E-05 42.2 4.9 74 353-438 32-106 (162)
37 PF10727 Rossmann-like: Rossma 82.2 1.5 3.2E-05 40.7 3.6 64 353-425 19-82 (127)
38 COG0373 HemA Glutamyl-tRNA red 81.5 6.8 0.00015 43.3 8.9 84 353-445 187-278 (414)
39 PF02826 2-Hacid_dh_C: D-isome 80.7 3.1 6.7E-05 40.0 5.4 90 353-454 45-142 (178)
40 PRK12491 pyrroline-5-carboxyla 77.9 5.2 0.00011 41.4 6.4 102 353-465 11-121 (272)
41 PTZ00075 Adenosylhomocysteinas 77.3 3.1 6.6E-05 46.7 4.7 79 353-443 263-343 (476)
42 PRK05476 S-adenosyl-L-homocyst 76.4 2.5 5.5E-05 46.7 3.8 77 353-441 221-299 (425)
43 PF01488 Shikimate_DH: Shikima 75.8 7.1 0.00015 35.9 6.0 86 353-444 21-112 (135)
44 KOG0409|consensus 75.6 3.1 6.8E-05 44.0 4.0 58 350-418 40-98 (327)
45 TIGR01546 GAPDH-II_archae glyc 74.6 5.4 0.00012 42.8 5.6 76 353-432 7-95 (333)
46 TIGR02853 spore_dpaA dipicolin 72.3 5.7 0.00012 41.5 5.0 82 353-445 160-244 (287)
47 PTZ00142 6-phosphogluconate de 70.9 7.3 0.00016 43.7 5.7 147 353-504 10-208 (470)
48 cd01065 NAD_bind_Shikimate_DH 69.7 15 0.00033 33.6 6.8 106 353-465 28-138 (155)
49 TIGR01035 hemA glutamyl-tRNA r 69.4 19 0.0004 39.7 8.4 87 353-449 189-286 (417)
50 TIGR00873 gnd 6-phosphoglucona 65.5 11 0.00023 42.3 5.6 147 353-504 8-205 (467)
51 cd00401 AdoHcyase S-adenosyl-L 64.8 6.2 0.00013 43.6 3.6 69 353-433 211-280 (413)
52 PRK13243 glyoxylate reductase; 64.4 21 0.00046 38.0 7.5 88 353-453 159-254 (333)
53 PLN03139 formate dehydrogenase 63.8 16 0.00034 40.0 6.4 81 353-445 208-295 (386)
54 PRK09310 aroDE bifunctional 3- 63.2 20 0.00044 40.1 7.3 126 353-494 341-471 (477)
55 PRK13304 L-aspartate dehydroge 62.1 14 0.00031 37.9 5.5 101 353-465 10-120 (265)
56 PRK15461 NADH-dependent gamma- 61.9 21 0.00045 37.2 6.7 146 353-513 10-202 (296)
57 PRK00045 hemA glutamyl-tRNA re 61.8 31 0.00068 37.9 8.4 86 353-448 191-288 (423)
58 TIGR00872 gnd_rel 6-phosphoglu 61.7 14 0.0003 38.6 5.3 150 353-514 9-205 (298)
59 TIGR01692 HIBADH 3-hydroxyisob 59.6 27 0.00058 36.1 7.0 147 353-514 5-198 (288)
60 COG0111 SerA Phosphoglycerate 59.4 46 0.00099 35.6 8.8 87 353-453 151-247 (324)
61 TIGR01505 tartro_sem_red 2-hyd 59.3 26 0.00057 36.0 6.9 147 353-514 8-201 (291)
62 TIGR01915 npdG NADPH-dependent 59.2 11 0.00023 37.5 3.8 87 353-443 10-103 (219)
63 PRK11559 garR tartronate semia 58.2 30 0.00066 35.6 7.1 92 353-456 11-113 (296)
64 PRK07680 late competence prote 58.0 24 0.00053 36.0 6.3 101 353-465 9-118 (273)
65 TIGR00507 aroE shikimate 5-deh 57.5 55 0.0012 33.5 8.8 105 353-465 126-236 (270)
66 PRK08177 short chain dehydroge 56.5 9.4 0.0002 37.2 2.9 31 353-383 11-41 (225)
67 TIGR00936 ahcY adenosylhomocys 56.2 13 0.00027 41.1 4.1 78 353-442 204-283 (406)
68 PRK00676 hemA glutamyl-tRNA re 55.4 38 0.00083 36.5 7.4 127 353-503 183-319 (338)
69 TIGR00518 alaDH alanine dehydr 55.3 15 0.00033 39.7 4.5 81 353-439 176-265 (370)
70 COG2085 Predicted dinucleotide 55.2 27 0.00059 35.2 5.9 82 353-443 10-95 (211)
71 PLN02858 fructose-bisphosphate 54.4 26 0.00056 44.5 6.9 150 353-516 13-211 (1378)
72 PLN02494 adenosylhomocysteinas 54.4 15 0.00032 41.4 4.3 78 353-442 263-342 (477)
73 PRK07574 formate dehydrogenase 53.9 34 0.00075 37.4 6.9 81 353-445 201-288 (385)
74 PRK09291 short chain dehydroge 53.8 9.5 0.0002 37.6 2.4 22 353-374 12-33 (257)
75 COG0057 GapA Glyceraldehyde-3- 53.6 50 0.0011 35.6 7.9 86 353-440 10-121 (335)
76 KOG0068|consensus 53.5 35 0.00075 37.1 6.6 78 353-444 155-239 (406)
77 PRK08306 dipicolinate synthase 53.4 25 0.00054 36.9 5.6 81 353-444 161-244 (296)
78 PRK06476 pyrroline-5-carboxyla 53.2 39 0.00084 34.2 6.8 91 353-453 9-105 (258)
79 PRK03659 glutathione-regulated 52.9 63 0.0014 37.3 9.2 93 353-452 409-510 (601)
80 PRK15438 erythronate-4-phospha 51.9 25 0.00054 38.4 5.5 85 353-453 125-221 (378)
81 PRK08410 2-hydroxyacid dehydro 51.9 32 0.00069 36.3 6.1 85 353-453 154-246 (311)
82 PLN02350 phosphogluconate dehy 51.2 27 0.00058 39.6 5.7 153 353-514 15-221 (493)
83 PRK12490 6-phosphogluconate de 50.9 32 0.0007 35.8 5.9 147 353-513 9-205 (299)
84 cd05213 NAD_bind_Glutamyl_tRNA 50.4 28 0.00062 36.6 5.5 86 353-448 187-281 (311)
85 PRK06928 pyrroline-5-carboxyla 50.3 38 0.00083 34.9 6.3 102 353-465 10-121 (277)
86 COG2084 MmsB 3-hydroxyisobutyr 49.2 21 0.00045 37.6 4.2 185 353-555 9-248 (286)
87 PRK09620 hypothetical protein; 48.7 17 0.00037 36.8 3.4 27 349-375 21-51 (229)
88 PF03447 NAD_binding_3: Homose 47.7 5.6 0.00012 35.2 -0.2 25 353-377 3-31 (117)
89 PF04127 DFP: DNA / pantothena 46.7 48 0.001 32.6 6.1 28 349-376 21-52 (185)
90 PRK00257 erythronate-4-phospha 46.7 34 0.00075 37.4 5.5 85 353-453 125-221 (381)
91 CHL00073 chlN photochlorophyll 46.5 91 0.002 35.1 8.8 60 310-376 275-346 (457)
92 PRK06849 hypothetical protein; 46.4 17 0.00036 39.1 3.1 90 353-445 14-110 (389)
93 PRK13581 D-3-phosphoglycerate 46.2 59 0.0013 36.9 7.5 88 353-453 149-244 (526)
94 PRK06500 short chain dehydroge 45.7 21 0.00046 34.8 3.5 35 353-390 16-50 (249)
95 PRK06180 short chain dehydroge 45.3 19 0.0004 36.4 3.1 34 353-389 14-47 (277)
96 PRK12826 3-ketoacyl-(acyl-carr 45.2 17 0.00038 35.3 2.8 22 353-374 16-37 (251)
97 PLN02928 oxidoreductase family 44.7 36 0.00079 36.5 5.3 99 353-453 168-276 (347)
98 PLN02688 pyrroline-5-carboxyla 44.0 35 0.00077 34.4 4.9 88 353-452 9-106 (266)
99 cd01080 NAD_bind_m-THF_DH_Cycl 43.7 58 0.0013 31.4 6.1 66 353-445 53-120 (168)
100 PRK07417 arogenate dehydrogena 43.6 38 0.00083 34.8 5.1 62 353-424 9-70 (279)
101 PRK09287 6-phosphogluconate de 42.6 42 0.00091 37.6 5.5 144 355-504 1-197 (459)
102 cd01078 NAD_bind_H4MPT_DH NADP 42.3 87 0.0019 30.1 7.1 88 353-444 38-132 (194)
103 PRK06182 short chain dehydroge 41.4 21 0.00045 35.8 2.7 31 353-386 13-43 (273)
104 PRK06718 precorrin-2 dehydroge 41.4 35 0.00075 33.8 4.2 71 353-430 19-89 (202)
105 PRK00436 argC N-acetyl-gamma-g 41.3 34 0.00074 36.6 4.5 86 353-442 12-100 (343)
106 PRK15059 tartronate semialdehy 41.0 63 0.0014 33.7 6.3 149 353-517 9-204 (292)
107 PRK05717 oxidoreductase; Valid 40.9 25 0.00055 34.7 3.2 31 353-386 20-50 (255)
108 COG0569 TrkA K+ transport syst 40.8 42 0.00091 33.7 4.8 107 353-469 9-125 (225)
109 PRK12829 short chain dehydroge 40.5 31 0.00067 34.0 3.7 33 353-388 21-53 (264)
110 PRK15409 bifunctional glyoxyla 39.8 68 0.0015 34.1 6.4 88 353-453 154-250 (323)
111 PRK14618 NAD(P)H-dependent gly 39.6 48 0.001 34.8 5.2 86 353-443 13-106 (328)
112 COG0345 ProC Pyrroline-5-carbo 38.8 1.2E+02 0.0025 31.8 7.7 102 353-465 10-118 (266)
113 TIGR01532 E4PD_g-proteo D-eryt 38.5 1.2E+02 0.0026 32.5 8.0 75 353-430 8-107 (325)
114 PRK06732 phosphopantothenate-- 38.4 28 0.0006 35.1 3.0 26 349-374 18-47 (229)
115 PRK08265 short chain dehydroge 38.2 29 0.00063 34.7 3.2 34 353-389 16-49 (261)
116 TIGR03325 BphB_TodD cis-2,3-di 38.0 30 0.00066 34.4 3.3 34 353-389 15-48 (262)
117 PRK05872 short chain dehydroge 37.8 34 0.00074 35.1 3.7 34 353-389 19-52 (296)
118 PRK10669 putative cation:proto 36.5 62 0.0014 36.8 5.8 34 353-389 426-459 (558)
119 PRK10538 malonic semialdehyde 36.3 29 0.00063 34.2 2.8 33 353-388 10-42 (248)
120 TIGR00465 ilvC ketol-acid redu 36.1 46 0.00099 35.4 4.4 59 353-422 12-70 (314)
121 TIGR02114 coaB_strep phosphopa 35.3 37 0.0008 34.2 3.4 26 349-374 17-46 (227)
122 PRK08263 short chain dehydroge 35.3 33 0.00072 34.5 3.1 34 353-389 13-46 (275)
123 COG3234 Uncharacterized protei 35.3 24 0.00052 34.7 1.9 31 242-281 163-193 (215)
124 PRK08594 enoyl-(acyl carrier p 35.1 54 0.0012 32.8 4.6 36 354-389 20-55 (257)
125 PRK07634 pyrroline-5-carboxyla 34.8 1E+02 0.0022 30.6 6.5 91 353-454 13-112 (245)
126 TIGR02415 23BDH acetoin reduct 34.8 31 0.00068 33.8 2.7 22 353-374 10-31 (254)
127 PF01210 NAD_Gly3P_dh_N: NAD-d 34.4 59 0.0013 30.5 4.4 99 353-456 8-125 (157)
128 COG1089 Gmd GDP-D-mannose dehy 34.1 53 0.0011 35.0 4.3 78 353-430 12-105 (345)
129 TIGR01327 PGDH D-3-phosphoglyc 34.0 1.3E+02 0.0029 34.2 7.9 80 353-445 147-233 (525)
130 PRK09242 tropinone reductase; 34.0 33 0.00071 33.9 2.7 31 353-386 19-49 (257)
131 PRK07454 short chain dehydroge 33.7 31 0.00067 33.7 2.5 30 353-385 16-45 (241)
132 PRK06482 short chain dehydroge 33.4 40 0.00087 33.8 3.3 34 353-389 12-45 (276)
133 PRK05993 short chain dehydroge 33.2 33 0.00072 34.6 2.7 32 353-387 14-45 (277)
134 TIGR00561 pntA NAD(P) transhyd 32.6 70 0.0015 36.5 5.3 86 353-441 173-284 (511)
135 PRK06813 homoserine dehydrogen 32.6 43 0.00093 36.2 3.5 147 353-505 11-206 (346)
136 PRK11150 rfaD ADP-L-glycero-D- 32.5 36 0.00078 34.8 2.8 24 353-376 9-32 (308)
137 PRK08267 short chain dehydroge 32.4 63 0.0014 32.0 4.5 34 353-389 11-44 (260)
138 COG0773 MurC UDP-N-acetylmuram 32.0 72 0.0016 35.9 5.2 26 357-385 21-46 (459)
139 PLN02700 homoserine dehydrogen 31.7 34 0.00074 37.5 2.6 154 353-511 12-229 (377)
140 cd00755 YgdL_like Family of ac 31.6 32 0.0007 34.9 2.3 32 353-384 20-52 (231)
141 PRK13403 ketol-acid reductoiso 31.5 40 0.00087 36.3 3.0 70 353-434 25-98 (335)
142 PRK04148 hypothetical protein; 31.5 55 0.0012 30.8 3.6 33 353-389 26-58 (134)
143 PRK07062 short chain dehydroge 31.2 36 0.00079 33.8 2.6 31 353-386 18-48 (265)
144 COG1179 Dinucleotide-utilizing 30.9 18 0.00039 37.5 0.3 85 353-441 39-129 (263)
145 COG1748 LYS9 Saccharopine dehy 30.6 64 0.0014 35.5 4.4 103 353-465 10-122 (389)
146 KOG2018|consensus 30.6 1.4E+02 0.003 32.4 6.6 82 270-376 21-106 (430)
147 PLN02358 glyceraldehyde-3-phos 30.6 2.4E+02 0.0052 30.5 8.7 40 353-393 14-54 (338)
148 PRK06138 short chain dehydroge 30.1 51 0.0011 32.2 3.4 22 353-374 15-36 (252)
149 PLN00203 glutamyl-tRNA reducta 29.9 1.1E+02 0.0023 35.0 6.2 86 353-444 275-372 (519)
150 PF02254 TrkA_N: TrkA-N domain 29.9 50 0.0011 28.6 3.0 92 353-451 7-107 (116)
151 PRK08251 short chain dehydroge 29.8 43 0.00092 32.8 2.7 31 353-386 12-42 (248)
152 PF02558 ApbA: Ketopantoate re 29.6 51 0.0011 30.1 3.1 66 353-423 7-79 (151)
153 PRK14852 hypothetical protein; 29.6 3E+02 0.0065 34.0 10.1 89 353-444 341-433 (989)
154 PRK08223 hypothetical protein; 29.6 31 0.00067 36.4 1.7 87 353-444 36-128 (287)
155 PF13460 NAD_binding_10: NADH( 29.5 43 0.00094 31.2 2.6 24 353-376 8-31 (183)
156 smart00859 Semialdhyde_dh Semi 29.5 76 0.0016 28.1 4.1 74 353-430 9-83 (122)
157 PRK06101 short chain dehydroge 29.5 74 0.0016 31.2 4.4 34 353-389 11-44 (240)
158 PRK13535 erythrose 4-phosphate 29.4 2.8E+02 0.0061 29.9 9.0 76 353-431 10-110 (336)
159 PRK13618 psbV cytochrome c-550 29.4 71 0.0015 31.0 4.1 64 211-292 95-160 (163)
160 smart00846 Gp_dh_N Glyceraldeh 29.4 2.5E+02 0.0053 26.6 7.7 31 353-384 9-40 (149)
161 PRK06200 2,3-dihydroxy-2,3-dih 29.4 58 0.0013 32.4 3.6 34 353-389 16-49 (263)
162 PRK08416 7-alpha-hydroxysteroi 29.2 59 0.0013 32.3 3.7 24 353-376 18-41 (260)
163 PRK07102 short chain dehydroge 28.8 29 0.00063 34.0 1.4 30 353-385 11-40 (243)
164 PRK07067 sorbitol dehydrogenas 28.6 64 0.0014 31.9 3.8 33 353-388 16-48 (257)
165 PRK00094 gpsA NAD(P)H-dependen 28.6 79 0.0017 32.7 4.6 65 353-421 10-81 (325)
166 KOG1502|consensus 28.5 75 0.0016 34.2 4.4 24 353-376 16-39 (327)
167 PRK07326 short chain dehydroge 28.5 88 0.0019 30.2 4.7 33 353-388 16-48 (237)
168 PRK07825 short chain dehydroge 28.4 58 0.0013 32.6 3.5 34 353-389 15-48 (273)
169 PF03435 Saccharop_dh: Sacchar 28.3 23 0.00049 38.1 0.5 63 353-422 7-78 (386)
170 PRK07069 short chain dehydroge 27.8 54 0.0012 32.0 3.1 22 353-374 9-30 (251)
171 PRK12936 3-ketoacyl-(acyl-carr 27.8 57 0.0012 31.6 3.2 33 353-388 16-48 (245)
172 PRK07530 3-hydroxybutyryl-CoA 27.5 1.1E+02 0.0023 31.6 5.3 31 353-386 13-43 (292)
173 PLN02712 arogenate dehydrogena 27.5 76 0.0017 37.3 4.7 89 353-453 378-474 (667)
174 PRK08655 prephenate dehydrogen 27.4 80 0.0017 35.0 4.6 78 353-442 10-93 (437)
175 PRK13302 putative L-aspartate 27.4 89 0.0019 32.3 4.7 78 353-440 15-98 (271)
176 PF03721 UDPG_MGDP_dh_N: UDP-g 27.4 74 0.0016 31.0 3.9 32 353-387 9-40 (185)
177 PRK08328 hypothetical protein; 27.3 46 0.00099 33.6 2.5 90 353-444 36-129 (231)
178 PLN02819 lysine-ketoglutarate 27.1 1.3E+02 0.0029 37.2 6.7 81 353-442 578-681 (1042)
179 PRK06079 enoyl-(acyl carrier p 26.8 71 0.0015 31.8 3.8 21 354-374 20-40 (252)
180 PRK11880 pyrroline-5-carboxyla 26.7 1.6E+02 0.0035 29.7 6.4 89 353-453 11-106 (267)
181 PRK06198 short chain dehydroge 26.7 52 0.0011 32.4 2.8 21 353-373 16-37 (260)
182 PF00975 Thioesterase: Thioest 26.5 48 0.001 32.0 2.4 84 270-376 16-102 (229)
183 PRK12549 shikimate 5-dehydroge 26.3 2.4E+02 0.0051 29.4 7.6 107 353-465 136-249 (284)
184 TIGR03649 ergot_EASG ergot alk 26.2 54 0.0012 33.1 2.8 22 353-374 9-30 (285)
185 PRK08277 D-mannonate oxidoredu 26.2 54 0.0012 32.9 2.8 30 353-385 20-49 (278)
186 PRK14620 NAD(P)H-dependent gly 26.1 87 0.0019 32.8 4.4 33 353-388 9-41 (326)
187 PRK09135 pteridine reductase; 26.1 60 0.0013 31.4 3.1 23 353-375 16-38 (249)
188 PRK08643 acetoin reductase; Va 26.1 66 0.0014 31.7 3.4 22 353-374 12-33 (256)
189 PRK13301 putative L-aspartate 25.5 98 0.0021 32.4 4.5 101 353-465 11-121 (267)
190 PRK08213 gluconate 5-dehydroge 25.5 1.3E+02 0.0029 29.6 5.4 22 353-374 22-43 (259)
191 PRK05653 fabG 3-ketoacyl-(acyl 25.4 75 0.0016 30.6 3.6 22 353-374 15-36 (246)
192 PRK05867 short chain dehydroge 25.3 1E+02 0.0022 30.4 4.5 32 353-387 19-50 (253)
193 PRK09260 3-hydroxybutyryl-CoA 25.3 1.1E+02 0.0024 31.4 5.0 32 353-387 10-41 (288)
194 PRK06196 oxidoreductase; Provi 25.2 68 0.0015 33.1 3.4 32 353-387 36-67 (315)
195 PRK06172 short chain dehydroge 25.1 56 0.0012 32.1 2.7 22 353-374 17-38 (253)
196 KOG0725|consensus 25.0 83 0.0018 32.5 4.0 32 354-388 19-50 (270)
197 PLN02725 GDP-4-keto-6-deoxyman 24.9 79 0.0017 31.9 3.8 22 353-374 7-28 (306)
198 COG3967 DltE Short-chain dehyd 24.9 1.1E+02 0.0023 31.4 4.4 35 354-391 16-50 (245)
199 PRK08339 short chain dehydroge 24.3 1E+02 0.0023 30.8 4.5 32 353-387 18-49 (263)
200 PRK09424 pntA NAD(P) transhydr 24.1 87 0.0019 35.7 4.2 78 353-433 174-276 (509)
201 COG4221 Short-chain alcohol de 24.1 1E+02 0.0022 31.9 4.3 36 353-391 16-51 (246)
202 TIGR03206 benzo_BadH 2-hydroxy 24.0 60 0.0013 31.6 2.6 22 353-374 13-34 (250)
203 PRK11064 wecC UDP-N-acetyl-D-m 24.0 1E+02 0.0022 33.9 4.6 31 353-386 12-42 (415)
204 PLN02206 UDP-glucuronate decar 23.9 1.2E+02 0.0027 33.5 5.3 23 353-375 129-151 (442)
205 TIGR03855 NAD_NadX aspartate d 23.8 98 0.0021 31.4 4.1 89 367-465 1-96 (229)
206 PRK12825 fabG 3-ketoacyl-(acyl 23.8 66 0.0014 31.0 2.8 24 353-376 16-39 (249)
207 PRK05875 short chain dehydroge 23.4 71 0.0015 31.9 3.1 22 353-374 17-38 (276)
208 TIGR01534 GAPDH-I glyceraldehy 23.3 5E+02 0.011 28.0 9.5 39 353-393 8-49 (327)
209 PRK06130 3-hydroxybutyryl-CoA 23.3 1.7E+02 0.0036 30.4 5.9 97 353-453 13-127 (311)
210 PLN02858 fructose-bisphosphate 23.3 78 0.0017 40.4 3.9 145 353-513 333-528 (1378)
211 PRK12744 short chain dehydroge 23.3 88 0.0019 30.9 3.7 22 353-374 18-39 (257)
212 PRK06194 hypothetical protein; 23.3 1E+02 0.0022 31.0 4.1 31 353-386 16-46 (287)
213 PRK06949 short chain dehydroge 23.1 1.1E+02 0.0024 30.0 4.3 31 353-386 19-49 (258)
214 PRK07677 short chain dehydroge 23.0 77 0.0017 31.2 3.2 31 353-386 11-41 (252)
215 PRK12828 short chain dehydroge 22.9 77 0.0017 30.4 3.1 22 353-374 17-38 (239)
216 PRK08507 prephenate dehydrogen 22.7 1.2E+02 0.0025 31.1 4.5 76 353-440 9-90 (275)
217 PRK08268 3-hydroxy-acyl-CoA de 22.6 1.4E+02 0.0031 33.7 5.6 31 353-386 16-46 (507)
218 PF01113 DapB_N: Dihydrodipico 22.5 25 0.00054 31.9 -0.4 24 353-376 10-34 (124)
219 PRK15425 gapA glyceraldehyde-3 22.4 4.1E+02 0.0088 28.7 8.6 39 353-393 11-50 (331)
220 PRK08063 enoyl-(acyl carrier p 22.4 80 0.0017 30.8 3.1 24 353-376 14-37 (250)
221 PRK14175 bifunctional 5,10-met 22.4 2.2E+02 0.0047 30.1 6.5 65 353-444 167-233 (286)
222 PLN02253 xanthoxin dehydrogena 22.3 95 0.0021 31.1 3.7 21 353-373 28-48 (280)
223 PRK12743 oxidoreductase; Provi 22.1 89 0.0019 30.9 3.4 24 353-376 12-35 (256)
224 COG4567 Response regulator con 22.1 44 0.00095 32.5 1.1 37 242-293 32-68 (182)
225 PRK08945 putative oxoacyl-(acy 22.0 1.2E+02 0.0025 29.8 4.3 30 353-385 22-51 (247)
226 PRK09496 trkA potassium transp 21.9 1.3E+02 0.0029 32.6 5.0 86 353-444 9-103 (453)
227 PRK00258 aroE shikimate 5-dehy 21.8 4.1E+02 0.0089 27.3 8.3 104 353-465 132-243 (278)
228 PRK07831 short chain dehydroge 21.8 74 0.0016 31.5 2.8 20 354-373 29-48 (262)
229 PRK03562 glutathione-regulated 21.7 4E+02 0.0086 31.0 9.0 92 353-451 409-509 (621)
230 TIGR00036 dapB dihydrodipicoli 21.7 1.5E+02 0.0033 30.5 5.1 103 353-465 11-126 (266)
231 PRK13940 glutamyl-tRNA reducta 21.6 2E+02 0.0043 31.8 6.3 83 353-444 190-276 (414)
232 PRK07023 short chain dehydroge 21.5 83 0.0018 30.7 3.1 22 353-374 11-32 (243)
233 TIGR02197 heptose_epim ADP-L-g 21.5 98 0.0021 31.4 3.6 22 353-374 8-30 (314)
234 PRK07523 gluconate 5-dehydroge 21.4 1.3E+02 0.0028 29.6 4.4 30 353-385 20-49 (255)
235 PF01262 AlaDh_PNT_C: Alanine 21.4 78 0.0017 30.0 2.7 86 353-441 29-139 (168)
236 PRK05579 bifunctional phosphop 21.4 90 0.002 34.4 3.5 26 349-374 206-235 (399)
237 PRK07890 short chain dehydroge 21.4 1.3E+02 0.0029 29.4 4.5 31 353-386 15-45 (258)
238 TIGR01777 yfcH conserved hypot 21.3 78 0.0017 31.6 2.9 24 353-376 8-31 (292)
239 COG1648 CysG Siroheme synthase 21.3 1.5E+02 0.0032 29.8 4.8 37 353-391 21-57 (210)
240 PRK05876 short chain dehydroge 21.3 1.3E+02 0.0027 30.6 4.4 31 353-386 16-46 (275)
241 CHL00194 ycf39 Ycf39; Provisio 21.2 76 0.0016 32.9 2.8 22 353-374 10-31 (317)
242 PRK06935 2-deoxy-D-gluconate 3 21.2 95 0.002 30.7 3.4 22 353-374 25-46 (258)
243 PRK08690 enoyl-(acyl carrier p 21.2 98 0.0021 31.0 3.6 20 354-373 19-38 (261)
244 PF13561 adh_short_C2: Enoyl-( 20.9 1E+02 0.0022 30.2 3.6 28 353-383 6-33 (241)
245 PRK14192 bifunctional 5,10-met 20.9 1.7E+02 0.0036 30.8 5.2 65 353-444 168-234 (283)
246 PRK07063 short chain dehydroge 20.9 1.3E+02 0.0029 29.6 4.4 32 353-387 17-48 (260)
247 PRK12939 short chain dehydroge 20.9 1.5E+02 0.0033 28.7 4.8 30 353-385 17-46 (250)
248 TIGR01829 AcAcCoA_reduct aceto 20.9 90 0.0019 30.2 3.1 22 353-374 10-31 (242)
249 PRK07074 short chain dehydroge 20.6 1.4E+02 0.0031 29.3 4.5 32 353-387 12-43 (257)
250 PRK05808 3-hydroxybutyryl-CoA 20.6 1.5E+02 0.0032 30.4 4.7 29 353-384 12-40 (282)
251 PF13241 NAD_binding_7: Putati 20.4 57 0.0012 28.5 1.4 24 353-376 16-39 (103)
252 PRK06522 2-dehydropantoate 2-r 20.4 2.2E+02 0.0047 29.0 6.0 84 353-444 9-103 (304)
253 COG1712 Predicted dinucleotide 20.4 1.7E+02 0.0037 30.2 5.0 72 353-433 9-82 (255)
254 PRK13303 L-aspartate dehydroge 20.3 2E+02 0.0043 29.6 5.6 102 353-465 10-120 (265)
255 PRK13394 3-hydroxybutyrate deh 20.3 1.3E+02 0.0028 29.5 4.2 30 353-385 17-46 (262)
256 PRK12429 3-hydroxybutyrate deh 20.2 1.4E+02 0.003 29.1 4.4 30 353-385 14-43 (258)
257 TIGR02395 rpoN_sigma RNA polym 20.2 2.8E+02 0.006 30.9 7.0 156 377-547 193-359 (429)
258 PRK07985 oxidoreductase; Provi 20.2 1.2E+02 0.0027 31.0 4.1 21 353-373 59-79 (294)
259 PF00044 Gp_dh_N: Glyceraldehy 20.2 2E+02 0.0043 27.4 5.1 42 353-395 9-51 (151)
260 PRK05854 short chain dehydroge 20.1 80 0.0017 32.8 2.7 30 353-385 24-53 (313)
261 PRK06841 short chain dehydroge 20.0 94 0.002 30.5 3.1 22 353-374 25-46 (255)
262 PRK14851 hypothetical protein; 20.0 2.3E+02 0.005 33.5 6.7 89 353-444 52-144 (679)
No 1
>PRK14030 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=5.7e-86 Score=707.66 Aligned_cols=342 Identities=22% Similarity=0.284 Sum_probs=315.0
Q ss_pred CCCCHHHHHHHHHhhhhhhccccchhhhhhccchhhhhhhhhhhhhhcCCCCcEEEEEEeEEcCCCcEEEEeeEEEEecC
Q psy8846 171 ENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHST 250 (568)
Q Consensus 171 ~~~~~~~~~~~~~~kAa~ildpk~~~~l~~~~~~~~~r~~~~~I~~~I~~~~rv~~v~~pv~~d~G~~~~~~gyrv~h~~ 250 (568)
.+++||+++..++++++.+++.. ++ ....++++.|+.|+|+++|++||.||+|++++|+|||||||+
T Consensus 16 ~e~eF~~~~~~~~~~~~~~l~~~----------~~---y~~~~~~~~l~~p~r~i~~~vp~~~d~G~~~~~~GyRvqhn~ 82 (445)
T PRK14030 16 GESEYLQAVKEVLLSVEDVYNQH----------PE---FEKAKIIERIVEPDRIFTFRVPWVDDKGEVQVNLGYRVQFNN 82 (445)
T ss_pred CChHHHHHHHHHHHHHHHHHccC----------hh---hhhhHHHHHhhcCcEEEEEEEEEEECCCcEEEEeeEEEEecC
Confidence 68999999999999999999942 00 112349999999999999999999999999999999999999
Q ss_pred CCCCCCCCeeeeCCCCHHHHHHHHHHhhHhhhhcCCCCCCceeEeeCCCCCCCHHHHHHHHHHHHHHHhhcCccccccCC
Q psy8846 251 HRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAV 330 (568)
Q Consensus 251 ~~GP~kGGiR~~p~v~~dev~aLA~~MT~K~Al~~lP~GGaKggI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~di 330 (568)
++||+||||||||+++++|+++||+||||||||+|||||||||||.+||+.+|+.||||+||+|+++|.+ +|||+.||
T Consensus 83 ~lGP~kGGiR~~p~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~f~~~L~~--~iGp~~DI 160 (445)
T PRK14030 83 AIGPYKGGIRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFSPRGKSDAEIMRFCQAFMLELWR--HIGPDTDV 160 (445)
T ss_pred cccCCCCcEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeeecCCCccCCHHHHHHHHHHHHHHHHH--hcCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997 89999999
Q ss_pred CCCc----ccccch---hhhcccCc-----------------e----------------------------eec--cCHH
Q psy8846 331 PGAR----AREGNV---TFNLLFHY-----------------K----------------------------FSS--GPVS 356 (568)
Q Consensus 331 papD----~~~maw---~y~~~~G~-----------------R----------------------------~~~--GnVG 356 (568)
|+|| +++|+| +|+++.|+ | .+| ||||
T Consensus 161 pApDvgt~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG 240 (445)
T PRK14030 161 PAGDIGVGGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGNVA 240 (445)
T ss_pred cccccCCCHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHH
Confidence 9999 999999 89875432 1 122 9999
Q ss_pred HHHHHHHHHCCCeEeEeCCC--------CCCHHH---HHHHHHhcCCcc-----cCCCCeecCCCCcccccceEEeeccc
Q psy8846 357 MYLPQIWVQEKGKCPGLPTH--------TRKPLA---LEEYKLDNGTIV-----GFPGAVPYEGENLMYEPCDIFVPAAV 420 (568)
Q Consensus 357 ~~~A~~L~~~GakvvaVsD~--------GiD~~~---L~~~~~~~g~v~-----~~~ga~~i~~~~ll~~~cDIliPaAl 420 (568)
+++|++|++.|||||+|||+ |||+++ |.++++++|++. +||+++.++++++|+++||||+|||+
T Consensus 241 ~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~~~~~~~~~cDVliPcAl 320 (445)
T PRK14030 241 WGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAGKKPWEQKVDIALPCAT 320 (445)
T ss_pred HHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcCCccceeccccEEeeccc
Confidence 99999999999999999999 899988 889999999886 88999999999999999999999999
Q ss_pred cCCCChhhHhcc---cceEEEecCCcchHHHHHHHhccCCCcccccCc-------------HHHHhhccCCCcHHHHHHH
Q psy8846 421 EKVITKNNAHKI---QAKIIAEAANESVQESLERRFGNVGGRIPVTPS-------------ESFQKRISGASEKDIVHSG 484 (568)
Q Consensus 421 ~~~It~~na~~i---~AkiIvE~AN~~~~~~l~~~l~~~GggI~vvPd-------------e~~q~~~~~~we~e~V~~~ 484 (568)
+|+||++||++| +||+|+||||+|+++...+.|.++ ||+|+|| ||.||.++.+|++|+|+++
T Consensus 321 ~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~iL~~r--GI~~vPD~~aNAGGVivs~~E~~qn~~~~~w~~eeV~~~ 398 (445)
T PRK14030 321 QNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDKFIAA--KQLFAPGKAVNAGGVATSGLEMSQNAMHLSWSAEEVDEK 398 (445)
T ss_pred cccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHC--CCEEeCcceecCCCeeeehhhhhccccccCcCHHHHHHH
Confidence 999999999999 999999999999877777777666 5888888 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCChhhhhhhheee-c-ccCccccee
Q psy8846 485 LDYTMERSARAIMKTAMKYNLGHLDINAHACVTGKP-I-NQGGIHGRI 530 (568)
Q Consensus 485 L~~~M~~a~~~V~~~a~~~~~~~~dlR~AAyi~Ai~-i-~a~~~~G~~ 530 (568)
|+++|.++|+.|++.+++++.. +|||+|||++|+. | +||..+||+
T Consensus 399 L~~~m~~~~~~v~~~~~~~~~~-~~lr~aA~~~a~~rva~a~~~rG~~ 445 (445)
T PRK14030 399 LHQIMSGIHEQCVKYGKEGDGY-INYVKGANIAGFMKVAKAMLAQGVV 445 (445)
T ss_pred HHHHHHHHHHHHHHHhhccCCC-CCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998732 6899999999999 7 999999984
No 2
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-85 Score=691.22 Aligned_cols=332 Identities=28% Similarity=0.431 Sum_probs=309.2
Q ss_pred CHHHHHHHHHhhhhhhccccchhhhhhccchhhhhhhhhhhhhhcCCCCcEEEEEEeEEcCCCcEEEEeeEEEEecCCCC
Q psy8846 174 KFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRT 253 (568)
Q Consensus 174 ~~~~~~~~~~~kAa~ildpk~~~~l~~~~~~~~~r~~~~~I~~~I~~~~rv~~v~~pv~~d~G~~~~~~gyrv~h~~~~G 253 (568)
++|+++..++.++...+. +.++++++|..|+|++++++||.+|+|++++|+|||||||+++|
T Consensus 2 ~~~~~a~~~~~~~~~~~~------------------~~~~~~e~l~~p~r~i~~~i~v~~d~g~~~~~~g~rvqhn~a~G 63 (411)
T COG0334 2 NEFEQAVKELEKALEPLY------------------LDEGVLERLKEPERVIQVRIPVRMDDGSVKVFRGYRVQHNSALG 63 (411)
T ss_pred cHHHHHHHHHHHhhhhcc------------------CchhHHHHhcCceeEEEEEEEEEEcCCcEeeeEEEEEEecCCcC
Confidence 467888888888888766 35899999999999999999999999999999999999999999
Q ss_pred CCCCCeeeeCCCCHHHHHHHHHHhhHhhhhcCCCCCCceeEeeCCCCCCCHHHHHHHHHHHHHHHhhcCccccccCCCCC
Q psy8846 254 PCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPGA 333 (568)
Q Consensus 254 P~kGGiR~~p~v~~dev~aLA~~MT~K~Al~~lP~GGaKggI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~dipap 333 (568)
|+||||||||+||++||++||+||||||||++||||||||||++||+.+|..|+||++|+|+++|.+ ++||+.|||||
T Consensus 64 P~kGGiRfhP~v~~~ev~~Ls~~MT~Knal~~Lp~GGGKGgi~~DPk~~S~~E~erl~raf~~~i~~--~iGp~~dIpAp 141 (411)
T COG0334 64 PYKGGVRFHPYVTLEEVKALSFWMTLKNALAGLPYGGGKGGIIVDPKGLSDGELERLSRAFGRAIYR--LIGPDTDIPAP 141 (411)
T ss_pred CccCceecCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCceeeeCCcccCCHHHHHHHHHHHHHHHHH--hcCCCcEeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred c----ccccch---hhhcccCc------------------e----------------------------eec--cCHHHH
Q psy8846 334 R----AREGNV---TFNLLFHY------------------K----------------------------FSS--GPVSMY 358 (568)
Q Consensus 334 D----~~~maw---~y~~~~G~------------------R----------------------------~~~--GnVG~~ 358 (568)
| +|+|+| +|+++.|. | .+| ||||++
T Consensus 142 Dvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~ 221 (411)
T COG0334 142 DVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGVFYAIREALKALGDDLEGARVAVQGFGNVGQY 221 (411)
T ss_pred ccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCcccceehHHHHHHHHHHcCCCcCCCEEEEECccHHHHH
Confidence 9 999999 88876532 1 122 999999
Q ss_pred HHHHHHHCCCeEeEeCCC--------CCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccccCCCChhhHh
Q psy8846 359 LPQIWVQEKGKCPGLPTH--------TRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAH 430 (568)
Q Consensus 359 ~A~~L~~~GakvvaVsD~--------GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~~It~~na~ 430 (568)
+|++|++.|||||++||+ |||+++|.+.+++.+++.+|++++.++++++|+++||||+|||++|+||++||+
T Consensus 222 aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~~cDIl~PcA~~n~I~~~na~ 301 (411)
T COG0334 222 AAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEVDCDILIPCALENVITEDNAD 301 (411)
T ss_pred HHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccccCcEEcccccccccchhhHH
Confidence 999999999999999999 999999998888889999999999999999999999999999999999999999
Q ss_pred cccceEEEecCCcchHHHHHHHhccCCCcccccCc-------------HHHHhhccCCCcHHHHHHHHHHHHHHHHHHHH
Q psy8846 431 KIQAKIIAEAANESVQESLERRFGNVGGRIPVTPS-------------ESFQKRISGASEKDIVHSGLDYTMERSARAIM 497 (568)
Q Consensus 431 ~i~AkiIvE~AN~~~~~~l~~~l~~~GggI~vvPd-------------e~~q~~~~~~we~e~V~~~L~~~M~~a~~~V~ 497 (568)
+|+||+|+||||+|+++.+.+.|.++ ||+|+|| ||.||+++++|++|+|+++|+.+|.++|+.++
T Consensus 302 ~l~ak~V~EgAN~P~t~eA~~i~~er--GIl~~PD~laNAGGV~vS~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~ 379 (411)
T COG0334 302 QLKAKIVVEGANGPTTPEADEILLER--GILVVPDILANAGGVIVSYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVY 379 (411)
T ss_pred HhhhcEEEeccCCCCCHHHHHHHHHC--CCEEcChhhccCcCeeeehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876655555555 4777777 99999999999999999999999999999999
Q ss_pred HHHHhccCCCCChhhhhhhheee-c-ccCccccee
Q psy8846 498 KTAMKYNLGHLDINAHACVTGKP-I-NQGGIHGRI 530 (568)
Q Consensus 498 ~~a~~~~~~~~dlR~AAyi~Ai~-i-~a~~~~G~~ 530 (568)
+.+++++ +|+|+|||++|+. | +||..|||+
T Consensus 380 ~~~~~~~---~~~r~aA~~~a~~Rva~Am~~~G~~ 411 (411)
T COG0334 380 QAAKEYG---VDLRTAAYILAFERVADAMKARGWY 411 (411)
T ss_pred HHHHhcC---CCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999998 7999999999999 7 999999985
No 3
>PLN02477 glutamate dehydrogenase
Probab=100.00 E-value=3.4e-85 Score=698.58 Aligned_cols=332 Identities=29% Similarity=0.444 Sum_probs=313.2
Q ss_pred CHHHHHHHHHhhhhhhccccchhhhhhccchhhhhhhhhhhhhhcCCCCcEEEEEEeEEcCCCcEEEEeeEEEEecCCCC
Q psy8846 174 KFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRT 253 (568)
Q Consensus 174 ~~~~~~~~~~~kAa~ildpk~~~~l~~~~~~~~~r~~~~~I~~~I~~~~rv~~v~~pv~~d~G~~~~~~gyrv~h~~~~G 253 (568)
++|+++..++++|+..++. .+++.++|+.|+|+++|++||.||||++++|+|||||||+++|
T Consensus 2 ~~~~~~~~~~~~a~~~~~~------------------~~~~~~~l~~p~r~~~v~~p~~~d~g~~~~~~gyRvqh~~~~G 63 (410)
T PLN02477 2 NALAATNRNFREAARLLGL------------------DSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNARG 63 (410)
T ss_pred CHHHHHHHHHHHHHHHcCC------------------CHHHHHHHhcCceEEEEEEEEEECCCcEEEeeeeEeeecCccC
Confidence 4789999999999999993 5889999999999999999999999999999999999999999
Q ss_pred CCCCCeeeeCCCCHHHHHHHHHHhhHhhhhcCCCCCCceeEeeCCCCCCCHHHHHHHHHHHHHHHhhcCccccccCCCCC
Q psy8846 254 PCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPGA 333 (568)
Q Consensus 254 P~kGGiR~~p~v~~dev~aLA~~MT~K~Al~~lP~GGaKggI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~dipap 333 (568)
|+||||||||++|++||++||+||||||||+|||||||||||.+||+++|..|+|+++|+|+++|.+ ++||+.|||+|
T Consensus 64 P~kGGiR~~p~v~~~ev~~La~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~e~e~l~r~f~~~l~~--~iG~~~Dipap 141 (410)
T PLN02477 64 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCDPRDLSESELERLTRVFTQKIHD--LIGIHTDVPAP 141 (410)
T ss_pred CCCCCeeecCCCCHHHHHHHHHHHHHHHHhcCCCCcCceeeeccCCccCCHHHHHHHHHHHHHHHHH--hcCCCCCcccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999988 99999999999
Q ss_pred c----ccccch---hhhccc--------Cc---------e----------------------------eec--cCHHHHH
Q psy8846 334 R----AREGNV---TFNLLF--------HY---------K----------------------------FSS--GPVSMYL 359 (568)
Q Consensus 334 D----~~~maw---~y~~~~--------G~---------R----------------------------~~~--GnVG~~~ 359 (568)
| +++|+| +|+++. |. | .+| ||||+++
T Consensus 142 Dvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~ 221 (410)
T PLN02477 142 DMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWA 221 (410)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHH
Confidence 9 999999 887632 21 1 122 9999999
Q ss_pred HHHHHHCCCeEeEeCCC--------CCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccccCCCChhhHhc
Q psy8846 360 PQIWVQEKGKCPGLPTH--------TRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHK 431 (568)
Q Consensus 360 A~~L~~~GakvvaVsD~--------GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~~It~~na~~ 431 (568)
|++|++.|+|||+|||+ |||+++|.++++++|++.+|++++.++++++|.++||||+|||++++||++||++
T Consensus 222 A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~~~DvliP~Al~~~I~~~na~~ 301 (410)
T PLN02477 222 AQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVEPCDVLIPAALGGVINKENAAD 301 (410)
T ss_pred HHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceeccccEEeeccccccCCHhHHHH
Confidence 99999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEecCCcchHHHHHHHhccCCCcccccCc-------------HHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy8846 432 IQAKIIAEAANESVQESLERRFGNVGGRIPVTPS-------------ESFQKRISGASEKDIVHSGLDYTMERSARAIMK 498 (568)
Q Consensus 432 i~AkiIvE~AN~~~~~~l~~~l~~~GggI~vvPd-------------e~~q~~~~~~we~e~V~~~L~~~M~~a~~~V~~ 498 (568)
|+||+|+||||+|+++...+.|.++ ||+|+|| ||+||.++.+|++++|+++|+++|.++|++|++
T Consensus 302 i~ak~I~egAN~p~t~ea~~~L~~r--GI~~~PD~~aNaGGVivs~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~ 379 (410)
T PLN02477 302 VKAKFIVEAANHPTDPEADEILRKK--GVVVLPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNRELDRYMTDAFKALKE 379 (410)
T ss_pred cCCcEEEeCCCCCCCHHHHHHHHHC--CcEEEChHHhCCCCeeeeHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999977777777666 5888888 899999999999999999999999999999999
Q ss_pred HHHhccCCCCChhhhhhhheee-c-ccCccccee
Q psy8846 499 TAMKYNLGHLDINAHACVTGKP-I-NQGGIHGRI 530 (568)
Q Consensus 499 ~a~~~~~~~~dlR~AAyi~Ai~-i-~a~~~~G~~ 530 (568)
.+++++ +++|+|||++|+. | ++|..|||.
T Consensus 380 ~a~~~~---~~~r~aA~~~a~~rv~~a~~~rG~~ 410 (410)
T PLN02477 380 MCKTHN---CSLRMGAFTLGVNRVARATVLRGWE 410 (410)
T ss_pred HHHHHC---cCHHHHHHHHHHHHHHHHHHhhCCC
Confidence 999998 7999999999999 7 999999973
No 4
>PRK09414 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=8.7e-83 Score=685.03 Aligned_cols=342 Identities=26% Similarity=0.330 Sum_probs=314.9
Q ss_pred CCCCHHHHHHHHHhhhhhhccccchhhhhhccchhhhhhhhhhhhhhcCCCCcEEEEEEeEEcCCCcEEEEeeEEEEecC
Q psy8846 171 ENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHST 250 (568)
Q Consensus 171 ~~~~~~~~~~~~~~kAa~ildpk~~~~l~~~~~~~~~r~~~~~I~~~I~~~~rv~~v~~pv~~d~G~~~~~~gyrv~h~~ 250 (568)
.+++||+++..++++++.+++.. ++ ....+++++|+.|+|+++|++||.||+|++++|+|||||||+
T Consensus 20 ~~~~~~~~~~~~~~~a~~~l~~~----------~~---~~~~~~~~~l~~p~r~i~v~~pv~~d~g~~~~~~gyRv~h~~ 86 (445)
T PRK09414 20 GQPEFHQAVREVLESLWPVLEKN----------PE---YAEAGILERLVEPERVIIFRVPWVDDKGQVQVNRGFRVQFNS 86 (445)
T ss_pred CCchHHHHHHHHHHHHHHHhccC----------hh---hhhhhHHHHhcCCceEEEEEEEEEECCCcEEEEeeeEEEecC
Confidence 68899999999999999999942 11 012459999999999999999999999999999999999999
Q ss_pred CCCCCCCCeeeeCCCCHHHHHHHHHHhhHhhhhcCCCCCCceeEeeCCCCCCCHHHHHHHHHHHHHHHhhcCccccccCC
Q psy8846 251 HRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAV 330 (568)
Q Consensus 251 ~~GP~kGGiR~~p~v~~dev~aLA~~MT~K~Al~~lP~GGaKggI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~di 330 (568)
++||+||||||||+++++|+.+||+||||||||+|||||||||||.+||+.+|+.||||++|+|+++|.+ ++||++||
T Consensus 87 ~~GPakGG~R~~p~v~~~ev~aLA~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~~~~~l~~--~iG~~~Di 164 (445)
T PRK09414 87 AIGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLPIGGGKGGSDFDPKGKSDAEIMRFCQSFMTELYR--HIGPDTDV 164 (445)
T ss_pred CCcCCCCceeecCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeeeecCCccCCHHHHHHHHHHHHHHHHH--hcCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred CCCc----ccccch---hhhcccCc-----------------e----------------------------eec--cCHH
Q psy8846 331 PGAR----AREGNV---TFNLLFHY-----------------K----------------------------FSS--GPVS 356 (568)
Q Consensus 331 papD----~~~maw---~y~~~~G~-----------------R----------------------------~~~--GnVG 356 (568)
|+|| +++|+| +|+++.|+ | .+| ||||
T Consensus 165 papDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG 244 (445)
T PRK09414 165 PAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVA 244 (445)
T ss_pred CccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHH
Confidence 9999 999999 88766432 1 122 9999
Q ss_pred HHHHHHHHHCCCeEeEeCCC--------CCCHHHHHHHHHhc-CCcccCC---CCeecCCCCcccccceEEeeccccCCC
Q psy8846 357 MYLPQIWVQEKGKCPGLPTH--------TRKPLALEEYKLDN-GTIVGFP---GAVPYEGENLMYEPCDIFVPAAVEKVI 424 (568)
Q Consensus 357 ~~~A~~L~~~GakvvaVsD~--------GiD~~~L~~~~~~~-g~v~~~~---ga~~i~~~~ll~~~cDIliPaAl~~~I 424 (568)
+++|++|++.|+|||+|||+ |||+++|.++++++ |+|.+|+ +++.++++++|+++||||+|||++|+|
T Consensus 245 ~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~~~d~DVliPaAl~n~I 324 (445)
T PRK09414 245 IYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPWSVPCDIALPCATQNEL 324 (445)
T ss_pred HHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCccccccCCcEEEecCCcCcC
Confidence 99999999999999999997 99999999999987 6899997 678899999999999999999999999
Q ss_pred ChhhHhcc---cceEEEecCCcchHHHHHHHhccCCCcccccCc-------------HHHHhhccCCCcHHHHHHHHHHH
Q psy8846 425 TKNNAHKI---QAKIIAEAANESVQESLERRFGNVGGRIPVTPS-------------ESFQKRISGASEKDIVHSGLDYT 488 (568)
Q Consensus 425 t~~na~~i---~AkiIvE~AN~~~~~~l~~~l~~~GggI~vvPd-------------e~~q~~~~~~we~e~V~~~L~~~ 488 (568)
|.+||.++ +||+|+||||+|+++...+.|.++ ||.|+|| ||.||.+..+|++++|+++|+++
T Consensus 325 t~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L~~r--GI~~vPD~laNaGGVivs~~E~~qn~~~~~w~~~~V~~~l~~~ 402 (445)
T PRK09414 325 DEEDAKTLIANGVKAVAEGANMPSTPEAIEVFLEA--GVLFAPGKAANAGGVATSGLEMSQNASRLSWTFEEVDARLHDI 402 (445)
T ss_pred CHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHHHHC--CcEEECchhhcCCCeeeeehhhccccccceecHHHHHHHHHHH
Confidence 99999999 899999999999977777777666 5888888 88899999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCChhhhhhhheee-c-ccCccccee
Q psy8846 489 MERSARAIMKTAMKYNLGHLDINAHACVTGKP-I-NQGGIHGRI 530 (568)
Q Consensus 489 M~~a~~~V~~~a~~~~~~~~dlR~AAyi~Ai~-i-~a~~~~G~~ 530 (568)
|.++|+++++++++++.. ++||+|||++|+. | +||..|||+
T Consensus 403 m~~~~~~~~~~~~~~~~~-~~~r~aA~~~a~~rv~~a~~~rG~~ 445 (445)
T PRK09414 403 MKNIHHACVETAEEYGKP-GNYVAGANIAGFVKVADAMLAQGVI 445 (445)
T ss_pred HHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999843 6999999999999 7 999999985
No 5
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=100.00 E-value=3.6e-81 Score=669.86 Aligned_cols=340 Identities=24% Similarity=0.320 Sum_probs=309.8
Q ss_pred CCCCHHHHHHHHHhhhhhhccccchhhhhhccchhhhhhhhhhhhhhcCCCCcEEEEEEeEEcCCCcEEEEeeEEEEecC
Q psy8846 171 ENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHST 250 (568)
Q Consensus 171 ~~~~~~~~~~~~~~kAa~ildpk~~~~l~~~~~~~~~r~~~~~I~~~I~~~~rv~~v~~pv~~d~G~~~~~~gyrv~h~~ 250 (568)
.++.|++.+...+..-..+++.+ |+ | .++++.|..|+|+++|++||.+|+|++++|+|||||||+
T Consensus 27 ~~~ef~qa~~e~~~~~~~~~~~~----------~~----y-~~i~e~l~~Per~i~~~vp~~~D~G~v~v~~GyRVqhn~ 91 (454)
T PTZ00079 27 NQPEFLQAFHEVMTSLKPLFQKN----------PK----Y-LGVLERLVEPERVIQFRVPWVDDKGEQRVNRGFRVQYNS 91 (454)
T ss_pred CChHHHHHHHHHHHHHHHHHHhC----------hh----H-HHHHHHhccCceEEEEEEEEEECCCCEEEEeeEEEEEcC
Confidence 67899999999988888877732 22 2 379999999999999999999999999999999999999
Q ss_pred CCCCCCCCeeeeCCCCHHHHHHHHHHhhHhhhhcCCCCCCceeEeeCCCCCCCHHHHHHHHHHHHHHHhhcCccccccCC
Q psy8846 251 HRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAV 330 (568)
Q Consensus 251 ~~GP~kGGiR~~p~v~~dev~aLA~~MT~K~Al~~lP~GGaKggI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~di 330 (568)
++||+||||||||+++++|+++||+||||||||+|||||||||||.+||+.+|+.|++|+||+|+.+|.+ +|||+.||
T Consensus 92 alGP~kGGlRfhp~v~~~~vk~La~~mt~KnAl~gLP~GGgKGGi~~dPk~~s~~El~r~~r~f~~eL~~--~IGp~~Dv 169 (454)
T PTZ00079 92 ALGPYKGGLRFHPSVNLSILKFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGKSDNEVMRFCQSFMTELYR--HIGPDTDV 169 (454)
T ss_pred CCCCCCCCEEeeCCCCHHHHHHHHHHHHHHHHhcCCCCCCcceeeecCCCCCCHHHHHHHHHHHHHHHHH--hcCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred CCCc----ccccch---hhhcccC--------c---------e----------------------------eec--cCHH
Q psy8846 331 PGAR----AREGNV---TFNLLFH--------Y---------K----------------------------FSS--GPVS 356 (568)
Q Consensus 331 papD----~~~maw---~y~~~~G--------~---------R----------------------------~~~--GnVG 356 (568)
|+|| +++|+| +|+++.| . | .+| ||||
T Consensus 170 pA~DvGt~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg 249 (454)
T PTZ00079 170 PAGDIGVGGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVA 249 (454)
T ss_pred chhhcCCCHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHH
Confidence 9999 999999 8876522 1 1 122 9999
Q ss_pred HHHHHHHHHCCCeEeEeCCC--------CCCHHHH---HHHHHhc-CCcccCC----CCeecCCCCcccccceEEeeccc
Q psy8846 357 MYLPQIWVQEKGKCPGLPTH--------TRKPLAL---EEYKLDN-GTIVGFP----GAVPYEGENLMYEPCDIFVPAAV 420 (568)
Q Consensus 357 ~~~A~~L~~~GakvvaVsD~--------GiD~~~L---~~~~~~~-g~v~~~~----ga~~i~~~~ll~~~cDIliPaAl 420 (568)
+++|++|++.|||||+|||+ |||+++| .++++.+ |+|.+|+ +++.++++++|+++||||+|||+
T Consensus 250 ~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~~~~~~~cDI~iPcA~ 329 (454)
T PTZ00079 250 QYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGKKPWEVPCDIAFPCAT 329 (454)
T ss_pred HHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCCcCcccCCccEEEeccc
Confidence 99999999999999999999 9999988 6677654 7888874 68999999999999999999999
Q ss_pred cCCCChhhHhcc---cceEEEecCCcchHHHHHHHhccCCCcccccCc-------------HHHHhhccCCCcHHHHHHH
Q psy8846 421 EKVITKNNAHKI---QAKIIAEAANESVQESLERRFGNVGGRIPVTPS-------------ESFQKRISGASEKDIVHSG 484 (568)
Q Consensus 421 ~~~It~~na~~i---~AkiIvE~AN~~~~~~l~~~l~~~GggI~vvPd-------------e~~q~~~~~~we~e~V~~~ 484 (568)
+|+||.+||++| +||+|+||||+|+++...+.|.++ ||.|+|| ||.||.++.+|++|+|+++
T Consensus 330 ~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~~L~~~--GI~~~PD~~aNAGGV~vS~~E~~Qn~~~~~W~~eeV~~~ 407 (454)
T PTZ00079 330 QNEINLEDAKLLIKNGCKLVAEGANMPTTIEATHLFKKN--GVIFCPGKAANAGGVAISGLEMSQNAARLQWTAEEVDEK 407 (454)
T ss_pred cccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHC--CcEEEChhhhcCCCeeeehHHhhhhhcccCCCHHHHHHH
Confidence 999999999988 999999999999877777766666 4888888 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCChhhhhhhheee-c-ccCccccee
Q psy8846 485 LDYTMERSARAIMKTAMKYNLGHLDINAHACVTGKP-I-NQGGIHGRI 530 (568)
Q Consensus 485 L~~~M~~a~~~V~~~a~~~~~~~~dlR~AAyi~Ai~-i-~a~~~~G~~ 530 (568)
|+++|.++|+.+++++++|+.+ +|||+|||+.|+. | +||..+||+
T Consensus 408 L~~~M~~~~~~~~~~a~~~~~~-~~~r~~A~i~~~~rva~Am~~~G~~ 454 (454)
T PTZ00079 408 LREIMKSIFEACVKYAEKYGGK-SDLVAGANIAGFLKVADSMIEQGCV 454 (454)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999643 7999999999999 7 999999974
No 6
>PRK14031 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=5.2e-81 Score=669.92 Aligned_cols=342 Identities=24% Similarity=0.319 Sum_probs=310.0
Q ss_pred CCCCHHHHHHHHHhhhhhhccccchhhhhhccchhhhhhhhhhhhhhcCCCCcEEEEEEeEEcCCCcEEEEeeEEEEecC
Q psy8846 171 ENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHST 250 (568)
Q Consensus 171 ~~~~~~~~~~~~~~kAa~ildpk~~~~l~~~~~~~~~r~~~~~I~~~I~~~~rv~~v~~pv~~d~G~~~~~~gyrv~h~~ 250 (568)
.++.|++++...+..-..+++.. .+.....+++.|+.|+|+++|++||.||+|++++|+|||||||+
T Consensus 16 ~~~e~~q~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~gyRvqhn~ 82 (444)
T PRK14031 16 NEPEYHQAVEEVLSTIEEEYNKH-------------PEFDKANLIERLCIPDRVYQFRVTWVDDKGNVQTNMGYRVQHNN 82 (444)
T ss_pred CChHHHHHHHHHHHHHHHHHHhC-------------hhhhhhhHHHHhhcCceEEEEEEEEEECCCCEEEEeeEEEEecC
Confidence 68899999999999988888732 12234678999999999999999999999999999999999999
Q ss_pred CCCCCCCCeeeeCCCCHHHHHHHHHHhhHhhhhcCCCCCCceeEeeCCCCCCCHHHHHHHHHHHHHHHhhcCccccccCC
Q psy8846 251 HRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAV 330 (568)
Q Consensus 251 ~~GP~kGGiR~~p~v~~dev~aLA~~MT~K~Al~~lP~GGaKggI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~di 330 (568)
++||+||||||||+++++|+++||+||||||||+|||||||||||.+||+++|+.||||+||+|+.+|.+ +|||+.||
T Consensus 83 ~lGP~kGGiR~~p~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggi~~dP~~~s~~Eler~~r~f~~~L~~--~iGp~~di 160 (444)
T PRK14031 83 AIGPYKGGIRFHASVNLGILKFLAFEQTFKNSLTTLPMGGGKGGSDFSPRGKSNAEVMRFCQAFMLELWR--HIGPETDV 160 (444)
T ss_pred CCcCCCCCeeecCCCCHHHHHHHHHHHHHHHHHcCCCCCCceeeeeCCCCCCCHHHHHHHHHHHHHHHHh--ccCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred CCCc----ccccch---hhhcccCc-----------------e----------------------------eec--cCHH
Q psy8846 331 PGAR----AREGNV---TFNLLFHY-----------------K----------------------------FSS--GPVS 356 (568)
Q Consensus 331 papD----~~~maw---~y~~~~G~-----------------R----------------------------~~~--GnVG 356 (568)
|+|| +++|+| +|+++.|+ | .+| ||||
T Consensus 161 pApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG 240 (444)
T PRK14031 161 PAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVA 240 (444)
T ss_pred CccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHH
Confidence 9999 999999 88765322 1 122 9999
Q ss_pred HHHHHHHHHCCCeEeEeCCC--------CCCHHHHH---HHHHh-cCCcccCC---CCeecCCCCcccccceEEeecccc
Q psy8846 357 MYLPQIWVQEKGKCPGLPTH--------TRKPLALE---EYKLD-NGTIVGFP---GAVPYEGENLMYEPCDIFVPAAVE 421 (568)
Q Consensus 357 ~~~A~~L~~~GakvvaVsD~--------GiD~~~L~---~~~~~-~g~v~~~~---ga~~i~~~~ll~~~cDIliPaAl~ 421 (568)
+++|++|++.|||||+|||+ |||+++|. +++++ +++|.+|+ +++.++++++|+.+||||+|||++
T Consensus 241 ~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~~d~~~~~~cDIliPaAl~ 320 (444)
T PRK14031 241 QYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVEGARPWGEKGDIALPSATQ 320 (444)
T ss_pred HHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcCCcccccCCCcEEeecccc
Confidence 99999999999999999997 99999986 56655 78898887 788999999999999999999999
Q ss_pred CCCChhhHhcccce---EEEecCCcchHHHHHHHhccCCCcccccCc-------------HHHHhhccCCCcHHHHHHHH
Q psy8846 422 KVITKNNAHKIQAK---IIAEAANESVQESLERRFGNVGGRIPVTPS-------------ESFQKRISGASEKDIVHSGL 485 (568)
Q Consensus 422 ~~It~~na~~i~Ak---iIvE~AN~~~~~~l~~~l~~~GggI~vvPd-------------e~~q~~~~~~we~e~V~~~L 485 (568)
++||++||++|+|+ +|+||||+|+++...+.|.++ ||.++|| ||.||.++.+|++|+|+++|
T Consensus 321 n~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~~L~~r--gI~~~PD~~aNAGGVivs~~E~~qn~~~~~W~~eeV~~~L 398 (444)
T PRK14031 321 NELNGDDARQLVANGVIAVSEGANMPSTPEAIKVFQDA--KILYAPGKAANAGGVSVSGLEMTQNSIKLSWSSEEVDEKL 398 (444)
T ss_pred cccCHHHHHHHHhcCCeEEECCCCCCCCHHHHHHHHHC--CcEEeChhhccCCCeeeehhhhhccccccCCCHHHHHHHH
Confidence 99999999999986 999999999876666665555 4777777 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCChhhhhhhheee-c-ccCccccee
Q psy8846 486 DYTMERSARAIMKTAMKYNLGHLDINAHACVTGKP-I-NQGGIHGRI 530 (568)
Q Consensus 486 ~~~M~~a~~~V~~~a~~~~~~~~dlR~AAyi~Ai~-i-~a~~~~G~~ 530 (568)
+++|.++|+.+++++++++.+ +|||+|||++|+. | +||..+||+
T Consensus 399 ~~~m~~~~~~v~~~~~~~~~~-~~~r~aA~~~a~~rva~a~~~~G~~ 444 (444)
T PRK14031 399 KSIMKNIHEACVQYGTEADGY-VNYVKGANVAGFMKVAKAMMAQGIV 444 (444)
T ss_pred HHHHHHHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999998422 7999999999999 7 999999984
No 7
>KOG2250|consensus
Probab=100.00 E-value=4.9e-71 Score=584.20 Aligned_cols=364 Identities=31% Similarity=0.432 Sum_probs=318.7
Q ss_pred hhhccCCCCCCCCHHHHHHHHHhhhhhhccccchhhhhh--ccchhhhhhhhhhhhhhcCCCCcEEEEEEeEEcCCCcEE
Q psy8846 162 EKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKG--RMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYE 239 (568)
Q Consensus 162 ~t~k~~~T~~~~~~~~~~~~~~~kAa~ildpk~~~~l~~--~~~~~~~r~~~~~I~~~I~~~~rv~~v~~pv~~d~G~~~ 239 (568)
...|.+ ..+|.|+++|..+++.++....+++.|+++. .+...++..+..+|+.+|.||+++++|++||.+|+|+.+
T Consensus 15 ~~~k~~--~~~p~~~~~v~~~~~~~~~~~~~~~~e~v~~~e~~~~fek~~~~~~Il~~l~p~~~~i~~~~p~~~d~G~~~ 92 (514)
T KOG2250|consen 15 NSTKDM--ADSPTFLKMVESMYAPAAIEFQQALAEDVLSLELSSKFEKSPLYTAILFRLDPPERVIKFRVPIPRDDGEFE 92 (514)
T ss_pred hccccc--ccChHHHHHHHhhccccchhhhhhhHHHHhcchhhhhhhhhhHhhhhhhhcCccceeEEEEeceecCCceEE
Confidence 455666 4899999999999999999999988888885 777788888999999999999999999999999999999
Q ss_pred EEeeEEEEecCCCCCCCCCeeeeCCCCHHHHHHHHHHhhHhhhhcCCCCCCceeEeeCCCCCCCHHHHHHHHHHHHHHHh
Q psy8846 240 IITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELA 319 (568)
Q Consensus 240 ~~~gyrv~h~~~~GP~kGGiR~~p~v~~dev~aLA~~MT~K~Al~~lP~GGaKggI~~dP~~~s~~Eler~~r~f~~~L~ 319 (568)
++.|||+||+.+|||+||||||||+|++|++++||+.||||||++|+|||||||||.+||+.+|..|+||+||+|+++|.
T Consensus 93 V~~gfRvqh~~argP~KGGIR~hpsvn~d~~k~La~~~t~K~A~tdiP~GGaKGGi~~dPk~~s~nEi~r~~~~f~~el~ 172 (514)
T KOG2250|consen 93 VINGFRVQHNRARGPAKGGIRYHPSVNLDIVKALAFLMTYKNALTDIPYGGAKGGILIDPKGKSDNEIERITRRFTDELI 172 (514)
T ss_pred EeechhhhhhhccCcccCceEeCCcCCHHHHHHHHHHHHHHhhccCCCCCCCcCccccCccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccccccCCCCCc----ccccch---hhhcccCc-----------------e--------------------------
Q psy8846 320 KKGFIGEFKAVPGAR----AREGNV---TFNLLFHY-----------------K-------------------------- 349 (568)
Q Consensus 320 ~~~~iGp~~dipapD----~~~maw---~y~~~~G~-----------------R-------------------------- 349 (568)
+ +|||+.|+|+|| ++||+| +|.+..|+ |
T Consensus 173 ~--~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~ATG~GV~~y~e~~~~~~~~~~~~k 250 (514)
T KOG2250|consen 173 D--IIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEATGRGVVYYVEAILNDANGKKGIK 250 (514)
T ss_pred H--HcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccccchhHHHHHHHHHHhccCCCCcC
Confidence 9 999999999999 999999 88776543 1
Q ss_pred ---ee-c--cCHHHHHHHHHHHCCCeEeEeCCC--------CCCHHHHHHHHHhcCCcccCCCCeecCCC-------Ccc
Q psy8846 350 ---FS-S--GPVSMYLPQIWVQEKGKCPGLPTH--------TRKPLALEEYKLDNGTIVGFPGAVPYEGE-------NLM 408 (568)
Q Consensus 350 ---~~-~--GnVG~~~A~~L~~~GakvvaVsD~--------GiD~~~L~~~~~~~g~v~~~~ga~~i~~~-------~ll 408 (568)
|. + ||||.|++++|++.|+|+|+|||+ |||+++|.+++++++++.+|++++...+. .+|
T Consensus 251 gkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~l~np~Gid~~eL~~~~~~k~~i~~f~~~~~~~~~~~~~~~~~~~ 330 (514)
T KOG2250|consen 251 GKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGVLINPDGIDIEELLDLADEKKTIKSFDGAKLSYEGYIAGLPPWTL 330 (514)
T ss_pred ceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCceeEECCCCCCHHHHHHHHHhhccccccccccccCccccccCcchhh
Confidence 11 1 999999999999999999999999 99999999999999999999998876554 788
Q ss_pred cccceEEeeccccCCCChhhHhcccce---EEEecCCcchHHHHHHHhccCCCcccccCc-------------HHHHhhc
Q psy8846 409 YEPCDIFVPAAVEKVITKNNAHKIQAK---IIAEAANESVQESLERRFGNVGGRIPVTPS-------------ESFQKRI 472 (568)
Q Consensus 409 ~~~cDIliPaAl~~~It~~na~~i~Ak---iIvE~AN~~~~~~l~~~l~~~GggI~vvPd-------------e~~q~~~ 472 (568)
..+||||+|||.+|+||.+||..|+|+ +||||||.|.++.+.+.|.++ ||.++|| ||.||.+
T Consensus 331 v~~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ptTpeA~~vlek~--gv~i~Pd~~aNaGGVtvS~~E~l~nl~ 408 (514)
T KOG2250|consen 331 VEKCDILVPCATQNEITGENAKALVAKGCKYIVEGANMPTTPEADEVLEKA--GVLIIPDIYANAGGVTVSYFEWLQNLN 408 (514)
T ss_pred HhhCcEEeecCccCcccHhhHHHHHhcCCcEEEecCCCCCChhHHHHHHhC--CeEEechhhccCCCeeeeHHHHHHhcc
Confidence 999999999999999999999999877 999999999877666666655 4777777 8889887
Q ss_pred -------cCCCcHHHHHHHHHHHHHHHHHHH----HHHHHhcc-----CCCCChhhhhhhheee-c-ccCcccceee
Q psy8846 473 -------SGASEKDIVHSGLDYTMERSARAI----MKTAMKYN-----LGHLDINAHACVTGKP-I-NQGGIHGRIS 531 (568)
Q Consensus 473 -------~~~we~e~V~~~L~~~M~~a~~~V----~~~a~~~~-----~~~~dlR~AAyi~Ai~-i-~a~~~~G~~~ 531 (568)
...|+.|.|.+.|.+.|+..++.. ++.+++++ ....|++..|.+.++. + +++...|++-
T Consensus 409 ~~s~g~~~~~~~~e~v~~~L~~v~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~gal~~~~~kva~ai~~~g~~~ 485 (514)
T KOG2250|consen 409 HVSYGKLTFKWTEEKVDSLLASVQENLSRKQGKANLEPAAEFKDRIQGTSEKDLVHGALIATFNKVARAITDQGDVW 485 (514)
T ss_pred cccccceeEEeehhhHHHHHHHHHHHHHHhccCcccchHHHhhhhhcCCCchHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 456999999999999888887776 54443322 0024666666666666 5 6666665553
No 8
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=100.00 E-value=2e-49 Score=452.53 Aligned_cols=297 Identities=16% Similarity=0.149 Sum_probs=260.6
Q ss_pred hhhhhhhhhhhhhhcCCCCcEEEEEEeEEcCCCcEEEEeeEEEEecCCCCCCCCCeeeeCC-----------CCHHHHHH
Q psy8846 204 IEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDD-----------VSRDEVKA 272 (568)
Q Consensus 204 ~~~~r~~~~~I~~~I~~~~rv~~v~~pv~~d~G~~~~~~gyrv~h~~~~GP~kGGiR~~p~-----------v~~dev~a 272 (568)
.-+.=++++++++.+..|++.+.+.||+ | ..|+|||++|+.. ++|||||||. ++.||+.+
T Consensus 455 ~alsFrldp~~l~~l~~P~~p~~v~fv~----G--~~f~G~hvR~~di---ARGGiR~~~s~~~edy~tn~~~~~dEv~~ 525 (1002)
T PTZ00324 455 TALAFRLDPSFLSELEYPRVPYGVFLVA----G--AQFRGFHIRFTDI---ARGGVRMIQSFKEQAYRRNKRSVFDENYN 525 (1002)
T ss_pred ceEEEeCCHHHHhhcCCCCceEEEEEEE----C--CcEEEEEEecCCc---ccceeEEecCcchhhhhhcccCcHHHHHH
Confidence 3344557788899999999999999998 4 6899999999998 9999999998 88999999
Q ss_pred HHHHhhHhhhhcCCCCCCceeEeeCCCCCCCH---HHHHHHHHHHHHHHhhcCccccccCC-----------CCCc----
Q psy8846 273 LSALMTFKCACVDVPFGGAKAGIKINPKNYSE---NELEKITRRFTLELAKKGFIGEFKAV-----------PGAR---- 334 (568)
Q Consensus 273 LA~~MT~K~Al~~lP~GGaKggI~~dP~~~s~---~Eler~~r~f~~~L~~~~~iGp~~di-----------papD---- 334 (568)
||.||||||| +||+|||||||.+||+.++. .|+++++|+|+++|.+ ++||+.|| |+||
T Consensus 526 LA~tqt~KNa--dIP~GGaKGgi~vdp~~~~~~~~~e~er~~r~yi~aLlD--li~p~~dIVd~~~~de~l~~aPD~ntt 601 (1002)
T PTZ00324 526 LASTQLLKNK--DIPEGGSKGTILLSSRYLNKFAQVRCQHAFLQYIDALLD--VMLPGEKVVDHLKQEEIIFLGPDEHTT 601 (1002)
T ss_pred HHHHHHHhcC--CCCCCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHH--hcCCCcccccccCCccccccCCCCCCC
Confidence 9999999998 99999999999999998887 8999999999999998 89999999 9999
Q ss_pred ccccch--hhhcccCc-------------------e-----------------------------eec----cCHHHHHH
Q psy8846 335 AREGNV--TFNLLFHY-------------------K-----------------------------FSS----GPVSMYLP 360 (568)
Q Consensus 335 ~~~maw--~y~~~~G~-------------------R-----------------------------~~~----GnVG~~~A 360 (568)
++.|+| +|++..|+ | .++ |+||++.+
T Consensus 602 a~~mdwa~~~s~~rG~~~~~af~TGKp~~lGG~~hk~yG~T~rGv~~~v~~~~~~lgid~~~~Tv~~~Ggp~GDVGgN~~ 681 (1002)
T PTZ00324 602 GTLMDWAALHAKKRGYPFWKSFTTGKSPSMGGIPHDTYGMTTRSVRAYVTGILEKLGLNEEEVTKFQTGGPDGDLGSNEL 681 (1002)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEeCCCcccCCcCCCcCcccchhHHHHHHHHHHHcCCCccCCEEEEECCCCchHHHHHH
Confidence 899999 77654432 0 111 99999999
Q ss_pred HHHHHCCCeEeEeCCC--------CCCHHHHHHHHHhcCCcccC---------------------CCCeec-----CCCC
Q psy8846 361 QIWVQEKGKCPGLPTH--------TRKPLALEEYKLDNGTIVGF---------------------PGAVPY-----EGEN 406 (568)
Q Consensus 361 ~~L~~~GakvvaVsD~--------GiD~~~L~~~~~~~g~v~~~---------------------~ga~~i-----~~~~ 406 (568)
+++. +|+|||+|+ |+|+++|.+++++++++.+| |+++.+ .+++
T Consensus 682 lls~---~klVAv~D~~G~~~DP~GLd~~EL~rl~~~~~s~~~yd~~~lS~gG~~~~r~~k~i~l~~~~~i~~g~~~~~~ 758 (1002)
T PTZ00324 682 LLSK---EKTVGIVDGSGVLHDPEGLNREELRRLAHHRLPAREFDESKLSPQGFLVLTDDRDVKLPDGTIVESGLRFRNE 758 (1002)
T ss_pred HHhC---CEEEEEEcCCCEEECCCCCCHHHHHHHHHcCCCcccCchhhccCCCceeecccccccCCccceeccccccchh
Confidence 9875 799999999 99999999999999988854 333333 2344
Q ss_pred c---ccccceEEeeccc-cCCCChhhH--------hcccceEEEecCCcchHHHHHHHhccCCCcccccCc---------
Q psy8846 407 L---MYEPCDIFVPAAV-EKVITKNNA--------HKIQAKIIAEAANESVQESLERRFGNVGGRIPVTPS--------- 465 (568)
Q Consensus 407 l---l~~~cDIliPaAl-~~~It~~na--------~~i~AkiIvE~AN~~~~~~l~~~l~~~GggI~vvPd--------- 465 (568)
+ +..+||||+|||. +++||++|+ .+++||+|+||||.|+++..+..|.++ ||.|+||
T Consensus 759 ~~l~~~~~vDlliPaggr~~~I~~~Na~~~~~~~~~~irakvIvEGANlpiT~eAr~~L~~~--Gv~IipD~laNsGGV~ 836 (1002)
T PTZ00324 759 FHLLPYSDADVFVPCGGRPRSVTLFNVGRFFDEKNGKLRFKIIVEGANLFITQDARLALEEC--GVILFKDASANKGGVT 836 (1002)
T ss_pred hccccCCCccEEEECCCCcCccCHHHHhhhhhccccCceeEEEEECCCCCCCHHHHHHHHHC--CCEEcCcchhcCCCcE
Confidence 4 5899999999998 999999999 789999999999999988777777777 4777888
Q ss_pred ----HHHHhhc------------------cCCCc--HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhhhhheeec
Q psy8846 466 ----ESFQKRI------------------SGASE--KDIVHSGLDYTMERSARAIMKTAMKYNLGHLDINAHACVTGKPI 521 (568)
Q Consensus 466 ----e~~q~~~------------------~~~we--~e~V~~~L~~~M~~a~~~V~~~a~~~~~~~~dlR~AAyi~Ai~i 521 (568)
||+|+++ ..+|+ .++|.++|++.|..+|+.||+.+++.+ +++|+||-.++..|
T Consensus 837 ~S~~Evl~~l~l~d~ef~~~m~~~~~~~~~~f~~~yv~eV~~~L~~~a~~ef~~i~~~~~~~~---~~~r~asd~lS~~I 913 (1002)
T PTZ00324 837 SSSLEVLAALALSDEEFAEHMCVKDATDAPEFYKKYVKEILDRIEENARLEFNAIWREELRTG---KPRCLLADVLSRKI 913 (1002)
T ss_pred eeHHHHHhccccchhhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CCHHHHHHHHHHHH
Confidence 8889887 67899 999999999999999999999998887 89999999999886
No 9
>PF02812 ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; InterPro: IPR006097 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the dimerisation region of these enzymes.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2BMA_C 1C1D_B 1BXG_A 1BW9_B 1C1X_A 2YFQ_B 3R3J_D 1V9L_C 1B26_C 2TMG_B ....
Probab=100.00 E-value=9.7e-40 Score=299.87 Aligned_cols=123 Identities=45% Similarity=0.744 Sum_probs=115.8
Q ss_pred CCcEEEEEEeEEcCCCcEEEEeeEEEEecCCCCCCCCCeeeeCCCCHHHHHHHHHHhhHhhhhcCCCCCCceeEeeCCCC
Q psy8846 221 CDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAKAGIKINPK 300 (568)
Q Consensus 221 ~~rv~~v~~pv~~d~G~~~~~~gyrv~h~~~~GP~kGGiR~~p~v~~dev~aLA~~MT~K~Al~~lP~GGaKggI~~dP~ 300 (568)
|++++++++||.+|+|....++|||||||+++||+||||||||++|.+|+++||++||||||+++||||||||||.+||+
T Consensus 1 pe~v~~~~~~~~~d~g~~~~~~g~~v~h~~~~GPa~GGiR~~~~~s~~ev~~LA~~MT~K~Al~~lp~GGaKggI~~dp~ 80 (131)
T PF02812_consen 1 PERVIQVRVPVVMDDGPITGLRGYRVQHSTARGPAKGGIRMHPYVSEEEVLRLARGMTYKCALAGLPFGGAKGGIKIDPK 80 (131)
T ss_dssp -SEEEEEEEEEEETTSCEEEEEEEEEEEE-SSSSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTTSS-EEEEEEEESSGG
T ss_pred CCEEEEEEEEEEeCCCCEEEEEEEEEEEcCCCCCCCCCeEEecCCCHHHHHHHHHHHHhhhhhccCCCCceeEEeecCcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCccccccCCCCCc----ccccch---hhhcc
Q psy8846 301 NYSENELEKITRRFTLELAKKGFIGEFKAVPGAR----AREGNV---TFNLL 345 (568)
Q Consensus 301 ~~s~~Eler~~r~f~~~L~~~~~iGp~~dipapD----~~~maw---~y~~~ 345 (568)
++|..|+++++|+|+++|.+ ++|++.|||+|| +++|+| +|+.+
T Consensus 81 ~~s~~e~e~l~r~f~~~l~~--~i~~~~~i~a~Dvgt~~~dm~~i~~~~~~~ 130 (131)
T PF02812_consen 81 DLSDNERERLTRRFGRALSP--FIGPGRDIPAPDVGTGERDMAWIADEYRRV 130 (131)
T ss_dssp GS-HHHHHHHHHHHHHHHGG--GSBTTTEEEEBBTTBSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHH--HhccCcEEECCcCCCCHHHHHHHHHhchhc
Confidence 99999999999999999998 999999999999 999999 77643
No 10
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=100.00 E-value=2.5e-39 Score=326.60 Aligned_cols=174 Identities=23% Similarity=0.234 Sum_probs=159.1
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCC--------CCCHHHH---HHHHHhcCC-cccC----CCCeecCCCCcccccceEEe
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTH--------TRKPLAL---EEYKLDNGT-IVGF----PGAVPYEGENLMYEPCDIFV 416 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~--------GiD~~~L---~~~~~~~g~-v~~~----~ga~~i~~~~ll~~~cDIli 416 (568)
||||+++|++|++.|+|||+|||+ |||+++| .++++++++ |.+| ++++.++++++|+++||||+
T Consensus 47 GnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~~DIli 126 (254)
T cd05313 47 GNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPWEVPCDIAF 126 (254)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchhcCCCcEEE
Confidence 999999999999999999999998 9999988 556777776 5555 47899999999999999999
Q ss_pred eccccCCCChhhHhcc---cceEEEecCCcchHHHHHHHhccCCCcccccCc-------------HHHHhhccCCCcHHH
Q psy8846 417 PAAVEKVITKNNAHKI---QAKIIAEAANESVQESLERRFGNVGGRIPVTPS-------------ESFQKRISGASEKDI 480 (568)
Q Consensus 417 PaAl~~~It~~na~~i---~AkiIvE~AN~~~~~~l~~~l~~~GggI~vvPd-------------e~~q~~~~~~we~e~ 480 (568)
|||++++||++||++| +||+|+||||+|+++...+.|.++ ||.|+|| ||.||.++.+|++|+
T Consensus 127 PcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~~a~~~L~~r--GI~vvPD~laNaGGVivs~~E~~qn~~~~~w~~e~ 204 (254)
T cd05313 127 PCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEAIEVFRQA--GVLFAPGKAANAGGVAVSGLEMSQNSQRLSWTAEE 204 (254)
T ss_pred eccccccCCHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHC--CcEEECchhhcCCCeeeeHHHhhcccccccCCHHH
Confidence 9999999999999999 899999999999877777777776 5888888 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhhhhheee-c-ccCcccce
Q psy8846 481 VHSGLDYTMERSARAIMKTAMKYNLGHLDINAHACVTGKP-I-NQGGIHGR 529 (568)
Q Consensus 481 V~~~L~~~M~~a~~~V~~~a~~~~~~~~dlR~AAyi~Ai~-i-~a~~~~G~ 529 (568)
|+++|+++|.++|++|++++++++.+ +|||+|||++|+. | ++|..||+
T Consensus 205 V~~~l~~~m~~~~~~v~~~a~~~~~~-~~lr~aA~~~a~~rv~~a~~~rG~ 254 (254)
T cd05313 205 VDAKLKDIMKNIHDACAETAKKYGDP-PDLVAGANIAGFLKVADAMLAQGV 254 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999843 6999999999999 7 99999984
No 11
>KOG2250|consensus
Probab=100.00 E-value=2.1e-37 Score=328.70 Aligned_cols=429 Identities=22% Similarity=0.290 Sum_probs=301.3
Q ss_pred ccccCCccccCCCCCCCCCHHHHHHHHHHHHHHHhhhhchHHHhh--hhhhhhhhhhHHhhhccCCCcCeEEEEEEeEEe
Q psy8846 45 NLHDIPEKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKG--RMTIEDKKKKVRGILLGMQPCDHIIEISFPVRR 122 (568)
Q Consensus 45 ~~~~~~~~~~~~~~~~~p~f~~~v~~~~~~aa~~l~~~l~~~~~~--~~~~~~~~~~v~~iL~~i~~p~rvl~vsfPvr~ 122 (568)
..|++++..+++ +++|+|++||+.++..++...++++.|++.. .++..||.+.+..||.+|.||+|+++|+|||++
T Consensus 9 ~~~~~~~~~k~~--~~~p~~~~~v~~~~~~~~~~~~~~~~e~v~~~e~~~~fek~~~~~~Il~~l~p~~~~i~~~~p~~~ 86 (514)
T KOG2250|consen 9 AAHQYHNSTKDM--ADSPTFLKMVESMYAPAAIEFQQALAEDVLSLELSSKFEKSPLYTAILFRLDPPERVIKFRVPIPR 86 (514)
T ss_pred HHHHhhhccccc--ccChHHHHHHHhhccccchhhhhhhHHHHhcchhhhhhhhhhHhhhhhhhcCccceeEEEEeceec
Confidence 356677777888 8999999999999999999999999999985 888999999999999999999999999999999
Q ss_pred cCCceEEEeeeeeeecCCCCCCCCCceeccccCCccc--ch--hhhccCCCCCCCCHHHHHHHHHhhhhhhccccchhhh
Q psy8846 123 DSGDYEIITGYRAQHSTHRTPCKGATAVQSQQRNLHD--IP--EKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDI 198 (568)
Q Consensus 123 DdG~~ev~~GYRvQHs~~rgP~KGGIR~~~~~~~~~~--l~--~t~k~~~T~~~~~~~~~~~~~~~kAa~ildpk~~~~l 198 (568)
|||+++|++|||+||++|||||||||||||+|+++++ ++ |||||++ .+.| ++++||+..+||| ..
T Consensus 87 d~G~~~V~~gfRvqh~~argP~KGGIR~hpsvn~d~~k~La~~~t~K~A~--tdiP------~GGaKGGi~~dPk---~~ 155 (514)
T KOG2250|consen 87 DDGEFEVINGFRVQHNRARGPAKGGIRYHPSVNLDIVKALAFLMTYKNAL--TDIP------YGGAKGGILIDPK---GK 155 (514)
T ss_pred CCceEEEeechhhhhhhccCcccCceEeCCcCCHHHHHHHHHHHHHHhhc--cCCC------CCCCcCccccCcc---cc
Confidence 9999999999999999999999999999999999999 55 9999999 5888 8999999999998 89
Q ss_pred hhccchhhhhhhhhhhhhhcCCCCcEEEEEEe-EEcCCCcEE---EEeeEEEEecCC------CCCCCCCeeeeCCCCHH
Q psy8846 199 KGRMTIEDKKKKVRGILLGMQPCDHIIEISFP-VRRDSGDYE---IITGYRAQHSTH------RTPCKGGIRFSDDVSRD 268 (568)
Q Consensus 199 ~~~~~~~~~r~~~~~I~~~I~~~~rv~~v~~p-v~~d~G~~~---~~~gyrv~h~~~------~GP~kGGiR~~p~v~~d 268 (568)
+.+|+++.+|+|+.+++++|+|..++ ..| +. .|..+ .|.-|+-.|+.. .+|..||+-..+..|--
T Consensus 156 s~nEi~r~~~~f~~el~~~iGp~~Dv---Papdig--~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~ATG~ 230 (514)
T KOG2250|consen 156 SDNEIERITRRFTDELIDIIGPDTDV---PAPDIG--TGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEATGR 230 (514)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCCCC---Cccccc--cCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccccch
Confidence 99999999999999999999999994 555 22 33332 344455555443 56899999777766632
Q ss_pred HHH----HHHHHhhHhhhhcCCC-----CC-------------Cce-------eEeeCCCCCCCHHHHHHHHHHHHHHHh
Q psy8846 269 EVK----ALSALMTFKCACVDVP-----FG-------------GAK-------AGIKINPKNYSENELEKITRRFTLELA 319 (568)
Q Consensus 269 ev~----aLA~~MT~K~Al~~lP-----~G-------------GaK-------ggI~~dP~~~s~~Eler~~r~f~~~L~ 319 (568)
-|. ++=.-+++|..+.+.- || |+| -|+.+||..++..||.++... .
T Consensus 231 GV~~y~e~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~l~np~Gid~~eL~~~~~~-----k 305 (514)
T KOG2250|consen 231 GVVYYVEAILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGVLINPDGIDIEELLDLADE-----K 305 (514)
T ss_pred hHHHHHHHHHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCceeEECCCCCCHHHHHHHHHh-----h
Confidence 222 2333333333333321 22 333 245679999999999876432 1
Q ss_pred hcCccccccCCCCCc---cccc-----chhhh---cccCceeeccCHHHHHHHHHHHCCCeEeEeCCC-CCCHHHHHHHH
Q psy8846 320 KKGFIGEFKAVPGAR---AREG-----NVTFN---LLFHYKFSSGPVSMYLPQIWVQEKGKCPGLPTH-TRKPLALEEYK 387 (568)
Q Consensus 320 ~~~~iGp~~dipapD---~~~m-----aw~y~---~~~G~R~~~GnVG~~~A~~L~~~GakvvaVsD~-GiD~~~L~~~~ 387 (568)
+ .+ .+.|..+ +. | .|... .+.=.-..++.|-..=|..|...|+|.|+=.-- +.++++
T Consensus 306 ~-~i----~~f~~~~~~~~~-~~~~~~~~~~v~~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ptTpeA----- 374 (514)
T KOG2250|consen 306 K-TI----KSFDGAKLSYEG-YIAGLPPWTLVEKCDILVPCATQNEITGENAKALVAKGCKYIVEGANMPTTPEA----- 374 (514)
T ss_pred c-cc----cccccccccCcc-ccccCcchhhHhhCcEEeecCccCcccHhhHHHHHhcCCcEEEecCCCCCChhH-----
Confidence 1 11 1222222 10 0 12110 000000012566677778888889888871100 333322
Q ss_pred HhcCCcccCCCCeecCCCCcccccceEEeeccccC--CCC---hhhHhccc--------ceEEEecCCcchHHHHHHHhc
Q psy8846 388 LDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEK--VIT---KNNAHKIQ--------AKIIAEAANESVQESLERRFG 454 (568)
Q Consensus 388 ~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~--~It---~~na~~i~--------AkiIvE~AN~~~~~~l~~~l~ 454 (568)
+++|+..-=+++|.+--| =+| -|-+.+++ -++=.|.-+.-+..+.+.+..
T Consensus 375 -----------------~~vlek~gv~i~Pd~~aNaGGVtvS~~E~l~nl~~~s~g~~~~~~~~e~v~~~L~~v~e~~~~ 437 (514)
T KOG2250|consen 375 -----------------DEVLEKAGVLIIPDIYANAGGVTVSYFEWLQNLNHVSYGKLTFKWTEEKVDSLLASVQENLSR 437 (514)
T ss_pred -----------------HHHHHhCCeEEechhhccCCCeeeeHHHHHHhcccccccceeEEeehhhHHHHHHHHHHHHHH
Confidence 234444444555544322 112 12233333 344444433334444443333
Q ss_pred cCCCcccccCcHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhhhhheee-c-ccCccc
Q psy8846 455 NVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMKYNLGHLDINAHACVTGKP-I-NQGGIH 527 (568)
Q Consensus 455 ~~GggI~vvPde~~q~~~~~~we~e~V~~~L~~~M~~a~~~V~~~a~~~~~~~~dlR~AAyi~Ai~-i-~a~~~~ 527 (568)
..| .+.+-|.-.|+.++.+..+.+.|+..|...|.+.-+.+.+....++. +|||+|||+.++. | .+....
T Consensus 438 ~~~-~~~l~~~~~~~~~~~~~~~~~lv~gal~~~~~kva~ai~~~g~~~~~--ldlR~a~~~~~~ekiy~~~~~s 509 (514)
T KOG2250|consen 438 KQG-KANLEPAAEFKDRIQGTSEKDLVHGALIATFNKVARAITDQGDVWNL--LDLRTAAYVNAIEKIYLVYNES 509 (514)
T ss_pred hcc-CcccchHHHhhhhhcCCCchHHhhhhHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHhh
Confidence 333 35566777788889999999999999999999999999999999984 8999999998887 5 443333
No 12
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=100.00 E-value=1.7e-35 Score=298.15 Aligned_cols=171 Identities=22% Similarity=0.314 Sum_probs=158.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCC--------CCCHHHHHHHHHhcCC-cccCC-----CCeecCCC-CcccccceEEee
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTH--------TRKPLALEEYKLDNGT-IVGFP-----GAVPYEGE-NLMYEPCDIFVP 417 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~--------GiD~~~L~~~~~~~g~-v~~~~-----ga~~i~~~-~ll~~~cDIliP 417 (568)
||||+++|++|++.|++||+|||+ |||+++|.++++++|+ |..|+ +++.++++ ++|+++||||+|
T Consensus 41 G~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP 120 (244)
T PF00208_consen 41 GNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIP 120 (244)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEE
T ss_pred CHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEE
Confidence 999999999999999999999998 9999999999999998 99998 68889884 999999999999
Q ss_pred ccccCCCChhhHh-ccc--ceEEEecCCcchHHHHHHHhccCCCcccccCc-------------HHHHhhccCCCcHHHH
Q psy8846 418 AAVEKVITKNNAH-KIQ--AKIIAEAANESVQESLERRFGNVGGRIPVTPS-------------ESFQKRISGASEKDIV 481 (568)
Q Consensus 418 aAl~~~It~~na~-~i~--AkiIvE~AN~~~~~~l~~~l~~~GggI~vvPd-------------e~~q~~~~~~we~e~V 481 (568)
||++++||++|++ .|+ ||+||||||+|+++...+.|.++ ||.|+|| ||.|+++..+|++|+|
T Consensus 121 ~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~~L~~r--GI~viPD~~aNaGGvi~s~~E~~~~~~~~~~~~~~v 198 (244)
T PF00208_consen 121 CALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADEILRER--GILVIPDFLANAGGVIVSYFEWLQNLQGLFWTEEEV 198 (244)
T ss_dssp ESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHHHHHHT--T-EEE-HHHHTTHHHHHHHHHHHHHHHTSSTTHHHH
T ss_pred cCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHHHHHHC--CCEEEcchhhcCCCeEeehhhhcchhhhhhhhHHHH
Confidence 9999999999999 999 99999999999877666677777 5999999 8889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCChhhhhhhheee-c-ccCcccc
Q psy8846 482 HSGLDYTMERSARAIMKTAMKYNLGHLDINAHACVTGKP-I-NQGGIHG 528 (568)
Q Consensus 482 ~~~L~~~M~~a~~~V~~~a~~~~~~~~dlR~AAyi~Ai~-i-~a~~~~G 528 (568)
.++|+++|.+++++|++.|++++ +++|+|||++|+. | ++|..||
T Consensus 199 ~~~l~~~m~~~~~~v~~~a~~~~---~~~~~aA~~~A~~rv~~a~~~rG 244 (244)
T PF00208_consen 199 FEKLEEIMDRAFKRVLERAEEEG---ISLRQAAYILAFERVAAAMKLRG 244 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---SSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999 7999999999999 7 8988887
No 13
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=100.00 E-value=5.5e-34 Score=282.56 Aligned_cols=163 Identities=24% Similarity=0.273 Sum_probs=154.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCC-------CCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccccCCCC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTH-------TRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVIT 425 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~-------GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~~It 425 (568)
||||+++|++|++.|+++|+|||+ |||++++.+++.+.+++..|+.++.++++++|+.+||||+|||++|+||
T Consensus 32 GnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~~~~i~ 111 (217)
T cd05211 32 GNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCALGNVID 111 (217)
T ss_pred CHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccEEeeccccCccC
Confidence 999999999999999999999999 8999999999999999999988888899999999999999999999999
Q ss_pred hhhHhcccceEEEecCCcchHHHHHHHhccCCCcccccCc-------------HHHHhhccCCCcHHHHHHHHHHHHHHH
Q psy8846 426 KNNAHKIQAKIIAEAANESVQESLERRFGNVGGRIPVTPS-------------ESFQKRISGASEKDIVHSGLDYTMERS 492 (568)
Q Consensus 426 ~~na~~i~AkiIvE~AN~~~~~~l~~~l~~~GggI~vvPd-------------e~~q~~~~~~we~e~V~~~L~~~M~~a 492 (568)
.+|+.+++||+|+|+||+|+++...+.|.++ ||+|+|| ||.|+.++.+|++|+|.++|++.|.++
T Consensus 112 ~~~a~~l~a~~V~e~AN~p~t~~a~~~L~~~--Gi~v~Pd~~~NaGGvi~s~~E~~q~~~~~~w~~~~v~~~l~~~m~~~ 189 (217)
T cd05211 112 LENAKKLKAKVVAEGANNPTTDEALRILHER--GIVVAPDIVANAGGVIVSYFEWVQNLQRLSWDAEEVRSKLEQVMTDI 189 (217)
T ss_pred hhhHhhcCccEEEeCCCCCCCHHHHHHHHHC--CcEEEChHHhcCCCeEeEHHHhcCCccccCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999877777777777 5889999 888999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCChhhhhhhheee
Q psy8846 493 ARAIMKTAMKYNLGHLDINAHACVTGKP 520 (568)
Q Consensus 493 ~~~V~~~a~~~~~~~~dlR~AAyi~Ai~ 520 (568)
+++|++.+++++ +|+|+|||+.|+.
T Consensus 190 ~~~v~~~a~~~~---~~~r~aA~~~a~~ 214 (217)
T cd05211 190 HNGVFAISERDG---VTMRAAANILAFE 214 (217)
T ss_pred HHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 999999999998 8999999999875
No 14
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=100.00 E-value=1.6e-32 Score=273.92 Aligned_cols=163 Identities=31% Similarity=0.428 Sum_probs=155.4
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCC--------CCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccccCCC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTH--------TRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVI 424 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~--------GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~~I 424 (568)
||||+++|++|.+.|++||+|+|+ |||+++|.++++++|++.+|++++.++++++++.+||||+|||++++|
T Consensus 40 G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~~Dvlip~a~~~~i 119 (227)
T cd01076 40 GNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELDCDILIPAALENQI 119 (227)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeecccEEEecCccCcc
Confidence 999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred ChhhHhcccceEEEecCCcchHHHHHHHhccCCCcccccCc-------------HHHHhhccCCCcHHHHHHHHHHHHHH
Q psy8846 425 TKNNAHKIQAKIIAEAANESVQESLERRFGNVGGRIPVTPS-------------ESFQKRISGASEKDIVHSGLDYTMER 491 (568)
Q Consensus 425 t~~na~~i~AkiIvE~AN~~~~~~l~~~l~~~GggI~vvPd-------------e~~q~~~~~~we~e~V~~~L~~~M~~ 491 (568)
|++|+++++||+|+||||+|+++...+.|.++ ||+|+|| ||.|+.+...|++++|.++|++.|.+
T Consensus 120 ~~~~~~~l~a~~I~egAN~~~t~~a~~~L~~r--Gi~~~PD~~aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~i~~ 197 (227)
T cd01076 120 TADNADRIKAKIIVEAANGPTTPEADEILHER--GVLVVPDILANAGGVTVSYFEWVQNLQGFYWDEEEVNSRLETKMRE 197 (227)
T ss_pred CHHHHhhceeeEEEeCCCCCCCHHHHHHHHHC--CCEEEChHHhcCcchhhhHHHHhhhhccCcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999987777777777 5999999 88888888899999999999999999
Q ss_pred HHHHHHHHHHhccCCCCChhhhhhhheee
Q psy8846 492 SARAIMKTAMKYNLGHLDINAHACVTGKP 520 (568)
Q Consensus 492 a~~~V~~~a~~~~~~~~dlR~AAyi~Ai~ 520 (568)
++.++++.+++++ +++|+|||++|+.
T Consensus 198 ~~~~v~~~a~~~~---~~~~~aA~~~a~~ 223 (227)
T cd01076 198 AFEAVLETAEKYG---VDLRTAAYVLALE 223 (227)
T ss_pred HHHHHHHHHHHhC---cCHHHHHHHHHHH
Confidence 9999999999998 7999999999876
No 15
>PRK14030 glutamate dehydrogenase; Provisional
Probab=99.97 E-value=9e-31 Score=281.86 Aligned_cols=185 Identities=12% Similarity=0.085 Sum_probs=148.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhchHHHhhhhhhhhhhhhHHhhhccCCCcCeEEEEEEeEEecCCceEEEeeeeeeec
Q psy8846 59 AENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHS 138 (568)
Q Consensus 59 ~~~p~f~~~v~~~~~~aa~~l~~~l~~~~~~~~~~~~~~~~v~~iL~~i~~p~rvl~vsfPvr~DdG~~ev~~GYRvQHs 138 (568)
..+|+||+++..+|++++++++ +.++ .++..+. ++|+.|+|+++|+|||+||||++++|+|||||||
T Consensus 15 ~~e~eF~~~~~~~~~~~~~~l~--~~~~--------y~~~~~~---~~l~~p~r~i~~~vp~~~d~G~~~~~~GyRvqhn 81 (445)
T PRK14030 15 PGESEYLQAVKEVLLSVEDVYN--QHPE--------FEKAKII---ERIVEPDRIFTFRVPWVDDKGEVQVNLGYRVQFN 81 (445)
T ss_pred cCChHHHHHHHHHHHHHHHHHc--cChh--------hhhhHHH---HHhhcCcEEEEEEEEEEECCCcEEEEeeEEEEec
Confidence 4689999999999999999998 3322 1122344 4449999999999999999999999999999999
Q ss_pred CCCCCCCCCceeccccCCccc--ch--hhhccCCCCCCCCHHHHHHHHHhhhhhhccccchhhhhhccchhhhhhhhhhh
Q psy8846 139 THRTPCKGATAVQSQQRNLHD--IP--EKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGI 214 (568)
Q Consensus 139 ~~rgP~KGGIR~~~~~~~~~~--l~--~t~k~~~T~~~~~~~~~~~~~~~kAa~ildpk~~~~l~~~~~~~~~r~~~~~I 214 (568)
+++||+||||||||.++.+++ |+ |||||++ .++| +++.||+..+||+ ++|.+|+++++|+|+++|
T Consensus 82 ~~lGP~kGGiR~~p~v~~~~v~aLa~~MT~K~Al--~~lP------~GGgKggI~~dP~---~~s~~Eler~~r~f~~~L 150 (445)
T PRK14030 82 NAIGPYKGGIRFHPSVNLSILKFLGFEQTFKNAL--TTLP------MGGGKGGSDFSPR---GKSDAEIMRFCQAFMLEL 150 (445)
T ss_pred CcccCCCCcEEecCCCCHHHHHHHHHHHHHHHHh--cCCC------CCCceeeecCCCc---cCCHHHHHHHHHHHHHHH
Confidence 999999999999999999998 55 9999999 7889 8999999999998 789999999999999999
Q ss_pred hhhcCCCCcEEEEEEe-EEcC-------CCcEEEEeeEEEEecCCCCCCCCCeeeeCCCCHHHH
Q psy8846 215 LLGMQPCDHIIEISFP-VRRD-------SGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEV 270 (568)
Q Consensus 215 ~~~I~~~~rv~~v~~p-v~~d-------~G~~~~~~gyrv~h~~~~GP~kGGiR~~p~v~~dev 270 (568)
.++|+|..++ ..| |..+ -|++..+.|+..-+-+-.+...||..-.+..|---|
T Consensus 151 ~~~iGp~~DI---pApDvgt~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv 211 (445)
T PRK14030 151 WRHIGPDTDV---PAGDIGVGGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGA 211 (445)
T ss_pred HHhcCCCCCc---cccccCCCHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHH
Confidence 9999999988 555 3322 133344444332222223335688888777775333
No 16
>PRK09414 glutamate dehydrogenase; Provisional
Probab=99.96 E-value=1.2e-29 Score=273.86 Aligned_cols=180 Identities=12% Similarity=0.117 Sum_probs=144.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhchHHHhhhhhhhhhhhhHHhhhccCCCcCeEEEEEEeEEecCCceEEEeeeeeeec
Q psy8846 59 AENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHS 138 (568)
Q Consensus 59 ~~~p~f~~~v~~~~~~aa~~l~~~l~~~~~~~~~~~~~~~~v~~iL~~i~~p~rvl~vsfPvr~DdG~~ev~~GYRvQHs 138 (568)
..+|+||+++..+|++|+++++ +.++ .+...+..+ ++.|+|+|+|+|||+||||++++|+|||||||
T Consensus 19 ~~~~~~~~~~~~~~~~a~~~l~--~~~~--------~~~~~~~~~---l~~p~r~i~v~~pv~~d~g~~~~~~gyRv~h~ 85 (445)
T PRK09414 19 PGQPEFHQAVREVLESLWPVLE--KNPE--------YAEAGILER---LVEPERVIIFRVPWVDDKGQVQVNRGFRVQFN 85 (445)
T ss_pred cCCchHHHHHHHHHHHHHHHhc--cChh--------hhhhhHHHH---hcCCceEEEEEEEEEECCCcEEEEeeeEEEec
Confidence 3789999999999999999998 3332 112224444 49999999999999999999999999999999
Q ss_pred CCCCCCCCCceeccccCCccc--ch--hhhccCCCCCCCCHHHHHHHHHhhhhhhccccchhhhhhccchhhhhhhhhhh
Q psy8846 139 THRTPCKGATAVQSQQRNLHD--IP--EKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGI 214 (568)
Q Consensus 139 ~~rgP~KGGIR~~~~~~~~~~--l~--~t~k~~~T~~~~~~~~~~~~~~~kAa~ildpk~~~~l~~~~~~~~~r~~~~~I 214 (568)
+++||+|||+||||+++.+++ |+ |||||++ .++| ++++||+..+||+ ++|.+|+++++|+|.++|
T Consensus 86 ~~~GPakGG~R~~p~v~~~ev~aLA~~MT~K~Al--~~lP------~GGgKggI~~dP~---~~s~~Eler~~r~~~~~l 154 (445)
T PRK09414 86 SAIGPYKGGLRFHPSVNLSILKFLGFEQIFKNAL--TGLP------IGGGKGGSDFDPK---GKSDAEIMRFCQSFMTEL 154 (445)
T ss_pred CCCcCCCCceeecCCCCHHHHHHHHHHHHHHHHh--cCCC------CCCceeeeecCCc---cCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999 55 9999999 8899 8999999999998 799999999999999999
Q ss_pred hhhcCCCCcEEEEEEe-EEcC-------CCcEEEEeeEEEEecCCCC-C-CCCCeeeeCCCCH
Q psy8846 215 LLGMQPCDHIIEISFP-VRRD-------SGDYEIITGYRAQHSTHRT-P-CKGGIRFSDDVSR 267 (568)
Q Consensus 215 ~~~I~~~~rv~~v~~p-v~~d-------~G~~~~~~gyrv~h~~~~G-P-~kGGiR~~p~v~~ 267 (568)
.++|+|..++ ..| +..+ .+++..++||.+ ...-| | ..||..-....|-
T Consensus 155 ~~~iG~~~Di---papDvgt~~~~M~~~~d~y~~~~~~~~--g~vtGkp~~~gGs~gr~~aTg 212 (445)
T PRK09414 155 YRHIGPDTDV---PAGDIGVGGREIGYLFGQYKRLTNRFE--GVLTGKGLSFGGSLIRTEATG 212 (445)
T ss_pred HHhcCCCCCc---CccccCCCHHHHHHHHHHHHhhcCcce--EEEecCCcccCCCCCCCCccc
Confidence 9999999995 555 2221 133344455443 22223 2 4677665555553
No 17
>PLN02477 glutamate dehydrogenase
Probab=99.96 E-value=8.6e-30 Score=272.92 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHHHHHhhhhchHHHhhhhhhhhhhhhHHhhhccCCCcCeEEEEEEeEEecCCceEEEeeeeeeecCCCC
Q psy8846 63 KFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRT 142 (568)
Q Consensus 63 ~f~~~v~~~~~~aa~~l~~~l~~~~~~~~~~~~~~~~v~~iL~~i~~p~rvl~vsfPvr~DdG~~ev~~GYRvQHs~~rg 142 (568)
++|+++..+|++|+++++ +.++ +..+| +.|+|+|+|+|||+||||++++|+|||||||+++|
T Consensus 2 ~~~~~~~~~~~~a~~~~~--~~~~-------------~~~~l---~~p~r~~~v~~p~~~d~g~~~~~~gyRvqh~~~~G 63 (410)
T PLN02477 2 NALAATNRNFREAARLLG--LDSK-------------LEKSL---LIPFREIKVECTIPKDDGTLASFVGFRVQHDNARG 63 (410)
T ss_pred CHHHHHHHHHHHHHHHcC--CCHH-------------HHHHH---hcCceEEEEEEEEEECCCcEEEeeeeEeeecCccC
Confidence 689999999999999999 5544 44556 89999999999999999999999999999999999
Q ss_pred CCCCCceeccccCCccc--ch--hhhccCCCCCCCCHHHHHHHHHhhhhhhccccchhhhhhccchhhhhhhhhhhhhhc
Q psy8846 143 PCKGATAVQSQQRNLHD--IP--EKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGM 218 (568)
Q Consensus 143 P~KGGIR~~~~~~~~~~--l~--~t~k~~~T~~~~~~~~~~~~~~~kAa~ildpk~~~~l~~~~~~~~~r~~~~~I~~~I 218 (568)
|+||||||||.++.+|+ |+ |||||++ .++| +++.||++.+||+ ++|..|++++.|.|.++|.+++
T Consensus 64 P~kGGiR~~p~v~~~ev~~La~~MT~K~Al--~~lP------~GGgKggI~~dP~---~~s~~e~e~l~r~f~~~l~~~i 132 (410)
T PLN02477 64 PMKGGIRYHPEVDPDEVNALAQLMTWKTAV--ANIP------YGGAKGGIGCDPR---DLSESELERLTRVFTQKIHDLI 132 (410)
T ss_pred CCCCCeeecCCCCHHHHHHHHHHHHHHHHh--cCCC------CcCceeeeccCCc---cCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999 55 9999999 8889 8999999999998 8999999999999999999999
Q ss_pred CCCCcE
Q psy8846 219 QPCDHI 224 (568)
Q Consensus 219 ~~~~rv 224 (568)
++..++
T Consensus 133 G~~~Di 138 (410)
T PLN02477 133 GIHTDV 138 (410)
T ss_pred CCCCCc
Confidence 999887
No 18
>PRK14031 glutamate dehydrogenase; Provisional
Probab=99.95 E-value=7.4e-29 Score=267.24 Aligned_cols=185 Identities=11% Similarity=0.078 Sum_probs=145.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhchHHHhhhhhhhhhhhhHHhhhccCCCcCeEEEEEEeEEecCCceEEEeeeeeeec
Q psy8846 59 AENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHS 138 (568)
Q Consensus 59 ~~~p~f~~~v~~~~~~aa~~l~~~l~~~~~~~~~~~~~~~~v~~iL~~i~~p~rvl~vsfPvr~DdG~~ev~~GYRvQHs 138 (568)
..+|.|++.++.+++.-..+++. +++..-..++++++.|+|+++|+|||+||||++++|+|||||||
T Consensus 15 ~~~~e~~q~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~gyRvqhn 81 (444)
T PRK14031 15 PNEPEYHQAVEEVLSTIEEEYNK-------------HPEFDKANLIERLCIPDRVYQFRVTWVDDKGNVQTNMGYRVQHN 81 (444)
T ss_pred cCChHHHHHHHHHHHHHHHHHHh-------------ChhhhhhhHHHHhhcCceEEEEEEEEEECCCCEEEEeeEEEEec
Confidence 36899999999999987777761 11111233555559999999999999999999999999999999
Q ss_pred CCCCCCCCCceeccccCCccc--ch--hhhccCCCCCCCCHHHHHHHHHhhhhhhccccchhhhhhccchhhhhhhhhhh
Q psy8846 139 THRTPCKGATAVQSQQRNLHD--IP--EKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGI 214 (568)
Q Consensus 139 ~~rgP~KGGIR~~~~~~~~~~--l~--~t~k~~~T~~~~~~~~~~~~~~~kAa~ildpk~~~~l~~~~~~~~~r~~~~~I 214 (568)
+++||+||||||||+++.+++ |+ |||||++ .++| ++++||+..+||+ ++|.+|+++++|+|+++|
T Consensus 82 ~~lGP~kGGiR~~p~v~~~~v~aLa~~MT~K~Al--~~lP------~GGgKggi~~dP~---~~s~~Eler~~r~f~~~L 150 (444)
T PRK14031 82 NAIGPYKGGIRFHASVNLGILKFLAFEQTFKNSL--TTLP------MGGGKGGSDFSPR---GKSNAEVMRFCQAFMLEL 150 (444)
T ss_pred CCCcCCCCCeeecCCCCHHHHHHHHHHHHHHHHH--cCCC------CCCceeeeeCCCC---CCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999 44 9999999 7888 8999999999998 899999999999999999
Q ss_pred hhhcCCCCcEEEEEEe-EEcC-------CCcEEEEeeEEEEecCCCCCCCCCeeeeCCCCHHHH
Q psy8846 215 LLGMQPCDHIIEISFP-VRRD-------SGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEV 270 (568)
Q Consensus 215 ~~~I~~~~rv~~v~~p-v~~d-------~G~~~~~~gyrv~h~~~~GP~kGGiR~~p~v~~dev 270 (568)
..+|+|..++ ..| +..+ .+++..+++|..--.+-.+...||..-....|---|
T Consensus 151 ~~~iGp~~di---pApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv 211 (444)
T PRK14031 151 WRHIGPETDV---PAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGN 211 (444)
T ss_pred HhccCCCCcc---CccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHH
Confidence 9999999998 555 2221 122223444432122334455788877666665333
No 19
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=99.94 E-value=6.8e-28 Score=259.43 Aligned_cols=178 Identities=13% Similarity=0.157 Sum_probs=143.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhchHHHhhhhhhhhhhhhHHhhhccCCCcCeEEEEEEeEEecCCceEEEeeeeeeec
Q psy8846 59 AENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHS 138 (568)
Q Consensus 59 ~~~p~f~~~v~~~~~~aa~~l~~~l~~~~~~~~~~~~~~~~v~~iL~~i~~p~rvl~vsfPvr~DdG~~ev~~GYRvQHs 138 (568)
..+|.|++.|+.+++.-..+++. .+...++++.|++|+|+|+|++||+||||++++|+|||||||
T Consensus 26 ~~~~ef~qa~~e~~~~~~~~~~~---------------~~~y~~i~e~l~~Per~i~~~vp~~~D~G~v~v~~GyRVqhn 90 (454)
T PTZ00079 26 PNQPEFLQAFHEVMTSLKPLFQK---------------NPKYLGVLERLVEPERVIQFRVPWVDDKGEQRVNRGFRVQYN 90 (454)
T ss_pred CCChHHHHHHHHHHHHHHHHHHh---------------ChhHHHHHHHhccCceEEEEEEEEEECCCCEEEEeeEEEEEc
Confidence 46889999999998877666661 333457888889999999999999999999999999999999
Q ss_pred CCCCCCCCCceeccccCCccc--ch--hhhccCCCCCCCCHHHHHHHHHhhhhhhccccchhhhhhccchhhhhhhhhhh
Q psy8846 139 THRTPCKGATAVQSQQRNLHD--IP--EKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGI 214 (568)
Q Consensus 139 ~~rgP~KGGIR~~~~~~~~~~--l~--~t~k~~~T~~~~~~~~~~~~~~~kAa~ildpk~~~~l~~~~~~~~~r~~~~~I 214 (568)
+++||+|||+||||+|+.+++ |+ |||||++ .++| +++.||+..+||+ .+|.+|+++++|+|+.+|
T Consensus 91 ~alGP~kGGlRfhp~v~~~~vk~La~~mt~KnAl--~gLP------~GGgKGGi~~dPk---~~s~~El~r~~r~f~~eL 159 (454)
T PTZ00079 91 SALGPYKGGLRFHPSVNLSILKFLGFEQIFKNSL--TTLP------MGGGKGGSDFDPK---GKSDNEVMRFCQSFMTEL 159 (454)
T ss_pred CCCCCCCCCEEeeCCCCHHHHHHHHHHHHHHHHh--cCCC------CCCcceeeecCCC---CCCHHHHHHHHHHHHHHH
Confidence 999999999999999999998 54 9999999 7888 8999999999998 799999999999999999
Q ss_pred hhhcCCCCcEEEEEEe-EEcC-------CCcEEEEeeEEEEec--CCCCCCCCCeeeeCCCCH
Q psy8846 215 LLGMQPCDHIIEISFP-VRRD-------SGDYEIITGYRAQHS--THRTPCKGGIRFSDDVSR 267 (568)
Q Consensus 215 ~~~I~~~~rv~~v~~p-v~~d-------~G~~~~~~gyrv~h~--~~~GP~kGGiR~~p~v~~ 267 (568)
.++|+|..++ ..| +... .|++..+++.. .. +-.+...||....+..|-
T Consensus 160 ~~~IGp~~Dv---pA~DvGt~~rem~~~~~~y~~~~~~~--~gv~TGK~~~~GGs~~r~eATG 217 (454)
T PTZ00079 160 YRHIGPDTDV---PAGDIGVGGREIGYLFGQYKKLRNNF--EGTLTGKNVKWGGSNIRPEATG 217 (454)
T ss_pred HHhcCCCCcc---chhhcCCCHHHHHHHHHHHHHHhCCC--CceeCCCCCCCCCCCCCCcccH
Confidence 9999999998 555 2211 11122222211 11 223346688877777774
No 20
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=99.94 E-value=3.8e-27 Score=249.24 Aligned_cols=174 Identities=21% Similarity=0.243 Sum_probs=140.2
Q ss_pred CHHHHHHHHHHHHHHHhhhhchHHHhhhhhhhhhhhhHHhhhccCCCcCeEEEEEEeEEecCCceEEEeeeeeeecCCCC
Q psy8846 63 KFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRT 142 (568)
Q Consensus 63 ~f~~~v~~~~~~aa~~l~~~l~~~~~~~~~~~~~~~~v~~iL~~i~~p~rvl~vsfPvr~DdG~~ev~~GYRvQHs~~rg 142 (568)
++|+++..++.++++.+. +.+ ++++.++.|+|+++|++||+||||++++|+|||||||+++|
T Consensus 2 ~~~~~a~~~~~~~~~~~~--~~~----------------~~~e~l~~p~r~i~~~i~v~~d~g~~~~~~g~rvqhn~a~G 63 (411)
T COG0334 2 NEFEQAVKELEKALEPLY--LDE----------------GVLERLKEPERVIQVRIPVRMDDGSVKVFRGYRVQHNSALG 63 (411)
T ss_pred cHHHHHHHHHHHhhhhcc--Cch----------------hHHHHhcCceeEEEEEEEEEEcCCcEeeeEEEEEEecCCcC
Confidence 467778888888877755 222 33444499999999999999999999999999999999999
Q ss_pred CCCCCceeccccCCccc--ch--hhhccCCCCCCCCHHHHHHHHHhhhhhhccccchhhhhhccchhhhhhhhhhhhhhc
Q psy8846 143 PCKGATAVQSQQRNLHD--IP--EKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGM 218 (568)
Q Consensus 143 P~KGGIR~~~~~~~~~~--l~--~t~k~~~T~~~~~~~~~~~~~~~kAa~ildpk~~~~l~~~~~~~~~r~~~~~I~~~I 218 (568)
|+||||||||.||.+++ |+ |||||++ .++| +++.|++.++||| .+|++|+++++|.|.++|..++
T Consensus 64 P~kGGiRfhP~v~~~ev~~Ls~~MT~Knal--~~Lp------~GGGKGgi~~DPk---~~S~~E~erl~raf~~~i~~~i 132 (411)
T COG0334 64 PYKGGVRFHPYVTLEEVKALSFWMTLKNAL--AGLP------YGGGKGGIIVDPK---GLSDGELERLSRAFGRAIYRLI 132 (411)
T ss_pred CccCceecCCCCCHHHHHHHHHHHHHHHHH--hCCC------CCCCceeeeCCcc---cCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999 55 9999999 7888 9999999999998 8999999999999999999999
Q ss_pred CCCCcEEEEEEe-EEcC-------CCcEEEEeeEEEE-ecCCCCCCCCCeeeeCCCCHH
Q psy8846 219 QPCDHIIEISFP-VRRD-------SGDYEIITGYRAQ-HSTHRTPCKGGIRFSDDVSRD 268 (568)
Q Consensus 219 ~~~~rv~~v~~p-v~~d-------~G~~~~~~gyrv~-h~~~~GP~kGGiR~~p~v~~d 268 (568)
+|..++ +.| |..+ .+++..+.|...- --|-.++..||..-.+..|--
T Consensus 133 Gp~~dI---pApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~ 188 (411)
T COG0334 133 GPDTDI---PAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGY 188 (411)
T ss_pred CCCcEe---cccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCcccce
Confidence 999998 666 4333 2333333221110 113356778999888887753
No 21
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=99.89 E-value=5.5e-23 Score=201.50 Aligned_cols=152 Identities=19% Similarity=0.157 Sum_probs=127.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccccCCCChhhHhcc
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKI 432 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~~It~~na~~i 432 (568)
|+||+++|+.|++.|++|++ +| .+.+++.++++.. +++.+++++++..+|||++|||++++||++|++++
T Consensus 37 G~vG~~~A~~L~~~G~~Vvv-~D--~~~~~~~~~~~~~-------g~~~v~~~~l~~~~~Dv~vp~A~~~~I~~~~~~~l 106 (200)
T cd01075 37 GKVGYKLAEHLLEEGAKLIV-AD--INEEAVARAAELF-------GATVVAPEEIYSVDADVFAPCALGGVINDDTIPQL 106 (200)
T ss_pred CHHHHHHHHHHHHCCCEEEE-Ec--CCHHHHHHHHHHc-------CCEEEcchhhccccCCEEEecccccccCHHHHHHc
Confidence 99999999999999999994 54 5778888777653 56777888999999999999999999999999999
Q ss_pred cceEEEecCCcchH-HHHHHHhccCCCcccccCcHHHHhh--c-cC-CC---cHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy8846 433 QAKIIAEAANESVQ-ESLERRFGNVGGRIPVTPSESFQKR--I-SG-AS---EKDIVHSGLDYTMERSARAIMKTAMKYN 504 (568)
Q Consensus 433 ~AkiIvE~AN~~~~-~~l~~~l~~~GggI~vvPde~~q~~--~-~~-~w---e~e~V~~~L~~~M~~a~~~V~~~a~~~~ 504 (568)
+|++|+|+||+|++ +...+.|.++ ||.++||...+.. + .+ -| .+++|+++++.+ .+++.+|++.+++++
T Consensus 107 ~~~~v~~~AN~~~~~~~~~~~L~~~--Gi~~~Pd~~~NaGGv~~~~~e~~~~~~~~~~~~~~~~-~~~~~~v~~~a~~~~ 183 (200)
T cd01075 107 KAKAIAGAANNQLADPRHGQMLHER--GILYAPDYVVNAGGLINVADELYGGNEARVLAKVEAI-YDTLLEIFAQAKQDG 183 (200)
T ss_pred CCCEEEECCcCccCCHhHHHHHHHC--CCEEeCceeeeCcCceeehhHHhCCcHHHHHHHHHHH-HHHHHHHHHHHHHhC
Confidence 99999999999987 6666667766 5999999443221 0 00 01 267899999988 789999999999998
Q ss_pred CCCCChhhhhhhheee
Q psy8846 505 LGHLDINAHACVTGKP 520 (568)
Q Consensus 505 ~~~~dlR~AAyi~Ai~ 520 (568)
+++|+|||.+|+.
T Consensus 184 ---~~~~~aA~~~a~~ 196 (200)
T cd01075 184 ---ITTLEAADRMAEE 196 (200)
T ss_pred ---cCHHHHHHHHHHH
Confidence 8999999999986
No 22
>PF02812 ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; InterPro: IPR006097 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the dimerisation region of these enzymes.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2BMA_C 1C1D_B 1BXG_A 1BW9_B 1C1X_A 2YFQ_B 3R3J_D 1V9L_C 1B26_C 2TMG_B ....
Probab=99.87 E-value=1.6e-23 Score=192.74 Aligned_cols=104 Identities=22% Similarity=0.248 Sum_probs=95.9
Q ss_pred cCeEEEEEEeEEecCCceEEEeeeeeeecCCCCCCCCCceeccccCCccc--ch--hhhccCCCCCCCCHHHHHHHHHhh
Q psy8846 110 CDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGATAVQSQQRNLHD--IP--EKLKDIPTAENPKFFDMVEFFFHR 185 (568)
Q Consensus 110 p~rvl~vsfPvr~DdG~~ev~~GYRvQHs~~rgP~KGGIR~~~~~~~~~~--l~--~t~k~~~T~~~~~~~~~~~~~~~k 185 (568)
|+|+++|+|||+||||+.+.++|||||||+++||+||||||||.++.+|+ |+ |||||++ .++| ++++|
T Consensus 1 pe~v~~~~~~~~~d~g~~~~~~g~~v~h~~~~GPa~GGiR~~~~~s~~ev~~LA~~MT~K~Al--~~lp------~GGaK 72 (131)
T PF02812_consen 1 PERVIQVRVPVVMDDGPITGLRGYRVQHSTARGPAKGGIRMHPYVSEEEVLRLARGMTYKCAL--AGLP------FGGAK 72 (131)
T ss_dssp -SEEEEEEEEEEETTSCEEEEEEEEEEEE-SSSSEEEEEEEETTSSHHHHHHHHHHHHHHHHH--TTSS-------EEEE
T ss_pred CCEEEEEEEEEEeCCCCEEEEEEEEEEEcCCCCCCCCCeEEecCCCHHHHHHHHHHHHhhhhh--ccCC------CCcee
Confidence 89999999999999999999999999999999999999999999999998 55 9999999 7889 89999
Q ss_pred hhhhccccchhhhhhccchhhhhhhhhhhhhhcCCCCcE
Q psy8846 186 ACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHI 224 (568)
Q Consensus 186 Aa~ildpk~~~~l~~~~~~~~~r~~~~~I~~~I~~~~rv 224 (568)
+++.+||+ +++..+++++.|.|...+.++|++...+
T Consensus 73 ggI~~dp~---~~s~~e~e~l~r~f~~~l~~~i~~~~~i 108 (131)
T PF02812_consen 73 GGIKIDPK---DLSDNERERLTRRFGRALSPFIGPGRDI 108 (131)
T ss_dssp EEEESSGG---GS-HHHHHHHHHHHHHHHGGGSBTTTEE
T ss_pred EEeecCcc---cccHHHHHHHHHHHHHHHHHHhccCcEE
Confidence 99999997 8999999999999999999999998877
No 23
>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase. Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.
Probab=99.74 E-value=3.9e-18 Score=150.69 Aligned_cols=87 Identities=33% Similarity=0.537 Sum_probs=76.4
Q ss_pred ceEEeeccccCCCChhhHhcccceEEEecCCcchHHHHHHHhccCCCcccccCc-------------HHHHhhccCCCcH
Q psy8846 412 CDIFVPAAVEKVITKNNAHKIQAKIIAEAANESVQESLERRFGNVGGRIPVTPS-------------ESFQKRISGASEK 478 (568)
Q Consensus 412 cDIliPaAl~~~It~~na~~i~AkiIvE~AN~~~~~~l~~~l~~~GggI~vvPd-------------e~~q~~~~~~we~ 478 (568)
||||+|||++++||++|+++|+||+|+||||+|+++...+.|.++ ||+|+|| ||.|+.+. ++
T Consensus 3 ~DI~~PcA~~~~I~~~~a~~l~a~~V~egAN~~~t~~a~~~L~~r--Gi~~~PD~~~NaGGvi~s~~E~~~~~~~---~~ 77 (102)
T smart00839 3 CDIFIPCALQNVINEANANRLGAKIIAEGANMPLTDEADDILEDR--GVLYAPDFAANAGGVIVSALEMLQNLAR---TA 77 (102)
T ss_pred cCEEEeCCCcCcCCHHHHHHcCCeEEEecCCCCCCHHHHHHHHHC--CCEEcCcceecCCCEEeehhhhhcccCC---CH
Confidence 999999999999999999999999999999999977777777777 5899999 44444332 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8846 479 DIVHSGLDYTMERSARAIMKTAMKY 503 (568)
Q Consensus 479 e~V~~~L~~~M~~a~~~V~~~a~~~ 503 (568)
|+|.+++.+.|.+++.++++.++++
T Consensus 78 e~v~~~~~~~i~~~~~~v~~~a~~~ 102 (102)
T smart00839 78 EEVFTDLSEIMRNALEEIFETAQKY 102 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999998864
No 24
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=99.32 E-value=3.7e-13 Score=156.02 Aligned_cols=186 Identities=13% Similarity=0.171 Sum_probs=129.6
Q ss_pred hhccCCCcCeEEEEEEeEEecCCceEEEeeeeeeecCCCCCCCCCceeccc-----------cCCccc--ch--hhhccC
Q psy8846 103 ILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGATAVQSQ-----------QRNLHD--IP--EKLKDI 167 (568)
Q Consensus 103 iL~~i~~p~rvl~vsfPvr~DdG~~ev~~GYRvQHs~~rgP~KGGIR~~~~-----------~~~~~~--l~--~t~k~~ 167 (568)
.|..++.|++.+.|.||+ | ..|+|||+||+.. +||||||||+ ++.+|+ |+ |+|||+
T Consensus 465 ~l~~l~~P~~p~~v~fv~----G--~~f~G~hvR~~di---ARGGiR~~~s~~~edy~tn~~~~~dEv~~LA~tqt~KNa 535 (1002)
T PTZ00324 465 FLSELEYPRVPYGVFLVA----G--AQFRGFHIRFTDI---ARGGVRMIQSFKEQAYRRNKRSVFDENYNLASTQLLKNK 535 (1002)
T ss_pred HHhhcCCCCceEEEEEEE----C--CcEEEEEEecCCc---ccceeEEecCcchhhhhhcccCcHHHHHHHHHHHHHhcC
Confidence 344558999999999999 5 9999999999999 9999999998 777888 55 999997
Q ss_pred CCCCCCCHHHHHHHHHhhhhhhccccchhhhhh---ccchhhhhhhhhhhhhhcCCCCcEE--------EEEEeEEcCCC
Q psy8846 168 PTAENPKFFDMVEFFFHRACQIAEDKLVEDIKG---RMTIEDKKKKVRGILLGMQPCDHII--------EISFPVRRDSG 236 (568)
Q Consensus 168 ~T~~~~~~~~~~~~~~~kAa~ildpk~~~~l~~---~~~~~~~r~~~~~I~~~I~~~~rv~--------~v~~pv~~d~G 236 (568)
+.| ++|+||+.++||+ .++. .|+++..|+|+++|+++|+|+.+++ -|..| |.+
T Consensus 536 ----dIP------~GGaKGgi~vdp~---~~~~~~~~e~er~~r~yi~aLlDli~p~~dIVd~~~~de~l~~aP---D~n 599 (1002)
T PTZ00324 536 ----DIP------EGGSKGTILLSSR---YLNKFAQVRCQHAFLQYIDALLDVMLPGEKVVDHLKQEEIIFLGP---DEH 599 (1002)
T ss_pred ----CCC------CCCCeEEEEeCCc---ccchhhHHHHHHHHHHHHHHHHHhcCCCcccccccCCccccccCC---CCC
Confidence 678 8999999999996 5554 7899999999999999999998752 22233 332
Q ss_pred cEEEEeeEEEEecCCC-----------CCC-CCCeeeeC-CCCH----HHHHHHHHHhhHh-----hhhcCCCCCCce--
Q psy8846 237 DYEIITGYRAQHSTHR-----------TPC-KGGIRFSD-DVSR----DEVKALSALMTFK-----CACVDVPFGGAK-- 292 (568)
Q Consensus 237 ~~~~~~gyrv~h~~~~-----------GP~-kGGiR~~p-~v~~----dev~aLA~~MT~K-----~Al~~lP~GGaK-- 292 (568)
....+..|-..|+..+ +|. .||+--.. .+|- .=++.+.+.|-+. .++.|=|||---
T Consensus 600 tta~~mdwa~~~s~~rG~~~~~af~TGKp~~lGG~~hk~yG~T~rGv~~~v~~~~~~lgid~~~~Tv~~~Ggp~GDVGgN 679 (1002)
T PTZ00324 600 TTGTLMDWAALHAKKRGYPFWKSFTTGKSPSMGGIPHDTYGMTTRSVRAYVTGILEKLGLNEEEVTKFQTGGPDGDLGSN 679 (1002)
T ss_pred CCHHHHHHHHHHHHHcCCCCCCCEEeCCCcccCCcCCCcCcccchhHHHHHHHHHHHcCCCccCCEEEEECCCCchHHHH
Confidence 2333333333222222 343 57876554 4443 2233333333332 223333343211
Q ss_pred ---------------eEeeCCCCCCCHHHHHHHHHH
Q psy8846 293 ---------------AGIKINPKNYSENELEKITRR 313 (568)
Q Consensus 293 ---------------ggI~~dP~~~s~~Eler~~r~ 313 (568)
.|+.+||..++..||.|+...
T Consensus 680 ~~lls~~klVAv~D~~G~~~DP~GLd~~EL~rl~~~ 715 (1002)
T PTZ00324 680 ELLLSKEKTVGIVDGSGVLHDPEGLNREELRRLAHH 715 (1002)
T ss_pred HHHHhCCEEEEEEcCCCEEECCCCCCHHHHHHHHHc
Confidence 267789999999999998765
No 25
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=98.27 E-value=1.6e-05 Score=97.54 Aligned_cols=65 Identities=25% Similarity=0.288 Sum_probs=51.1
Q ss_pred CCCCCeeeeCCC-C-HHHHHHHHHHhhHhhhhcCCCCCCceeEeeCCCCCC--CHH----HHHHHHHHHHHHHhh
Q psy8846 254 PCKGGIRFSDDV-S-RDEVKALSALMTFKCACVDVPFGGAKAGIKINPKNY--SEN----ELEKITRRFTLELAK 320 (568)
Q Consensus 254 P~kGGiR~~p~v-~-~dev~aLA~~MT~K~Al~~lP~GGaKggI~~dP~~~--s~~----Eler~~r~f~~~L~~ 320 (568)
-+.||+|++... + ..||..|+..+..|| +.||=||||||+.++.... ++. |....++.|++.|.+
T Consensus 733 VARGGlRwSdR~eDfRtEvlgL~kaQ~vKN--avIvp~GsKGgfv~k~~~~~~~r~~~~~~~~~~y~~fi~~lLd 805 (1528)
T PF05088_consen 733 VARGGLRWSDRPEDFRTEVLGLVKAQQVKN--AVIVPVGSKGGFVVKQLPDPADRDAWQAEGIACYKTFIRALLD 805 (1528)
T ss_pred cccCcccccCCHHHHHHHHHHHHHHHHhcC--CcccCCCCceeEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 688999995432 1 389999999999999 7789999999999855433 444 556777889998876
No 26
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=97.82 E-value=0.00024 Score=85.23 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=47.7
Q ss_pred CCCCCeeeeCCCC---HHHHHHHHHHhhHhhhhcCCCCCCceeEeeCCC--CCCCHHHHH----HHHHHHHHHHhh
Q psy8846 254 PCKGGIRFSDDVS---RDEVKALSALMTFKCACVDVPFGGAKAGIKINP--KNYSENELE----KITRRFTLELAK 320 (568)
Q Consensus 254 P~kGGiR~~p~v~---~dev~aLA~~MT~K~Al~~lP~GGaKggI~~dP--~~~s~~Ele----r~~r~f~~~L~~ 320 (568)
-+.||+|++ +-. .+|+..|+.....|| +.||=+|||||+.+.+ ..-++.|+. .-+..|++.|..
T Consensus 795 VARGGLRws-DR~~D~rtEvlgLvKAQqvKN--avIvpvGAKGgf~~k~lp~g~~RD~i~~eg~~~Yk~Fi~~Lld 867 (1592)
T COG2902 795 VARGGLRWS-DRNQDFRTEVLGLVKAQQVKN--AVIVPVGAKGGFLLKRLPTGGDRDAIFAEGIACYKAFISGLLD 867 (1592)
T ss_pred ccccccccc-ccchhHHHHHHHHHHHHHhcC--CcccccCCcceEecccCCCCCchHHHHHhhHHHHHHHHHHHHH
Confidence 477999998 433 389999999999999 6789999999999865 344566543 344556666544
No 27
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.76 E-value=1.1e-05 Score=85.68 Aligned_cols=144 Identities=14% Similarity=0.212 Sum_probs=97.2
Q ss_pred cCHHHHHHHHHHH--------CC--CeEeEeCCC--------CCCHHHHHHHHHhcCCcccCC---CCeecCCCCcc-cc
Q psy8846 353 GPVSMYLPQIWVQ--------EK--GKCPGLPTH--------TRKPLALEEYKLDNGTIVGFP---GAVPYEGENLM-YE 410 (568)
Q Consensus 353 GnVG~~~A~~L~~--------~G--akvvaVsD~--------GiD~~~L~~~~~~~g~v~~~~---ga~~i~~~~ll-~~ 410 (568)
||||+++++.|.+ .| .+|++|+|+ |+|++++.++++++|++..|+ +...++.++++ +.
T Consensus 11 GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~ 90 (336)
T PRK08374 11 GNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFSPEEIVEEI 90 (336)
T ss_pred CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCCHHHHHhcC
Confidence 9999999999987 56 899999996 899999999999999888875 22334566777 58
Q ss_pred cceEEeeccccCCCChhhHhcccceEEEecCC-----c-ch---HHHHHHHh----------ccCCCcccccCcHHHHhh
Q psy8846 411 PCDIFVPAAVEKVITKNNAHKIQAKIIAEAAN-----E-SV---QESLERRF----------GNVGGRIPVTPSESFQKR 471 (568)
Q Consensus 411 ~cDIliPaAl~~~It~~na~~i~AkiIvE~AN-----~-~~---~~~l~~~l----------~~~GggI~vvPde~~q~~ 471 (568)
+|||+| +.++.+++..+.++++.+|-+ - ++ .+.|.+.. .+.++|++++- -+++.
T Consensus 91 ~~DVvV-----d~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPii~--~l~~~ 163 (336)
T PRK08374 91 DADIVV-----DVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPIIG--LLREN 163 (336)
T ss_pred CCCEEE-----ECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCchH--HHHhh
Confidence 999999 445678888888777777655 2 22 12222221 22333454332 12222
Q ss_pred cc--------C--CCcHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy8846 472 IS--------G--ASEKDIVHSGLDYTMERSARAIMKTAMKYNL 505 (568)
Q Consensus 472 ~~--------~--~we~e~V~~~L~~~M~~a~~~V~~~a~~~~~ 505 (568)
.. | --+-.-+.++++ -..+|.+++..|++.++
T Consensus 164 l~g~~i~~i~GIlnGT~nyIl~~m~--~g~~f~eal~eAq~~Gy 205 (336)
T PRK08374 164 LLGDTVKRIEAVVNATTTFILTRME--QGKTFEEALKEAQTLGI 205 (336)
T ss_pred ccccceEEEEEEEechHHHHHHHhh--CCCCHHHHHHHHHHcCC
Confidence 11 1 124455677775 35679999999998764
No 28
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.86 E-value=0.00098 Score=70.69 Aligned_cols=146 Identities=16% Similarity=0.125 Sum_probs=89.4
Q ss_pred cCHHHHHHHHHHH--------CCCeEeEeCCC--------CCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEe
Q psy8846 353 GPVSMYLPQIWVQ--------EKGKCPGLPTH--------TRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFV 416 (568)
Q Consensus 353 GnVG~~~A~~L~~--------~GakvvaVsD~--------GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIli 416 (568)
||||+.+++.|.+ .+.+||+|+|+ |||++++.+++++ |++..|+ .+.++.++++..+|||+|
T Consensus 9 G~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~-~~~~~~~~ll~~~~DVvV 86 (326)
T PRK06392 9 GNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEID-YEKIKFDEIFEIKPDVIV 86 (326)
T ss_pred CHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCC-CCcCCHHHHhcCCCCEEE
Confidence 9999999999987 47899999997 9999999998866 7776653 122344567788999999
Q ss_pred eccccCCCChh---h--HhcccceEEEecCCcc-hH---HHHHHHh----------ccCCCcccccCcHHHHhhc-----
Q psy8846 417 PAAVEKVITKN---N--AHKIQAKIIAEAANES-VQ---ESLERRF----------GNVGGRIPVTPSESFQKRI----- 472 (568)
Q Consensus 417 PaAl~~~It~~---n--a~~i~AkiIvE~AN~~-~~---~~l~~~l----------~~~GggI~vvPde~~q~~~----- 472 (568)
-|+-.+ -+.. . ..-++...=+=-||-. +. +.|.+.. +.-|+|++++-- ++...
T Consensus 87 E~t~~~-~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~Pii~~--~~~~~~g~~i 163 (326)
T PRK06392 87 DVTPAS-KDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVPLFSL--RDYSTLPSRI 163 (326)
T ss_pred ECCCCC-CcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccchhhh--hhhhcccCCE
Confidence 998543 1211 1 2234443333367733 21 2222221 223445654432 12111
Q ss_pred ---cC--CCcHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy8846 473 ---SG--ASEKDIVHSGLDYTMERSARAIMKTAMKYNL 505 (568)
Q Consensus 473 ---~~--~we~e~V~~~L~~~M~~a~~~V~~~a~~~~~ 505 (568)
.| --+-..+.++++ -..+|.+++..|++.++
T Consensus 164 ~~i~GilnGT~nyIl~~m~--~g~~f~~al~eAq~lG~ 199 (326)
T PRK06392 164 KNFRGIVSSTINYVIRQEA--NGRGFLDVVKIAQKMGI 199 (326)
T ss_pred EEEEEEEeChHHHHHhhcc--CCCCHHHHHHHHHHcCC
Confidence 11 124455666665 25678888889988764
No 29
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=93.37 E-value=0.18 Score=42.76 Aligned_cols=53 Identities=25% Similarity=0.264 Sum_probs=43.2
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccccCCCChh--hHh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKN--NAH 430 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~~It~~--na~ 430 (568)
|++|..+++.|.+.|.+.|.++|. ||+++|...+.+..+ +..
T Consensus 32 G~~g~~~a~~l~~~~~~~v~v~~r------------------------------------di~i~~~~~~~~~~~~~~~~ 75 (86)
T cd05191 32 GEVGKGIAKLLADEGGKKVVLCDR------------------------------------DILVTATPAGVPVLEEATAK 75 (86)
T ss_pred CHHHHHHHHHHHHcCCCEEEEEcC------------------------------------CEEEEcCCCCCCchHHHHHh
Confidence 999999999999986555665544 999999988877766 677
Q ss_pred cccceEEEecC
Q psy8846 431 KIQAKIIAEAA 441 (568)
Q Consensus 431 ~i~AkiIvE~A 441 (568)
..++.+|++.|
T Consensus 76 ~~~~~~v~~~a 86 (86)
T cd05191 76 INEGAVVIDLA 86 (86)
T ss_pred cCCCCEEEecC
Confidence 77888998865
No 30
>PRK06270 homoserine dehydrogenase; Provisional
Probab=92.64 E-value=0.15 Score=54.44 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=55.3
Q ss_pred cCHHHHHHHHHHHC----------CCeEeEeCCC--------CCCHHHHHHHHHhcCCcccCCCCe-ecCCCCcc-cccc
Q psy8846 353 GPVSMYLPQIWVQE----------KGKCPGLPTH--------TRKPLALEEYKLDNGTIVGFPGAV-PYEGENLM-YEPC 412 (568)
Q Consensus 353 GnVG~~~A~~L~~~----------GakvvaVsD~--------GiD~~~L~~~~~~~g~v~~~~ga~-~i~~~~ll-~~~c 412 (568)
|+||+.+++.|.+. +.+|++|+|+ |+|.+++.++...+|.+..|++.. ..+.++++ ..++
T Consensus 11 G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ell~~~~~ 90 (341)
T PRK06270 11 GGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGLEVIRSVDA 90 (341)
T ss_pred CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHHHHhhccCC
Confidence 99999999999765 6899999995 799999999888888777776432 22344555 3679
Q ss_pred eEEeeccccCCC
Q psy8846 413 DIFVPAAVEKVI 424 (568)
Q Consensus 413 DIliPaAl~~~I 424 (568)
||++-|.-.+.-
T Consensus 91 DvVvd~T~s~~~ 102 (341)
T PRK06270 91 DVVVEATPTNIE 102 (341)
T ss_pred CEEEECCcCccc
Confidence 999999765443
No 31
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=89.27 E-value=2.4 Score=43.68 Aligned_cols=170 Identities=23% Similarity=0.333 Sum_probs=102.9
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCc---ccc--cceEEeeccccCCCChh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENL---MYE--PCDIFVPAAVEKVITKN 427 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~l---l~~--~cDIliPaAl~~~It~~ 427 (568)
|..|.++++.|.+.|..||+ .++|.+++.+.++.. .+ ++..+ +++ |.. -+=+.+||+ .||..
T Consensus 9 GrMG~n~v~rl~~~ghdvV~---yD~n~~av~~~~~~g--a~---~a~sl--~el~~~L~~pr~vWlMvPag---~it~~ 75 (300)
T COG1023 9 GRMGANLVRRLLDGGHDVVG---YDVNQTAVEELKDEG--AT---GAASL--DELVAKLSAPRIVWLMVPAG---DITDA 75 (300)
T ss_pred chhhHHHHHHHHhCCCeEEE---EcCCHHHHHHHHhcC--Cc---cccCH--HHHHHhcCCCcEEEEEccCC---CchHH
Confidence 89999999999999999999 789999988887752 11 12111 111 221 133678885 44554
Q ss_pred hHh----ccc-ceEEEecCCcchHHHHHHH--hcc----------CCC--------ccccc-CcHHHHhh-------c--
Q psy8846 428 NAH----KIQ-AKIIAEAANESVQESLERR--FGN----------VGG--------RIPVT-PSESFQKR-------I-- 472 (568)
Q Consensus 428 na~----~i~-AkiIvE~AN~~~~~~l~~~--l~~----------~Gg--------gI~vv-Pde~~q~~-------~-- 472 (568)
.++ .+. --+|++|-|.-..+.+++. |.. +|| ...|- |++-|+.. .
T Consensus 76 vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~~lA~g 155 (300)
T COG1023 76 VIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALAPG 155 (300)
T ss_pred HHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHHHHHHHHHHHHhhCcC
Confidence 444 443 4799999997765444331 221 221 11122 22222221 0
Q ss_pred -cCC---------CcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhhhh-----------h-----eee--cccC
Q psy8846 473 -SGA---------SEKDIVHSGLDYTMERSARAIMKTAMKYNLGHLDINAHACV-----------T-----GKP--INQG 524 (568)
Q Consensus 473 -~~~---------we~e~V~~~L~~~M~~a~~~V~~~a~~~~~~~~dlR~AAyi-----------~-----Ai~--i~a~ 524 (568)
.+| -=-.-|++++|+-|-+|+.+=++.-++.+.+ .|++.-|=+ + |++ -+-.
T Consensus 156 e~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD-~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~ 234 (300)
T COG1023 156 EDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFD-YDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLD 234 (300)
T ss_pred cCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHH
Confidence 011 1234599999999999999999888886544 677665422 1 222 1444
Q ss_pred cccceeecCCCc
Q psy8846 525 GIHGRISATGRG 536 (568)
Q Consensus 525 ~~~G~~~atg~g 536 (568)
.+.|+.+.+|-|
T Consensus 235 q~~g~v~dSGEG 246 (300)
T COG1023 235 QISGRVSDSGEG 246 (300)
T ss_pred HhcCeeccCCCc
Confidence 567888888877
No 32
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=88.90 E-value=0.52 Score=44.59 Aligned_cols=94 Identities=16% Similarity=0.159 Sum_probs=61.9
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccccCCCChhhHhc-
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHK- 431 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~~It~~na~~- 431 (568)
|++|+.+|+.|.+.|..|.+ .+.+.+++.+..++ +++..+.-+=+...||+++-|--...-..+....
T Consensus 10 G~mG~~~a~~L~~~g~~v~~---~d~~~~~~~~~~~~--------g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~ 78 (163)
T PF03446_consen 10 GNMGSAMARNLAKAGYEVTV---YDRSPEKAEALAEA--------GAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGE 78 (163)
T ss_dssp SHHHHHHHHHHHHTTTEEEE---EESSHHHHHHHHHT--------TEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCeEEe---eccchhhhhhhHHh--------hhhhhhhhhhHhhcccceEeecccchhhhhhhhhh
Confidence 99999999999999999987 56788888887765 3555443333456789998875543333333332
Q ss_pred -----c-cceEEEecCCcch--HHHHHHHhccCC
Q psy8846 432 -----I-QAKIIAEAANESV--QESLERRFGNVG 457 (568)
Q Consensus 432 -----i-~AkiIvE~AN~~~--~~~l~~~l~~~G 457 (568)
+ +-++|++-.+... ...+.+++..+|
T Consensus 79 ~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g 112 (163)
T PF03446_consen 79 NILAGLRPGKIIIDMSTISPETSRELAERLAAKG 112 (163)
T ss_dssp THGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT
T ss_pred HHhhccccceEEEecCCcchhhhhhhhhhhhhcc
Confidence 3 5689999888554 345666666664
No 33
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=86.01 E-value=0.59 Score=39.74 Aligned_cols=79 Identities=15% Similarity=0.197 Sum_probs=54.3
Q ss_pred cCHHHHHHHHHHHCC---CeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeec--CCCCcccccceEEeeccccCCCChh
Q psy8846 353 GPVSMYLPQIWVQEK---GKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPY--EGENLMYEPCDIFVPAAVEKVITKN 427 (568)
Q Consensus 353 GnVG~~~A~~L~~~G---akvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i--~~~~ll~~~cDIliPaAl~~~It~~ 427 (568)
||+|.++++-|.+.| .+|..++ .-+.+++.++.++.+ .... ++.+++. .|||++.|--...+.+
T Consensus 8 G~mg~al~~~l~~~g~~~~~v~~~~--~r~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~advvilav~p~~~~~- 76 (96)
T PF03807_consen 8 GNMGSALARGLLASGIKPHEVIIVS--SRSPEKAAELAKEYG-------VQATADDNEEAAQ-EADVVILAVKPQQLPE- 76 (96)
T ss_dssp SHHHHHHHHHHHHTTS-GGEEEEEE--ESSHHHHHHHHHHCT-------TEEESEEHHHHHH-HTSEEEE-S-GGGHHH-
T ss_pred CHHHHHHHHHHHHCCCCceeEEeec--cCcHHHHHHHHHhhc-------cccccCChHHhhc-cCCEEEEEECHHHHHH-
Confidence 999999999999999 8888654 348888888877753 2222 3445665 8999999866554433
Q ss_pred hHhcc----cceEEEecCC
Q psy8846 428 NAHKI----QAKIIAEAAN 442 (568)
Q Consensus 428 na~~i----~AkiIvE~AN 442 (568)
-+..+ +-++|+.-+|
T Consensus 77 v~~~i~~~~~~~~vis~~a 95 (96)
T PF03807_consen 77 VLSEIPHLLKGKLVISIAA 95 (96)
T ss_dssp HHHHHHHHHTTSEEEEEST
T ss_pred HHHHHhhccCCCEEEEeCC
Confidence 34333 5677776665
No 34
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=85.79 E-value=5.4 Score=41.51 Aligned_cols=150 Identities=18% Similarity=0.216 Sum_probs=83.6
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeec-CCCCcccc--cceEEeeccccCCCChhhH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPY-EGENLMYE--PCDIFVPAAVEKVITKNNA 429 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i-~~~~ll~~--~cDIliPaAl~~~It~~na 429 (568)
|++|..+|+.|.+.|.+|++ .+.+.+++.+..+. |++.. +.+++... .+|+++-|.-......+..
T Consensus 9 G~MG~~mA~~L~~~g~~v~v---~dr~~~~~~~~~~~--------g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~ 77 (301)
T PRK09599 9 GRMGGNMARRLLRGGHEVVG---YDRNPEAVEALAEE--------GATGADSLEELVAKLPAPRVVWLMVPAGEITDATI 77 (301)
T ss_pred cHHHHHHHHHHHHCCCeEEE---EECCHHHHHHHHHC--------CCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH
Confidence 99999999999999999877 34567776665442 23333 23344433 4688766644432333333
Q ss_pred hc----cc-ceEEEecCCcch--HHHHHHHhccCCCccccc---------------------CcHHH---Hhh---ccC-
Q psy8846 430 HK----IQ-AKIIAEAANESV--QESLERRFGNVGGRIPVT---------------------PSESF---QKR---ISG- 474 (568)
Q Consensus 430 ~~----i~-AkiIvE~AN~~~--~~~l~~~l~~~GggI~vv---------------------Pde~~---q~~---~~~- 474 (568)
.. ++ -.+|++..+... ...+.+.+.++| +.++ |++.+ +.. .+.
T Consensus 78 ~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g--~~~~dapvsG~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~~~ 155 (301)
T PRK09599 78 DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKG--IHFVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALAPR 155 (301)
T ss_pred HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcC--CEEEeCCCCcCHHHHhcCCeEEecCCHHHHHHHHHHHHHHccc
Confidence 33 32 357788777442 223444443332 2211 11111 111 111
Q ss_pred -------------CCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhhhh
Q psy8846 475 -------------ASEKDIVHSGLDYTMERSARAIMKTAMKYNLGHLDINAHACV 516 (568)
Q Consensus 475 -------------~we~e~V~~~L~~~M~~a~~~V~~~a~~~~~~~~dlR~AAyi 516 (568)
......+++-|...+..++.+-+..+++++.+ +|+.+..-+
T Consensus 156 ~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~g-ld~~~~~~~ 209 (301)
T PRK09599 156 AEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFD-LDLAAVAEV 209 (301)
T ss_pred ccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHH
Confidence 12356677777788888888899999883322 776665443
No 35
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=85.10 E-value=2.6 Score=45.15 Aligned_cols=142 Identities=17% Similarity=0.207 Sum_probs=83.5
Q ss_pred cCHHHHHHHHHHHC----------CCeEeEeCCC------CCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEe
Q psy8846 353 GPVSMYLPQIWVQE----------KGKCPGLPTH------TRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFV 416 (568)
Q Consensus 353 GnVG~~~A~~L~~~----------GakvvaVsD~------GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIli 416 (568)
|+||+.+++.|.+. ..++++|+|+ ++|...+ ..+..++... .+.+-+...+.||++
T Consensus 12 G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~dvvv 83 (333)
T COG0460 12 GTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNA-EVWTTDGALS-------LGDEVLLDEDIDVVV 83 (333)
T ss_pred CchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccch-hhheeccccc-------ccHhhhccccCCEEE
Confidence 99999999999873 5688888888 4444444 3333322211 223456778899999
Q ss_pred eccccCCCChhhHhc----ccceEEEecCCcchH----HHHHHHh----------ccCCCcccccCcHHHHhhccC----
Q psy8846 417 PAAVEKVITKNNAHK----IQAKIIAEAANESVQ----ESLERRF----------GNVGGRIPVTPSESFQKRISG---- 474 (568)
Q Consensus 417 PaAl~~~It~~na~~----i~AkiIvE~AN~~~~----~~l~~~l----------~~~GggI~vvPde~~q~~~~~---- 474 (568)
++...+.=+.+-+.. ++...-|=-||-.+- ..|.+.. +.-|+||+|+-- .++...+
T Consensus 84 e~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI~~--lr~~l~g~~I~ 161 (333)
T COG0460 84 ELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIPIIKL--LRELLAGDEIL 161 (333)
T ss_pred ecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcchHHH--HHhhcccCceE
Confidence 998775555542333 345444557885531 1222221 233456765532 2222111
Q ss_pred ------CCcHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy8846 475 ------ASEKDIVHSGLDYTMERSARAIMKTAMKYNL 505 (568)
Q Consensus 475 ------~we~e~V~~~L~~~M~~a~~~V~~~a~~~~~ 505 (568)
--+-..+..++++... +|.++++.|++.++
T Consensus 162 ~i~GIlNGT~NyIlt~m~~~~~-~f~dal~eAq~lGy 197 (333)
T COG0460 162 SIRGILNGTTNYILTRMEEGGL-SFEDALAEAQELGY 197 (333)
T ss_pred EEEEEEeccHHHHHHHHHccCC-CHHHHHHHHHHcCC
Confidence 1255567777776544 69999999999764
No 36
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=84.54 E-value=1.6 Score=42.25 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=47.1
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeecccc-CCCChhhHhc
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVE-KVITKNNAHK 431 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~-~~It~~na~~ 431 (568)
|+||+.+|+.|...||+|+. ..+|+-...+.... +| +..+-++.+ ..+||++-|... ++|+.+-..+
T Consensus 32 G~vG~g~A~~lr~~Ga~V~V---~e~DPi~alqA~~d-----Gf---~v~~~~~a~-~~adi~vtaTG~~~vi~~e~~~~ 99 (162)
T PF00670_consen 32 GKVGKGIARALRGLGARVTV---TEIDPIRALQAAMD-----GF---EVMTLEEAL-RDADIFVTATGNKDVITGEHFRQ 99 (162)
T ss_dssp SHHHHHHHHHHHHTT-EEEE---E-SSHHHHHHHHHT-----T----EEE-HHHHT-TT-SEEEE-SSSSSSB-HHHHHH
T ss_pred CcccHHHHHHHhhCCCEEEE---EECChHHHHHhhhc-----Cc---EecCHHHHH-hhCCEEEECCCCccccCHHHHHH
Confidence 99999999999999999977 56788766655443 23 222223333 478999987553 5789999999
Q ss_pred ccceEEE
Q psy8846 432 IQAKIIA 438 (568)
Q Consensus 432 i~AkiIv 438 (568)
+|=..|+
T Consensus 100 mkdgail 106 (162)
T PF00670_consen 100 MKDGAIL 106 (162)
T ss_dssp S-TTEEE
T ss_pred hcCCeEE
Confidence 9854443
No 37
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=82.25 E-value=1.5 Score=40.65 Aligned_cols=64 Identities=16% Similarity=0.206 Sum_probs=37.3
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccccCCCC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVIT 425 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~~It 425 (568)
|+||.++++.|.+.|..|++|... +.....+.... +++....+.++++ .++|+++-|.-.+.|.
T Consensus 19 GrVG~~La~aL~~ag~~v~~v~sr--s~~sa~~a~~~------~~~~~~~~~~~~~-~~aDlv~iavpDdaI~ 82 (127)
T PF10727_consen 19 GRVGTALARALARAGHEVVGVYSR--SPASAERAAAF------IGAGAILDLEEIL-RDADLVFIAVPDDAIA 82 (127)
T ss_dssp SCCCCHHHHHHHHTTSEEEEESSC--HH-HHHHHHC--------TT-----TTGGG-CC-SEEEE-S-CCHHH
T ss_pred CHHHHHHHHHHHHCCCeEEEEEeC--Ccccccccccc------ccccccccccccc-ccCCEEEEEechHHHH
Confidence 999999999999999999998643 23222222222 2233333444554 4899999987666553
No 38
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=81.55 E-value=6.8 Score=43.26 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=64.1
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCccc--ccceEEeec--cccCCCChhh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMY--EPCDIFVPA--AVEKVITKNN 428 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~--~~cDIliPa--Al~~~It~~n 428 (568)
|.+|.-+|++|++.|.+-|.|.-. ..++..+..++.| ++.++-+++.+ .++||+|-| |...+|+.++
T Consensus 187 Gem~~lva~~L~~~g~~~i~IaNR--T~erA~~La~~~~-------~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ 257 (414)
T COG0373 187 GEMGELVAKHLAEKGVKKITIANR--TLERAEELAKKLG-------AEAVALEELLEALAEADVVISSTSAPHPIITREM 257 (414)
T ss_pred cHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHHhC-------CeeecHHHHHHhhhhCCEEEEecCCCccccCHHH
Confidence 999999999999999877777644 5566666666653 55555444433 589999988 7889999999
Q ss_pred Hhcccc----eEEEecCCcch
Q psy8846 429 AHKIQA----KIIAEAANESV 445 (568)
Q Consensus 429 a~~i~A----kiIvE~AN~~~ 445 (568)
....-. .+|++-||+.-
T Consensus 258 ve~a~~~r~~~livDiavPRd 278 (414)
T COG0373 258 VERALKIRKRLLIVDIAVPRD 278 (414)
T ss_pred HHHHHhcccCeEEEEecCCCC
Confidence 887633 29999999874
No 39
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=80.66 E-value=3.1 Score=40.01 Aligned_cols=90 Identities=11% Similarity=0.090 Sum_probs=56.9
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccc-----cCCCChh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAV-----EKVITKN 427 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl-----~~~It~~ 427 (568)
|++|+.+|+.|...|++|++..-+.-+.+ .. .. .+.+..+-++++. .|||++-+.= .+.|+++
T Consensus 45 G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~-~~-------~~~~~~~l~ell~-~aDiv~~~~plt~~T~~li~~~ 112 (178)
T PF02826_consen 45 GRIGRAVARRLKAFGMRVIGYDRSPKPEE---GA-DE-------FGVEYVSLDELLA-QADIVSLHLPLTPETRGLINAE 112 (178)
T ss_dssp SHHHHHHHHHHHHTT-EEEEEESSCHHHH---HH-HH-------TTEEESSHHHHHH-H-SEEEE-SSSSTTTTTSBSHH
T ss_pred cCCcCeEeeeeecCCceeEEecccCChhh---hc-cc-------ccceeeehhhhcc-hhhhhhhhhccccccceeeeee
Confidence 99999999999999999999654322111 11 11 1233333345553 6999988764 5788888
Q ss_pred hHhccc-ceEEEecCCcch-H-HHHHHHhc
Q psy8846 428 NAHKIQ-AKIIAEAANESV-Q-ESLERRFG 454 (568)
Q Consensus 428 na~~i~-AkiIvE~AN~~~-~-~~l~~~l~ 454 (568)
...+++ -.+++.-|-+++ + +.|.+.|.
T Consensus 113 ~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 113 FLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp HHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred eeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 888887 348888888875 2 33554443
No 40
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=77.91 E-value=5.2 Score=41.36 Aligned_cols=102 Identities=14% Similarity=0.128 Sum_probs=61.3
Q ss_pred cCHHHHHHHHHHHCCC----eEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecC-CCCcccccceEEeeccccCCCCh-
Q psy8846 353 GPVSMYLPQIWVQEKG----KCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYE-GENLMYEPCDIFVPAAVEKVITK- 426 (568)
Q Consensus 353 GnVG~~~A~~L~~~Ga----kvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~-~~~ll~~~cDIliPaAl~~~It~- 426 (568)
||+|+++++.|.+.|. .|++ +| .+.+.+....++.| .+..+ +.++. .+|||++-|--...+.+
T Consensus 11 G~MG~aia~~L~~~g~~~~~~I~v-~~--r~~~~~~~l~~~~g-------~~~~~~~~e~~-~~aDiIiLavkP~~~~~v 79 (272)
T PRK12491 11 GNMGIAMIGGMINKNIVSPDQIIC-SD--LNVSNLKNASDKYG-------ITITTNNNEVA-NSADILILSIKPDLYSSV 79 (272)
T ss_pred cHHHHHHHHHHHHCCCCCCceEEE-EC--CCHHHHHHHHHhcC-------cEEeCCcHHHH-hhCCEEEEEeChHHHHHH
Confidence 9999999999999884 3444 33 46777766655443 23332 33443 58999998866543322
Q ss_pred --hhHhcccc-eEEEecCCcchHHHHHHHhccCCCcccccCc
Q psy8846 427 --NNAHKIQA-KIIAEAANESVQESLERRFGNVGGRIPVTPS 465 (568)
Q Consensus 427 --~na~~i~A-kiIvE~AN~~~~~~l~~~l~~~GggI~vvPd 465 (568)
+..+.++. ++|+.-+-+--.+.|++.+...-.-|.++|.
T Consensus 80 l~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN 121 (272)
T PRK12491 80 INQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPN 121 (272)
T ss_pred HHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCC
Confidence 22233443 4778777765556666665431113556676
No 41
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=77.26 E-value=3.1 Score=46.69 Aligned_cols=79 Identities=19% Similarity=0.226 Sum_probs=52.4
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccc-cCCCChhhHhc
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAV-EKVITKNNAHK 431 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl-~~~It~~na~~ 431 (568)
|++|..+|+.|...|++|+++ ..|+......... |++.++-++++ ..|||++.|.. .++|+.+....
T Consensus 263 G~IGr~vA~rL~a~Ga~ViV~---e~dp~~a~~A~~~--------G~~~~~leell-~~ADIVI~atGt~~iI~~e~~~~ 330 (476)
T PTZ00075 263 GDVGKGCAQALRGFGARVVVT---EIDPICALQAAME--------GYQVVTLEDVV-ETADIFVTATGNKDIITLEHMRR 330 (476)
T ss_pred CHHHHHHHHHHHHCCCEEEEE---eCCchhHHHHHhc--------CceeccHHHHH-hcCCEEEECCCcccccCHHHHhc
Confidence 999999999999999997763 3344443222221 33433334444 47999999864 46889888888
Q ss_pred ccc-eEEEecCCc
Q psy8846 432 IQA-KIIAEAANE 443 (568)
Q Consensus 432 i~A-kiIvE~AN~ 443 (568)
++- -+|+..+-.
T Consensus 331 MKpGAiLINvGr~ 343 (476)
T PTZ00075 331 MKNNAIVGNIGHF 343 (476)
T ss_pred cCCCcEEEEcCCC
Confidence 874 355555444
No 42
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=76.44 E-value=2.5 Score=46.70 Aligned_cols=77 Identities=23% Similarity=0.209 Sum_probs=49.8
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccc-cCCCChhhHhc
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAV-EKVITKNNAHK 431 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl-~~~It~~na~~ 431 (568)
|++|..+|+.|...|++|++ .++|..+..+.... |.+.++-++++ ..+||++.|.- .++|+.+....
T Consensus 221 G~IG~~vA~~lr~~Ga~ViV---~d~dp~ra~~A~~~--------G~~v~~l~eal-~~aDVVI~aTG~~~vI~~~~~~~ 288 (425)
T PRK05476 221 GDVGKGCAQRLRGLGARVIV---TEVDPICALQAAMD--------GFRVMTMEEAA-ELGDIFVTATGNKDVITAEHMEA 288 (425)
T ss_pred CHHHHHHHHHHHhCCCEEEE---EcCCchhhHHHHhc--------CCEecCHHHHH-hCCCEEEECCCCHHHHHHHHHhc
Confidence 99999999999999999777 34566554333221 22222323444 37999999863 45677777777
Q ss_pred ccc-eEEEecC
Q psy8846 432 IQA-KIIAEAA 441 (568)
Q Consensus 432 i~A-kiIvE~A 441 (568)
++. .+++.++
T Consensus 289 mK~GailiNvG 299 (425)
T PRK05476 289 MKDGAILANIG 299 (425)
T ss_pred CCCCCEEEEcC
Confidence 764 3444443
No 43
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=75.75 E-value=7.1 Score=35.90 Aligned_cols=86 Identities=16% Similarity=0.150 Sum_probs=59.1
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcc--cccceEEeecccc--CCCChhh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLM--YEPCDIFVPAAVE--KVITKNN 428 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll--~~~cDIliPaAl~--~~It~~n 428 (568)
|.+|+.++..|++.|++-|.|... +.+++.+..++.+. ...+.++-+++. -.++||+|=|.-. ..|+++.
T Consensus 21 Gg~ar~v~~~L~~~g~~~i~i~nR--t~~ra~~l~~~~~~----~~~~~~~~~~~~~~~~~~DivI~aT~~~~~~i~~~~ 94 (135)
T PF01488_consen 21 GGAARAVAAALAALGAKEITIVNR--TPERAEALAEEFGG----VNIEAIPLEDLEEALQEADIVINATPSGMPIITEEM 94 (135)
T ss_dssp SHHHHHHHHHHHHTTSSEEEEEES--SHHHHHHHHHHHTG----CSEEEEEGGGHCHHHHTESEEEE-SSTTSTSSTHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEC--CHHHHHHHHHHcCc----cccceeeHHHHHHHHhhCCeEEEecCCCCcccCHHH
Confidence 899999999999999995555544 77777777666411 122333333443 4589999988654 4899999
Q ss_pred Hhcccc--eEEEecCCcc
Q psy8846 429 AHKIQA--KIIAEAANES 444 (568)
Q Consensus 429 a~~i~A--kiIvE~AN~~ 444 (568)
...... ++|++-|+++
T Consensus 95 ~~~~~~~~~~v~Dla~Pr 112 (135)
T PF01488_consen 95 LKKASKKLRLVIDLAVPR 112 (135)
T ss_dssp HTTTCHHCSEEEES-SS-
T ss_pred HHHHHhhhhceeccccCC
Confidence 888875 7999999854
No 44
>KOG0409|consensus
Probab=75.65 E-value=3.1 Score=44.03 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=43.3
Q ss_pred eec-cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeec
Q psy8846 350 FSS-GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPA 418 (568)
Q Consensus 350 ~~~-GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPa 418 (568)
|+. ||.|++.+..|...|.+|++ .+.+.+...++.++.+++.+= |.| +..+|||+|-|
T Consensus 40 FIGLG~MG~~M~~nLik~G~kVtV---~dr~~~k~~~f~~~Ga~v~~s-------Pae-Vae~sDvvitm 98 (327)
T KOG0409|consen 40 FIGLGNMGSAMVSNLIKAGYKVTV---YDRTKDKCKEFQEAGARVANS-------PAE-VAEDSDVVITM 98 (327)
T ss_pred EEeeccchHHHHHHHHHcCCEEEE---EeCcHHHHHHHHHhchhhhCC-------HHH-HHhhcCEEEEE
Confidence 444 99999999999999999988 778899998888875554432 222 33567777655
No 45
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=74.65 E-value=5.4 Score=42.80 Aligned_cols=76 Identities=18% Similarity=0.123 Sum_probs=48.6
Q ss_pred cCHHHHHHHHHHH-CCCeEeEeCCCCCCHHHHHHHHHhcC--CcccCCCC-e-------ec--CCCCcccccceEEeecc
Q psy8846 353 GPVSMYLPQIWVQ-EKGKCPGLPTHTRKPLALEEYKLDNG--TIVGFPGA-V-------PY--EGENLMYEPCDIFVPAA 419 (568)
Q Consensus 353 GnVG~~~A~~L~~-~GakvvaVsD~GiD~~~L~~~~~~~g--~v~~~~ga-~-------~i--~~~~ll~~~cDIliPaA 419 (568)
|..|..+++.+.+ .+.++|||+| .|++.......+.| +...+++. . .+ +.++++ .+||+++.|.
T Consensus 7 GrIGr~varav~~~~d~elVaVnD--~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl-~~vDiVve~T 83 (333)
T TIGR01546 7 GTIGKRVADAVTKQDDMKLVGVTK--TSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLL-EKVDIVVDAT 83 (333)
T ss_pred cHHHHHHHHHHhhCCCcEEEEEec--CChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHh-hcCCEEEECC
Confidence 8999999999865 5799999999 46654333333222 22222221 1 11 134565 5799999995
Q ss_pred ccCCCChhhHhcc
Q psy8846 420 VEKVITKNNAHKI 432 (568)
Q Consensus 420 l~~~It~~na~~i 432 (568)
+...+..|+...
T Consensus 84 -p~~~~~~na~~~ 95 (333)
T TIGR01546 84 -PGGIGAKNKPLY 95 (333)
T ss_pred -CCCCChhhHHHH
Confidence 777788887755
No 46
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=72.25 E-value=5.7 Score=41.51 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=55.3
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCc--ccccceEEeeccccCCCChhhHh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENL--MYEPCDIFVPAAVEKVITKNNAH 430 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~l--l~~~cDIliPaAl~~~It~~na~ 430 (568)
|.+|..+|+.|...|++|+.+. -+.+++.+.... +.+.++.+++ +-.++||++-|.-...++.+..+
T Consensus 160 G~iG~avA~~L~~~G~~V~v~~---R~~~~~~~~~~~--------g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l~ 228 (287)
T TIGR02853 160 GRTGMTIARTFSALGARVFVGA---RSSADLARITEM--------GLIPFPLNKLEEKVAEIDIVINTIPALVLTADVLS 228 (287)
T ss_pred hHHHHHHHHHHHHCCCEEEEEe---CCHHHHHHHHHC--------CCeeecHHHHHHHhccCCEEEECCChHHhCHHHHh
Confidence 9999999999999999887633 244444433221 2233322222 22489999998766778888877
Q ss_pred ccc-ceEEEecCCcch
Q psy8846 431 KIQ-AKIIAEAANESV 445 (568)
Q Consensus 431 ~i~-AkiIvE~AN~~~ 445 (568)
.++ -.+|++-|..|.
T Consensus 229 ~~k~~aliIDlas~Pg 244 (287)
T TIGR02853 229 KLPKHAVIIDLASKPG 244 (287)
T ss_pred cCCCCeEEEEeCcCCC
Confidence 775 468888888774
No 47
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=70.88 E-value=7.3 Score=43.69 Aligned_cols=147 Identities=16% Similarity=0.082 Sum_probs=85.3
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeec-CCCCcccc--cceEEeeccccCCCChhh-
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPY-EGENLMYE--PCDIFVPAAVEKVITKNN- 428 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i-~~~~ll~~--~cDIliPaAl~~~It~~n- 428 (568)
|+.|+.+|+.|.+.|.+|.+ .+.+.+...++.+..+. .++. .+.. +.+++... +||+++-|...+....+.
T Consensus 10 G~MG~~lA~nL~~~G~~V~v---~dr~~~~~~~l~~~~~~-~g~~-i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi 84 (470)
T PTZ00142 10 AVMGQNLALNIASRGFKISV---YNRTYEKTEEFVKKAKE-GNTR-VKGYHTLEELVNSLKKPRKVILLIKAGEAVDETI 84 (470)
T ss_pred hHHHHHHHHHHHHCCCeEEE---EeCCHHHHHHHHHhhhh-cCCc-ceecCCHHHHHhcCCCCCEEEEEeCChHHHHHHH
Confidence 99999999999999999887 56788887776553110 0110 1111 23344432 689777775555444444
Q ss_pred ---Hhccc-ceEEEecCCcchH--HHHHHHhccCCC----------------cccccCc---HHH-------Hhhc-c--
Q psy8846 429 ---AHKIQ-AKIIAEAANESVQ--ESLERRFGNVGG----------------RIPVTPS---ESF-------QKRI-S-- 473 (568)
Q Consensus 429 ---a~~i~-AkiIvE~AN~~~~--~~l~~~l~~~Gg----------------gI~vvPd---e~~-------q~~~-~-- 473 (568)
++.+. -++|+++.|.... ..+.+.+...|. |-.+.|. +-+ +... .
T Consensus 85 ~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~~a~~~~~piL~~ia~~~~ 164 (470)
T PTZ00142 85 DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKCSAKVG 164 (470)
T ss_pred HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhcC
Confidence 44443 5899999996532 223333333321 0011111 111 1110 0
Q ss_pred ----CC--------CcHHHHHHHHHHHHHHHHHHHHHHHH-hcc
Q psy8846 474 ----GA--------SEKDIVHSGLDYTMERSARAIMKTAM-KYN 504 (568)
Q Consensus 474 ----~~--------we~e~V~~~L~~~M~~a~~~V~~~a~-~~~ 504 (568)
.+ .--..|++.++..|-.++.+.+..++ ..+
T Consensus 165 ~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~g 208 (470)
T PTZ00142 165 DSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILG 208 (470)
T ss_pred CCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 01 13366899999999999999999997 455
No 48
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=69.72 E-value=15 Score=33.57 Aligned_cols=106 Identities=8% Similarity=0.083 Sum_probs=58.3
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccccCCCChhhH---
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNA--- 429 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~~It~~na--- 429 (568)
|++|..+++.|.+.|+..|.+.|. +.+.+.+..++.+.- .. .....+.++. -.++|+++-|.-....+.++.
T Consensus 28 G~~g~~~a~~l~~~g~~~v~v~~r--~~~~~~~~~~~~~~~-~~-~~~~~~~~~~-~~~~Dvvi~~~~~~~~~~~~~~~~ 102 (155)
T cd01065 28 GGAARAVAYALAELGAAKIVIVNR--TLEKAKALAERFGEL-GI-AIAYLDLEEL-LAEADLIINTTPVGMKPGDELPLP 102 (155)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEcC--CHHHHHHHHHHHhhc-cc-ceeecchhhc-cccCCEEEeCcCCCCCCCCCCCCC
Confidence 999999999999997444444444 666666555443210 00 0011122232 358999999976665411111
Q ss_pred -hcc-cceEEEecCCcchHHHHHHHhccCCCcccccCc
Q psy8846 430 -HKI-QAKIIAEAANESVQESLERRFGNVGGRIPVTPS 465 (568)
Q Consensus 430 -~~i-~AkiIvE~AN~~~~~~l~~~l~~~GggI~vvPd 465 (568)
..+ .-++|++-+-.|....+.+.+.++| +.++|-
T Consensus 103 ~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g--~~~v~g 138 (155)
T cd01065 103 PSLLKPGGVVYDVVYNPLETPLLKEARALG--AKTIDG 138 (155)
T ss_pred HHHcCCCCEEEEcCcCCCCCHHHHHHHHCC--CceeCC
Confidence 112 3467777765554334545455554 566665
No 49
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=69.40 E-value=19 Score=39.65 Aligned_cols=87 Identities=15% Similarity=0.184 Sum_probs=54.9
Q ss_pred cCHHHHHHHHHHHCCC-eEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcc--cccceEEeecc--ccCCCChh
Q psy8846 353 GPVSMYLPQIWVQEKG-KCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLM--YEPCDIFVPAA--VEKVITKN 427 (568)
Q Consensus 353 GnVG~~~A~~L~~~Ga-kvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll--~~~cDIliPaA--l~~~It~~ 427 (568)
|.+|..+++.|...|+ +|+. .+ -+.++..+..++.|. ..++.+++. -..|||++-|. -...|+.+
T Consensus 189 G~iG~~~a~~L~~~G~~~V~v-~~--rs~~ra~~la~~~g~-------~~i~~~~l~~~l~~aDvVi~aT~s~~~ii~~e 258 (417)
T TIGR01035 189 GEMGELVAKHLLRKGVGKILI-AN--RTYERAEDLAKELGG-------EAVKFEDLEEYLAEADIVISSTGAPHPIVSKE 258 (417)
T ss_pred hHHHHHHHHHHHHCCCCEEEE-Ee--CCHHHHHHHHHHcCC-------eEeeHHHHHHHHhhCCEEEECCCCCCceEcHH
Confidence 9999999999999994 5554 33 355665555554321 122211211 13799999995 45678888
Q ss_pred hHhccc-----ceEEEecCCcc-hHHHH
Q psy8846 428 NAHKIQ-----AKIIAEAANES-VQESL 449 (568)
Q Consensus 428 na~~i~-----AkiIvE~AN~~-~~~~l 449 (568)
...... ..+|++.|++. +++.+
T Consensus 259 ~l~~~~~~~~~~~~viDla~Prdid~~v 286 (417)
T TIGR01035 259 DVERALRERTRPLFIIDIAVPRDVDPAV 286 (417)
T ss_pred HHHHHHhcCCCCeEEEEeCCCCCCChhh
Confidence 776542 34999999854 45443
No 50
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=65.46 E-value=11 Score=42.34 Aligned_cols=147 Identities=14% Similarity=0.115 Sum_probs=83.9
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCccc--ccceEEeeccccCCCChhhH-
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMY--EPCDIFVPAAVEKVITKNNA- 429 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~--~~cDIliPaAl~~~It~~na- 429 (568)
|+.|..+|+.|.+.|.+|++ .+.+.+++.+..++++.-.+...+. +.+++.. .+||+++-|...+....+.+
T Consensus 8 G~MG~~mA~nL~~~G~~V~v---~drt~~~~~~l~~~~~~g~~~~~~~--s~~e~v~~l~~~dvIil~v~~~~~v~~Vi~ 82 (467)
T TIGR00873 8 AVMGSNLALNMADHGFTVSV---YNRTPEKTDEFLAEHAKGKKIVGAY--SIEEFVQSLERPRKIMLMVKAGAPVDAVIN 82 (467)
T ss_pred HHHHHHHHHHHHhcCCeEEE---EeCCHHHHHHHHhhccCCCCceecC--CHHHHHhhcCCCCEEEEECCCcHHHHHHHH
Confidence 99999999999999999887 5668888877765421100011111 1223332 26898887765544444443
Q ss_pred ---hcc-cceEEEecCCcc-hH-HHHHHHhccCCC----------------cccccCc---HHH-------Hhhcc----
Q psy8846 430 ---HKI-QAKIIAEAANES-VQ-ESLERRFGNVGG----------------RIPVTPS---ESF-------QKRIS---- 473 (568)
Q Consensus 430 ---~~i-~AkiIvE~AN~~-~~-~~l~~~l~~~Gg----------------gI~vvPd---e~~-------q~~~~---- 473 (568)
+.+ .-++|+++.|.. .+ ....+.+...|. |-.+.+. +.+ +....
T Consensus 83 ~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG~~~a~~~~~p~L~~ia~~~~~ 162 (467)
T TIGR00873 83 QLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAAKVDG 162 (467)
T ss_pred HHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhhhcCC
Confidence 333 347999999944 22 222223333220 0011111 111 11100
Q ss_pred ---CC--------CcHHHHHHHHHHHHHHHHHHHHHHHH-hcc
Q psy8846 474 ---GA--------SEKDIVHSGLDYTMERSARAIMKTAM-KYN 504 (568)
Q Consensus 474 ---~~--------we~e~V~~~L~~~M~~a~~~V~~~a~-~~~ 504 (568)
.+ .--..|++.++..|..++.+.+..++ +.+
T Consensus 163 ~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g 205 (467)
T TIGR00873 163 EPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLG 205 (467)
T ss_pred CCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 01 23456899999999999999999875 466
No 51
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=64.80 E-value=6.2 Score=43.55 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=46.4
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccc-cCCCChhhHhc
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAV-EKVITKNNAHK 431 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl-~~~It~~na~~ 431 (568)
|.+|..+|+.+...||+|++ .++|..++...+.. |++.++.++.+ ..+||++-|.- ..+|+.+-...
T Consensus 211 G~IG~~va~~ak~~Ga~ViV---~d~d~~R~~~A~~~--------G~~~~~~~e~v-~~aDVVI~atG~~~~i~~~~l~~ 278 (413)
T cd00401 211 GDVGKGCAQSLRGQGARVIV---TEVDPICALQAAME--------GYEVMTMEEAV-KEGDIFVTTTGNKDIITGEHFEQ 278 (413)
T ss_pred CHHHHHHHHHHHHCCCEEEE---EECChhhHHHHHhc--------CCEEccHHHHH-cCCCEEEECCCCHHHHHHHHHhc
Confidence 99999999999999999877 35677666554432 33333333433 36899999864 34566555555
Q ss_pred cc
Q psy8846 432 IQ 433 (568)
Q Consensus 432 i~ 433 (568)
++
T Consensus 279 mk 280 (413)
T cd00401 279 MK 280 (413)
T ss_pred CC
Confidence 54
No 52
>PRK13243 glyoxylate reductase; Reviewed
Probab=64.43 E-value=21 Score=37.99 Aligned_cols=88 Identities=18% Similarity=0.168 Sum_probs=56.2
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccc-----cCCCChh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAV-----EKVITKN 427 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl-----~~~It~~ 427 (568)
|++|+.+|+.|...|++|++.. ..-+... .... +++..+.++++ ..|||++-|.- .+.|+++
T Consensus 159 G~IG~~vA~~l~~~G~~V~~~d-~~~~~~~----~~~~-------~~~~~~l~ell-~~aDiV~l~lP~t~~T~~~i~~~ 225 (333)
T PRK13243 159 GRIGQAVARRAKGFGMRILYYS-RTRKPEA----EKEL-------GAEYRPLEELL-RESDFVSLHVPLTKETYHMINEE 225 (333)
T ss_pred CHHHHHHHHHHHHCCCEEEEEC-CCCChhh----HHHc-------CCEecCHHHHH-hhCCEEEEeCCCChHHhhccCHH
Confidence 9999999999999999998753 3112111 1111 22333334544 47999998873 4677777
Q ss_pred hHhccc-ceEEEecCCcch--HHHHHHHh
Q psy8846 428 NAHKIQ-AKIIAEAANESV--QESLERRF 453 (568)
Q Consensus 428 na~~i~-AkiIvE~AN~~~--~~~l~~~l 453 (568)
....++ -.+++.-|-+++ .+.|.+.|
T Consensus 226 ~~~~mk~ga~lIN~aRg~~vd~~aL~~aL 254 (333)
T PRK13243 226 RLKLMKPTAILVNTARGKVVDTKALVKAL 254 (333)
T ss_pred HHhcCCCCeEEEECcCchhcCHHHHHHHH
Confidence 777775 457777777665 23455544
No 53
>PLN03139 formate dehydrogenase; Provisional
Probab=63.80 E-value=16 Score=40.04 Aligned_cols=81 Identities=16% Similarity=0.168 Sum_probs=52.6
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeec-CCCCcccccceEEeeccc-----cCCCCh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPY-EGENLMYEPCDIFVPAAV-----EKVITK 426 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i-~~~~ll~~~cDIliPaAl-----~~~It~ 426 (568)
|++|..+|+.|...|++|++..-+..+.+.. .+. +++.. +-++++ ..|||++-|.- .+.|++
T Consensus 208 G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~----~~~-------g~~~~~~l~ell-~~sDvV~l~lPlt~~T~~li~~ 275 (386)
T PLN03139 208 GRIGRLLLQRLKPFNCNLLYHDRLKMDPELE----KET-------GAKFEEDLDAML-PKCDVVVINTPLTEKTRGMFNK 275 (386)
T ss_pred cHHHHHHHHHHHHCCCEEEEECCCCcchhhH----hhc-------CceecCCHHHHH-hhCCEEEEeCCCCHHHHHHhCH
Confidence 9999999999999999998854333332221 111 33333 334555 56999997753 456666
Q ss_pred hhHhccc-ceEEEecCCcch
Q psy8846 427 NNAHKIQ-AKIIAEAANESV 445 (568)
Q Consensus 427 ~na~~i~-AkiIvE~AN~~~ 445 (568)
+....++ -.+++.-|-+++
T Consensus 276 ~~l~~mk~ga~lIN~aRG~i 295 (386)
T PLN03139 276 ERIAKMKKGVLIVNNARGAI 295 (386)
T ss_pred HHHhhCCCCeEEEECCCCch
Confidence 6666665 457777777775
No 54
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=63.24 E-value=20 Score=40.14 Aligned_cols=126 Identities=10% Similarity=0.036 Sum_probs=74.1
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcc-cccceEEeeccccCCCChhhHhc
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLM-YEPCDIFVPAAVEKVITKNNAHK 431 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll-~~~cDIliPaAl~~~It~~na~~ 431 (568)
|.+|..++..|.+.|++++.+ + -+.+++.+..++.+. ..++.+++- -.++||+|=|.-.+.--.+.
T Consensus 341 GgiG~aia~~L~~~G~~V~i~-~--R~~~~~~~la~~~~~-------~~~~~~~~~~l~~~DiVInatP~g~~~~~~--- 407 (477)
T PRK09310 341 GGAAKAIATTLARAGAELLIF-N--RTKAHAEALASRCQG-------KAFPLESLPELHRIDIIINCLPPSVTIPKA--- 407 (477)
T ss_pred cHHHHHHHHHHHHCCCEEEEE-e--CCHHHHHHHHHHhcc-------ceechhHhcccCCCCEEEEcCCCCCcchhH---
Confidence 999999999999999987653 3 456666555443211 111111111 14799998886544322222
Q ss_pred ccceEEEecCCcchHHHHHHHhccCCCcccccCcH---HHHhh-ccCCCcHHHHHHHHHHHHHHHHH
Q psy8846 432 IQAKIIAEAANESVQESLERRFGNVGGRIPVTPSE---SFQKR-ISGASEKDIVHSGLDYTMERSAR 494 (568)
Q Consensus 432 i~AkiIvE~AN~~~~~~l~~~l~~~GggI~vvPde---~~q~~-~~~~we~e~V~~~L~~~M~~a~~ 494 (568)
+ .++|++-.-+|....+-+..+.+| +.++.-. ..|.. +-..|+..+..++|+.+.++-..
T Consensus 408 l-~~~v~D~~Y~P~~T~ll~~A~~~G--~~~~~G~~Ml~~Qa~~~f~lw~g~~~~~~~~~~~~~~~~ 471 (477)
T PRK09310 408 F-PPCVVDINTLPKHSPYTQYARSQG--SSIIYGYEMFAEQALLQFRLWFPTLLFKHLEKTFRRRVA 471 (477)
T ss_pred H-hhhEEeccCCCCCCHHHHHHHHCc--CEEECcHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence 2 258999988885433434334554 5555552 22443 33468877788888887776443
No 55
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=62.06 E-value=14 Score=37.92 Aligned_cols=101 Identities=14% Similarity=0.159 Sum_probs=61.3
Q ss_pred cCHHHHHHHHHHHC--CCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeec-CCCCcccccceEEeeccccCCCChhhH
Q psy8846 353 GPVSMYLPQIWVQE--KGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPY-EGENLMYEPCDIFVPAAVEKVITKNNA 429 (568)
Q Consensus 353 GnVG~~~A~~L~~~--GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i-~~~~ll~~~cDIliPaAl~~~It~~na 429 (568)
|++|...++.|.+. +.++++|.|. +.++..+..+.. +...+ +.++++ .++|+++=|+-.... .+.+
T Consensus 10 G~iG~~ia~~l~~~~~~~elv~v~d~--~~~~a~~~a~~~-------~~~~~~~~~ell-~~~DvVvi~a~~~~~-~~~~ 78 (265)
T PRK13304 10 GAIASLITKAILSGRINAELYAFYDR--NLEKAENLASKT-------GAKACLSIDELV-EDVDLVVECASVNAV-EEVV 78 (265)
T ss_pred cHHHHHHHHHHHcCCCCeEEEEEECC--CHHHHHHHHHhc-------CCeeECCHHHHh-cCCCEEEEcCChHHH-HHHH
Confidence 99999999998875 5889999876 555655554443 22223 235666 689999999865443 3443
Q ss_pred hc-cc--ceEEEecC----CcchHHHHHHHhccCCCcccccCc
Q psy8846 430 HK-IQ--AKIIAEAA----NESVQESLERRFGNVGGRIPVTPS 465 (568)
Q Consensus 430 ~~-i~--AkiIvE~A----N~~~~~~l~~~l~~~GggI~vvPd 465 (568)
.. ++ .-+|++.. +.+..+.|.+...+.|. .+.+|.
T Consensus 79 ~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~-~l~v~s 120 (265)
T PRK13304 79 PKSLENGKDVIIMSVGALADKELFLKLYKLAKENNC-KIYLPS 120 (265)
T ss_pred HHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCC-EEEEeC
Confidence 32 23 45666532 44444455555455553 444555
No 56
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=61.89 E-value=21 Score=37.20 Aligned_cols=146 Identities=7% Similarity=0.111 Sum_probs=81.9
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecC-CCCcccccceEEeeccccCCCChhh---
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYE-GENLMYEPCDIFVPAAVEKVITKNN--- 428 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~-~~~ll~~~cDIliPaAl~~~It~~n--- 428 (568)
|++|..+|+.|.+.|.+|++ .+.+.+++.+..+. ++...+ +.++ -.+|||++-|.-......+-
T Consensus 10 G~mG~~mA~~l~~~G~~V~v---~d~~~~~~~~~~~~--------g~~~~~s~~~~-~~~aDvVi~~vp~~~~~~~vl~~ 77 (296)
T PRK15461 10 GQMGSPMASNLLKQGHQLQV---FDVNPQAVDALVDK--------GATPAASPAQA-AAGAEFVITMLPNGDLVRSVLFG 77 (296)
T ss_pred CHHHHHHHHHHHHCCCeEEE---EcCCHHHHHHHHHc--------CCcccCCHHHH-HhcCCEEEEecCCHHHHHHHHcC
Confidence 99999999999999998876 35677777665543 222222 2233 35899999885544221111
Q ss_pred ----Hhcc-cceEEEecCCcch--HHHHHHHhccCCCc-----------------ccc-c--CcHHH---Hhh---ccC-
Q psy8846 429 ----AHKI-QAKIIAEAANESV--QESLERRFGNVGGR-----------------IPV-T--PSESF---QKR---ISG- 474 (568)
Q Consensus 429 ----a~~i-~AkiIvE~AN~~~--~~~l~~~l~~~Ggg-----------------I~v-v--Pde~~---q~~---~~~- 474 (568)
.+.+ +-++|++-+..+. ...+.+.+.++|.. ..+ + +++.+ +.. ++.
T Consensus 78 ~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~ 157 (296)
T PRK15461 78 ENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNE 157 (296)
T ss_pred cccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCC
Confidence 2233 3567887777553 23444444444311 000 0 11111 111 110
Q ss_pred -C--------CcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhh
Q psy8846 475 -A--------SEKDIVHSGLDYTMERSARAIMKTAMKYNLGHLDINAH 513 (568)
Q Consensus 475 -~--------we~e~V~~~L~~~M~~a~~~V~~~a~~~~~~~~dlR~A 513 (568)
+ .....+++-+...+..++.+.+..+++.+ +|+.+.
T Consensus 158 ~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G---ld~~~~ 202 (296)
T PRK15461 158 LINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALG---LSFDVA 202 (296)
T ss_pred eEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCHHHH
Confidence 1 12334555566666677788888999988 677664
No 57
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=61.84 E-value=31 Score=37.90 Aligned_cols=86 Identities=12% Similarity=0.159 Sum_probs=56.1
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCC---CcccccceEEeeccc--cCCCChh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGE---NLMYEPCDIFVPAAV--EKVITKN 427 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~---~ll~~~cDIliPaAl--~~~It~~ 427 (568)
|.+|..+++.|...|++-|.|+ +.+.++..+...+.|. +.++.+ +.+ .++||+|-|.. ...|+.+
T Consensus 191 G~iG~~~a~~L~~~G~~~V~v~--~r~~~ra~~la~~~g~-------~~~~~~~~~~~l-~~aDvVI~aT~s~~~~i~~~ 260 (423)
T PRK00045 191 GEMGELVAKHLAEKGVRKITVA--NRTLERAEELAEEFGG-------EAIPLDELPEAL-AEADIVISSTGAPHPIIGKG 260 (423)
T ss_pred hHHHHHHHHHHHHCCCCeEEEE--eCCHHHHHHHHHHcCC-------cEeeHHHHHHHh-ccCCEEEECCCCCCcEEcHH
Confidence 9999999999999998544444 3466666666555431 112111 222 37999999854 4578888
Q ss_pred hHhcc------cceEEEecCCcc-hHHH
Q psy8846 428 NAHKI------QAKIIAEAANES-VQES 448 (568)
Q Consensus 428 na~~i------~AkiIvE~AN~~-~~~~ 448 (568)
..... +-.+|++.|++. +++.
T Consensus 261 ~l~~~~~~~~~~~~vviDla~Prdid~~ 288 (423)
T PRK00045 261 MVERALKARRHRPLLLVDLAVPRDIEPE 288 (423)
T ss_pred HHHHHHhhccCCCeEEEEeCCCCCCccc
Confidence 77653 346899999854 4443
No 58
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=61.73 E-value=14 Score=38.57 Aligned_cols=150 Identities=16% Similarity=0.185 Sum_probs=85.4
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCccc--ccceEEeeccccCCCChhh--
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMY--EPCDIFVPAAVEKVITKNN-- 428 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~--~~cDIliPaAl~~~It~~n-- 428 (568)
|+.|..+|+.|.+.|.+|++ .+.+.+.+.+..+.. +..+. +.+++.+ .+||+++-|.-.. ...+.
T Consensus 9 G~mG~~la~~L~~~g~~V~~---~dr~~~~~~~l~~~g--~~~~~-----s~~~~~~~~~~~dvIi~~vp~~-~~~~v~~ 77 (298)
T TIGR00872 9 GRMGANIVRRLAKRGHDCVG---YDHDQDAVKAMKEDR--TTGVA-----NLRELSQRLSAPRVVWVMVPHG-IVDAVLE 77 (298)
T ss_pred hHHHHHHHHHHHHCCCEEEE---EECCHHHHHHHHHcC--CcccC-----CHHHHHhhcCCCCEEEEEcCch-HHHHHHH
Confidence 99999999999999999877 456888777766532 11111 1122222 3689998774443 33333
Q ss_pred --Hhccc-ceEEEecCCcc--hHHHHHHHhccCCC----------------ccccc--Cc-HHH-------Hhhcc---C
Q psy8846 429 --AHKIQ-AKIIAEAANES--VQESLERRFGNVGG----------------RIPVT--PS-ESF-------QKRIS---G 474 (568)
Q Consensus 429 --a~~i~-AkiIvE~AN~~--~~~~l~~~l~~~Gg----------------gI~vv--Pd-e~~-------q~~~~---~ 474 (568)
++.++ -++|++..|.. .+..+.+.+.+.|. |..+. -| +.+ +.... +
T Consensus 78 ~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~~~~~~~~~~l~~~~~~~~~ 157 (298)
T TIGR00872 78 ELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVAPEEQG 157 (298)
T ss_pred HHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCHHHHHHHHHHHHHhcCcCCC
Confidence 33343 37899999964 22223333333221 11111 11 111 11110 0
Q ss_pred ---------CCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhh
Q psy8846 475 ---------ASEKDIVHSGLDYTMERSARAIMKTAMKYNLGHLDINAHA 514 (568)
Q Consensus 475 ---------~we~e~V~~~L~~~M~~a~~~V~~~a~~~~~~~~dlR~AA 514 (568)
....+.+++.|...+..++.+.+..+++.+.+ +|+.+-+
T Consensus 158 ~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~-ld~~~~~ 205 (298)
T TIGR00872 158 YLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFD-FDIPEVA 205 (298)
T ss_pred EEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-cCHHHHH
Confidence 12456688888888888999999998887432 5665554
No 59
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=59.56 E-value=27 Score=36.10 Aligned_cols=147 Identities=15% Similarity=0.067 Sum_probs=81.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeec-CCCCcccccceEEeeccccCCCChh----
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPY-EGENLMYEPCDIFVPAAVEKVITKN---- 427 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i-~~~~ll~~~cDIliPaAl~~~It~~---- 427 (568)
|++|..+|+.|.+.|.+|++ .+.+.+++.+..+. |+... +..++ -.+|||++-|--......+
T Consensus 5 G~mG~~mA~~L~~~G~~V~v---~dr~~~~~~~l~~~--------g~~~~~s~~~~-~~~advVil~vp~~~~~~~v~~g 72 (288)
T TIGR01692 5 GNMGGPMAANLLKAGHPVRV---FDLFPDAVEEAVAA--------GAQAAASPAEA-AEGADRVITMLPAGQHVISVYSG 72 (288)
T ss_pred cHhHHHHHHHHHhCCCeEEE---EeCCHHHHHHHHHc--------CCeecCCHHHH-HhcCCEEEEeCCChHHHHHHHcC
Confidence 89999999999999999877 35577776665443 22222 12233 3479999988654332222
Q ss_pred ---hHhccc-ceEEEecCCcch--HHHHHHHhccCCCcc-------------------cccCc-HHH---Hhh---cc--
Q psy8846 428 ---NAHKIQ-AKIIAEAANESV--QESLERRFGNVGGRI-------------------PVTPS-ESF---QKR---IS-- 473 (568)
Q Consensus 428 ---na~~i~-AkiIvE~AN~~~--~~~l~~~l~~~GggI-------------------~vvPd-e~~---q~~---~~-- 473 (568)
-++.++ -++|++..+... ...+.+.+.++|... .+-.+ +.+ +.. ++
T Consensus 73 ~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~ 152 (288)
T TIGR01692 73 DEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRN 152 (288)
T ss_pred cchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCC
Confidence 223343 367777776443 233444444443110 01111 111 111 11
Q ss_pred ----CC----CcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhh
Q psy8846 474 ----GA----SEKDIVHSGLDYTMERSARAIMKTAMKYNLGHLDINAHA 514 (568)
Q Consensus 474 ----~~----we~e~V~~~L~~~M~~a~~~V~~~a~~~~~~~~dlR~AA 514 (568)
+. .-...+++-+......++.+.+..+++++ +|..+..
T Consensus 153 ~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G---ld~~~~~ 198 (288)
T TIGR01692 153 IVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLG---LDPKVLF 198 (288)
T ss_pred eEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCHHHHH
Confidence 11 11224555566666667888899999998 6776543
No 60
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=59.40 E-value=46 Score=35.60 Aligned_cols=87 Identities=21% Similarity=0.264 Sum_probs=56.3
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecC-CCCcccccceEEeecc-----ccCCCCh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYE-GENLMYEPCDIFVPAA-----VEKVITK 426 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~-~~~ll~~~cDIliPaA-----l~~~It~ 426 (568)
|++|+.+|+.|...|.+|++.+=. .... ..++.+...++ -+++| ..|||++-.. ..+.|++
T Consensus 151 G~IG~~va~~l~afgm~v~~~d~~--~~~~----------~~~~~~~~~~~~Ld~lL-~~sDiv~lh~PlT~eT~g~i~~ 217 (324)
T COG0111 151 GRIGRAVAKRLKAFGMKVIGYDPY--SPRE----------RAGVDGVVGVDSLDELL-AEADILTLHLPLTPETRGLINA 217 (324)
T ss_pred CHHHHHHHHHHHhCCCeEEEECCC--Cchh----------hhccccceecccHHHHH-hhCCEEEEcCCCCcchhcccCH
Confidence 999999999999999999994421 0000 11112222222 23444 5788887664 4678888
Q ss_pred hhHhccc--ceEEEecCCcch--HHHHHHHh
Q psy8846 427 NNAHKIQ--AKIIAEAANESV--QESLERRF 453 (568)
Q Consensus 427 ~na~~i~--AkiIvE~AN~~~--~~~l~~~l 453 (568)
+...++| | +++..|-+++ .+.|-+.|
T Consensus 218 ~~~a~MK~ga-ilIN~aRG~vVde~aL~~AL 247 (324)
T COG0111 218 EELAKMKPGA-ILINAARGGVVDEDALLAAL 247 (324)
T ss_pred HHHhhCCCCe-EEEECCCcceecHHHHHHHH
Confidence 8888886 5 8888888885 23344443
No 61
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=59.31 E-value=26 Score=36.02 Aligned_cols=147 Identities=13% Similarity=0.107 Sum_probs=80.3
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecC-CCCcccccceEEeeccccCCCChhh---
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYE-GENLMYEPCDIFVPAAVEKVITKNN--- 428 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~-~~~ll~~~cDIliPaAl~~~It~~n--- 428 (568)
|++|..+|+.|.+.|.+|++ .+.+.+.+.+.... |+...+ .++++ .+||+++-|.-........
T Consensus 8 G~mG~~iA~~l~~~G~~V~~---~dr~~~~~~~~~~~--------g~~~~~~~~~~~-~~aDivi~~vp~~~~~~~v~~~ 75 (291)
T TIGR01505 8 GIMGSPMSINLAKAGYQLHV---TTIGPEVADELLAA--------GAVTAETARQVT-EQADVIFTMVPDSPQVEEVAFG 75 (291)
T ss_pred cHHHHHHHHHHHHCCCeEEE---EcCCHHHHHHHHHC--------CCcccCCHHHHH-hcCCEEEEecCCHHHHHHHHcC
Confidence 99999999999999999887 34566666555443 222221 22333 5899999986543222111
Q ss_pred ----Hhcc-cceEEEecCCcch--HHHHHHHhccCCCcccccC-------------------cH-HH---Hhh---cc--
Q psy8846 429 ----AHKI-QAKIIAEAANESV--QESLERRFGNVGGRIPVTP-------------------SE-SF---QKR---IS-- 473 (568)
Q Consensus 429 ----a~~i-~AkiIvE~AN~~~--~~~l~~~l~~~GggI~vvP-------------------de-~~---q~~---~~-- 473 (568)
...+ .-++|+...+... .+.+.+.+.+.|..+.-.| |+ .+ ... .+
T Consensus 76 ~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~ 155 (291)
T TIGR01505 76 ENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKN 155 (291)
T ss_pred cchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 1222 2468887666443 2234444443331111111 11 11 110 11
Q ss_pred -----CCCcH---HHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhh
Q psy8846 474 -----GASEK---DIVHSGLDYTMERSARAIMKTAMKYNLGHLDINAHA 514 (568)
Q Consensus 474 -----~~we~---e~V~~~L~~~M~~a~~~V~~~a~~~~~~~~dlR~AA 514 (568)
....- ..+++-+...+..++.+.+..+++++ +|+.+..
T Consensus 156 ~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G---id~~~~~ 201 (291)
T TIGR01505 156 IVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAG---VDPVRVR 201 (291)
T ss_pred eEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCHHHHH
Confidence 01111 24556666667777889999999988 6776654
No 62
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=59.18 E-value=11 Score=37.48 Aligned_cols=87 Identities=13% Similarity=0.011 Sum_probs=49.7
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcc---cCCC-CeecCCCCcccccceEEeeccccCCCCh--
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIV---GFPG-AVPYEGENLMYEPCDIFVPAAVEKVITK-- 426 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~---~~~g-a~~i~~~~ll~~~cDIliPaAl~~~It~-- 426 (568)
|++|+.+|+.|.+.|.+|+.+ + -+.+.+.+......... ++.. ....+..+. ..+||+++-|.-...+.+
T Consensus 10 G~mG~ala~~L~~~G~~V~v~-~--r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea-~~~aDvVilavp~~~~~~~l 85 (219)
T TIGR01915 10 GDQGKGLALRLAKAGNKIIIG-S--RDLEKAEEAAAKALEELGHGGSDIKVTGADNAEA-AKRADVVILAVPWDHVLKTL 85 (219)
T ss_pred CHHHHHHHHHHHhCCCEEEEE-E--cCHHHHHHHHHHHHhhccccCCCceEEEeChHHH-HhcCCEEEEECCHHHHHHHH
Confidence 899999999999999988764 2 35555544433211000 1110 111122223 347899988765443322
Q ss_pred -hhHhcccceEEEecCCc
Q psy8846 427 -NNAHKIQAKIIAEAANE 443 (568)
Q Consensus 427 -~na~~i~AkiIvE~AN~ 443 (568)
+-.+.++.++|+..+|+
T Consensus 86 ~~l~~~l~~~vvI~~~ng 103 (219)
T TIGR01915 86 ESLRDELSGKLVISPVVP 103 (219)
T ss_pred HHHHHhccCCEEEEeccC
Confidence 12233455899999885
No 63
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=58.25 E-value=30 Score=35.58 Aligned_cols=92 Identities=12% Similarity=0.154 Sum_probs=54.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecC-CCCcccccceEEeeccccCCCChh----
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYE-GENLMYEPCDIFVPAAVEKVITKN---- 427 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~-~~~ll~~~cDIliPaAl~~~It~~---- 427 (568)
|++|..+|+.|.+.|.+|++ .+.+.+.+.+.... ++...+ .++++ .+||+++-|.-...-..+
T Consensus 11 G~mG~~~a~~l~~~g~~v~~---~d~~~~~~~~~~~~--------g~~~~~~~~e~~-~~~d~vi~~vp~~~~~~~v~~~ 78 (296)
T PRK11559 11 GIMGKPMSKNLLKAGYSLVV---YDRNPEAVAEVIAA--------GAETASTAKAVA-EQCDVIITMLPNSPHVKEVALG 78 (296)
T ss_pred CHHHHHHHHHHHHCCCeEEE---EcCCHHHHHHHHHC--------CCeecCCHHHHH-hcCCEEEEeCCCHHHHHHHHcC
Confidence 99999999999999999876 34566665554432 222222 23333 479999988653321111
Q ss_pred ---hHhccc-ceEEEecCCcch--HHHHHHHhccC
Q psy8846 428 ---NAHKIQ-AKIIAEAANESV--QESLERRFGNV 456 (568)
Q Consensus 428 ---na~~i~-AkiIvE~AN~~~--~~~l~~~l~~~ 456 (568)
..+.++ -++|++..+... .+.+.+.+.+.
T Consensus 79 ~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~ 113 (296)
T PRK11559 79 ENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAK 113 (296)
T ss_pred cchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHc
Confidence 223333 478887766543 23444444443
No 64
>PRK07680 late competence protein ComER; Validated
Probab=57.97 E-value=24 Score=36.02 Aligned_cols=101 Identities=15% Similarity=0.136 Sum_probs=59.0
Q ss_pred cCHHHHHHHHHHHCCC---eEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecC-CCCcccccceEEeeccccCCCChhh
Q psy8846 353 GPVSMYLPQIWVQEKG---KCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYE-GENLMYEPCDIFVPAAVEKVITKNN 428 (568)
Q Consensus 353 GnVG~~~A~~L~~~Ga---kvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~-~~~ll~~~cDIliPaAl~~~It~~n 428 (568)
|++|..+++.|.+.|. .-|.|.|. +.+.+....++. ++.+... +.+++ .+|||++-|.-...+ .+-
T Consensus 9 G~mG~ala~~L~~~g~~~~~~v~v~~r--~~~~~~~~~~~~------~g~~~~~~~~~~~-~~aDiVilav~p~~~-~~v 78 (273)
T PRK07680 9 GNMGTILIEAFLESGAVKPSQLTITNR--TPAKAYHIKERY------PGIHVAKTIEEVI-SQSDLIFICVKPLDI-YPL 78 (273)
T ss_pred cHHHHHHHHHHHHCCCCCcceEEEECC--CHHHHHHHHHHc------CCeEEECCHHHHH-HhCCEEEEecCHHHH-HHH
Confidence 9999999999999884 23444444 566655544432 2333332 22333 589999998754432 222
Q ss_pred ----Hhccc-ceEEEecCCcchHHHHHHHhccCCCcccccCc
Q psy8846 429 ----AHKIQ-AKIIAEAANESVQESLERRFGNVGGRIPVTPS 465 (568)
Q Consensus 429 ----a~~i~-AkiIvE~AN~~~~~~l~~~l~~~GggI~vvPd 465 (568)
++.++ -++|+.-+|+--.+.|++.+... .+.++|.
T Consensus 79 l~~l~~~l~~~~~iis~~ag~~~~~L~~~~~~~--~~r~~p~ 118 (273)
T PRK07680 79 LQKLAPHLTDEHCLVSITSPISVEQLETLVPCQ--VARIIPS 118 (273)
T ss_pred HHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCC--EEEECCC
Confidence 23343 46888888855455566655432 2445554
No 65
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=57.53 E-value=55 Score=33.53 Aligned_cols=105 Identities=10% Similarity=0.080 Sum_probs=58.7
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccccCCCChh-----
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKN----- 427 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~~It~~----- 427 (568)
|.+|..++..|.+.|++|+.+ +-+.+++.+..++... +.....++.++....+|||+|-|.-.+.-...
T Consensus 126 Gg~g~aia~~L~~~g~~v~v~---~R~~~~~~~la~~~~~---~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~ 199 (270)
T TIGR00507 126 GGAARAVALPLLKADCNVIIA---NRTVSKAEELAERFQR---YGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPV 199 (270)
T ss_pred cHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHHHhh---cCceEEechhhhcccCccEEEECCCCCCCCCCCCCCC
Confidence 899999999999999976653 3455555555443211 11112223233323479999988754422111
Q ss_pred hHhccc-ceEEEecCCcchHHHHHHHhccCCCcccccCc
Q psy8846 428 NAHKIQ-AKIIAEAANESVQESLERRFGNVGGRIPVTPS 465 (568)
Q Consensus 428 na~~i~-AkiIvE~AN~~~~~~l~~~l~~~GggI~vvPd 465 (568)
....++ -++|++-.-.|....|-+..+++| +.++.-
T Consensus 200 ~~~~l~~~~~v~D~~y~p~~T~ll~~A~~~G--~~~vdG 236 (270)
T TIGR00507 200 PAEKLKEGMVVYDMVYNPGETPFLAEAKSLG--TKTIDG 236 (270)
T ss_pred CHHHcCCCCEEEEeccCCCCCHHHHHHHHCC--CeeeCC
Confidence 122233 358888887775434444445554 454544
No 66
>PRK08177 short chain dehydrogenase; Provisional
Probab=56.55 E-value=9.4 Score=37.16 Aligned_cols=31 Identities=10% Similarity=0.025 Sum_probs=24.6
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLAL 383 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L 383 (568)
|.+|+++|+.|.+.|++|++++-..-+.+.+
T Consensus 11 g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 41 (225)
T PRK08177 11 RGLGLGLVDRLLERGWQVTATVRGPQQDTAL 41 (225)
T ss_pred chHHHHHHHHHHhCCCEEEEEeCCCcchHHH
Confidence 8899999999999999999876444444443
No 67
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=56.24 E-value=13 Score=41.09 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=48.6
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccc-cCCCChhhHhc
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAV-EKVITKNNAHK 431 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl-~~~It~~na~~ 431 (568)
|.+|..+|+.+...|++|+++ +.|+.+..+.... |.+.++.++.+ ..+||+|-|.- .++|+.+....
T Consensus 204 G~IG~~vA~~ak~~Ga~ViV~---d~dp~r~~~A~~~--------G~~v~~leeal-~~aDVVItaTG~~~vI~~~~~~~ 271 (406)
T TIGR00936 204 GWCGKGIAMRARGMGARVIVT---EVDPIRALEAAMD--------GFRVMTMEEAA-KIGDIFITATGNKDVIRGEHFEN 271 (406)
T ss_pred CHHHHHHHHHHhhCcCEEEEE---eCChhhHHHHHhc--------CCEeCCHHHHH-hcCCEEEECCCCHHHHHHHHHhc
Confidence 999999999999999998873 3465544333221 33333333443 47999988753 44566666666
Q ss_pred cc-ceEEEecCC
Q psy8846 432 IQ-AKIIAEAAN 442 (568)
Q Consensus 432 i~-AkiIvE~AN 442 (568)
++ -.+++-.+-
T Consensus 272 mK~GailiN~G~ 283 (406)
T TIGR00936 272 MKDGAIVANIGH 283 (406)
T ss_pred CCCCcEEEEECC
Confidence 65 235554444
No 68
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=55.40 E-value=38 Score=36.52 Aligned_cols=127 Identities=9% Similarity=0.039 Sum_probs=74.2
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCC-cccccceEEeec-----cccCCCCh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGEN-LMYEPCDIFVPA-----AVEKVITK 426 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~-ll~~~cDIliPa-----Al~~~It~ 426 (568)
|.+|..+|++|.+.|++-|.|+..-... ..|.+. ..+. -+..++||+|-| +-.-.|+.
T Consensus 183 Gem~~l~a~~L~~~g~~~i~v~nRt~~~-------------~~~~~~---~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~ 246 (338)
T PRK00676 183 SEINRKVAYYLQRQGYSRITFCSRQQLT-------------LPYRTV---VREELSFQDPYDVIFFGSSESAYAFPHLSW 246 (338)
T ss_pred cHHHHHHHHHHHHcCCCEEEEEcCCccc-------------cchhhh---hhhhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence 9999999999999997655555442211 111110 0000 123578999954 66779999
Q ss_pred hhHhcccceEEEecCCcchHHHHHHHhccCCCccc-ccCc---HHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8846 427 NNAHKIQAKIIAEAANESVQESLERRFGNVGGRIP-VTPS---ESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMK 502 (568)
Q Consensus 427 ~na~~i~AkiIvE~AN~~~~~~l~~~l~~~GggI~-vvPd---e~~q~~~~~~we~e~V~~~L~~~M~~a~~~V~~~a~~ 502 (568)
+....+..|++++-|++.--+..... . +|. +--| ++++.+... +.+.-.+-+.+++....+.|+..++
T Consensus 247 ~~~~~~~~r~~iDLAvPRdId~v~~~---~--~v~Ly~iDdL~~i~~~n~~~---R~~~~~~ae~iI~~~~~~~~~~~~~ 318 (338)
T PRK00676 247 ESLADIPDRIVFDFNVPRTFPWSETP---F--PHRYLDMDFISEWVQKHLQC---RKEVNNKHKLSLREAAYKQWESYEK 318 (338)
T ss_pred HHHhhccCcEEEEecCCCCCcccccc---C--CcEEEEhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98877777899999997632222111 1 232 2233 333333322 3334455566666666667766666
Q ss_pred c
Q psy8846 503 Y 503 (568)
Q Consensus 503 ~ 503 (568)
.
T Consensus 319 ~ 319 (338)
T PRK00676 319 K 319 (338)
T ss_pred H
Confidence 4
No 69
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=55.31 E-value=15 Score=39.74 Aligned_cols=81 Identities=14% Similarity=0.193 Sum_probs=50.5
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCc-c-cCCCCeecCCCCcccccceEEeeccc------cCCC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTI-V-GFPGAVPYEGENLMYEPCDIFVPAAV------EKVI 424 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v-~-~~~ga~~i~~~~ll~~~cDIliPaAl------~~~I 424 (568)
|.+|..+++.|...|++|+++ +.+.+++.+.....+.. . .+...+.+ .+.+ .++||+|=|+. ...|
T Consensus 176 G~vG~~aa~~a~~lGa~V~v~---d~~~~~~~~l~~~~g~~v~~~~~~~~~l--~~~l-~~aDvVI~a~~~~g~~~p~li 249 (370)
T TIGR00518 176 GVVGTNAAKMANGLGATVTIL---DINIDRLRQLDAEFGGRIHTRYSNAYEI--EDAV-KRADLLIGAVLIPGAKAPKLV 249 (370)
T ss_pred CHHHHHHHHHHHHCCCeEEEE---ECCHHHHHHHHHhcCceeEeccCCHHHH--HHHH-ccCCEEEEccccCCCCCCcCc
Confidence 999999999999999987663 34666766655544321 1 01000000 1122 37999998862 3457
Q ss_pred ChhhHhccc-ceEEEe
Q psy8846 425 TKNNAHKIQ-AKIIAE 439 (568)
Q Consensus 425 t~~na~~i~-AkiIvE 439 (568)
+.+-...++ -.+|+.
T Consensus 250 t~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 250 SNSLVAQMKPGAVIVD 265 (370)
T ss_pred CHHHHhcCCCCCEEEE
Confidence 888888776 346666
No 70
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=55.21 E-value=27 Score=35.24 Aligned_cols=82 Identities=20% Similarity=0.134 Sum_probs=49.9
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccccCCCChhhHhcc
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKI 432 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~~It~~na~~i 432 (568)
||+|+.+|+.|...|.+|+--|-. +++++....+..+ +..+..++++ -...|||.+.+ +.-.=..+.+..+
T Consensus 10 GniG~alA~~~a~ag~eV~igs~r--~~~~~~a~a~~l~-----~~i~~~~~~d-A~~~aDVVvLA-VP~~a~~~v~~~l 80 (211)
T COG2085 10 GNIGSALALRLAKAGHEVIIGSSR--GPKALAAAAAALG-----PLITGGSNED-AAALADVVVLA-VPFEAIPDVLAEL 80 (211)
T ss_pred ChHHHHHHHHHHhCCCeEEEecCC--ChhHHHHHHHhhc-----cccccCChHH-HHhcCCEEEEe-ccHHHHHhHHHHH
Confidence 999999999999999999875322 3444444443322 1222222222 22459998886 4333333444444
Q ss_pred ----cceEEEecCCc
Q psy8846 433 ----QAKIIAEAANE 443 (568)
Q Consensus 433 ----~AkiIvE~AN~ 443 (568)
.=|||+...|+
T Consensus 81 ~~~~~~KIvID~tnp 95 (211)
T COG2085 81 RDALGGKIVIDATNP 95 (211)
T ss_pred HHHhCCeEEEecCCC
Confidence 45999999886
No 71
>PLN02858 fructose-bisphosphate aldolase
Probab=54.44 E-value=26 Score=44.48 Aligned_cols=150 Identities=12% Similarity=0.070 Sum_probs=90.3
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccccCCCChhh----
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNN---- 428 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~~It~~n---- 428 (568)
|++|+.+|+.|.+.|..|.+ .+.+.++..++.+. |++..+.-.=+..+||+++-|.-......+.
T Consensus 13 G~MG~~mA~~L~~~G~~v~v---~dr~~~~~~~l~~~--------Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~ 81 (1378)
T PLN02858 13 DSLSFELASSLLRSGFKVQA---FEISTPLMEKFCEL--------GGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGD 81 (1378)
T ss_pred hHHHHHHHHHHHHCCCeEEE---EcCCHHHHHHHHHc--------CCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhch
Confidence 99999999999999999887 56788887777654 4444432222345799999886544333322
Q ss_pred ---Hhccc-ceEEEecCCcc--hHHHHHHHhccCCCccccc---------------------Cc-HH---HHh---hcc-
Q psy8846 429 ---AHKIQ-AKIIAEAANES--VQESLERRFGNVGGRIPVT---------------------PS-ES---FQK---RIS- 473 (568)
Q Consensus 429 ---a~~i~-AkiIvE~AN~~--~~~~l~~~l~~~GggI~vv---------------------Pd-e~---~q~---~~~- 473 (568)
++.++ -++|++-.... ....+.+.+..+|.++.++ -+ +. ++. .++
T Consensus 82 ~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~ 161 (1378)
T PLN02858 82 EGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQ 161 (1378)
T ss_pred hhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcC
Confidence 22332 35777666533 3445666666555222111 11 11 111 011
Q ss_pred ------C----CCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhhhh
Q psy8846 474 ------G----ASEKDIVHSGLDYTMERSARAIMKTAMKYNLGHLDINAHACV 516 (568)
Q Consensus 474 ------~----~we~e~V~~~L~~~M~~a~~~V~~~a~~~~~~~~dlR~AAyi 516 (568)
| ......+++-|...+..++.+.+..+++++ +|+.+..=+
T Consensus 162 ~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~G---ld~~~l~~v 211 (1378)
T PLN02858 162 KLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAG---IHPWIIYDI 211 (1378)
T ss_pred ceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCHHHHHHH
Confidence 1 123455777777777788888999999998 677665433
No 72
>PLN02494 adenosylhomocysteinase
Probab=54.36 E-value=15 Score=41.37 Aligned_cols=78 Identities=15% Similarity=0.223 Sum_probs=50.5
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccc-cCCCChhhHhc
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAV-EKVITKNNAHK 431 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl-~~~It~~na~~ 431 (568)
|.+|..+|+.+...|++|++ .+.|..+....... |...++-++++ ..+||++-|.- .++|+.+....
T Consensus 263 G~IGr~vA~~aka~Ga~VIV---~e~dp~r~~eA~~~--------G~~vv~leEal-~~ADVVI~tTGt~~vI~~e~L~~ 330 (477)
T PLN02494 263 GDVGKGCAAAMKAAGARVIV---TEIDPICALQALME--------GYQVLTLEDVV-SEADIFVTTTGNKDIIMVDHMRK 330 (477)
T ss_pred CHHHHHHHHHHHHCCCEEEE---EeCCchhhHHHHhc--------CCeeccHHHHH-hhCCEEEECCCCccchHHHHHhc
Confidence 99999999999999999887 33455443333222 22222223443 36899998654 45678888888
Q ss_pred ccc-eEEEecCC
Q psy8846 432 IQA-KIIAEAAN 442 (568)
Q Consensus 432 i~A-kiIvE~AN 442 (568)
++. -+++-.+.
T Consensus 331 MK~GAiLiNvGr 342 (477)
T PLN02494 331 MKNNAIVCNIGH 342 (477)
T ss_pred CCCCCEEEEcCC
Confidence 874 35554444
No 73
>PRK07574 formate dehydrogenase; Provisional
Probab=53.90 E-value=34 Score=37.44 Aligned_cols=81 Identities=11% Similarity=0.114 Sum_probs=54.1
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeec-CCCCcccccceEEeeccc-----cCCCCh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPY-EGENLMYEPCDIFVPAAV-----EKVITK 426 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i-~~~~ll~~~cDIliPaAl-----~~~It~ 426 (568)
|++|+.+|+.|...|++|++..-+..+.+.. ... +++.. +.++++ ..|||++-|.- .+.|++
T Consensus 201 G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~----~~~-------g~~~~~~l~ell-~~aDvV~l~lPlt~~T~~li~~ 268 (385)
T PRK07574 201 GRIGLAVLRRLKPFDVKLHYTDRHRLPEEVE----QEL-------GLTYHVSFDSLV-SVCDVVTIHCPLHPETEHLFDA 268 (385)
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCchhhH----hhc-------CceecCCHHHHh-hcCCEEEEcCCCCHHHHHHhCH
Confidence 9999999999999999999864333222211 111 23322 334444 57999988763 567777
Q ss_pred hhHhccc-ceEEEecCCcch
Q psy8846 427 NNAHKIQ-AKIIAEAANESV 445 (568)
Q Consensus 427 ~na~~i~-AkiIvE~AN~~~ 445 (568)
+....+| -.+++.-|-+++
T Consensus 269 ~~l~~mk~ga~lIN~aRG~i 288 (385)
T PRK07574 269 DVLSRMKRGSYLVNTARGKI 288 (385)
T ss_pred HHHhcCCCCcEEEECCCCch
Confidence 7777776 357887777775
No 74
>PRK09291 short chain dehydrogenase; Provisional
Probab=53.82 E-value=9.5 Score=37.58 Aligned_cols=22 Identities=0% Similarity=-0.222 Sum_probs=20.4
Q ss_pred cCHHHHHHHHHHHCCCeEeEeC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVs 374 (568)
|.+|+++++.|.+.|++|++++
T Consensus 12 g~iG~~ia~~l~~~G~~v~~~~ 33 (257)
T PRK09291 12 SGFGREVALRLARKGHNVIAGV 33 (257)
T ss_pred CHHHHHHHHHHHHCCCEEEEEe
Confidence 8899999999999999999865
No 75
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=53.59 E-value=50 Score=35.56 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=53.4
Q ss_pred cCHHHHHHHHHHHCC--CeEeEeCCCCCCHHHHHHHHHhcCCcccCCCC-------e-----ec------CCC--Ccccc
Q psy8846 353 GPVSMYLPQIWVQEK--GKCPGLPTHTRKPLALEEYKLDNGTIVGFPGA-------V-----PY------EGE--NLMYE 410 (568)
Q Consensus 353 GnVG~~~A~~L~~~G--akvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga-------~-----~i------~~~--~ll~~ 410 (568)
|..|+.+++.+.+.+ .+||||.|. .|++.+....+..+.-..|++. . .| +++ .+-++
T Consensus 10 GrIGR~v~ra~~~~~~dieVVaInd~-t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~p~~l~w~d~ 88 (335)
T COG0057 10 GRIGRLVARAALERDGDIEVVAINDL-TDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERDPANLPWADL 88 (335)
T ss_pred cHHHHHHHHHHHhCCCCeEEEEEecC-CCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCChHHCCcccc
Confidence 999999999999875 899999986 4555544333322212223221 0 11 112 23456
Q ss_pred cceEEeeccccCCCChhhHhc-cc---ceEEEec
Q psy8846 411 PCDIFVPAAVEKVITKNNAHK-IQ---AKIIAEA 440 (568)
Q Consensus 411 ~cDIliPaAl~~~It~~na~~-i~---AkiIvE~ 440 (568)
.+||.+=|.-... +.+|+++ +. ||-|.-+
T Consensus 89 gvdiVve~Tg~f~-~~e~~~~hl~agGaKkV~is 121 (335)
T COG0057 89 GVDIVVECTGKFT-GREKAEKHLKAGGAKKVLIS 121 (335)
T ss_pred CccEEEECCCCcc-chhhHHHHHHhcCCCEEEEc
Confidence 7899999966655 9999984 53 4555443
No 76
>KOG0068|consensus
Probab=53.48 E-value=35 Score=37.07 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=47.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEE------eeccccCCCCh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIF------VPAAVEKVITK 426 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIl------iPaAl~~~It~ 426 (568)
|.+|+.+|+.+.-.|.++|+-- .+.+.++.+. .|.+.++-+|+|. .||.+ .| +.++.|++
T Consensus 155 GrIGseVA~r~k~~gm~vI~~d--pi~~~~~~~a----------~gvq~vsl~Eil~-~ADFitlH~PLtP-~T~~lin~ 220 (406)
T KOG0068|consen 155 GRIGSEVAVRAKAMGMHVIGYD--PITPMALAEA----------FGVQLVSLEEILP-KADFITLHVPLTP-STEKLLND 220 (406)
T ss_pred ccchHHHHHHHHhcCceEEeec--CCCchHHHHh----------ccceeeeHHHHHh-hcCEEEEccCCCc-chhhccCH
Confidence 9999999999999999999821 2333333221 1445555555553 35543 23 36777887
Q ss_pred hhHhccc-ceEEEecCCcc
Q psy8846 427 NNAHKIQ-AKIIAEAANES 444 (568)
Q Consensus 427 ~na~~i~-AkiIvE~AN~~ 444 (568)
+.-.+.| --.|+..|-+.
T Consensus 221 ~tfA~mKkGVriIN~aRGG 239 (406)
T KOG0068|consen 221 ETFAKMKKGVRIINVARGG 239 (406)
T ss_pred HHHHHhhCCcEEEEecCCc
Confidence 7766664 22334444444
No 77
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=53.42 E-value=25 Score=36.86 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=52.4
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCc--ccccceEEeeccccCCCChhhHh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENL--MYEPCDIFVPAAVEKVITKNNAH 430 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~l--l~~~cDIliPaAl~~~It~~na~ 430 (568)
|.+|..+++.|...|++|+++. .+.+++.... .. |++.++.+++ +-.++||+|=|.-...|+++-..
T Consensus 161 G~iG~~~a~~L~~~Ga~V~v~~---r~~~~~~~~~-~~-------G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~~l~ 229 (296)
T PRK08306 161 GRTGMTLARTLKALGANVTVGA---RKSAHLARIT-EM-------GLSPFHLSELAEEVGKIDIIFNTIPALVLTKEVLS 229 (296)
T ss_pred cHHHHHHHHHHHHCCCEEEEEE---CCHHHHHHHH-Hc-------CCeeecHHHHHHHhCCCCEEEECCChhhhhHHHHH
Confidence 9999999999999999887743 3455543332 22 2333322222 12379999988655667777666
Q ss_pred ccc-ceEEEecCCcc
Q psy8846 431 KIQ-AKIIAEAANES 444 (568)
Q Consensus 431 ~i~-AkiIvE~AN~~ 444 (568)
.++ -.+|++-|..|
T Consensus 230 ~~~~g~vIIDla~~p 244 (296)
T PRK08306 230 KMPPEALIIDLASKP 244 (296)
T ss_pred cCCCCcEEEEEccCC
Confidence 664 45777777766
No 78
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=53.16 E-value=39 Score=34.19 Aligned_cols=91 Identities=5% Similarity=0.064 Sum_probs=50.8
Q ss_pred cCHHHHHHHHHHHCCCeE--eEeCCCCCCHHHHHHHHHhcCCcccCCCCeecC-CCCcccccceEEeeccccCCCChhhH
Q psy8846 353 GPVSMYLPQIWVQEKGKC--PGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYE-GENLMYEPCDIFVPAAVEKVITKNNA 429 (568)
Q Consensus 353 GnVG~~~A~~L~~~Gakv--vaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~-~~~ll~~~cDIliPaAl~~~It~~na 429 (568)
|++|+.+++.|.+.|..+ +.|+|. +.+.+.++.++. ++.+..+ ++++. .+|||++-|.-...+ .+-+
T Consensus 9 G~mG~aia~~L~~~g~~~~~i~v~~r--~~~~~~~l~~~~------~~~~~~~~~~~~~-~~aDvVilav~p~~~-~~vl 78 (258)
T PRK06476 9 GAITEAMVTGLLTSPADVSEIIVSPR--NAQIAARLAERF------PKVRIAKDNQAVV-DRSDVVFLAVRPQIA-EEVL 78 (258)
T ss_pred CHHHHHHHHHHHhCCCChheEEEECC--CHHHHHHHHHHc------CCceEeCCHHHHH-HhCCEEEEEeCHHHH-HHHH
Confidence 999999999999888543 455554 566666555543 2333332 33443 479999988765433 3333
Q ss_pred hcc---cceEEEecCCcchHHHHHHHh
Q psy8846 430 HKI---QAKIIAEAANESVQESLERRF 453 (568)
Q Consensus 430 ~~i---~AkiIvE~AN~~~~~~l~~~l 453 (568)
..+ +-++|+.-+-.--.+.|++.+
T Consensus 79 ~~l~~~~~~~vis~~ag~~~~~l~~~~ 105 (258)
T PRK06476 79 RALRFRPGQTVISVIAATDRAALLEWI 105 (258)
T ss_pred HHhccCCCCEEEEECCCCCHHHHHHHh
Confidence 333 224554433222234455443
No 79
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=52.89 E-value=63 Score=37.33 Aligned_cols=93 Identities=17% Similarity=0.121 Sum_probs=56.7
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcc----cccceEEeeccccCCCChh-
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLM----YEPCDIFVPAAVEKVITKN- 427 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll----~~~cDIliPaAl~~~It~~- 427 (568)
|.+|+.+++.|.+.|..+++ .+.|++.+.+.++. |.-.-|-+++ +.++| -.+||.++-|--....|..
T Consensus 409 Gr~G~~va~~L~~~g~~vvv---ID~d~~~v~~~~~~-g~~v~~GDat---~~~~L~~agi~~A~~vv~~~~d~~~n~~i 481 (601)
T PRK03659 409 GRFGQVIGRLLMANKMRITV---LERDISAVNLMRKY-GYKVYYGDAT---QLELLRAAGAEKAEAIVITCNEPEDTMKI 481 (601)
T ss_pred chHHHHHHHHHHhCCCCEEE---EECCHHHHHHHHhC-CCeEEEeeCC---CHHHHHhcCCccCCEEEEEeCCHHHHHHH
Confidence 99999999999999999887 35688887776543 3211111222 22333 2478987766433322222
Q ss_pred --hHhcc--cceEEEecCCcchHHHHHHH
Q psy8846 428 --NAHKI--QAKIIAEAANESVQESLERR 452 (568)
Q Consensus 428 --na~~i--~AkiIvE~AN~~~~~~l~~~ 452 (568)
.+.+. +.++|+=+.|..-.+.|.+.
T Consensus 482 ~~~~r~~~p~~~IiaRa~~~~~~~~L~~~ 510 (601)
T PRK03659 482 VELCQQHFPHLHILARARGRVEAHELLQA 510 (601)
T ss_pred HHHHHHHCCCCeEEEEeCCHHHHHHHHhC
Confidence 23332 46899988776655566554
No 80
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=51.94 E-value=25 Score=38.42 Aligned_cols=85 Identities=16% Similarity=0.114 Sum_probs=56.2
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeecc---------ccCC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAA---------VEKV 423 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaA---------l~~~ 423 (568)
|++|+.+|+.|...|.+|++. |+.. ...+ ......+-++++ ..|||++-+. ..+.
T Consensus 125 G~IG~~vA~~l~a~G~~V~~~-----dp~~-----~~~~-----~~~~~~~L~ell-~~sDiI~lh~PLt~~g~~~T~~l 188 (378)
T PRK15438 125 GNVGRRLQARLEALGIKTLLC-----DPPR-----ADRG-----DEGDFRSLDELV-QEADILTFHTPLFKDGPYKTLHL 188 (378)
T ss_pred CHHHHHHHHHHHHCCCEEEEE-----CCcc-----cccc-----cccccCCHHHHH-hhCCEEEEeCCCCCCcccccccc
Confidence 999999999999999999984 2211 0000 011222334555 4699998433 3467
Q ss_pred CChhhHhccc-ceEEEecCCcch--HHHHHHHh
Q psy8846 424 ITKNNAHKIQ-AKIIAEAANESV--QESLERRF 453 (568)
Q Consensus 424 It~~na~~i~-AkiIvE~AN~~~--~~~l~~~l 453 (568)
|+++...+++ -.+++..|-+++ .+.|.+.|
T Consensus 189 i~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL 221 (378)
T PRK15438 189 ADEKLIRSLKPGAILINACRGAVVDNTALLTCL 221 (378)
T ss_pred cCHHHHhcCCCCcEEEECCCchhcCHHHHHHHH
Confidence 8899988887 578898888886 23454444
No 81
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=51.87 E-value=32 Score=36.33 Aligned_cols=85 Identities=14% Similarity=0.190 Sum_probs=56.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeecc-----ccCCCChh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAA-----VEKVITKN 427 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaA-----l~~~It~~ 427 (568)
|++|+.+|+.+...|++|++..-++-. .. .+.+..+-++++ ..|||++-+. ..+.|+++
T Consensus 154 G~IG~~vA~~~~~fgm~V~~~d~~~~~--------~~-------~~~~~~~l~ell-~~sDvv~lh~Plt~~T~~li~~~ 217 (311)
T PRK08410 154 GTIGKRVAKIAQAFGAKVVYYSTSGKN--------KN-------EEYERVSLEELL-KTSDIISIHAPLNEKTKNLIAYK 217 (311)
T ss_pred CHHHHHHHHHHhhcCCEEEEECCCccc--------cc-------cCceeecHHHHh-hcCCEEEEeCCCCchhhcccCHH
Confidence 999999999999999999985422110 00 012233334555 4689998875 35678888
Q ss_pred hHhccc-ceEEEecCCcch--HHHHHHHh
Q psy8846 428 NAHKIQ-AKIIAEAANESV--QESLERRF 453 (568)
Q Consensus 428 na~~i~-AkiIvE~AN~~~--~~~l~~~l 453 (568)
...++| -.+++.-|-+++ .+.|.+.|
T Consensus 218 ~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL 246 (311)
T PRK08410 218 ELKLLKDGAILINVGRGGIVNEKDLAKAL 246 (311)
T ss_pred HHHhCCCCeEEEECCCccccCHHHHHHHH
Confidence 888886 567787777775 23444444
No 82
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=51.18 E-value=27 Score=39.56 Aligned_cols=153 Identities=14% Similarity=0.117 Sum_probs=90.4
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhc---CCcccCCCCeecCCCCcccc--cceEEeeccccCCCChh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDN---GTIVGFPGAVPYEGENLMYE--PCDIFVPAAVEKVITKN 427 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~---g~v~~~~ga~~i~~~~ll~~--~cDIliPaAl~~~It~~ 427 (568)
|+.|+.+|+.|.+.|.+|++ ...+.++..++.++. |. ..+..+. +.+++.+. .||+++-|-..+...++
T Consensus 15 G~MG~~mA~nL~~~G~~V~V---~NRt~~k~~~l~~~~~~~Ga-~~~~~a~--s~~e~v~~l~~~dvIi~~v~~~~aV~~ 88 (493)
T PLN02350 15 AVMGQNLALNIAEKGFPISV---YNRTTSKVDETVERAKKEGN-LPLYGFK--DPEDFVLSIQKPRSVIILVKAGAPVDQ 88 (493)
T ss_pred HHHHHHHHHHHHhCCCeEEE---ECCCHHHHHHHHHhhhhcCC-cccccCC--CHHHHHhcCCCCCEEEEECCCcHHHHH
Confidence 99999999999999999887 566777777665531 21 0010111 22344432 58999888655443333
Q ss_pred h----Hhcc-cceEEEecCCcch--HHHHHHHhccCCC----------------cccccCc---HH-------HHhhcc-
Q psy8846 428 N----AHKI-QAKIIAEAANESV--QESLERRFGNVGG----------------RIPVTPS---ES-------FQKRIS- 473 (568)
Q Consensus 428 n----a~~i-~AkiIvE~AN~~~--~~~l~~~l~~~Gg----------------gI~vvPd---e~-------~q~~~~- 473 (568)
. .+.+ +-++|+++.|... +..+.+.+...|. |-.+.|. +. ++....
T Consensus 89 Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~~a~~~v~pvL~~ia~k 168 (493)
T PLN02350 89 TIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIEDILEKVAAQ 168 (493)
T ss_pred HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCHHHHHHHHHHHHHHhhh
Confidence 3 3444 4689999999753 2334444333321 0012222 11 111110
Q ss_pred ----------C----CCcHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCChhhhh
Q psy8846 474 ----------G----ASEKDIVHSGLDYTMERSARAIMKTAMK-YNLGHLDINAHA 514 (568)
Q Consensus 474 ----------~----~we~e~V~~~L~~~M~~a~~~V~~~a~~-~~~~~~dlR~AA 514 (568)
| ..--..|++.++..+..++.+.+..+++ .+ +|..+.+
T Consensus 169 ~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~G---ld~~~l~ 221 (493)
T PLN02350 169 VDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGG---LSNEELA 221 (493)
T ss_pred cCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CCHHHHH
Confidence 0 0245668999999999999999999998 47 5655443
No 83
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=50.88 E-value=32 Score=35.78 Aligned_cols=147 Identities=13% Similarity=0.149 Sum_probs=82.6
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeec-CCCCcccc--cceEEeeccccCCCChhhH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPY-EGENLMYE--PCDIFVPAAVEKVITKNNA 429 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i-~~~~ll~~--~cDIliPaAl~~~It~~na 429 (568)
|++|..+|+.|.+.|..|++ . +.+.+++.+..+. |++.. +.+++... .||+++-|--......+..
T Consensus 9 G~mG~~mA~~L~~~g~~v~v-~--dr~~~~~~~~~~~--------g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~ 77 (299)
T PRK12490 9 GKMGGNMAERLREDGHEVVG-Y--DVNQEAVDVAGKL--------GITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI 77 (299)
T ss_pred cHHHHHHHHHHHhCCCEEEE-E--ECCHHHHHHHHHC--------CCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH
Confidence 99999999999999999875 3 4566666655432 23322 22344432 2788887755442333322
Q ss_pred ----hccc-ceEEEecCCcch--HHHHHHHhccCCCccccc--------------------Cc-H---HHHh---hccC-
Q psy8846 430 ----HKIQ-AKIIAEAANESV--QESLERRFGNVGGRIPVT--------------------PS-E---SFQK---RISG- 474 (568)
Q Consensus 430 ----~~i~-AkiIvE~AN~~~--~~~l~~~l~~~GggI~vv--------------------Pd-e---~~q~---~~~~- 474 (568)
+.++ -++|++-++... ...+.+.+...| +.++ -| + .++. ..+.
T Consensus 78 ~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g--~~~vdapV~G~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~~~ 155 (299)
T PRK12490 78 KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERG--IHYVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALAPE 155 (299)
T ss_pred HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcC--CeEEeCCCCCCHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCc
Confidence 3332 368888877542 233444444433 2111 11 1 1111 1111
Q ss_pred ------------CCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhh
Q psy8846 475 ------------ASEKDIVHSGLDYTMERSARAIMKTAMKYNLGHLDINAH 513 (568)
Q Consensus 475 ------------~we~e~V~~~L~~~M~~a~~~V~~~a~~~~~~~~dlR~A 513 (568)
......+++-+...+..++.+.+..+++.+.+ +|+.+.
T Consensus 156 ~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~-ld~~~~ 205 (299)
T PRK12490 156 GPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFD-FDVEDV 205 (299)
T ss_pred CCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCHHHH
Confidence 12445577777788888888888999987622 455444
No 84
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=50.38 E-value=28 Score=36.57 Aligned_cols=86 Identities=12% Similarity=0.110 Sum_probs=53.4
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCccc--ccceEEeeccccCCCChhhHh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMY--EPCDIFVPAAVEKVITKNNAH 430 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~--~~cDIliPaAl~~~It~~na~ 430 (568)
|.+|..+++.|...|++-|.|.| .+.++..+...+.|. ..++.+++.+ .++||++-|.-.... .+...
T Consensus 187 G~iG~~~a~~L~~~g~~~V~v~~--r~~~ra~~la~~~g~-------~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~~~ 256 (311)
T cd05213 187 GEMGELAAKHLAAKGVAEITIAN--RTYERAEELAKELGG-------NAVPLDELLELLNEADVVISATGAPHY-AKIVE 256 (311)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEe--CCHHHHHHHHHHcCC-------eEEeHHHHHHHHhcCCEEEECCCCCch-HHHHH
Confidence 99999999999998877666664 466666666666432 2222122211 468999998765544 22111
Q ss_pred c----c--cceEEEecCCcc-hHHH
Q psy8846 431 K----I--QAKIIAEAANES-VQES 448 (568)
Q Consensus 431 ~----i--~AkiIvE~AN~~-~~~~ 448 (568)
. . +-++|++-||+. +++.
T Consensus 257 ~~~~~~~~~~~~viDlavPrdi~~~ 281 (311)
T cd05213 257 RAMKKRSGKPRLIVDLAVPRDIEPE 281 (311)
T ss_pred HHHhhCCCCCeEEEEeCCCCCCchh
Confidence 1 1 346899999854 4433
No 85
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=50.32 E-value=38 Score=34.90 Aligned_cols=102 Identities=9% Similarity=0.084 Sum_probs=58.4
Q ss_pred cCHHHHHHHHHHHCC----CeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeec-CCCCcccccceEEeeccccCCCChh
Q psy8846 353 GPVSMYLPQIWVQEK----GKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPY-EGENLMYEPCDIFVPAAVEKVITKN 427 (568)
Q Consensus 353 GnVG~~~A~~L~~~G----akvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i-~~~~ll~~~cDIliPaAl~~~It~~ 427 (568)
|++|..+++.|.+.| .+|++++.. +.+.+...... +++.+.. +..++ ..+||+++-|.-... ..+
T Consensus 10 G~mG~ala~~L~~~g~~~~~~V~~~~r~--~~~~~~~l~~~------~~~~~~~~~~~e~-~~~aDvVilavpp~~-~~~ 79 (277)
T PRK06928 10 GSMADMIATKLLETEVATPEEIILYSSS--KNEHFNQLYDK------YPTVELADNEAEI-FTKCDHSFICVPPLA-VLP 79 (277)
T ss_pred cHHHHHHHHHHHHCCCCCcccEEEEeCC--cHHHHHHHHHH------cCCeEEeCCHHHH-HhhCCEEEEecCHHH-HHH
Confidence 999999999999988 577775532 12233333332 2222222 22233 358999998755443 223
Q ss_pred hHhc----cc-ceEEEecCCcchHHHHHHHhccCCCcccccCc
Q psy8846 428 NAHK----IQ-AKIIAEAANESVQESLERRFGNVGGRIPVTPS 465 (568)
Q Consensus 428 na~~----i~-AkiIvE~AN~~~~~~l~~~l~~~GggI~vvPd 465 (568)
-+.. ++ -++|+--+|+--.+.|++.+.+. .-|.++|.
T Consensus 80 vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~-~vvR~MPN 121 (277)
T PRK06928 80 LLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGL-QVSRLIPS 121 (277)
T ss_pred HHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCC-CEEEEeCc
Confidence 3333 33 34777788876556677766432 13456676
No 86
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=49.17 E-value=21 Score=37.61 Aligned_cols=185 Identities=13% Similarity=0.113 Sum_probs=100.2
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeecccc-----CCCChh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVE-----KVITKN 427 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~-----~~It~~ 427 (568)
|+.|+..|+.|.+.|..+.+ .+.++++-.+...+. |++..+...=....|||+|-|-.. .++..+
T Consensus 9 G~MG~pmA~~L~~aG~~v~v---~~r~~~ka~~~~~~~-------Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~ 78 (286)
T COG2084 9 GIMGSPMAANLLKAGHEVTV---YNRTPEKAAELLAAA-------GATVAASPAEAAAEADVVITMLPDDAAVRAVLFGE 78 (286)
T ss_pred chhhHHHHHHHHHCCCEEEE---EeCChhhhhHHHHHc-------CCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCc
Confidence 99999999999999998887 667777733333332 454443322355688998877432 233321
Q ss_pred h--Hhcc-cceEEEecCCcch--HHHHHHHhccCCCcccccC--------------------cHHHHh------hc----
Q psy8846 428 N--AHKI-QAKIIAEAANESV--QESLERRFGNVGGRIPVTP--------------------SESFQK------RI---- 472 (568)
Q Consensus 428 n--a~~i-~AkiIvE~AN~~~--~~~l~~~l~~~GggI~vvP--------------------de~~q~------~~---- 472 (568)
| +..+ +-+++++-.+..- ...+.+.+...|...+=.| .+.+.. ..
T Consensus 79 ~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i 158 (286)
T COG2084 79 NGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNI 158 (286)
T ss_pred cchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCce
Confidence 1 2222 2567777666442 2345555444432111001 011111 00
Q ss_pred ------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhhhhhee---e---cccC---cccceeecCCCch
Q psy8846 473 ------SGASEKDIVHSGLDYTMERSARAIMKTAMKYNLGHLDINAHACVTGK---P---INQG---GIHGRISATGRGV 537 (568)
Q Consensus 473 ------~~~we~e~V~~~L~~~M~~a~~~V~~~a~~~~~~~~dlR~AAyi~Ai---~---i~a~---~~~G~~~atg~gv 537 (568)
+.-..-..+++-|-.....++.+-+..+++.+ +|+..---++.- . ++.. -+.|-++ -
T Consensus 159 ~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~G---ld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~-----p 230 (286)
T COG2084 159 VHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAG---LDPDVVLEVISGGAAGSWILENYGPRMLEGDFS-----P 230 (286)
T ss_pred EEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHhccccCChHHHhhcchhhcCCCC-----c
Confidence 01134556777777888888888999999988 555443222111 1 1111 1112221 1
Q ss_pred hhhHHHhhcCHhhHhhhC
Q psy8846 538 FHGLENFIMEANYMSMVG 555 (568)
Q Consensus 538 ~~~~~~~~~~~~~~~~~g 555 (568)
-|.++.+++|-++.....
T Consensus 231 ~F~v~~~~KDl~la~~~A 248 (286)
T COG2084 231 GFAVDLMLKDLGLALDAA 248 (286)
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 277888888877765543
No 87
>PRK09620 hypothetical protein; Provisional
Probab=48.66 E-value=17 Score=36.78 Aligned_cols=27 Identities=7% Similarity=0.097 Sum_probs=23.8
Q ss_pred eeec----cCHHHHHHHHHHHCCCeEeEeCC
Q psy8846 349 KFSS----GPVSMYLPQIWVQEKGKCPGLPT 375 (568)
Q Consensus 349 R~~~----GnVG~~~A~~L~~~GakvvaVsD 375 (568)
||+. |.+|+++|+.|.+.|++|+.|+.
T Consensus 21 R~itN~SSGfiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 21 RGHTNMAKGTIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 6665 99999999999999999998763
No 88
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=47.73 E-value=5.6 Score=35.24 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=22.6
Q ss_pred cCHHHHHHHHHHHC----CCeEeEeCCCC
Q psy8846 353 GPVSMYLPQIWVQE----KGKCPGLPTHT 377 (568)
Q Consensus 353 GnVG~~~A~~L~~~----GakvvaVsD~G 377 (568)
|+||+.+++.|.+. +.++++|+|+.
T Consensus 3 G~VG~~l~~~l~~~~~~~~~~v~~v~~~~ 31 (117)
T PF03447_consen 3 GNVGRGLLEQLKEQQERIDLEVVGVADRS 31 (117)
T ss_dssp SHHHHHHHHHHHHTHHHCEEEEEEEEESS
T ss_pred CHHHHHHHHHHHhCcccCCEEEEEEEECC
Confidence 89999999999875 78999999885
No 89
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=46.68 E-value=48 Score=32.56 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=23.1
Q ss_pred eeec----cCHHHHHHHHHHHCCCeEeEeCCC
Q psy8846 349 KFSS----GPVSMYLPQIWVQEKGKCPGLPTH 376 (568)
Q Consensus 349 R~~~----GnVG~~~A~~L~~~GakvvaVsD~ 376 (568)
||+. |..|.++|+.+..+||.|+-|+-.
T Consensus 21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~ 52 (185)
T PF04127_consen 21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGP 52 (185)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-EEEEEE-T
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCEEEEEecC
Confidence 6665 999999999999999999998743
No 90
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=46.66 E-value=34 Score=37.39 Aligned_cols=85 Identities=14% Similarity=0.164 Sum_probs=55.1
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeecc---------ccCC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAA---------VEKV 423 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaA---------l~~~ 423 (568)
||+|+.+|+.|...|.+|++.. +.. . ...+ .....+-++++. .|||++-+. ..+.
T Consensus 125 G~IG~~va~~l~a~G~~V~~~D-----p~~--~--~~~~------~~~~~~l~ell~-~aDiV~lh~Plt~~g~~~T~~l 188 (381)
T PRK00257 125 GHVGGRLVRVLRGLGWKVLVCD-----PPR--Q--EAEG------DGDFVSLERILE-ECDVISLHTPLTKEGEHPTRHL 188 (381)
T ss_pred CHHHHHHHHHHHHCCCEEEEEC-----Ccc--c--cccc------CccccCHHHHHh-hCCEEEEeCcCCCCcccccccc
Confidence 9999999999999999998842 111 0 0000 112223345553 799988543 4478
Q ss_pred CChhhHhccc-ceEEEecCCcch--HHHHHHHh
Q psy8846 424 ITKNNAHKIQ-AKIIAEAANESV--QESLERRF 453 (568)
Q Consensus 424 It~~na~~i~-AkiIvE~AN~~~--~~~l~~~l 453 (568)
|+++....++ -.+++..|-+++ .+.|.+.|
T Consensus 189 i~~~~l~~mk~gailIN~aRG~vVde~AL~~aL 221 (381)
T PRK00257 189 LDEAFLASLRPGAWLINASRGAVVDNQALREAL 221 (381)
T ss_pred CCHHHHhcCCCCeEEEECCCCcccCHHHHHHHH
Confidence 9999988886 467788887775 23444443
No 91
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=46.48 E-value=91 Score=35.08 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhcCccccccCCCCCc----ccccch----hh-hcccCce-eec-c-CHHHHHHHHHHHCCCeEeEeCCC
Q psy8846 310 ITRRFTLELAKKGFIGEFKAVPGAR----AREGNV----TF-NLLFHYK-FSS-G-PVSMYLPQIWVQEKGKCPGLPTH 376 (568)
Q Consensus 310 ~~r~f~~~L~~~~~iGp~~dipapD----~~~maw----~y-~~~~G~R-~~~-G-nVG~~~A~~L~~~GakvvaVsD~ 376 (568)
-|.+|++.|.. +.| ++ |+ ++.-.| .| ..+.|.| ++. | .-..+++++|.+.|+++|+++-.
T Consensus 275 ~Td~fLr~Ia~--~~G----~~-pe~l~~Er~rl~dal~d~~~~L~GKrvai~Gdp~~~i~LarfL~elGmevV~vgt~ 346 (457)
T CHL00073 275 GTRAWIEKICS--VFG----IE-PQGLEEREEQIWESLKDYLDLVRGKSVFFMGDNLLEISLARFLIRCGMIVYEIGIP 346 (457)
T ss_pred HHHHHHHHHHH--HhC----cC-HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHHCCCEEEEEEeC
Confidence 35667777776 555 33 44 222333 11 1234555 333 3 68899999999999999998644
No 92
>PRK06849 hypothetical protein; Provisional
Probab=46.39 E-value=17 Score=39.13 Aligned_cols=90 Identities=12% Similarity=0.028 Sum_probs=47.3
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCe---ecCCCCc----ccccceEEeeccccCCCC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAV---PYEGENL----MYEPCDIFVPAAVEKVIT 425 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~---~i~~~~l----l~~~cDIliPaAl~~~It 425 (568)
..+|..+|+.|++.|.+|+++...........++.++.=.+- -|... .+ +.+ -..++|+++|+.-+-...
T Consensus 14 ~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p-~p~~d~~~~~--~~L~~i~~~~~id~vIP~~e~~~~~ 90 (389)
T PRK06849 14 APAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIP-SPRWDPDAYI--QALLSIVQRENIDLLIPTCEEVFYL 90 (389)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeC-CCCCCHHHHH--HHHHHHHHHcCCCEEEECChHHHhH
Confidence 357999999999999999987433222222222333221110 01110 01 112 235789999987544444
Q ss_pred hhhHhcccceEEEecCCcch
Q psy8846 426 KNNAHKIQAKIIAEAANESV 445 (568)
Q Consensus 426 ~~na~~i~AkiIvE~AN~~~ 445 (568)
+.+.+.+...+.+-+.+...
T Consensus 91 a~~~~~l~~~~~v~~~~~~~ 110 (389)
T PRK06849 91 SHAKEELSAYCEVLHFDFEL 110 (389)
T ss_pred HhhhhhhcCCcEEEcCCHHH
Confidence 55556665444443444443
No 93
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=46.22 E-value=59 Score=36.95 Aligned_cols=88 Identities=13% Similarity=0.084 Sum_probs=56.6
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccc-----cCCCChh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAV-----EKVITKN 427 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl-----~~~It~~ 427 (568)
|++|+.+|+.|...|++|++..-. .+.+.. .. .+.+..+.++++. .||+++-|.- .+.|+++
T Consensus 149 G~IG~~vA~~l~~fG~~V~~~d~~-~~~~~~----~~-------~g~~~~~l~ell~-~aDiV~l~lP~t~~t~~li~~~ 215 (526)
T PRK13581 149 GRIGSEVAKRAKAFGMKVIAYDPY-ISPERA----AQ-------LGVELVSLDELLA-RADFITLHTPLTPETRGLIGAE 215 (526)
T ss_pred CHHHHHHHHHHHhCCCEEEEECCC-CChhHH----Hh-------cCCEEEcHHHHHh-hCCEEEEccCCChHhhcCcCHH
Confidence 999999999999999999986432 222211 11 1344444456654 7999987753 4678877
Q ss_pred hHhccc-ceEEEecCCcch--HHHHHHHh
Q psy8846 428 NAHKIQ-AKIIAEAANESV--QESLERRF 453 (568)
Q Consensus 428 na~~i~-AkiIvE~AN~~~--~~~l~~~l 453 (568)
....++ -.+++.-|-+++ .+.|.+.|
T Consensus 216 ~l~~mk~ga~lIN~aRG~~vde~aL~~aL 244 (526)
T PRK13581 216 ELAKMKPGVRIINCARGGIIDEAALAEAL 244 (526)
T ss_pred HHhcCCCCeEEEECCCCceeCHHHHHHHH
Confidence 777775 456676777664 23344443
No 94
>PRK06500 short chain dehydrogenase; Provisional
Probab=45.66 E-value=21 Score=34.79 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=26.6
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhc
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDN 390 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~ 390 (568)
|.+|+++++.|.+.|++|+.+ +-+.+.+.+..++.
T Consensus 16 g~iG~~la~~l~~~g~~v~~~---~r~~~~~~~~~~~~ 50 (249)
T PRK06500 16 SGIGLETARQFLAEGARVAIT---GRDPASLEAARAEL 50 (249)
T ss_pred chHHHHHHHHHHHCCCEEEEe---cCCHHHHHHHHHHh
Confidence 899999999999999999885 33555555554443
No 95
>PRK06180 short chain dehydrogenase; Provisional
Probab=45.33 E-value=19 Score=36.42 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=26.6
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLD 389 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~ 389 (568)
|.+|+++++.|.+.|++|++++ -+.+.+.+....
T Consensus 14 ggiG~~la~~l~~~G~~V~~~~---r~~~~~~~l~~~ 47 (277)
T PRK06180 14 SGFGRALAQAALAAGHRVVGTV---RSEAARADFEAL 47 (277)
T ss_pred ChHHHHHHHHHHhCcCEEEEEe---CCHHHHHHHHhh
Confidence 7899999999999999998854 456666555444
No 96
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=45.15 E-value=17 Score=35.33 Aligned_cols=22 Identities=0% Similarity=-0.089 Sum_probs=20.5
Q ss_pred cCHHHHHHHHHHHCCCeEeEeC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVs 374 (568)
|.+|.++++.|.+.|++|++++
T Consensus 16 g~iG~~l~~~l~~~g~~V~~~~ 37 (251)
T PRK12826 16 RGIGRAIAVRLAADGAEVIVVD 37 (251)
T ss_pred CcHHHHHHHHHHHCCCEEEEEe
Confidence 8999999999999999998865
No 97
>PLN02928 oxidoreductase family protein
Probab=44.75 E-value=36 Score=36.54 Aligned_cols=99 Identities=9% Similarity=0.085 Sum_probs=57.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCC--CCeecCCCCcccccceEEeeccc-----cCCCC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFP--GAVPYEGENLMYEPCDIFVPAAV-----EKVIT 425 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~--ga~~i~~~~ll~~~cDIliPaAl-----~~~It 425 (568)
|++|+.+|+.|...|++|++..-+ .+.+.-....-....+..+. .....+-++++ ..|||++-|.- .+.|+
T Consensus 168 G~IG~~vA~~l~afG~~V~~~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell-~~aDiVvl~lPlt~~T~~li~ 245 (347)
T PLN02928 168 GAIGIELAKRLRPFGVKLLATRRS-WTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFA-GEADIVVLCCTLTKETAGIVN 245 (347)
T ss_pred CHHHHHHHHHHhhCCCEEEEECCC-CChhhhhhhccccccccccccccCcccCHHHHH-hhCCEEEECCCCChHhhcccC
Confidence 999999999999999999986432 11111000000000001110 11111223334 36999998853 67888
Q ss_pred hhhHhccc-ceEEEecCCcch--HHHHHHHh
Q psy8846 426 KNNAHKIQ-AKIIAEAANESV--QESLERRF 453 (568)
Q Consensus 426 ~~na~~i~-AkiIvE~AN~~~--~~~l~~~l 453 (568)
++...+++ -.+++.-|-+++ ++.|.+.|
T Consensus 246 ~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL 276 (347)
T PLN02928 246 DEFLSSMKKGALLVNIARGGLLDYDAVLAAL 276 (347)
T ss_pred HHHHhcCCCCeEEEECCCccccCHHHHHHHH
Confidence 88888886 468888887775 23344443
No 98
>PLN02688 pyrroline-5-carboxylate reductase
Probab=43.98 E-value=35 Score=34.44 Aligned_cols=88 Identities=11% Similarity=0.175 Sum_probs=49.3
Q ss_pred cCHHHHHHHHHHHCCC----eEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecC-CCCcccccceEEeeccccCCCChh
Q psy8846 353 GPVSMYLPQIWVQEKG----KCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYE-GENLMYEPCDIFVPAAVEKVITKN 427 (568)
Q Consensus 353 GnVG~~~A~~L~~~Ga----kvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~-~~~ll~~~cDIliPaAl~~~It~~ 427 (568)
|++|..+++.|.+.|. .|++..|. +.+......+ . |++..+ +.++. .+|||++.|.-.. ...+
T Consensus 9 G~mG~a~a~~L~~~g~~~~~~i~v~~~r--~~~~~~~~~~-~-------g~~~~~~~~e~~-~~aDvVil~v~~~-~~~~ 76 (266)
T PLN02688 9 GKMAEAIARGLVASGVVPPSRISTADDS--NPARRDVFQS-L-------GVKTAASNTEVV-KSSDVIILAVKPQ-VVKD 76 (266)
T ss_pred cHHHHHHHHHHHHCCCCCcceEEEEeCC--CHHHHHHHHH-c-------CCEEeCChHHHH-hcCCEEEEEECcH-HHHH
Confidence 9999999999999997 66653243 5555544433 2 333332 23333 4899999886322 2222
Q ss_pred hH----hccc-ceEEEecCCcchHHHHHHH
Q psy8846 428 NA----HKIQ-AKIIAEAANESVQESLERR 452 (568)
Q Consensus 428 na----~~i~-AkiIvE~AN~~~~~~l~~~ 452 (568)
-. +.++ -++|+.-+++--.+.+++.
T Consensus 77 vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~ 106 (266)
T PLN02688 77 VLTELRPLLSKDKLLVSVAAGITLADLQEW 106 (266)
T ss_pred HHHHHHhhcCCCCEEEEecCCCcHHHHHHH
Confidence 22 2232 3566655454333344443
No 99
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=43.75 E-value=58 Score=31.43 Aligned_cols=66 Identities=11% Similarity=0.144 Sum_probs=45.8
Q ss_pred cC-HHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeecccc-CCCChhhHh
Q psy8846 353 GP-VSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVE-KVITKNNAH 430 (568)
Q Consensus 353 Gn-VG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~-~~It~~na~ 430 (568)
|. +|..+|++|.+.|++|+. ++.- .+.+. + .-.+|||+|-|... +.|+.+..+
T Consensus 53 G~~~G~~~a~~L~~~g~~V~v-~~r~--~~~l~---------------------~-~l~~aDiVIsat~~~~ii~~~~~~ 107 (168)
T cd01080 53 SNIVGKPLAALLLNRNATVTV-CHSK--TKNLK---------------------E-HTKQADIVIVAVGKPGLVKGDMVK 107 (168)
T ss_pred cHHHHHHHHHHHhhCCCEEEE-EECC--chhHH---------------------H-HHhhCCEEEEcCCCCceecHHHcc
Confidence 76 588899999999998654 3221 11111 1 23479999998764 688888764
Q ss_pred cccceEEEecCCcch
Q psy8846 431 KIQAKIIAEAANESV 445 (568)
Q Consensus 431 ~i~AkiIvE~AN~~~ 445 (568)
. ..+|++.|.++-
T Consensus 108 ~--~~viIDla~prd 120 (168)
T cd01080 108 P--GAVVIDVGINRV 120 (168)
T ss_pred C--CeEEEEccCCCc
Confidence 4 589999998773
No 100
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=43.61 E-value=38 Score=34.80 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=40.4
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccccCCC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVI 424 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~~I 424 (568)
|++|..+|+.|.+.|.+|+++ +.+.+.+.+.... |.+... .+..+. -.+||+++-|.-...+
T Consensus 9 G~mG~sla~~L~~~g~~V~~~---d~~~~~~~~a~~~-g~~~~~-----~~~~~~-~~~aDlVilavp~~~~ 70 (279)
T PRK07417 9 GLIGGSLGLDLRSLGHTVYGV---SRRESTCERAIER-GLVDEA-----STDLSL-LKDCDLVILALPIGLL 70 (279)
T ss_pred cHHHHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHC-CCcccc-----cCCHhH-hcCCCEEEEcCCHHHH
Confidence 999999999999999988773 4566666655443 322111 111132 3589999999765443
No 101
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=42.59 E-value=42 Score=37.63 Aligned_cols=144 Identities=15% Similarity=0.213 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeec-CCCCcccc--cceEEeeccccCCCChhhH--
Q psy8846 355 VSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPY-EGENLMYE--PCDIFVPAAVEKVITKNNA-- 429 (568)
Q Consensus 355 VG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i-~~~~ll~~--~cDIliPaAl~~~It~~na-- 429 (568)
.|+.+|+.|.+.|.+|++ ...+.++..++.+..|. + .+++.. +.+++... .||+++-|-..+...++..
T Consensus 1 MG~~mA~nL~~~G~~V~v---~nrt~~~~~~l~~~~g~--~-~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~ 74 (459)
T PRK09287 1 MGKNLALNIASHGYTVAV---YNRTPEKTDEFLAEEGK--G-KKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQ 74 (459)
T ss_pred CcHHHHHHHHhCCCeEEE---ECCCHHHHHHHHHhhCC--C-CCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHH
Confidence 489999999999999887 56688888777664321 0 123322 23344432 5898888865554444443
Q ss_pred --hccc-ceEEEecCCcchH--HHHHHHhccCCC----------------cccccCc---HHH-------Hh---hc-cC
Q psy8846 430 --HKIQ-AKIIAEAANESVQ--ESLERRFGNVGG----------------RIPVTPS---ESF-------QK---RI-SG 474 (568)
Q Consensus 430 --~~i~-AkiIvE~AN~~~~--~~l~~~l~~~Gg----------------gI~vvPd---e~~-------q~---~~-~~ 474 (568)
+.+. -.+|+++.|.... ....+.+.+.|. |-.+.|- +.+ +. .. .+
T Consensus 75 l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~a~~~~~piL~~ia~~~~~g 154 (459)
T PRK09287 75 LLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDG 154 (459)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhhcCC
Confidence 3333 5799999995532 223333333321 0011111 111 11 11 11
Q ss_pred ----C--------CcHHHHHHHHHHHHHHHHHHHHHHHHh-cc
Q psy8846 475 ----A--------SEKDIVHSGLDYTMERSARAIMKTAMK-YN 504 (568)
Q Consensus 475 ----~--------we~e~V~~~L~~~M~~a~~~V~~~a~~-~~ 504 (568)
. .--..|++.++..|-.++.+.+..+++ .+
T Consensus 155 ~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~G 197 (459)
T PRK09287 155 EPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLG 197 (459)
T ss_pred CCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1 244569999999999999999999994 66
No 102
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=42.32 E-value=87 Score=30.12 Aligned_cols=88 Identities=13% Similarity=0.076 Sum_probs=49.8
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeec---CCCCc--ccccceEEeeccccCCCChh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPY---EGENL--MYEPCDIFVPAAVEKVITKN 427 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i---~~~~l--l~~~cDIliPaAl~~~It~~ 427 (568)
|.+|..+++.|.+.|++|+.++ -+.+++.+..+....-.+. ..... +.+++ .-.+|||++-|.-.+..+..
T Consensus 38 G~iG~~~a~~l~~~g~~V~l~~---R~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~diVi~at~~g~~~~~ 113 (194)
T cd01078 38 GPVGQRAAVLLAREGARVVLVG---RDLERAQKAADSLRARFGE-GVGAVETSDDAARAAAIKGADVVFAAGAAGVELLE 113 (194)
T ss_pred CHHHHHHHHHHHHCCCEEEEEc---CCHHHHHHHHHHHHhhcCC-cEEEeeCCCHHHHHHHHhcCCEEEECCCCCceech
Confidence 8999999999999999988754 3556655544432100000 01111 11111 11479999988766653222
Q ss_pred hHh-ccc-ceEEEecCCcc
Q psy8846 428 NAH-KIQ-AKIIAEAANES 444 (568)
Q Consensus 428 na~-~i~-AkiIvE~AN~~ 444 (568)
... ..+ .++|++-+.+|
T Consensus 114 ~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 114 KLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred hhhcccCceeEEEEccCCC
Confidence 222 223 36888876655
No 103
>PRK06182 short chain dehydrogenase; Validated
Probab=41.43 E-value=21 Score=35.82 Aligned_cols=31 Identities=10% Similarity=0.063 Sum_probs=24.7
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEY 386 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~ 386 (568)
|.+|.++|+.|.+.|++|++++ -+.+.+.+.
T Consensus 13 ggiG~~la~~l~~~G~~V~~~~---r~~~~l~~~ 43 (273)
T PRK06182 13 SGIGKATARRLAAQGYTVYGAA---RRVDKMEDL 43 (273)
T ss_pred ChHHHHHHHHHHHCCCEEEEEe---CCHHHHHHH
Confidence 7899999999999999999853 355565544
No 104
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=41.40 E-value=35 Score=33.79 Aligned_cols=71 Identities=10% Similarity=0.046 Sum_probs=40.4
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccccCCCChhhHh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAH 430 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~~It~~na~ 430 (568)
|.||...++.|.+.|++|+.|+. .++ +++.+...+ +.+.-- ...+..+++ .++|+++-|.-...+|..-+.
T Consensus 19 G~va~~ka~~Ll~~ga~V~VIs~-~~~-~~l~~l~~~-~~i~~~--~~~~~~~~l--~~adlViaaT~d~elN~~i~~ 89 (202)
T PRK06718 19 GKVAGRRAITLLKYGAHIVVISP-ELT-ENLVKLVEE-GKIRWK--QKEFEPSDI--VDAFLVIAATNDPRVNEQVKE 89 (202)
T ss_pred CHHHHHHHHHHHHCCCeEEEEcC-CCC-HHHHHHHhC-CCEEEE--ecCCChhhc--CCceEEEEcCCCHHHHHHHHH
Confidence 99999999999999999998874 333 234443333 322110 001111222 367877776555555544433
No 105
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=41.27 E-value=34 Score=36.57 Aligned_cols=86 Identities=10% Similarity=0.069 Sum_probs=49.3
Q ss_pred cCHHHHHHHHHHHC-CCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccccCCCChhhHhc
Q psy8846 353 GPVSMYLPQIWVQE-KGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHK 431 (568)
Q Consensus 353 GnVG~~~A~~L~~~-GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~~It~~na~~ 431 (568)
|.+|..+++.|.+. +.+++++++.. ..-....+.++.+.+..+...-+.++....+||+++-| +.+..+.+.+..
T Consensus 12 G~vG~~l~~~L~~~p~~elv~v~~~~---~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~a-lP~~~~~~~v~~ 87 (343)
T PRK00436 12 GYTGGELLRLLLNHPEVEIVAVTSRS---SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLA-LPHGVSMDLAPQ 87 (343)
T ss_pred CHHHHHHHHHHHcCCCceEEEEECcc---ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEEC-CCcHHHHHHHHH
Confidence 88999999999886 89999988631 11001111111111111111111222233579999886 677788888887
Q ss_pred c-cc-eEEEecCC
Q psy8846 432 I-QA-KIIAEAAN 442 (568)
Q Consensus 432 i-~A-kiIvE~AN 442 (568)
+ ++ +.|++.++
T Consensus 88 a~~aG~~VID~S~ 100 (343)
T PRK00436 88 LLEAGVKVIDLSA 100 (343)
T ss_pred HHhCCCEEEECCc
Confidence 7 33 56676665
No 106
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=41.01 E-value=63 Score=33.68 Aligned_cols=149 Identities=15% Similarity=0.129 Sum_probs=79.6
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecC-CCCcccccceEEeeccccC-----CCCh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYE-GENLMYEPCDIFVPAAVEK-----VITK 426 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~-~~~ll~~~cDIliPaAl~~-----~It~ 426 (568)
|++|..+|+.|.+.|..++. .| .+.. ..++. +. |+...+ +.++ ...||+++-|--.. ++..
T Consensus 9 G~MG~~ma~~L~~~G~~v~v-~~--~~~~-~~~~~-~~-------g~~~~~s~~~~-~~~advVi~~v~~~~~v~~v~~~ 75 (292)
T PRK15059 9 GIMGTPMAINLARAGHQLHV-TT--IGPV-ADELL-SL-------GAVSVETARQV-TEASDIIFIMVPDTPQVEEVLFG 75 (292)
T ss_pred CHHHHHHHHHHHHCCCeEEE-Ee--CCHh-HHHHH-Hc-------CCeecCCHHHH-HhcCCEEEEeCCChHHHHHHHcC
Confidence 99999999999999988764 33 3432 23332 22 333332 2233 35899999874432 2221
Q ss_pred hh--Hhcc-cceEEEecCCcch--HHHHHHHhccCCCccc-------------------ccCc-H---HHHh---hccC-
Q psy8846 427 NN--AHKI-QAKIIAEAANESV--QESLERRFGNVGGRIP-------------------VTPS-E---SFQK---RISG- 474 (568)
Q Consensus 427 ~n--a~~i-~AkiIvE~AN~~~--~~~l~~~l~~~GggI~-------------------vvPd-e---~~q~---~~~~- 474 (568)
++ +..+ +-++|++-....- ...+.+.+.++|...+ +--| + .++. .++.
T Consensus 76 ~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~ 155 (292)
T PRK15059 76 ENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKN 155 (292)
T ss_pred CcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCC
Confidence 11 2222 3478887776442 2334444444432111 1111 1 1111 0111
Q ss_pred ---------CCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhhhhh
Q psy8846 475 ---------ASEKDIVHSGLDYTMERSARAIMKTAMKYNLGHLDINAHACVT 517 (568)
Q Consensus 475 ---------~we~e~V~~~L~~~M~~a~~~V~~~a~~~~~~~~dlR~AAyi~ 517 (568)
...-..+++-|-..+..++.+.+..+++++ +|+.+..-++
T Consensus 156 ~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~G---ld~~~~~~~l 204 (292)
T PRK15059 156 ITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAG---ADPVRVRQAL 204 (292)
T ss_pred cEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCHHHHHHHH
Confidence 013344566666667778888889999988 7877665333
No 107
>PRK05717 oxidoreductase; Validated
Probab=40.92 E-value=25 Score=34.75 Aligned_cols=31 Identities=3% Similarity=-0.153 Sum_probs=23.7
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEY 386 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~ 386 (568)
|.+|+++|+.|.+.|++|+.+ +.+.+.+.+.
T Consensus 20 g~IG~~~a~~l~~~g~~v~~~---~~~~~~~~~~ 50 (255)
T PRK05717 20 RGIGLGIAAWLIAEGWQVVLA---DLDRERGSKV 50 (255)
T ss_pred chHHHHHHHHHHHcCCEEEEE---cCCHHHHHHH
Confidence 899999999999999999884 2344444443
No 108
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=40.79 E-value=42 Score=33.73 Aligned_cols=107 Identities=21% Similarity=0.224 Sum_probs=58.2
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHH-hcCC-cccCCCCeecCCC---CcccccceEEeeccccCCCCh-
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKL-DNGT-IVGFPGAVPYEGE---NLMYEPCDIFVPAAVEKVITK- 426 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~-~~g~-v~~~~ga~~i~~~---~ll~~~cDIliPaAl~~~It~- 426 (568)
|.||+.+|+.|.+.|..|++| ..|.+.+.++.. +.+. +..- .++ +.+ ++=-.++|+++-+-..+..|.
T Consensus 9 G~vG~~va~~L~~~g~~Vv~I---d~d~~~~~~~~~~~~~~~~v~g-d~t--~~~~L~~agi~~aD~vva~t~~d~~N~i 82 (225)
T COG0569 9 GRVGRSVARELSEEGHNVVLI---DRDEERVEEFLADELDTHVVIG-DAT--DEDVLEEAGIDDADAVVAATGNDEVNSV 82 (225)
T ss_pred cHHHHHHHHHHHhCCCceEEE---EcCHHHHHHHhhhhcceEEEEe-cCC--CHHHHHhcCCCcCCEEEEeeCCCHHHHH
Confidence 999999999999999999984 457777777544 2211 1100 010 111 122348999998765543332
Q ss_pred --hhHhc-ccc-eEEEecCCcchHHHHHHHhccCCCcccccCcHHHH
Q psy8846 427 --NNAHK-IQA-KIIAEAANESVQESLERRFGNVGGRIPVTPSESFQ 469 (568)
Q Consensus 427 --~na~~-i~A-kiIvE~AN~~~~~~l~~~l~~~GggI~vvPde~~q 469 (568)
..|.+ +.. ++|+=+-|..-.+.+++. +- -..+.|..++.
T Consensus 83 ~~~la~~~~gv~~viar~~~~~~~~~~~~~-g~---~~ii~Pe~~~~ 125 (225)
T COG0569 83 LALLALKEFGVPRVIARARNPEHEKVLEKL-GA---DVIISPEKLAA 125 (225)
T ss_pred HHHHHHHhcCCCcEEEEecCHHHHHHHHHc-CC---cEEECHHHHHH
Confidence 22222 443 344444343344555554 20 14456765553
No 109
>PRK12829 short chain dehydrogenase; Provisional
Probab=40.55 E-value=31 Score=34.01 Aligned_cols=33 Identities=6% Similarity=0.029 Sum_probs=25.3
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKL 388 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~ 388 (568)
|.+|+++++.|.+.|++|+.+. -+.+.+.+..+
T Consensus 21 g~iG~~~a~~L~~~g~~V~~~~---r~~~~~~~~~~ 53 (264)
T PRK12829 21 SGIGRAIAEAFAEAGARVHVCD---VSEAALAATAA 53 (264)
T ss_pred CcHHHHHHHHHHHCCCEEEEEe---CCHHHHHHHHH
Confidence 8999999999999999987743 45555555443
No 110
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=39.77 E-value=68 Score=34.14 Aligned_cols=88 Identities=15% Similarity=0.059 Sum_probs=56.0
Q ss_pred cCHHHHHHHHHH-HCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccc-----cCCCCh
Q psy8846 353 GPVSMYLPQIWV-QEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAV-----EKVITK 426 (568)
Q Consensus 353 GnVG~~~A~~L~-~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl-----~~~It~ 426 (568)
|++|..+|+.|. ..|++|++..-. .+.+.. .. .+.+..+-++++ ..|||++.+.- .+.|++
T Consensus 154 G~IG~~va~~l~~~fgm~V~~~~~~-~~~~~~----~~-------~~~~~~~l~ell-~~sDvv~lh~plt~~T~~li~~ 220 (323)
T PRK15409 154 GRIGMALAQRAHFGFNMPILYNARR-HHKEAE----ER-------FNARYCDLDTLL-QESDFVCIILPLTDETHHLFGA 220 (323)
T ss_pred cHHHHHHHHHHHhcCCCEEEEECCC-CchhhH----Hh-------cCcEecCHHHHH-HhCCEEEEeCCCChHHhhccCH
Confidence 999999999997 899999874322 111110 11 133334444554 58999988653 457777
Q ss_pred hhHhccc-ceEEEecCCcch--HHHHHHHh
Q psy8846 427 NNAHKIQ-AKIIAEAANESV--QESLERRF 453 (568)
Q Consensus 427 ~na~~i~-AkiIvE~AN~~~--~~~l~~~l 453 (568)
+...++| -.+++.-|-+++ .+.|.+.|
T Consensus 221 ~~l~~mk~ga~lIN~aRG~vVde~AL~~AL 250 (323)
T PRK15409 221 EQFAKMKSSAIFINAGRGPVVDENALIAAL 250 (323)
T ss_pred HHHhcCCCCeEEEECCCccccCHHHHHHHH
Confidence 7777776 467787888775 23454444
No 111
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=39.65 E-value=48 Score=34.80 Aligned_cols=86 Identities=16% Similarity=0.132 Sum_probs=50.4
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCC------CeecC-CCCcccccceEEeeccccCCCC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPG------AVPYE-GENLMYEPCDIFVPAAVEKVIT 425 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~g------a~~i~-~~~ll~~~cDIliPaAl~~~It 425 (568)
|++|..+|..|.+.|..|..+ +-+.+.+............+++ ....+ .++.+ .+||+++-|.-...+
T Consensus 13 G~mG~~ia~~L~~~G~~V~~~---~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~-~~aD~Vi~~v~~~~~- 87 (328)
T PRK14618 13 GAWGTALAVLAASKGVPVRLW---ARRPEFAAALAAERENREYLPGVALPAELYPTADPEEAL-AGADFAVVAVPSKAL- 87 (328)
T ss_pred CHHHHHHHHHHHHCCCeEEEE---eCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH-cCCCEEEEECchHHH-
Confidence 999999999999999988763 3455555554432211111122 22221 12222 579999888666543
Q ss_pred hhhHhccc-ceEEEecCCc
Q psy8846 426 KNNAHKIQ-AKIIAEAANE 443 (568)
Q Consensus 426 ~~na~~i~-AkiIvE~AN~ 443 (568)
.+..+.++ -.+|+.-+|+
T Consensus 88 ~~v~~~l~~~~~vi~~~~G 106 (328)
T PRK14618 88 RETLAGLPRALGYVSCAKG 106 (328)
T ss_pred HHHHHhcCcCCEEEEEeec
Confidence 55556554 2466666773
No 112
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=38.82 E-value=1.2e+02 Score=31.78 Aligned_cols=102 Identities=15% Similarity=0.162 Sum_probs=61.0
Q ss_pred cCHHHHHHHHHHHCCC---eEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccccCCCChhhH
Q psy8846 353 GPVSMYLPQIWVQEKG---KCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNA 429 (568)
Q Consensus 353 GnVG~~~A~~L~~~Ga---kvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~~It~~na 429 (568)
||+|..++.-|.+.|. .-|-|++. +.+.+.+..++.|.. ..++.+-+..++|+++.|--... =++..
T Consensus 10 G~Mg~Ai~~gl~~~g~~~~~~I~v~~~--~~e~~~~l~~~~g~~-------~~~~~~~~~~~advv~LavKPq~-~~~vl 79 (266)
T COG0345 10 GNMGEAILSGLLKSGALPPEEIIVTNR--SEEKRAALAAEYGVV-------TTTDNQEAVEEADVVFLAVKPQD-LEEVL 79 (266)
T ss_pred CHHHHHHHHHHHhcCCCCcceEEEeCC--CHHHHHHHHHHcCCc-------ccCcHHHHHhhCCEEEEEeChHh-HHHHH
Confidence 9999999999999993 34444544 666666555554322 23333456678999999865543 34555
Q ss_pred hccc----ceEEEecCCcchHHHHHHHhccCCCcccccCc
Q psy8846 430 HKIQ----AKIIAEAANESVQESLERRFGNVGGRIPVTPS 465 (568)
Q Consensus 430 ~~i~----AkiIvE~AN~~~~~~l~~~l~~~GggI~vvPd 465 (568)
.+++ -++|+.-|=+--.+.|++.|...- -+-++|.
T Consensus 80 ~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~-vvR~MPN 118 (266)
T COG0345 80 SKLKPLTKDKLVISIAAGVSIETLERLLGGLR-VVRVMPN 118 (266)
T ss_pred HHhhcccCCCEEEEEeCCCCHHHHHHHcCCCc-eEEeCCC
Confidence 5554 566665554433444555543221 2445665
No 113
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=38.54 E-value=1.2e+02 Score=32.51 Aligned_cols=75 Identities=15% Similarity=0.054 Sum_probs=46.3
Q ss_pred cCHHHHHHHHHHHCC----CeEeEeCCCCCCHHHHHHHHHhcCCccc-CCCC------------ee---c---CCC--Cc
Q psy8846 353 GPVSMYLPQIWVQEK----GKCPGLPTHTRKPLALEEYKLDNGTIVG-FPGA------------VP---Y---EGE--NL 407 (568)
Q Consensus 353 GnVG~~~A~~L~~~G----akvvaVsD~GiD~~~L~~~~~~~g~v~~-~~ga------------~~---i---~~~--~l 407 (568)
|.+|+.+.+.|.+.+ ..|++|.|. ...+...|..+++++-+ |++. +. . +++ .|
T Consensus 8 GrIGR~vlr~l~e~~~~~~~~vvaInd~--~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p~~~~w 85 (325)
T TIGR01532 8 GRIGRNVLRALYESGERLGIEVVALNEL--ADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPTPEALPW 85 (325)
T ss_pred CHHHHHHHHHHHhcCCCCCeEEEEEecC--CCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCChhhccc
Confidence 899999999998864 899999874 33445567667666543 3211 11 1 111 12
Q ss_pred ccccceEEeeccccCCCChhhHh
Q psy8846 408 MYEPCDIFVPAAVEKVITKNNAH 430 (568)
Q Consensus 408 l~~~cDIliPaAl~~~It~~na~ 430 (568)
-+.++||.+=|+-.. .+.+.+.
T Consensus 86 ~~~gvDiVie~tG~~-~s~e~a~ 107 (325)
T TIGR01532 86 RALGVDLVLDCTGVY-GNREQGE 107 (325)
T ss_pred cccCCCEEEEccchh-ccHHHHH
Confidence 236788888876543 5555554
No 114
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=38.38 E-value=28 Score=35.13 Aligned_cols=26 Identities=4% Similarity=0.123 Sum_probs=23.2
Q ss_pred eeec----cCHHHHHHHHHHHCCCeEeEeC
Q psy8846 349 KFSS----GPVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 349 R~~~----GnVG~~~A~~L~~~GakvvaVs 374 (568)
||+. |.+|+++|+.|.+.|++|++++
T Consensus 18 R~itN~SSG~iG~aLA~~L~~~G~~V~li~ 47 (229)
T PRK06732 18 RGITNHSTGQLGKIIAETFLAAGHEVTLVT 47 (229)
T ss_pred eeecCccchHHHHHHHHHHHhCCCEEEEEE
Confidence 5554 9999999999999999999985
No 115
>PRK08265 short chain dehydrogenase; Provisional
Probab=38.18 E-value=29 Score=34.65 Aligned_cols=34 Identities=3% Similarity=-0.098 Sum_probs=26.2
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLD 389 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~ 389 (568)
|-+|.++|+.|.+.|++|+.+ +.+.+.+.+..++
T Consensus 16 ~gIG~~ia~~l~~~G~~V~~~---~r~~~~~~~~~~~ 49 (261)
T PRK08265 16 TLIGAAVARALVAAGARVAIV---DIDADNGAAVAAS 49 (261)
T ss_pred ChHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHH
Confidence 789999999999999998874 3455556555444
No 116
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=37.95 E-value=30 Score=34.40 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=25.9
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLD 389 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~ 389 (568)
|.+|+++|+.|++.|++|+.++ .+.+.+.+....
T Consensus 15 ~gIG~~ia~~l~~~G~~V~~~~---r~~~~~~~l~~~ 48 (262)
T TIGR03325 15 SGLGRAIVDRFVAEGARVAVLD---KSAAGLQELEAA 48 (262)
T ss_pred ChHHHHHHHHHHHCCCEEEEEe---CCHHHHHHHHhh
Confidence 7899999999999999998853 455555555443
No 117
>PRK05872 short chain dehydrogenase; Provisional
Probab=37.80 E-value=34 Score=35.06 Aligned_cols=34 Identities=9% Similarity=-0.001 Sum_probs=27.6
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLD 389 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~ 389 (568)
|.+|.++|+.|++.|++|+.+ +.+.+.+.+..++
T Consensus 19 ~gIG~~ia~~l~~~G~~V~~~---~r~~~~l~~~~~~ 52 (296)
T PRK05872 19 RGIGAELARRLHARGAKLALV---DLEEAELAALAAE 52 (296)
T ss_pred chHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHH
Confidence 789999999999999998874 4677777666554
No 118
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=36.51 E-value=62 Score=36.77 Aligned_cols=34 Identities=12% Similarity=0.058 Sum_probs=28.2
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLD 389 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~ 389 (568)
|++|+++|+.|.+.|..++.| +-|.+++.+.++.
T Consensus 426 G~~G~~la~~L~~~g~~vvvI---d~d~~~~~~~~~~ 459 (558)
T PRK10669 426 GRVGSLLGEKLLAAGIPLVVI---ETSRTRVDELRER 459 (558)
T ss_pred ChHHHHHHHHHHHCCCCEEEE---ECCHHHHHHHHHC
Confidence 999999999999999998874 4577887777653
No 119
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=36.33 E-value=29 Score=34.23 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=25.6
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKL 388 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~ 388 (568)
|.+|.++|+.|.+.|++|+.++ .+.+.+.+...
T Consensus 10 g~iG~~la~~l~~~G~~V~~~~---r~~~~~~~~~~ 42 (248)
T PRK10538 10 AGFGECITRRFIQQGHKVIATG---RRQERLQELKD 42 (248)
T ss_pred chHHHHHHHHHHHCCCEEEEEE---CCHHHHHHHHH
Confidence 7899999999999999998854 35555555444
No 120
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=36.15 E-value=46 Score=35.40 Aligned_cols=59 Identities=7% Similarity=-0.066 Sum_probs=37.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccccC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEK 422 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~ 422 (568)
||.|...|+.|.+.|.+++...+. +.+.+.+.. +. |.+..+.++.. .+|||++-|.-..
T Consensus 12 G~mG~AiA~~L~~sG~~Viv~~~~--~~~~~~~a~-~~-------Gv~~~s~~ea~-~~ADiVvLaVpp~ 70 (314)
T TIGR00465 12 GSQGHAQALNLRDSGLNVIVGLRK--GGASWKKAT-ED-------GFKVGTVEEAI-PQADLIMNLLPDE 70 (314)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECc--ChhhHHHHH-HC-------CCEECCHHHHH-hcCCEEEEeCCcH
Confidence 999999999999999887654433 123333332 22 22333333333 6799999887654
No 121
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=35.35 E-value=37 Score=34.21 Aligned_cols=26 Identities=4% Similarity=0.144 Sum_probs=22.9
Q ss_pred eeec----cCHHHHHHHHHHHCCCeEeEeC
Q psy8846 349 KFSS----GPVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 349 R~~~----GnVG~~~A~~L~~~GakvvaVs 374 (568)
||+. |.+|.++|+.|.+.|++|+.++
T Consensus 17 R~itN~SSGgIG~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 17 RSITNHSTGHLGKIITETFLSAGHEVTLVT 46 (227)
T ss_pred eeecCCcccHHHHHHHHHHHHCCCEEEEEc
Confidence 5554 8999999999999999999875
No 122
>PRK08263 short chain dehydrogenase; Provisional
Probab=35.32 E-value=33 Score=34.46 Aligned_cols=34 Identities=6% Similarity=0.029 Sum_probs=26.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLD 389 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~ 389 (568)
|-+|+++|+.|.+.|++|+.++ .+.+.+.+..+.
T Consensus 13 g~iG~~~a~~l~~~g~~V~~~~---r~~~~~~~~~~~ 46 (275)
T PRK08263 13 RGFGRAWTEAALERGDRVVATA---RDTATLADLAEK 46 (275)
T ss_pred ChHHHHHHHHHHHCCCEEEEEE---CCHHHHHHHHHh
Confidence 7899999999999999988743 455566555443
No 123
>COG3234 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.27 E-value=24 Score=34.71 Aligned_cols=31 Identities=35% Similarity=0.444 Sum_probs=27.3
Q ss_pred eeEEEEecCCCCCCCCCeeeeCCCCHHHHHHHHHHhhHhh
Q psy8846 242 TGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKC 281 (568)
Q Consensus 242 ~gyrv~h~~~~GP~kGGiR~~p~v~~dev~aLA~~MT~K~ 281 (568)
-+|.+-|.-..++.-||+|+ ..|+.+||||-
T Consensus 163 gr~i~YHTG~~t~td~gmR~---------V~~~qLm~wkD 193 (215)
T COG3234 163 GRYIAYHTGSATKTDNGMRA---------VSLQQLMTWKD 193 (215)
T ss_pred cceEEEeccCCCCCCCceee---------EEHHHhhccCC
Confidence 37889999999999999998 56889999985
No 124
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.06 E-value=54 Score=32.85 Aligned_cols=36 Identities=8% Similarity=-0.084 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHh
Q psy8846 354 PVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLD 389 (568)
Q Consensus 354 nVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~ 389 (568)
.+|..+|+.|++.|++|+.+.-..-+.+.+.+..++
T Consensus 20 GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~ 55 (257)
T PRK08594 20 SIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADT 55 (257)
T ss_pred CHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHH
Confidence 599999999999999988753222234556655544
No 125
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=34.81 E-value=1e+02 Score=30.56 Aligned_cols=91 Identities=10% Similarity=0.053 Sum_probs=54.2
Q ss_pred cCHHHHHHHHHHHCCC---e-EeEeCCCCCCHHHHHHHHHhcCCcccCCCCeec-CCCCcccccceEEeeccccCCCChh
Q psy8846 353 GPVSMYLPQIWVQEKG---K-CPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPY-EGENLMYEPCDIFVPAAVEKVITKN 427 (568)
Q Consensus 353 GnVG~~~A~~L~~~Ga---k-vvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i-~~~~ll~~~cDIliPaAl~~~It~~ 427 (568)
|++|...++.|.+.|. + ++++.+. +.+++.++.++.+ .... +.++++ .+||+++-|.-... ..+
T Consensus 13 G~mg~ala~~l~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~DiViiavp~~~-~~~ 81 (245)
T PRK07634 13 GRMAEAIFSGLLKTSKEYIEEIIVSNRS--NVEKLDQLQARYN-------VSTTTDWKQHV-TSVDTIVLAMPPSA-HEE 81 (245)
T ss_pred CHHHHHHHHHHHhCCCCCcCeEEEECCC--CHHHHHHHHHHcC-------cEEeCChHHHH-hcCCEEEEecCHHH-HHH
Confidence 9999999999988763 3 4444332 4566666555432 2222 223444 47999998855443 344
Q ss_pred hHhcc----cceEEEecCCcchHHHHHHHhc
Q psy8846 428 NAHKI----QAKIIAEAANESVQESLERRFG 454 (568)
Q Consensus 428 na~~i----~AkiIvE~AN~~~~~~l~~~l~ 454 (568)
.+..+ +-++|+-.+.+--.+.|++.+.
T Consensus 82 v~~~l~~~~~~~~vis~~~gi~~~~l~~~~~ 112 (245)
T PRK07634 82 LLAELSPLLSNQLVVTVAAGIGPSYLEERLP 112 (245)
T ss_pred HHHHHHhhccCCEEEEECCCCCHHHHHHHcC
Confidence 44443 3467777766554556666653
No 126
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=34.77 E-value=31 Score=33.81 Aligned_cols=22 Identities=0% Similarity=-0.150 Sum_probs=20.2
Q ss_pred cCHHHHHHHHHHHCCCeEeEeC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVs 374 (568)
|.+|.++++.|.+.|++|+.++
T Consensus 10 g~iG~~la~~l~~~G~~v~~~~ 31 (254)
T TIGR02415 10 QGIGKGIAERLAKDGFAVAVAD 31 (254)
T ss_pred chHHHHHHHHHHHCCCEEEEEe
Confidence 7899999999999999998864
No 127
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=34.43 E-value=59 Score=30.48 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=57.4
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCee-----cCCC--CcccccceEEeeccccCCCC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVP-----YEGE--NLMYEPCDIFVPAAVEKVIT 425 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~-----i~~~--~ll~~~cDIliPaAl~~~It 425 (568)
||.|.++|..|++.|..|.- .+.|.+.+....+.+.....+++.+. ++.| +.+ .++|+++-|- .-.-.
T Consensus 8 G~~G~AlA~~la~~g~~V~l---~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~-~~ad~Iiiav-Ps~~~ 82 (157)
T PF01210_consen 8 GNWGTALAALLADNGHEVTL---WGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEAL-EDADIIIIAV-PSQAH 82 (157)
T ss_dssp SHHHHHHHHHHHHCTEEEEE---ETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHH-TT-SEEEE-S--GGGH
T ss_pred CHHHHHHHHHHHHcCCEEEE---EeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHh-CcccEEEecc-cHHHH
Confidence 99999999999999988876 56788777777665543333444321 2222 222 4789888763 33334
Q ss_pred hhhHhcccc-----eEEEecC-------CcchHHHHHHHhccC
Q psy8846 426 KNNAHKIQA-----KIIAEAA-------NESVQESLERRFGNV 456 (568)
Q Consensus 426 ~~na~~i~A-----kiIvE~A-------N~~~~~~l~~~l~~~ 456 (568)
.+.+.+|+- .+|+-.. .....+.+++.+...
T Consensus 83 ~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~ 125 (157)
T PF01210_consen 83 REVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIP 125 (157)
T ss_dssp HHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSC
T ss_pred HHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhc
Confidence 566666642 2333221 122467777766553
No 128
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=34.06 E-value=53 Score=35.03 Aligned_cols=78 Identities=12% Similarity=0.155 Sum_probs=46.9
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCC--CCCHHHH--HHHH--------HhcCCcccCCC----CeecCCCCcccccceEEe
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTH--TRKPLAL--EEYK--------LDNGTIVGFPG----AVPYEGENLMYEPCDIFV 416 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~--GiD~~~L--~~~~--------~~~g~v~~~~g----a~~i~~~~ll~~~cDIli 416 (568)
|-.|+++|++|.+.|+.|.|+.-. -.+...+ .+.. -.+|.+.++.. -+.+.++||+.+-+--+|
T Consensus 12 GQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~PdEIYNLaAQS~V 91 (345)
T COG1089 12 GQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPDEIYNLAAQSHV 91 (345)
T ss_pred CCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCchhheeccccccc
Confidence 899999999999999999997632 2233321 1100 01122222211 112457888888888888
Q ss_pred eccccCCCChhhHh
Q psy8846 417 PAAVEKVITKNNAH 430 (568)
Q Consensus 417 PaAl~~~It~~na~ 430 (568)
|...+.-...-++.
T Consensus 92 ~vSFe~P~~T~~~~ 105 (345)
T COG1089 92 GVSFEQPEYTADVD 105 (345)
T ss_pred cccccCcceeeeec
Confidence 88776644443333
No 129
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=34.05 E-value=1.3e+02 Score=34.15 Aligned_cols=80 Identities=14% Similarity=0.116 Sum_probs=52.6
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeec-CCCCcccccceEEeecc-----ccCCCCh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPY-EGENLMYEPCDIFVPAA-----VEKVITK 426 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i-~~~~ll~~~cDIliPaA-----l~~~It~ 426 (568)
|++|+.+|+.|...|++|++..-. .+.+.. .+. +.+.+ +.++++ ..||+++-|. ..+.|++
T Consensus 147 G~IG~~vA~~l~~fG~~V~~~d~~-~~~~~~----~~~-------g~~~~~~l~ell-~~aDvV~l~lPlt~~T~~li~~ 213 (525)
T TIGR01327 147 GRIGSIVAKRAKAFGMKVLAYDPY-ISPERA----EQL-------GVELVDDLDELL-ARADFITVHTPLTPETRGLIGA 213 (525)
T ss_pred CHHHHHHHHHHHhCCCEEEEECCC-CChhHH----Hhc-------CCEEcCCHHHHH-hhCCEEEEccCCChhhccCcCH
Confidence 999999999999999999985422 222211 111 33333 234555 4799998765 3567887
Q ss_pred hhHhccc-ceEEEecCCcch
Q psy8846 427 NNAHKIQ-AKIIAEAANESV 445 (568)
Q Consensus 427 ~na~~i~-AkiIvE~AN~~~ 445 (568)
+....++ -.+++.-|-+++
T Consensus 214 ~~l~~mk~ga~lIN~aRG~~ 233 (525)
T TIGR01327 214 EELAKMKKGVIIVNCARGGI 233 (525)
T ss_pred HHHhcCCCCeEEEEcCCCce
Confidence 7777775 357777777664
No 130
>PRK09242 tropinone reductase; Provisional
Probab=33.96 E-value=33 Score=33.94 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=24.1
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEY 386 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~ 386 (568)
|.+|+++++.|.+.|++|+.++ .+.+.+.+.
T Consensus 19 ~gIG~~~a~~l~~~G~~v~~~~---r~~~~~~~~ 49 (257)
T PRK09242 19 KGIGLAIAREFLGLGADVLIVA---RDADALAQA 49 (257)
T ss_pred chHHHHHHHHHHHcCCEEEEEe---CCHHHHHHH
Confidence 7899999999999999998854 345554443
No 131
>PRK07454 short chain dehydrogenase; Provisional
Probab=33.72 E-value=31 Score=33.70 Aligned_cols=30 Identities=13% Similarity=0.036 Sum_probs=23.6
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEE 385 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~ 385 (568)
|.+|..+++.|.+.|++|+.++ .+.+.+.+
T Consensus 16 g~iG~~la~~l~~~G~~V~~~~---r~~~~~~~ 45 (241)
T PRK07454 16 SGIGKATALAFAKAGWDLALVA---RSQDALEA 45 (241)
T ss_pred chHHHHHHHHHHHCCCEEEEEe---CCHHHHHH
Confidence 8899999999999999988854 34444443
No 132
>PRK06482 short chain dehydrogenase; Provisional
Probab=33.39 E-value=40 Score=33.75 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=25.9
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLD 389 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~ 389 (568)
|.+|+++|+.|.+.|++|++++ -+.+.+.+....
T Consensus 12 g~IG~~la~~L~~~g~~v~~~~---r~~~~~~~~~~~ 45 (276)
T PRK06482 12 SGFGRGMTERLLARGDRVAATV---RRPDALDDLKAR 45 (276)
T ss_pred CHHHHHHHHHHHHCCCEEEEEe---CCHHHHHHHHHh
Confidence 8999999999999999998854 345555554443
No 133
>PRK05993 short chain dehydrogenase; Provisional
Probab=33.19 E-value=33 Score=34.62 Aligned_cols=32 Identities=9% Similarity=0.073 Sum_probs=25.1
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYK 387 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~ 387 (568)
|.+|.++|+.|++.|++|++++ -+.+.+.+..
T Consensus 14 ggiG~~la~~l~~~G~~Vi~~~---r~~~~~~~l~ 45 (277)
T PRK05993 14 SGIGAYCARALQSDGWRVFATC---RKEEDVAALE 45 (277)
T ss_pred cHHHHHHHHHHHHCCCEEEEEE---CCHHHHHHHH
Confidence 7899999999999999998853 4555555443
No 134
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=32.63 E-value=70 Score=36.46 Aligned_cols=86 Identities=16% Similarity=0.164 Sum_probs=51.5
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCC----------CeecCCCCc------cc---ccce
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPG----------AVPYEGENL------MY---EPCD 413 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~g----------a~~i~~~~l------l~---~~cD 413 (568)
|.+|..++..+...|++|++ .+.+.+++.....-......++- ++.++.+.. +. .+||
T Consensus 173 G~iGl~Aa~~ak~lGA~V~v---~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~D 249 (511)
T TIGR00561 173 GVAGLAAIGAANSLGAIVRA---FDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVD 249 (511)
T ss_pred CHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999776 34466665554432111111110 222322211 22 5799
Q ss_pred EEeeccc------cCCCChhhHhcccc-eEEEecC
Q psy8846 414 IFVPAAV------EKVITKNNAHKIQA-KIIAEAA 441 (568)
Q Consensus 414 IliPaAl------~~~It~~na~~i~A-kiIvE~A 441 (568)
|+|=|++ ...||++-...+|. .+|++-|
T Consensus 250 IVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 250 IIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred EEEECcccCCCCCCeeehHHHHhhCCCCCEEEEee
Confidence 9999882 22488888888862 3455433
No 135
>PRK06813 homoserine dehydrogenase; Validated
Probab=32.60 E-value=43 Score=36.19 Aligned_cols=147 Identities=14% Similarity=0.132 Sum_probs=73.6
Q ss_pred cCHHHHHHHHHHHC--------C--CeEeEeCCC--------CCCHHHHHHHHHhcCCcccCCCCeecCCCCcc--cccc
Q psy8846 353 GPVSMYLPQIWVQE--------K--GKCPGLPTH--------TRKPLALEEYKLDNGTIVGFPGAVPYEGENLM--YEPC 412 (568)
Q Consensus 353 GnVG~~~A~~L~~~--------G--akvvaVsD~--------GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll--~~~c 412 (568)
|+||+.+++.|.+. | .+|++|+|+ |+|.+.+.+.......+..|.. ...++++ ..+.
T Consensus 11 G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 87 (346)
T PRK06813 11 GTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIE---HHPEERATDNISG 87 (346)
T ss_pred ChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhc---cChHHHhcCCCCC
Confidence 99999999998653 2 568899886 8887765443221111111110 0112232 2368
Q ss_pred eEEeeccccCCCChhhHhc-----ccceEEEecCCcch----HHHHHHH--------h--ccCCCcccccCcHHHHhh--
Q psy8846 413 DIFVPAAVEKVITKNNAHK-----IQAKIIAEAANESV----QESLERR--------F--GNVGGRIPVTPSESFQKR-- 471 (568)
Q Consensus 413 DIliPaAl~~~It~~na~~-----i~AkiIvE~AN~~~----~~~l~~~--------l--~~~GggI~vvPde~~q~~-- 471 (568)
||+|=|--.+..+.+-+.. |++..=|=-||-.+ -+.|.+. + +.-|+|++|+--- +..
T Consensus 88 dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggGiPiI~~l--~~~~~ 165 (346)
T PRK06813 88 TVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAALPTLDIG--QFSLA 165 (346)
T ss_pred CEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeeccchHHHH--hhhcc
Confidence 9999885433333333332 34444333678442 1222221 1 2345566655331 111
Q ss_pred ------ccC--CCcHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy8846 472 ------ISG--ASEKDIVHSGLDYTMERSARAIMKTAMKYNL 505 (568)
Q Consensus 472 ------~~~--~we~e~V~~~L~~~M~~a~~~V~~~a~~~~~ 505 (568)
+.| --+-..+..++.+ -..+|.+++..|++.++
T Consensus 166 g~~I~~i~GIlNGT~NyIL~~m~~-~g~~f~eal~~Aq~lGy 206 (346)
T PRK06813 166 GCHIEKIEGILNGTTNYILTKMNE-EDITFEEALKEAQSKGI 206 (346)
T ss_pred cCcEEEEEEEEechHHHHHhhhhh-cCCCHHHHHHHHHHcCC
Confidence 111 0233344444431 12368888889988664
No 136
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=32.46 E-value=36 Score=34.75 Aligned_cols=24 Identities=4% Similarity=-0.137 Sum_probs=22.1
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTH 376 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~ 376 (568)
|-+|+|+++.|.+.|.++|++.|.
T Consensus 9 GfiG~~l~~~L~~~g~~~v~~~~~ 32 (308)
T PRK11150 9 GFIGSNIVKALNDKGITDILVVDN 32 (308)
T ss_pred cHHHHHHHHHHHhCCCceEEEecC
Confidence 899999999999999988888776
No 137
>PRK08267 short chain dehydrogenase; Provisional
Probab=32.41 E-value=63 Score=31.96 Aligned_cols=34 Identities=6% Similarity=0.047 Sum_probs=27.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLD 389 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~ 389 (568)
|.+|.++++.|++.|++|+.+ +-+.+.+.+....
T Consensus 11 g~iG~~la~~l~~~G~~V~~~---~r~~~~~~~~~~~ 44 (260)
T PRK08267 11 SGIGRATALLFAAEGWRVGAY---DINEAGLAALAAE 44 (260)
T ss_pred chHHHHHHHHHHHCCCeEEEE---eCCHHHHHHHHHH
Confidence 789999999999999999885 3566666665543
No 138
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=31.96 E-value=72 Score=35.87 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=18.8
Q ss_pred HHHHHHHHHCCCeEeEeCCCCCCHHHHHH
Q psy8846 357 MYLPQIWVQEKGKCPGLPTHTRKPLALEE 385 (568)
Q Consensus 357 ~~~A~~L~~~GakvvaVsD~GiD~~~L~~ 385 (568)
+.+|+.|+++|.+|-| |++.....-+
T Consensus 21 sglA~iL~~~G~~VsG---SD~~~~~~t~ 46 (459)
T COG0773 21 SGLAEILLNLGYKVSG---SDLAESPMTQ 46 (459)
T ss_pred HHHHHHHHhCCCceEC---ccccccHHHH
Confidence 6789999999999977 5554443333
No 139
>PLN02700 homoserine dehydrogenase family protein
Probab=31.74 E-value=34 Score=37.46 Aligned_cols=154 Identities=16% Similarity=0.145 Sum_probs=80.5
Q ss_pred cCHHHHHHHHHHHC-------C--CeEeEeCCC------------CCCHHHHHHHH---HhcCCcccCCC----------
Q psy8846 353 GPVSMYLPQIWVQE-------K--GKCPGLPTH------------TRKPLALEEYK---LDNGTIVGFPG---------- 398 (568)
Q Consensus 353 GnVG~~~A~~L~~~-------G--akvvaVsD~------------GiD~~~L~~~~---~~~g~v~~~~g---------- 398 (568)
||||+.+++.|.+. | .+|++|+|+ |||.+.+.+.. .+.+.+..|+.
T Consensus 12 G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (377)
T PLN02700 12 GGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALGALAGGCQVFNN 91 (377)
T ss_pred ChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhhhcccccccccc
Confidence 99999999987542 3 578999997 68888876633 33333433311
Q ss_pred -Cee---cCCCCcc-cccceEEeeccccCCCChhhHh-cccceEEEecCCcch-----HH--HHHHH----h--ccCCCc
Q psy8846 399 -AVP---YEGENLM-YEPCDIFVPAAVEKVITKNNAH-KIQAKIIAEAANESV-----QE--SLERR----F--GNVGGR 459 (568)
Q Consensus 399 -a~~---i~~~~ll-~~~cDIliPaAl~~~It~~na~-~i~AkiIvE~AN~~~-----~~--~l~~~----l--~~~Ggg 459 (568)
+.+ ++..+.+ ..+.+|+|=|.-...+ .+... -++..+=|=.||-.+ ++ .|.+. + ..-|+|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~ViVD~T~s~~~-~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~~~~~~~yEatVgaG 170 (377)
T PLN02700 92 SELSRKVIDIATLLGKSTGLVVVDCSASMET-IGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAAHPRRIRHESTVGAG 170 (377)
T ss_pred ccccchhhhHHHHhhccCCCEEEECCCChHH-HHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHHcCCeEEEEeeeeec
Confidence 000 1111222 3456888887554222 22222 234444444678432 11 12221 1 233445
Q ss_pred ccccCcHHHHhhc---------cC--CCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChh
Q psy8846 460 IPVTPSESFQKRI---------SG--ASEKDIVHSGLDYTMERSARAIMKTAMKYNLGHLDIN 511 (568)
Q Consensus 460 I~vvPde~~q~~~---------~~--~we~e~V~~~L~~~M~~a~~~V~~~a~~~~~~~~dlR 511 (568)
++|+-. .++.. .| --+-.-+.+++++ ..+|.+++..|++.++---|+|
T Consensus 171 lPiI~t--l~~ll~sGd~I~~I~GIlnGT~nyIl~~m~~--g~~fseal~eAq~~GyaEpDP~ 229 (377)
T PLN02700 171 LPVIAS--LNRILSSGDPVHRIVGSLSGTLGYVMSELED--GKPFSEVVKQAKSLGYTEPDPR 229 (377)
T ss_pred cchHHH--HHHHhhccCCEEEEEEEEeChHHHHHHHHhc--CCCHHHHHHHHHHcCCCCCCCc
Confidence 554432 12221 11 1245557777753 5679999999999774322443
No 140
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=31.60 E-value=32 Score=34.93 Aligned_cols=32 Identities=13% Similarity=-0.017 Sum_probs=25.1
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCC-CCHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHT-RKPLALE 384 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~G-iD~~~L~ 384 (568)
|-||+++|+.|++.|..=+.+.|.+ ++...|.
T Consensus 20 GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNln 52 (231)
T cd00755 20 GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLN 52 (231)
T ss_pred CHHHHHHHHHHHHcCCCEEEEECCCEECchhhc
Confidence 9999999999999998777777773 3444443
No 141
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=31.53 E-value=40 Score=36.32 Aligned_cols=70 Identities=7% Similarity=-0.062 Sum_probs=42.7
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccc----cCCCChhh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAV----EKVITKNN 428 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl----~~~It~~n 428 (568)
|+.|...|+.|...|.+|++..+.+-+. +..... |.+..+.++++ ..|||++.+.- .++++++-
T Consensus 25 GsIG~amA~nL~d~G~~ViV~~r~~~s~----~~A~~~-------G~~v~sl~Eaa-k~ADVV~llLPd~~t~~V~~~ei 92 (335)
T PRK13403 25 GSQGHAQAQNLRDSGVEVVVGVRPGKSF----EVAKAD-------GFEVMSVSEAV-RTAQVVQMLLPDEQQAHVYKAEV 92 (335)
T ss_pred cHHHHHHHHHHHHCcCEEEEEECcchhh----HHHHHc-------CCEECCHHHHH-hcCCEEEEeCCChHHHHHHHHHH
Confidence 9999999999999999998743332111 111121 33433444444 46898887753 34555555
Q ss_pred Hhcccc
Q psy8846 429 AHKIQA 434 (568)
Q Consensus 429 a~~i~A 434 (568)
++.++.
T Consensus 93 l~~MK~ 98 (335)
T PRK13403 93 EENLRE 98 (335)
T ss_pred HhcCCC
Confidence 666653
No 142
>PRK04148 hypothetical protein; Provisional
Probab=31.48 E-value=55 Score=30.75 Aligned_cols=33 Identities=12% Similarity=-0.087 Sum_probs=27.7
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLD 389 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~ 389 (568)
| -|.++|..|++.|..|+| .++|..++...+..
T Consensus 26 G-fG~~vA~~L~~~G~~Via---IDi~~~aV~~a~~~ 58 (134)
T PRK04148 26 G-FYFKVAKKLKESGFDVIV---IDINEKAVEKAKKL 58 (134)
T ss_pred c-CCHHHHHHHHHCCCEEEE---EECCHHHHHHHHHh
Confidence 8 788899999999999999 57888887766554
No 143
>PRK07062 short chain dehydrogenase; Provisional
Probab=31.21 E-value=36 Score=33.78 Aligned_cols=31 Identities=6% Similarity=0.030 Sum_probs=24.1
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEY 386 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~ 386 (568)
|.+|.++|+.|.+.|++|+.++ .+.+++.+.
T Consensus 18 ~giG~~ia~~l~~~G~~V~~~~---r~~~~~~~~ 48 (265)
T PRK07062 18 SGIGLATVELLLEAGASVAICG---RDEERLASA 48 (265)
T ss_pred chHHHHHHHHHHHCCCeEEEEe---CCHHHHHHH
Confidence 7899999999999999998743 455555443
No 144
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=30.94 E-value=18 Score=37.47 Aligned_cols=85 Identities=14% Similarity=0.112 Sum_probs=46.9
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCC-CCCHHHHHHHHHhcCCcccCCCCeecCCCCc--ccccceEEeeccccCCCChhhH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTH-TRKPLALEEYKLDNGTIVGFPGAVPYEGENL--MYEPCDIFVPAAVEKVITKNNA 429 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~-GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~l--l~~~cDIliPaAl~~~It~~na 429 (568)
|-||+|+++.|++.|..=+.+.|. .+++..+.++.-...+-.|-|.++.+. +.+ ..=.|.|- ++..-+|++|.
T Consensus 39 GGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~-eri~~InP~c~V~---~~~~f~t~en~ 114 (263)
T COG1179 39 GGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMK-ERIKQINPECEVT---AINDFITEENL 114 (263)
T ss_pred CchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHH-HHHHhhCCCceEe---ehHhhhCHhHH
Confidence 999999999999999877777777 666655544332111111112222110 011 12234443 45566777777
Q ss_pred hccc---ceEEEecC
Q psy8846 430 HKIQ---AKIIAEAA 441 (568)
Q Consensus 430 ~~i~---AkiIvE~A 441 (568)
+.+- --+|+++-
T Consensus 115 ~~~~~~~~DyvIDai 129 (263)
T COG1179 115 EDLLSKGFDYVIDAI 129 (263)
T ss_pred HHHhcCCCCEEEEch
Confidence 7663 33555554
No 145
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=30.64 E-value=64 Score=35.55 Aligned_cols=103 Identities=14% Similarity=0.075 Sum_probs=59.1
Q ss_pred cCHHHHHHHHHHHCC-CeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCC------CCcccccceEEeeccccCCCC
Q psy8846 353 GPVSMYLPQIWVQEK-GKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEG------ENLMYEPCDIFVPAAVEKVIT 425 (568)
Q Consensus 353 GnVG~~~A~~L~~~G-akvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~------~~ll~~~cDIliPaAl~~~It 425 (568)
|+||+.+|+.|++.| .+|.. ++-..+.+.+..+..+. .. .+..++- .+++. +.|+.|=|+... ++
T Consensus 10 G~Vg~~va~~la~~~d~~V~i---AdRs~~~~~~i~~~~~~--~v-~~~~vD~~d~~al~~li~-~~d~VIn~~p~~-~~ 81 (389)
T COG1748 10 GGVGSVVAHKLAQNGDGEVTI---ADRSKEKCARIAELIGG--KV-EALQVDAADVDALVALIK-DFDLVINAAPPF-VD 81 (389)
T ss_pred chhHHHHHHHHHhCCCceEEE---EeCCHHHHHHHHhhccc--cc-eeEEecccChHHHHHHHh-cCCEEEEeCCch-hh
Confidence 999999999999999 77766 34577777777665432 00 1112221 12333 448888886654 34
Q ss_pred hhhH-hcccceE-EEecCCcchH-HHHHHHhccCCCcccccCc
Q psy8846 426 KNNA-HKIQAKI-IAEAANESVQ-ESLERRFGNVGGRIPVTPS 465 (568)
Q Consensus 426 ~~na-~~i~Aki-IvE~AN~~~~-~~l~~~l~~~GggI~vvPd 465 (568)
..-+ .-+++++ ++.-+|..-. ..+++...++ ||.++|+
T Consensus 82 ~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~A--git~v~~ 122 (389)
T COG1748 82 LTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKA--GITAVLG 122 (389)
T ss_pred HHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHc--CeEEEcc
Confidence 4333 2344432 4556664432 3344444455 5777777
No 146
>KOG2018|consensus
Probab=30.58 E-value=1.4e+02 Score=32.40 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=47.0
Q ss_pred HHHHHHHhhHhhhhcCCCCCCceeEeeCCCCCCCHHH-HHHHHHHHHHHHhhcCccccccCCCCCcccccch---hhhcc
Q psy8846 270 VKALSALMTFKCACVDVPFGGAKAGIKINPKNYSENE-LEKITRRFTLELAKKGFIGEFKAVPGARAREGNV---TFNLL 345 (568)
Q Consensus 270 v~aLA~~MT~K~Al~~lP~GGaKggI~~dP~~~s~~E-ler~~r~f~~~L~~~~~iGp~~dipapD~~~maw---~y~~~ 345 (568)
-.++..|..+|...+.-+--++- +|+.|++.= -|.++|.|. |.|.+ .|-= +|.-+
T Consensus 21 ~~~~ta~k~~k~s~a~~~~k~~s-----k~~~ydd~lireqLarN~a-------FfGee---------~m~kl~~syVVV 79 (430)
T KOG2018|consen 21 QLALTAGKGIKLSTAPDKNKNGS-----KPRQYDDELIREQLARNYA-------FFGEE---------GMEKLTNSYVVV 79 (430)
T ss_pred HHHHHhhhhheecccCCcccCCC-----CcccccHHHHHHHHHhHHh-------hhhhh---------HHHHhcCcEEEE
Confidence 35677777777777766553221 356664331 133444432 44431 1211 22222
Q ss_pred cCceeeccCHHHHHHHHHHHCCCeEeEeCCC
Q psy8846 346 FHYKFSSGPVSMYLPQIWVQEKGKCPGLPTH 376 (568)
Q Consensus 346 ~G~R~~~GnVG~~~A~~L~~~GakvvaVsD~ 376 (568)
.|- |-||+|++-.|.+.|+.=+-|.|.
T Consensus 80 VG~----GgVGSwv~nmL~RSG~qKi~iVDf 106 (430)
T KOG2018|consen 80 VGA----GGVGSWVANMLLRSGVQKIRIVDF 106 (430)
T ss_pred Eec----CchhHHHHHHHHHhcCceEEEech
Confidence 222 999999999999999876666665
No 147
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=30.57 E-value=2.4e+02 Score=30.51 Aligned_cols=40 Identities=8% Similarity=0.166 Sum_probs=30.6
Q ss_pred cCHHHHHHHHHHH-CCCeEeEeCCCCCCHHHHHHHHHhcCCc
Q psy8846 353 GPVSMYLPQIWVQ-EKGKCPGLPTHTRKPLALEEYKLDNGTI 393 (568)
Q Consensus 353 GnVG~~~A~~L~~-~GakvvaVsD~GiD~~~L~~~~~~~g~v 393 (568)
|.+|...++.+.+ .++++|+|.|...|++.+. |.-++.|+
T Consensus 14 GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a-~ll~yDs~ 54 (338)
T PLN02358 14 GRIGRLVARVVLQRDDVELVAVNDPFITTEYMT-YMFKYDSV 54 (338)
T ss_pred cHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHH-HhheeecC
Confidence 8999999999876 5899999999877877653 44444443
No 148
>PRK06138 short chain dehydrogenase; Provisional
Probab=30.14 E-value=51 Score=32.19 Aligned_cols=22 Identities=5% Similarity=0.087 Sum_probs=20.2
Q ss_pred cCHHHHHHHHHHHCCCeEeEeC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVs 374 (568)
|-+|+++|+.|.+.|++|+.++
T Consensus 15 g~iG~~la~~l~~~G~~v~~~~ 36 (252)
T PRK06138 15 SGIGRATAKLFAREGARVVVAD 36 (252)
T ss_pred chHHHHHHHHHHHCCCeEEEec
Confidence 7999999999999999998864
No 149
>PLN00203 glutamyl-tRNA reductase
Probab=29.89 E-value=1.1e+02 Score=35.04 Aligned_cols=86 Identities=7% Similarity=0.090 Sum_probs=56.4
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCc--ccccceEEeecc--ccCCCChhh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENL--MYEPCDIFVPAA--VEKVITKNN 428 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~l--l~~~cDIliPaA--l~~~It~~n 428 (568)
|.+|..+++.|...|++-|.|.+ -+.+....+..+.+.+ ....++.+++ .-.+|||+|-|. ...+|+.+.
T Consensus 275 G~mG~~~a~~L~~~G~~~V~V~n--Rs~era~~La~~~~g~----~i~~~~~~dl~~al~~aDVVIsAT~s~~pvI~~e~ 348 (519)
T PLN00203 275 GKMGKLLVKHLVSKGCTKMVVVN--RSEERVAALREEFPDV----EIIYKPLDEMLACAAEADVVFTSTSSETPLFLKEH 348 (519)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEe--CCHHHHHHHHHHhCCC----ceEeecHhhHHHHHhcCCEEEEccCCCCCeeCHHH
Confidence 99999999999999985444443 4666666665553211 1111222222 225899998874 466899999
Q ss_pred Hhccc--------ceEEEecCCcc
Q psy8846 429 AHKIQ--------AKIIAEAANES 444 (568)
Q Consensus 429 a~~i~--------AkiIvE~AN~~ 444 (568)
+..+. -+++++-|.+.
T Consensus 349 l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 349 VEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred HHHhhhcccccCCCeEEEEeCCCC
Confidence 88763 24999999854
No 150
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=29.88 E-value=50 Score=28.63 Aligned_cols=92 Identities=15% Similarity=0.146 Sum_probs=53.3
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCccc----ccceEEeeccccCCCChh-
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMY----EPCDIFVPAAVEKVITKN- 427 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~----~~cDIliPaAl~~~It~~- 427 (568)
|.+|..+++.|.+.+.+++.|. .|.+...+...+.-.+.. +... +.+.|. .++|.++-+.-....|-.
T Consensus 7 g~~~~~i~~~L~~~~~~vvvid---~d~~~~~~~~~~~~~~i~---gd~~-~~~~l~~a~i~~a~~vv~~~~~d~~n~~~ 79 (116)
T PF02254_consen 7 GRIGREIAEQLKEGGIDVVVID---RDPERVEELREEGVEVIY---GDAT-DPEVLERAGIEKADAVVILTDDDEENLLI 79 (116)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEE---SSHHHHHHHHHTTSEEEE---S-TT-SHHHHHHTTGGCESEEEEESSSHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCEEEEEE---CCcHHHHHHHhccccccc---ccch-hhhHHhhcCccccCEEEEccCCHHHHHHH
Confidence 8899999999999776788743 577777666655311110 0101 112222 467777666543333322
Q ss_pred --hHhcc--cceEEEecCCcchHHHHHH
Q psy8846 428 --NAHKI--QAKIIAEAANESVQESLER 451 (568)
Q Consensus 428 --na~~i--~AkiIvE~AN~~~~~~l~~ 451 (568)
.+.++ ..++|+..-|....+.|++
T Consensus 80 ~~~~r~~~~~~~ii~~~~~~~~~~~l~~ 107 (116)
T PF02254_consen 80 ALLARELNPDIRIIARVNDPENAELLRQ 107 (116)
T ss_dssp HHHHHHHTTTSEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHCCCCeEEEEECCHHHHHHHHH
Confidence 23332 3688888877776666654
No 151
>PRK08251 short chain dehydrogenase; Provisional
Probab=29.80 E-value=43 Score=32.79 Aligned_cols=31 Identities=13% Similarity=0.095 Sum_probs=23.9
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEY 386 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~ 386 (568)
|.+|.++|+.|++.|++|+.++ -+.+.+.+.
T Consensus 12 ~giG~~la~~l~~~g~~v~~~~---r~~~~~~~~ 42 (248)
T PRK08251 12 SGLGAGMAREFAAKGRDLALCA---RRTDRLEEL 42 (248)
T ss_pred CHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHH
Confidence 7899999999999999998854 344444443
No 152
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=29.63 E-value=51 Score=30.07 Aligned_cols=66 Identities=18% Similarity=0.170 Sum_probs=38.4
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcC-CcccCCCCeecCCC------CcccccceEEeeccccCC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNG-TIVGFPGAVPYEGE------NLMYEPCDIFVPAAVEKV 423 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g-~v~~~~ga~~i~~~------~ll~~~cDIliPaAl~~~ 423 (568)
|.+|...|..|++.|..|..++-. ..+.. ..+.| ++....+.+.+.+. ..-..++|+++-|--..+
T Consensus 7 GaiG~~~a~~L~~~g~~V~l~~r~----~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~ 79 (151)
T PF02558_consen 7 GAIGSLYAARLAQAGHDVTLVSRS----PRLEA-IKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ 79 (151)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESH----HHHHH-HHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG
T ss_pred CHHHHHHHHHHHHCCCceEEEEcc----ccHHh-hhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc
Confidence 899999999999999999887633 22333 33334 33332222222111 124557888888854443
No 153
>PRK14852 hypothetical protein; Provisional
Probab=29.58 E-value=3e+02 Score=34.04 Aligned_cols=89 Identities=8% Similarity=-0.012 Sum_probs=48.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCC-CCHHHHHHHH-HhcCCcccCCCCeecCCCCcccccceEEeeccccCCCChhhHh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHT-RKPLALEEYK-LDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAH 430 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~G-iD~~~L~~~~-~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~~It~~na~ 430 (568)
|-||+.+|+.|+..|..-+.+.|.+ ++...|.+.. .....| |-+.++.. .+.+.+.+-+|=|=+ ...-|+++|++
T Consensus 341 GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dI-G~~Kaeva-a~~l~~INP~v~I~~-~~~~I~~en~~ 417 (989)
T PRK14852 341 GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASF-GRGKLDVM-TERALSVNPFLDIRS-FPEGVAAETID 417 (989)
T ss_pred cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhC-CChHHHHH-HHHHHHHCCCCeEEE-EecCCCHHHHH
Confidence 8999999999999999888888872 2333332210 000001 11111111 112222222222222 22346778887
Q ss_pred cc--cceEEEecCCcc
Q psy8846 431 KI--QAKIIAEAANES 444 (568)
Q Consensus 431 ~i--~AkiIvE~AN~~ 444 (568)
.+ .+-+|+++..+.
T Consensus 418 ~fl~~~DiVVDa~D~~ 433 (989)
T PRK14852 418 AFLKDVDLLVDGIDFF 433 (989)
T ss_pred HHhhCCCEEEECCCCc
Confidence 76 678888888763
No 154
>PRK08223 hypothetical protein; Validated
Probab=29.58 E-value=31 Score=36.41 Aligned_cols=87 Identities=15% Similarity=-0.005 Sum_probs=50.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCC-CCHHHHHHHHH-hcCCcccCCCCeecCCCCccc--ccceEEeeccccCCCChhh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHT-RKPLALEEYKL-DNGTIVGFPGAVPYEGENLMY--EPCDIFVPAAVEKVITKNN 428 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~G-iD~~~L~~~~~-~~g~v~~~~ga~~i~~~~ll~--~~cDIliPaAl~~~It~~n 428 (568)
|-+|+.+|++|+..|..=+.+.|.+ ++...|.+..- ....| +-+.++.. .+.+.+ -.|+|- +...-|+++|
T Consensus 36 GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~di-G~~Kve~a-~~~l~~iNP~v~V~---~~~~~l~~~n 110 (287)
T PRK08223 36 GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTL-GRPKAEVL-AEMVRDINPELEIR---AFPEGIGKEN 110 (287)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHC-CCcHHHHH-HHHHHHHCCCCEEE---EEecccCccC
Confidence 8999999999999999989999883 34444433211 00011 11222211 011222 233433 2345667788
Q ss_pred Hhcc--cceEEEecCCcc
Q psy8846 429 AHKI--QAKIIAEAANES 444 (568)
Q Consensus 429 a~~i--~AkiIvE~AN~~ 444 (568)
+..+ ++-+|+++..++
T Consensus 111 ~~~ll~~~DlVvD~~D~~ 128 (287)
T PRK08223 111 ADAFLDGVDVYVDGLDFF 128 (287)
T ss_pred HHHHHhCCCEEEECCCCC
Confidence 7765 578888888764
No 155
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=29.50 E-value=43 Score=31.21 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=22.2
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTH 376 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~ 376 (568)
|.+|+.+++.|.+.|++|++++-.
T Consensus 8 G~vG~~l~~~L~~~~~~V~~~~R~ 31 (183)
T PF13460_consen 8 GFVGRALAKQLLRRGHEVTALVRS 31 (183)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred ChHHHHHHHHHHHCCCEEEEEecC
Confidence 899999999999999999998844
No 156
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=29.49 E-value=76 Score=28.13 Aligned_cols=74 Identities=18% Similarity=0.080 Sum_probs=41.2
Q ss_pred cCHHHHHHHHHHH-CCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccccCCCChhhHh
Q psy8846 353 GPVSMYLPQIWVQ-EKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAH 430 (568)
Q Consensus 353 GnVG~~~A~~L~~-~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~~It~~na~ 430 (568)
|.+|.++++.|.+ .+.++++|.++ +.+.-......++.+..+. ...++.+++...+|||++-|.- +..+.+.+.
T Consensus 9 g~~g~~~~~~l~~~~~~~l~av~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~DvV~~~~~-~~~~~~~~~ 83 (122)
T smart00859 9 GYVGQELLRLLAEHPDFEVVALAAS--ARSAGKRVSEAGPHLKGEV-VLELEPEDFEELAVDIVFLALP-HGVSKEIAP 83 (122)
T ss_pred ChHHHHHHHHHhcCCCceEEEEEec--hhhcCcCHHHHCccccccc-ccccccCChhhcCCCEEEEcCC-cHHHHHHHH
Confidence 7899999999998 59999999543 2111112222333222210 1122333444468999998854 445555443
No 157
>PRK06101 short chain dehydrogenase; Provisional
Probab=29.46 E-value=74 Score=31.23 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=26.4
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLD 389 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~ 389 (568)
|.+|.++|+.|.+.|++|+.+ +-+.+.+.+..+.
T Consensus 11 ~giG~~la~~L~~~G~~V~~~---~r~~~~~~~~~~~ 44 (240)
T PRK06101 11 SGIGKQLALDYAKQGWQVIAC---GRNQSVLDELHTQ 44 (240)
T ss_pred cHHHHHHHHHHHhCCCEEEEE---ECCHHHHHHHHHh
Confidence 789999999999999998874 3466666655443
No 158
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=29.44 E-value=2.8e+02 Score=29.95 Aligned_cols=76 Identities=9% Similarity=0.060 Sum_probs=46.0
Q ss_pred cCHHHHHHHHHHHC----CCeEeEeCCCCCCHHHHHHHHHhcCCccc-CC------------CCeec------CCC--Cc
Q psy8846 353 GPVSMYLPQIWVQE----KGKCPGLPTHTRKPLALEEYKLDNGTIVG-FP------------GAVPY------EGE--NL 407 (568)
Q Consensus 353 GnVG~~~A~~L~~~----GakvvaVsD~GiD~~~L~~~~~~~g~v~~-~~------------ga~~i------~~~--~l 407 (568)
|.+|+.+.+.|.+. ..++|+|-|.. |++.+ .|.-++.|.-| |+ +.+.+ +++ .|
T Consensus 10 GrIGR~~lr~l~e~~~~~~l~vvaind~~-~~~~~-ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p~~~~w 87 (336)
T PRK13535 10 GRIGRNVLRALYESGRRAEITVVAINELA-DAEGM-AHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHERDIASLPW 87 (336)
T ss_pred CHHHHHHHHHHHhcCCCCceEEEEecCCC-CHHHH-HHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCCcccCcc
Confidence 89999999999874 58999999864 66654 34433333311 11 11111 122 23
Q ss_pred ccccceEEeeccccCCCChhhHhc
Q psy8846 408 MYEPCDIFVPAAVEKVITKNNAHK 431 (568)
Q Consensus 408 l~~~cDIliPaAl~~~It~~na~~ 431 (568)
-+.++||.+=|+-. ..+.+-++.
T Consensus 88 ~~~gvDiVle~tG~-~~s~~~a~~ 110 (336)
T PRK13535 88 RELGVDVVLDCTGV-YGSREDGEA 110 (336)
T ss_pred cccCCCEEEEccch-hhhHHHHHH
Confidence 34688888888654 366666653
No 159
>PRK13618 psbV cytochrome c-550; Provisional
Probab=29.43 E-value=71 Score=31.03 Aligned_cols=64 Identities=19% Similarity=0.333 Sum_probs=43.4
Q ss_pred hhhhhhhcCCCCcEEEEEEeEEcCCCcEEEEeeEEEEecCCCCCCCCCeeee--CCCCHHHHHHHHHHhhHhhhhcCCCC
Q psy8846 211 VRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFS--DDVSRDEVKALSALMTFKCACVDVPF 288 (568)
Q Consensus 211 ~~~I~~~I~~~~rv~~v~~pv~~d~G~~~~~~gyrv~h~~~~GP~kGGiR~~--p~v~~dev~aLA~~MT~K~Al~~lP~ 288 (568)
+..+.++|+.|... ||+..+. -.|-.. |=+-.|- ...|.+|+.++|.|.=.-+.+.+--+
T Consensus 95 v~~l~~yik~P~~~----------Dg~~~~~----~~h~~i----k~~~~mP~~~~Lsd~eL~ava~yll~~~~~~~~~w 156 (163)
T PRK13618 95 IEGLVDYMKNPTTY----------DGEEEIS----EIHPSI----KSADIFTAMRNLTDKDLEAIAGHILVQPKILGDKW 156 (163)
T ss_pred HHHHHHHHhCchhc----------cccchhc----cccccc----CccccCCCCCCCCHHHHHHHHHHHHhccCCccccc
Confidence 57778888888876 5554333 222110 1111121 14788999999999999999999999
Q ss_pred CCce
Q psy8846 289 GGAK 292 (568)
Q Consensus 289 GGaK 292 (568)
||||
T Consensus 157 gggk 160 (163)
T PRK13618 157 GGGK 160 (163)
T ss_pred CCce
Confidence 9998
No 160
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=29.38 E-value=2.5e+02 Score=26.56 Aligned_cols=31 Identities=10% Similarity=0.170 Sum_probs=25.2
Q ss_pred cCHHHHHHHHHHH-CCCeEeEeCCCCCCHHHHH
Q psy8846 353 GPVSMYLPQIWVQ-EKGKCPGLPTHTRKPLALE 384 (568)
Q Consensus 353 GnVG~~~A~~L~~-~GakvvaVsD~GiD~~~L~ 384 (568)
|.+|..+++.+.+ .+.++++|.|. .|++.+.
T Consensus 9 GriGr~v~~~~~~~~~~~lvai~d~-~~~~~~a 40 (149)
T smart00846 9 GRIGRLVLRALLERPDIEVVAINDL-TDPETLA 40 (149)
T ss_pred CHHHHHHHHHHHhCCCCEEEEeecC-CCHHHHH
Confidence 8899999998875 68999999986 5766543
No 161
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=29.37 E-value=58 Score=32.36 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=26.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLD 389 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~ 389 (568)
|-+|.++|+.|.+.|++|+.++ -+.+.+.+...+
T Consensus 16 ~gIG~~ia~~l~~~G~~V~~~~---r~~~~~~~~~~~ 49 (263)
T PRK06200 16 SGIGRALVERFLAEGARVAVLE---RSAEKLASLRQR 49 (263)
T ss_pred chHHHHHHHHHHHCCCEEEEEe---CCHHHHHHHHHH
Confidence 6899999999999999988753 455566555443
No 162
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=29.18 E-value=59 Score=32.34 Aligned_cols=24 Identities=4% Similarity=-0.180 Sum_probs=21.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTH 376 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~ 376 (568)
+.+|.++|+.|.+.|++|+.+++.
T Consensus 18 ~gIG~~ia~~l~~~G~~v~~~~~~ 41 (260)
T PRK08416 18 RGIGKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred chHHHHHHHHHHHCCCEEEEEcCC
Confidence 789999999999999999886543
No 163
>PRK07102 short chain dehydrogenase; Provisional
Probab=28.80 E-value=29 Score=33.98 Aligned_cols=30 Identities=10% Similarity=0.026 Sum_probs=23.5
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEE 385 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~ 385 (568)
|.+|.++++.|.+.|++|++++ .+.+.+.+
T Consensus 11 ~giG~~~a~~l~~~G~~Vi~~~---r~~~~~~~ 40 (243)
T PRK07102 11 SDIARACARRYAAAGARLYLAA---RDVERLER 40 (243)
T ss_pred cHHHHHHHHHHHhcCCEEEEEe---CCHHHHHH
Confidence 7899999999999999988853 34444443
No 164
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=28.64 E-value=64 Score=31.86 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=25.6
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKL 388 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~ 388 (568)
|-+|.++|+.|.+.|++|+.+ +-+.+.+.+..+
T Consensus 16 ~~iG~~ia~~l~~~G~~v~~~---~r~~~~~~~~~~ 48 (257)
T PRK07067 16 SGIGEAVAERYLAEGARVVIA---DIKPARARLAAL 48 (257)
T ss_pred chHHHHHHHHHHHcCCEEEEE---cCCHHHHHHHHH
Confidence 789999999999999999875 345555555444
No 165
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=28.56 E-value=79 Score=32.66 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=37.7
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCC------CCeecCC-CCcccccceEEeecccc
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFP------GAVPYEG-ENLMYEPCDIFVPAAVE 421 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~------ga~~i~~-~~ll~~~cDIliPaAl~ 421 (568)
|++|+.+|..|++.|..|..+ +.+.+.+.+...........+ +.+..+. ++. -.+||+++-|.-.
T Consensus 10 G~mG~~~a~~L~~~g~~V~~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~~v~~ 81 (325)
T PRK00094 10 GSWGTALAIVLARNGHDVTLW---ARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEA-LADADLILVAVPS 81 (325)
T ss_pred CHHHHHHHHHHHhCCCEEEEE---ECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHH-HhCCCEEEEeCCH
Confidence 999999999999999987653 345555555544311111111 2222221 122 2478999887554
No 166
>KOG1502|consensus
Probab=28.50 E-value=75 Score=34.23 Aligned_cols=24 Identities=8% Similarity=0.194 Sum_probs=21.4
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTH 376 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~ 376 (568)
|-+|+|+++.|.++|++|.|..-.
T Consensus 16 GfIgswivk~LL~rGY~V~gtVR~ 39 (327)
T KOG1502|consen 16 GFIGSWIVKLLLSRGYTVRGTVRD 39 (327)
T ss_pred hHHHHHHHHHHHhCCCEEEEEEcC
Confidence 899999999999999999995533
No 167
>PRK07326 short chain dehydrogenase; Provisional
Probab=28.46 E-value=88 Score=30.24 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=25.7
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKL 388 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~ 388 (568)
|.+|+++++.|.+.|++|++++ .+.+.+.+..+
T Consensus 16 g~iG~~la~~l~~~g~~V~~~~---r~~~~~~~~~~ 48 (237)
T PRK07326 16 KGIGFAIAEALLAEGYKVAITA---RDQKELEEAAA 48 (237)
T ss_pred CcHHHHHHHHHHHCCCEEEEee---CCHHHHHHHHH
Confidence 8999999999999999988853 45665554433
No 168
>PRK07825 short chain dehydrogenase; Provisional
Probab=28.38 E-value=58 Score=32.56 Aligned_cols=34 Identities=3% Similarity=-0.102 Sum_probs=26.9
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLD 389 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~ 389 (568)
|.+|.++|+.|.+.|++|+.+ +.+.+.+.+....
T Consensus 15 ggiG~~la~~l~~~G~~v~~~---~r~~~~~~~~~~~ 48 (273)
T PRK07825 15 RGIGLATARALAALGARVAIG---DLDEALAKETAAE 48 (273)
T ss_pred chHHHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHH
Confidence 789999999999999998774 3577776665444
No 169
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=28.34 E-value=23 Score=38.06 Aligned_cols=63 Identities=16% Similarity=0.165 Sum_probs=38.7
Q ss_pred cCHHHHHHHHHHHCCC--eEeEeCCCCCCHHHHHHHHHhcCCcccCCCCee--cC---CCCc--ccccceEEeeccccC
Q psy8846 353 GPVSMYLPQIWVQEKG--KCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVP--YE---GENL--MYEPCDIFVPAAVEK 422 (568)
Q Consensus 353 GnVG~~~A~~L~~~Ga--kvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~--i~---~~~l--l~~~cDIliPaAl~~ 422 (568)
|.||+.+++.|.+.+- +|+. .|.+.+++.+..++.. ....+. ++ .+++ +-.+|||+|-|+-.-
T Consensus 7 G~vG~~~~~~L~~~~~~~~v~v---a~r~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 7 GRVGSAIARLLARRGPFEEVTV---ADRNPEKAERLAEKLL----GDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp SHHHHHHHHHHHCTTCE-EEEE---EESSHHHHHHHHT--T----TTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred cHHHHHHHHHHhcCCCCCcEEE---EECCHHHHHHHHhhcc----ccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 8999999999999874 5554 4678888888776420 011111 22 1222 234889999987654
No 170
>PRK07069 short chain dehydrogenase; Validated
Probab=27.82 E-value=54 Score=32.00 Aligned_cols=22 Identities=9% Similarity=0.009 Sum_probs=20.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVs 374 (568)
|.+|.++|+.|.+.|++|+.++
T Consensus 9 ~~iG~~~a~~l~~~G~~v~~~~ 30 (251)
T PRK07069 9 GGLGRAIARRMAEQGAKVFLTD 30 (251)
T ss_pred ChHHHHHHHHHHHCCCEEEEEe
Confidence 7899999999999999998864
No 171
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=27.78 E-value=57 Score=31.63 Aligned_cols=33 Identities=9% Similarity=0.021 Sum_probs=24.7
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKL 388 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~ 388 (568)
|.+|.++++.|.+.|+.|+.. +-+.+.+.+...
T Consensus 16 g~iG~~la~~l~~~g~~v~~~---~~~~~~~~~~~~ 48 (245)
T PRK12936 16 GGIGEEIARLLHAQGAIVGLH---GTRVEKLEALAA 48 (245)
T ss_pred ChHHHHHHHHHHHCCCEEEEE---cCCHHHHHHHHH
Confidence 889999999999999987652 335566655443
No 172
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=27.54 E-value=1.1e+02 Score=31.65 Aligned_cols=31 Identities=10% Similarity=-0.057 Sum_probs=25.3
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEY 386 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~ 386 (568)
|++|..+|..|+..|..|+. .+.+.+.+...
T Consensus 13 G~mG~~iA~~la~~G~~V~l---~d~~~~~~~~~ 43 (292)
T PRK07530 13 GQMGNGIAHVCALAGYDVLL---NDVSADRLEAG 43 (292)
T ss_pred cHHHHHHHHHHHHCCCeEEE---EeCCHHHHHHH
Confidence 99999999999999999887 35676666543
No 173
>PLN02712 arogenate dehydrogenase
Probab=27.48 E-value=76 Score=37.28 Aligned_cols=89 Identities=10% Similarity=0.221 Sum_probs=50.1
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeec-CCCCcccccceEEeecc----ccCCCChh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPY-EGENLMYEPCDIFVPAA----VEKVITKN 427 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i-~~~~ll~~~cDIliPaA----l~~~It~~ 427 (568)
|++|.++|+.|.+.|.+|+++... ... +...+.| +... +.+++....||+++-|. +..++.+-
T Consensus 378 G~mG~slA~~L~~~G~~V~~~dr~---~~~--~~a~~~G-------v~~~~~~~el~~~~aDvVILavP~~~~~~vi~~l 445 (667)
T PLN02712 378 GNFGQFLAKTMVKQGHTVLAYSRS---DYS--DEAQKLG-------VSYFSDADDLCEEHPEVILLCTSILSTEKVLKSL 445 (667)
T ss_pred CHHHHHHHHHHHHCcCEEEEEECC---hHH--HHHHHcC-------CeEeCCHHHHHhcCCCEEEECCChHHHHHHHHHH
Confidence 999999999999999998875432 111 1122222 2222 22344444689999993 33333322
Q ss_pred hHhccc-ceEEEecCCcc--hHHHHHHHh
Q psy8846 428 NAHKIQ-AKIIAEAANES--VQESLERRF 453 (568)
Q Consensus 428 na~~i~-AkiIvE~AN~~--~~~~l~~~l 453 (568)
-...++ -.+|++-+... ..+.+++.+
T Consensus 446 ~~~~lk~g~ivvDv~SvK~~~~~~~~~~l 474 (667)
T PLN02712 446 PFQRLKRSTLFVDVLSVKEFPRNLFLQHL 474 (667)
T ss_pred HHhcCCCCcEEEECCCccHHHHHHHHHhc
Confidence 111343 35888877753 234444443
No 174
>PRK08655 prephenate dehydrogenase; Provisional
Probab=27.41 E-value=80 Score=35.04 Aligned_cols=78 Identities=12% Similarity=0.144 Sum_probs=47.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCC-CCcccccceEEeeccccCCCChhh---
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEG-ENLMYEPCDIFVPAAVEKVITKNN--- 428 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~-~~ll~~~cDIliPaAl~~~It~~n--- 428 (568)
|.+|.++|+.|.+.|..|+++ +.|.+.+.+...+.| +...+. ++. -.+||+++-|.-...+ .+-
T Consensus 10 G~mG~slA~~L~~~G~~V~v~---~r~~~~~~~~a~~~g-------v~~~~~~~e~-~~~aDvVIlavp~~~~-~~vl~~ 77 (437)
T PRK08655 10 GGLGKWFARFLKEKGFEVIVT---GRDPKKGKEVAKELG-------VEYANDNIDA-AKDADIVIISVPINVT-EDVIKE 77 (437)
T ss_pred CHHHHHHHHHHHHCCCEEEEE---ECChHHHHHHHHHcC-------CeeccCHHHH-hccCCEEEEecCHHHH-HHHHHH
Confidence 899999999999999988763 356666555444433 221111 122 2478998877543332 233
Q ss_pred -Hhccc-ceEEEecCC
Q psy8846 429 -AHKIQ-AKIIAEAAN 442 (568)
Q Consensus 429 -a~~i~-AkiIvE~AN 442 (568)
++.++ -.+|+.-++
T Consensus 78 l~~~l~~~~iViDvsS 93 (437)
T PRK08655 78 VAPHVKEGSLLMDVTS 93 (437)
T ss_pred HHhhCCCCCEEEEccc
Confidence 33333 357777776
No 175
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=27.40 E-value=89 Score=32.31 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=50.0
Q ss_pred cCHHHHHHHHHHH--CCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeec-CCCCcccccceEEeeccccCCCChhhH
Q psy8846 353 GPVSMYLPQIWVQ--EKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPY-EGENLMYEPCDIFVPAAVEKVITKNNA 429 (568)
Q Consensus 353 GnVG~~~A~~L~~--~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i-~~~~ll~~~cDIliPaAl~~~It~~na 429 (568)
|++|...++.|.+ .|+++++|.|. +.++..+..++.|. ...+ +.++++ .++|+++=|+-.... .+-+
T Consensus 15 G~IG~~~a~~L~~~~~~~el~aV~dr--~~~~a~~~a~~~g~------~~~~~~~eell-~~~D~Vvi~tp~~~h-~e~~ 84 (271)
T PRK13302 15 GAIGKAIAQALDRGLPGLTLSAVAVR--DPQRHADFIWGLRR------PPPVVPLDQLA-THADIVVEAAPASVL-RAIV 84 (271)
T ss_pred cHHHHHHHHHHHhcCCCeEEEEEECC--CHHHHHHHHHhcCC------CcccCCHHHHh-cCCCEEEECCCcHHH-HHHH
Confidence 9999999999986 48999999876 66666666555431 1122 234565 479999999765543 3333
Q ss_pred h-ccc--ceEEEec
Q psy8846 430 H-KIQ--AKIIAEA 440 (568)
Q Consensus 430 ~-~i~--AkiIvE~ 440 (568)
. -++ .-++++.
T Consensus 85 ~~aL~aGk~Vi~~s 98 (271)
T PRK13302 85 EPVLAAGKKAIVLS 98 (271)
T ss_pred HHHHHcCCcEEEec
Confidence 3 233 3466653
No 176
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=27.38 E-value=74 Score=31.01 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=25.8
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYK 387 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~ 387 (568)
|-||..+|-.|++.|.+|++ .++|.+.+..+.
T Consensus 9 GyvGl~~A~~lA~~G~~V~g---~D~~~~~v~~l~ 40 (185)
T PF03721_consen 9 GYVGLPLAAALAEKGHQVIG---VDIDEEKVEALN 40 (185)
T ss_dssp STTHHHHHHHHHHTTSEEEE---E-S-HHHHHHHH
T ss_pred CcchHHHHHHHHhCCCEEEE---EeCChHHHHHHh
Confidence 99999999999999999999 567777666553
No 177
>PRK08328 hypothetical protein; Provisional
Probab=27.28 E-value=46 Score=33.59 Aligned_cols=90 Identities=11% Similarity=0.048 Sum_probs=48.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCC-CCHHHHHHHHHh-cCCcccCCCCeecCCCCcccccceEEeeccccCCCChhhHh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHT-RKPLALEEYKLD-NGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAH 430 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~G-iD~~~L~~~~~~-~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~~It~~na~ 430 (568)
|-+|+++|+.|+..|..-+.+.|.+ ++...|-+..-- ...+...+.++. ..+.+....-||-+=+ ....++++|+.
T Consensus 36 GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~-a~~~l~~~np~v~v~~-~~~~~~~~~~~ 113 (231)
T PRK08328 36 GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLS-AKWKLERFNSDIKIET-FVGRLSEENID 113 (231)
T ss_pred CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHH-HHHHHHHhCCCCEEEE-EeccCCHHHHH
Confidence 9999999999999998888887873 243333321100 000100011110 0111222233444433 23457888876
Q ss_pred cc--cceEEEecCCcc
Q psy8846 431 KI--QAKIIAEAANES 444 (568)
Q Consensus 431 ~i--~AkiIvE~AN~~ 444 (568)
.+ ++-+|+++.-+.
T Consensus 114 ~~l~~~D~Vid~~d~~ 129 (231)
T PRK08328 114 EVLKGVDVIVDCLDNF 129 (231)
T ss_pred HHHhcCCEEEECCCCH
Confidence 54 578888876544
No 178
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=27.09 E-value=1.3e+02 Score=37.24 Aligned_cols=81 Identities=10% Similarity=0.046 Sum_probs=49.5
Q ss_pred cCHHHHHHHHHHHC-CCe------------EeEeCCCCCCHHHHHHHHHhcCCcccCCCCe--e--c-CCCCccc--ccc
Q psy8846 353 GPVSMYLPQIWVQE-KGK------------CPGLPTHTRKPLALEEYKLDNGTIVGFPGAV--P--Y-EGENLMY--EPC 412 (568)
Q Consensus 353 GnVG~~~A~~L~~~-Gak------------vvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~--~--i-~~~~ll~--~~c 412 (568)
|.||+..|++|++. ++. +|+|+|. +.++..+..+. +++++ . + +.+++.. .++
T Consensus 578 G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~--~~~~a~~la~~------~~~~~~v~lDv~D~e~L~~~v~~~ 649 (1042)
T PLN02819 578 GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL--YLKDAKETVEG------IENAEAVQLDVSDSESLLKYVSQV 649 (1042)
T ss_pred CHHHHHHHHHHHhCcCccccccccccccccEEEEECC--CHHHHHHHHHh------cCCCceEEeecCCHHHHHHhhcCC
Confidence 99999999999875 444 5777765 55555554443 23321 1 2 2245555 479
Q ss_pred eEEeeccccCCCChhhHh---cccceEEEecCC
Q psy8846 413 DIFVPAAVEKVITKNNAH---KIQAKIIAEAAN 442 (568)
Q Consensus 413 DIliPaAl~~~It~~na~---~i~AkiIvE~AN 442 (568)
|+.+=| +....+.+.|. +-+.-++++.-.
T Consensus 650 DaVIsa-lP~~~H~~VAkaAieaGkHvv~eky~ 681 (1042)
T PLN02819 650 DVVISL-LPASCHAVVAKACIELKKHLVTASYV 681 (1042)
T ss_pred CEEEEC-CCchhhHHHHHHHHHcCCCEEECcCC
Confidence 998876 45556666554 234566776544
No 179
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.83 E-value=71 Score=31.80 Aligned_cols=21 Identities=5% Similarity=-0.189 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHCCCeEeEeC
Q psy8846 354 PVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 354 nVG~~~A~~L~~~GakvvaVs 374 (568)
.+|..+|+.|++.|++|+.++
T Consensus 20 gIG~a~a~~la~~G~~Vi~~~ 40 (252)
T PRK06079 20 SIAWGCAQAIKDQGATVIYTY 40 (252)
T ss_pred chHHHHHHHHHHCCCEEEEec
Confidence 599999999999999998753
No 180
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=26.72 E-value=1.6e+02 Score=29.67 Aligned_cols=89 Identities=13% Similarity=0.138 Sum_probs=51.3
Q ss_pred cCHHHHHHHHHHHCC---CeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeec-CCCCcccccceEEeeccccCCCChhh
Q psy8846 353 GPVSMYLPQIWVQEK---GKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPY-EGENLMYEPCDIFVPAAVEKVITKNN 428 (568)
Q Consensus 353 GnVG~~~A~~L~~~G---akvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i-~~~~ll~~~cDIliPaAl~~~It~~n 428 (568)
|++|..+++.|.+.| ..|.. .|. +.+.+.++.+..| .+.. ++++++ .+||+++-|.-... ..+.
T Consensus 11 G~mG~~la~~l~~~g~~~~~v~v-~~r--~~~~~~~~~~~~g-------~~~~~~~~~~~-~~advVil~v~~~~-~~~v 78 (267)
T PRK11880 11 GNMASAIIGGLLASGVPAKDIIV-SDP--SPEKRAALAEEYG-------VRAATDNQEAA-QEADVVVLAVKPQV-MEEV 78 (267)
T ss_pred hHHHHHHHHHHHhCCCCcceEEE-EcC--CHHHHHHHHHhcC-------CeecCChHHHH-hcCCEEEEEcCHHH-HHHH
Confidence 999999999999988 44443 333 5566555544432 2222 223343 58999998865443 2233
Q ss_pred Hhccc---ceEEEecCCcchHHHHHHHh
Q psy8846 429 AHKIQ---AKIIAEAANESVQESLERRF 453 (568)
Q Consensus 429 a~~i~---AkiIvE~AN~~~~~~l~~~l 453 (568)
...++ -++|+--.|+--.+.+++.+
T Consensus 79 ~~~l~~~~~~~vvs~~~gi~~~~l~~~~ 106 (267)
T PRK11880 79 LSELKGQLDKLVVSIAAGVTLARLERLL 106 (267)
T ss_pred HHHHHhhcCCEEEEecCCCCHHHHHHhc
Confidence 33332 25677667754444555554
No 181
>PRK06198 short chain dehydrogenase; Provisional
Probab=26.68 E-value=52 Score=32.43 Aligned_cols=21 Identities=0% Similarity=-0.061 Sum_probs=18.6
Q ss_pred cCHHHHHHHHHHHCCCe-EeEe
Q psy8846 353 GPVSMYLPQIWVQEKGK-CPGL 373 (568)
Q Consensus 353 GnVG~~~A~~L~~~Gak-vvaV 373 (568)
|.+|+++++.|.+.|++ |+.+
T Consensus 16 g~iG~~la~~l~~~G~~~V~~~ 37 (260)
T PRK06198 16 QGLGAAIARAFAERGAAGLVIC 37 (260)
T ss_pred chHHHHHHHHHHHCCCCeEEEE
Confidence 78999999999999999 6653
No 182
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=26.51 E-value=48 Score=32.00 Aligned_cols=84 Identities=10% Similarity=0.148 Sum_probs=52.4
Q ss_pred HHHHHHHhhHh-hhhcCCCCCCceeEeeCCCCCCCHHHHHHHHHHHHHHHhhcCccccccCCCCCcccccchhhhcccCc
Q psy8846 270 VKALSALMTFK-CACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPGARAREGNVTFNLLFHY 348 (568)
Q Consensus 270 v~aLA~~MT~K-~Al~~lP~GGaKggI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~dipapD~~~maw~y~~~~G~ 348 (568)
-..||..+.-. ..+.++.+-|-.. ......-++.+..+|+..|..+.--|| =.-++|-+.
T Consensus 16 y~~la~~l~~~~~~v~~i~~~~~~~------~~~~~~si~~la~~y~~~I~~~~~~gp--------~~L~G~S~G----- 76 (229)
T PF00975_consen 16 YRPLARALPDDVIGVYGIEYPGRGD------DEPPPDSIEELASRYAEAIRARQPEGP--------YVLAGWSFG----- 76 (229)
T ss_dssp GHHHHHHHTTTEEEEEEECSTTSCT------TSHEESSHHHHHHHHHHHHHHHTSSSS--------EEEEEETHH-----
T ss_pred HHHHHHhCCCCeEEEEEEecCCCCC------CCCCCCCHHHHHHHHHHHhhhhCCCCC--------eeehccCcc-----
Confidence 36777777775 6677776655540 111123467788889988876321111 123444221
Q ss_pred eeeccCHHHHHHHHHHHCCCeE--eEeCCC
Q psy8846 349 KFSSGPVSMYLPQIWVQEKGKC--PGLPTH 376 (568)
Q Consensus 349 R~~~GnVG~~~A~~L~~~Gakv--vaVsD~ 376 (568)
|.++..+|+.|.+.|.+| |.+.|+
T Consensus 77 ----g~lA~E~A~~Le~~G~~v~~l~liD~ 102 (229)
T PF00975_consen 77 ----GILAFEMARQLEEAGEEVSRLILIDS 102 (229)
T ss_dssp ----HHHHHHHHHHHHHTT-SESEEEEESC
T ss_pred ----HHHHHHHHHHHHHhhhccCceEEecC
Confidence 899999999999999866 667775
No 183
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=26.25 E-value=2.4e+02 Score=29.43 Aligned_cols=107 Identities=14% Similarity=0.119 Sum_probs=56.8
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcc--cccceEEeeccccCCCChh---
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLM--YEPCDIFVPAAVEKVITKN--- 427 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll--~~~cDIliPaAl~~~It~~--- 427 (568)
|.+|++++..|.+.|++-|.|.|. |.++..+..+..+. .++.......+++. -.+|||+|=|.--+.-...
T Consensus 136 GGaaraia~aL~~~G~~~I~I~nR--~~~ka~~la~~l~~--~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~ 211 (284)
T PRK12549 136 GGAGAAVAHALLTLGVERLTIFDV--DPARAAALADELNA--RFPAARATAGSDLAAALAAADGLVHATPTGMAKHPGLP 211 (284)
T ss_pred cHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHHHHh--hCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCCCCC
Confidence 999999999999999865666554 55555554432110 11222222222221 1469999988432211110
Q ss_pred -hHhccc-ceEEEecCCcchHHHHHHHhccCCCcccccCc
Q psy8846 428 -NAHKIQ-AKIIAEAANESVQESLERRFGNVGGRIPVTPS 465 (568)
Q Consensus 428 -na~~i~-AkiIvE~AN~~~~~~l~~~l~~~GggI~vvPd 465 (568)
+...++ ..+|.+...+|....+-+.-+++| ..++.-
T Consensus 212 ~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G--~~~~~G 249 (284)
T PRK12549 212 LPAELLRPGLWVADIVYFPLETELLRAARALG--CRTLDG 249 (284)
T ss_pred CCHHHcCCCcEEEEeeeCCCCCHHHHHHHHCC--CeEecC
Confidence 112232 457888888875333322224454 444544
No 184
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=26.21 E-value=54 Score=33.11 Aligned_cols=22 Identities=5% Similarity=-0.029 Sum_probs=20.7
Q ss_pred cCHHHHHHHHHHHCCCeEeEeC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVs 374 (568)
|++|+++++.|.+.|.+|.+++
T Consensus 9 G~iG~~vv~~L~~~g~~V~~~~ 30 (285)
T TIGR03649 9 GKTASRIARLLQAASVPFLVAS 30 (285)
T ss_pred ChHHHHHHHHHHhCCCcEEEEe
Confidence 9999999999999999998876
No 185
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=26.18 E-value=54 Score=32.87 Aligned_cols=30 Identities=17% Similarity=0.117 Sum_probs=22.9
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEE 385 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~ 385 (568)
|.+|+++|+.|.+.|++|+.++ -+.+.+.+
T Consensus 20 ~giG~~ia~~l~~~G~~V~~~~---r~~~~~~~ 49 (278)
T PRK08277 20 GVLGGAMAKELARAGAKVAILD---RNQEKAEA 49 (278)
T ss_pred chHHHHHHHHHHHCCCEEEEEe---CCHHHHHH
Confidence 7899999999999999988743 34444433
No 186
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=26.15 E-value=87 Score=32.77 Aligned_cols=33 Identities=12% Similarity=0.051 Sum_probs=24.8
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKL 388 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~ 388 (568)
|++|..+|..|++.|..|..+ +-|.+.+.....
T Consensus 9 Ga~G~ala~~L~~~g~~V~l~---~r~~~~~~~i~~ 41 (326)
T PRK14620 9 GSFGTAIAIALSSKKISVNLW---GRNHTTFESINT 41 (326)
T ss_pred CHHHHHHHHHHHHCCCeEEEE---ecCHHHHHHHHH
Confidence 999999999999999888753 335555555544
No 187
>PRK09135 pteridine reductase; Provisional
Probab=26.11 E-value=60 Score=31.45 Aligned_cols=23 Identities=0% Similarity=-0.172 Sum_probs=21.1
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPT 375 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD 375 (568)
|.+|+++++.|.+.|++|++++-
T Consensus 16 g~iG~~l~~~l~~~g~~v~~~~r 38 (249)
T PRK09135 16 RRIGAAIARTLHAAGYRVAIHYH 38 (249)
T ss_pred chHHHHHHHHHHHCCCEEEEEcC
Confidence 89999999999999999998763
No 188
>PRK08643 acetoin reductase; Validated
Probab=26.06 E-value=66 Score=31.65 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=19.8
Q ss_pred cCHHHHHHHHHHHCCCeEeEeC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVs 374 (568)
|.+|.++|+.|.+.|++|+.++
T Consensus 12 ~giG~~la~~l~~~G~~v~~~~ 33 (256)
T PRK08643 12 QGIGFAIAKRLVEDGFKVAIVD 33 (256)
T ss_pred ChHHHHHHHHHHHCCCEEEEEe
Confidence 7899999999999999988854
No 189
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=25.53 E-value=98 Score=32.42 Aligned_cols=101 Identities=14% Similarity=0.121 Sum_probs=60.7
Q ss_pred cCHHHHHHHHHHHC---CCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecC-CCCcccccceEEeeccccCCCChhh
Q psy8846 353 GPVSMYLPQIWVQE---KGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYE-GENLMYEPCDIFVPAAVEKVITKNN 428 (568)
Q Consensus 353 GnVG~~~A~~L~~~---GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~-~~~ll~~~cDIliPaAl~~~It~~n 428 (568)
|+.|..+++.|... +.++++|.|.. .++..+.... ...++ .++++..++|+.+=||....+.+--
T Consensus 11 GaIG~~va~~l~~~~~~~~~l~~V~~~~--~~~~~~~~~~---------~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~ 79 (267)
T PRK13301 11 GAIASDVAAGLLADAAQPCQLAALTRNA--ADLPPALAGR---------VALLDGLPGLLAWRPDLVVEAAGQQAIAEHA 79 (267)
T ss_pred cHHHHHHHHHHhcCCCCceEEEEEecCC--HHHHHHhhcc---------CcccCCHHHHhhcCCCEEEECCCHHHHHHHH
Confidence 99999999998653 47899998773 3332222111 22333 4677888999999999988776655
Q ss_pred Hhccc--ceEEEec----CCcchHHHHHHHhccCCCcccccCc
Q psy8846 429 AHKIQ--AKIIAEA----ANESVQESLERRFGNVGGRIPVTPS 465 (568)
Q Consensus 429 a~~i~--AkiIvE~----AN~~~~~~l~~~l~~~GggI~vvPd 465 (568)
.+-++ +.+|+-. |+..+.+.|.+...+.|.. +++|.
T Consensus 80 ~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~-i~ipS 121 (267)
T PRK13301 80 EGCLTAGLDMIICSAGALADDALRARLIAAAEAGGAR-IRVPA 121 (267)
T ss_pred HHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCE-EEEeC
Confidence 55554 4454433 2222333344433444433 45676
No 190
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=25.50 E-value=1.3e+02 Score=29.62 Aligned_cols=22 Identities=0% Similarity=-0.050 Sum_probs=20.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVs 374 (568)
|-+|+++|+.|.+.|++|+.+.
T Consensus 22 g~IG~~la~~l~~~G~~V~~~~ 43 (259)
T PRK08213 22 RGLGLQIAEALGEAGARVVLSA 43 (259)
T ss_pred chHHHHHHHHHHHcCCEEEEEe
Confidence 8999999999999999988754
No 191
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=25.36 E-value=75 Score=30.57 Aligned_cols=22 Identities=5% Similarity=-0.094 Sum_probs=19.9
Q ss_pred cCHHHHHHHHHHHCCCeEeEeC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVs 374 (568)
|.+|.++++.|.+.|++|++++
T Consensus 15 g~iG~~l~~~l~~~g~~v~~~~ 36 (246)
T PRK05653 15 RGIGRAIALRLAADGAKVVIYD 36 (246)
T ss_pred cHHHHHHHHHHHHCCCEEEEEe
Confidence 8899999999999999987754
No 192
>PRK05867 short chain dehydrogenase; Provisional
Probab=25.31 E-value=1e+02 Score=30.44 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=25.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYK 387 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~ 387 (568)
|.+|.++|+.|++.|++|+.+ +.+.+.+.+..
T Consensus 19 ~gIG~~ia~~l~~~G~~V~~~---~r~~~~~~~~~ 50 (253)
T PRK05867 19 TGIGKRVALAYVEAGAQVAIA---ARHLDALEKLA 50 (253)
T ss_pred chHHHHHHHHHHHCCCEEEEE---cCCHHHHHHHH
Confidence 789999999999999998874 34666555443
No 193
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=25.26 E-value=1.1e+02 Score=31.41 Aligned_cols=32 Identities=13% Similarity=0.014 Sum_probs=26.4
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYK 387 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~ 387 (568)
|.+|..+|..|++.|..|+. .+.|.+.+.+..
T Consensus 10 G~mG~~iA~~la~~G~~V~~---~d~~~~~~~~~~ 41 (288)
T PRK09260 10 GVMGRGIAYVFAVSGFQTTL---VDIKQEQLESAQ 41 (288)
T ss_pred cHHHHHHHHHHHhCCCcEEE---EeCCHHHHHHHH
Confidence 99999999999999999887 456777766543
No 194
>PRK06196 oxidoreductase; Provisional
Probab=25.20 E-value=68 Score=33.13 Aligned_cols=32 Identities=13% Similarity=0.048 Sum_probs=25.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYK 387 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~ 387 (568)
|-+|.++|+.|++.|++|+.++ -+.+.+.+..
T Consensus 36 ggIG~~~a~~L~~~G~~Vv~~~---R~~~~~~~~~ 67 (315)
T PRK06196 36 SGLGLETTRALAQAGAHVIVPA---RRPDVAREAL 67 (315)
T ss_pred chHHHHHHHHHHHCCCEEEEEe---CCHHHHHHHH
Confidence 7899999999999999998853 4555555443
No 195
>PRK06172 short chain dehydrogenase; Provisional
Probab=25.07 E-value=56 Score=32.09 Aligned_cols=22 Identities=9% Similarity=-0.005 Sum_probs=20.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVs 374 (568)
|.+|.++|+.|.+.|++|+.++
T Consensus 17 ~~iG~~ia~~l~~~G~~v~~~~ 38 (253)
T PRK06172 17 AGIGRATALAFAREGAKVVVAD 38 (253)
T ss_pred chHHHHHHHHHHHcCCEEEEEe
Confidence 7999999999999999988854
No 196
>KOG0725|consensus
Probab=25.02 E-value=83 Score=32.55 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHH
Q psy8846 354 PVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKL 388 (568)
Q Consensus 354 nVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~ 388 (568)
-.|..+|+.|++.||+|+. .|.+.+.+.+...
T Consensus 19 GIG~aia~~la~~Ga~v~i---~~r~~~~~~~~~~ 50 (270)
T KOG0725|consen 19 GIGKAIALLLAKAGAKVVI---TGRSEERLEETAQ 50 (270)
T ss_pred hHHHHHHHHHHHCCCEEEE---EeCCHHHHHHHHH
Confidence 4689999999999999998 4566666655443
No 197
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=24.91 E-value=79 Score=31.89 Aligned_cols=22 Identities=14% Similarity=-0.167 Sum_probs=19.6
Q ss_pred cCHHHHHHHHHHHCCCeEeEeC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVs 374 (568)
|.+|+++++.|.+.|..++.+.
T Consensus 7 GfiG~~l~~~L~~~g~~v~~~~ 28 (306)
T PLN02725 7 GLVGSAIVRKLEALGFTNLVLR 28 (306)
T ss_pred CcccHHHHHHHHhCCCcEEEee
Confidence 8999999999999999877654
No 198
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=24.86 E-value=1.1e+02 Score=31.43 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcC
Q psy8846 354 PVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNG 391 (568)
Q Consensus 354 nVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g 391 (568)
-.|..+|+.+++.|-+||. +|=+.++|.+.+++.-
T Consensus 16 GIGl~lak~f~elgN~VIi---~gR~e~~L~e~~~~~p 50 (245)
T COG3967 16 GIGLALAKRFLELGNTVII---CGRNEERLAEAKAENP 50 (245)
T ss_pred hhhHHHHHHHHHhCCEEEE---ecCcHHHHHHHHhcCc
Confidence 4789999999999999988 7999999999888753
No 199
>PRK08339 short chain dehydrogenase; Provisional
Probab=24.31 E-value=1e+02 Score=30.84 Aligned_cols=32 Identities=9% Similarity=0.140 Sum_probs=25.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYK 387 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~ 387 (568)
|-+|.++|+.|++.|++|+.+ +.+.+.+.+..
T Consensus 18 ~gIG~aia~~l~~~G~~V~~~---~r~~~~~~~~~ 49 (263)
T PRK08339 18 KGIGFGVARVLARAGADVILL---SRNEENLKKAR 49 (263)
T ss_pred CcHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHH
Confidence 689999999999999998874 34666655444
No 200
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=24.10 E-value=87 Score=35.69 Aligned_cols=78 Identities=15% Similarity=0.143 Sum_probs=49.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCc--ccCCC--------CeecCCC------Cccc---ccce
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTI--VGFPG--------AVPYEGE------NLMY---EPCD 413 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v--~~~~g--------a~~i~~~------~ll~---~~cD 413 (568)
|.+|..++..+...||+|++ .+.+.+++.....-..+. .+... ++..+.+ +.+. ..||
T Consensus 174 G~iGL~Ai~~Ak~lGA~V~a---~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaD 250 (509)
T PRK09424 174 GVAGLAAIGAAGSLGAIVRA---FDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVD 250 (509)
T ss_pred cHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCC
Confidence 99999999999999998777 466888877665532221 11100 1111111 1222 3699
Q ss_pred EEeecccc-C-----CCChhhHhccc
Q psy8846 414 IFVPAAVE-K-----VITKNNAHKIQ 433 (568)
Q Consensus 414 IliPaAl~-~-----~It~~na~~i~ 433 (568)
|+|=|+.- + .|+++-.+.++
T Consensus 251 VVIetag~pg~~aP~lit~~~v~~mk 276 (509)
T PRK09424 251 IIITTALIPGKPAPKLITAEMVASMK 276 (509)
T ss_pred EEEECCCCCcccCcchHHHHHHHhcC
Confidence 99999973 2 55777777775
No 201
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=24.05 E-value=1e+02 Score=31.92 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=31.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNG 391 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g 391 (568)
.-.|..+|+.|.+.|+|||. .|=..++|.+..++.+
T Consensus 16 SGiG~A~A~~l~~~G~~vvl---~aRR~drL~~la~~~~ 51 (246)
T COG4221 16 SGIGEATARALAEAGAKVVL---AARREERLEALADEIG 51 (246)
T ss_pred chHHHHHHHHHHHCCCeEEE---EeccHHHHHHHHHhhc
Confidence 35799999999999999999 5678888999888865
No 202
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=24.00 E-value=60 Score=31.64 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=19.9
Q ss_pred cCHHHHHHHHHHHCCCeEeEeC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVs 374 (568)
|.+|+++++.|.+.|++|+.+.
T Consensus 13 ~~iG~~la~~l~~~g~~v~~~~ 34 (250)
T TIGR03206 13 GGIGGATCRRFAEEGAKVAVFD 34 (250)
T ss_pred ChHHHHHHHHHHHCCCEEEEec
Confidence 7899999999999999988753
No 203
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=23.99 E-value=1e+02 Score=33.92 Aligned_cols=31 Identities=10% Similarity=0.166 Sum_probs=26.5
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEY 386 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~ 386 (568)
|.+|..+|..|++.|..|++ .++|.+.+...
T Consensus 12 G~~G~~~A~~La~~G~~V~~---~D~~~~~v~~l 42 (415)
T PRK11064 12 GYIGLPTAAAFASRQKQVIG---VDINQHAVDTI 42 (415)
T ss_pred chhhHHHHHHHHhCCCEEEE---EeCCHHHHHHH
Confidence 99999999999999999988 45677776653
No 204
>PLN02206 UDP-glucuronate decarboxylase
Probab=23.92 E-value=1.2e+02 Score=33.55 Aligned_cols=23 Identities=13% Similarity=-0.003 Sum_probs=21.1
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPT 375 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD 375 (568)
|-||+++++.|.+.|.+|+++..
T Consensus 129 GfIGs~Lv~~Ll~~G~~V~~ld~ 151 (442)
T PLN02206 129 GFVGSHLVDRLMARGDSVIVVDN 151 (442)
T ss_pred cHHHHHHHHHHHHCcCEEEEEeC
Confidence 99999999999999999998753
No 205
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=23.82 E-value=98 Score=31.45 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=53.7
Q ss_pred CCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecC-CCCcccccceEEeeccccCCCChhhHhcccc--eEEEecC--
Q psy8846 367 KGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYE-GENLMYEPCDIFVPAAVEKVITKNNAHKIQA--KIIAEAA-- 441 (568)
Q Consensus 367 GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~-~~~ll~~~cDIliPaAl~~~It~~na~~i~A--kiIvE~A-- 441 (568)
|+++++|+|. |.++..++.++.| ...++ .++++..++|+.+=|+-.....+--..-+++ -++|+..
T Consensus 1 ~~eLvaV~D~--~~e~a~~~a~~~g-------~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~gA 71 (229)
T TIGR03855 1 NFEIAAVYDR--NPKDAKELAERCG-------AKIVSDFDEFLPEDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVGA 71 (229)
T ss_pred CeEEEEEECC--CHHHHHHHHHHhC-------CceECCHHHHhcCCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCcc
Confidence 5789999876 7777777766653 23333 4567777899999997655544444444454 5777654
Q ss_pred --CcchHHHHHHHhccCCCcccccCc
Q psy8846 442 --NESVQESLERRFGNVGGRIPVTPS 465 (568)
Q Consensus 442 --N~~~~~~l~~~l~~~GggI~vvPd 465 (568)
+....+.|.+...+.|. .+.+|.
T Consensus 72 lad~e~~~~l~~aA~~~g~-~l~i~s 96 (229)
T TIGR03855 72 LADRELRERLREVARSSGR-KVYIPS 96 (229)
T ss_pred cCCHHHHHHHHHHHHhcCC-EEEECh
Confidence 22223334444455553 455665
No 206
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.79 E-value=66 Score=30.97 Aligned_cols=24 Identities=0% Similarity=-0.204 Sum_probs=21.4
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTH 376 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~ 376 (568)
|.+|.++++.|.+.|++++.++..
T Consensus 16 g~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 16 RGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred chHHHHHHHHHHHCCCeEEEEeCC
Confidence 899999999999999998776655
No 207
>PRK05875 short chain dehydrogenase; Provisional
Probab=23.43 E-value=71 Score=31.90 Aligned_cols=22 Identities=5% Similarity=-0.162 Sum_probs=20.1
Q ss_pred cCHHHHHHHHHHHCCCeEeEeC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVs 374 (568)
|.+|+++++.|.+.|++|+.++
T Consensus 17 g~IG~~la~~l~~~G~~V~~~~ 38 (276)
T PRK05875 17 SGIGKGVAAGLVAAGAAVMIVG 38 (276)
T ss_pred cHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999998854
No 208
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=23.32 E-value=5e+02 Score=27.96 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=28.9
Q ss_pred cCHHHHHHHHHHHC---CCeEeEeCCCCCCHHHHHHHHHhcCCc
Q psy8846 353 GPVSMYLPQIWVQE---KGKCPGLPTHTRKPLALEEYKLDNGTI 393 (568)
Q Consensus 353 GnVG~~~A~~L~~~---GakvvaVsD~GiD~~~L~~~~~~~g~v 393 (568)
|-+|+.+.|.+.+. +.+||+|-|. .|++.+. |.-++.|+
T Consensus 8 GRIGr~~~r~~~~~~~~~~~ivaind~-~~~~~~a-yll~yDS~ 49 (327)
T TIGR01534 8 GRIGRLVLRAILEKQGLDLEVVAINDL-TDLEYLA-YLLKYDSV 49 (327)
T ss_pred ChHHHHHHHHHHhccCCceEEEEEecC-CCHHHHH-HHhcccCC
Confidence 89999999998765 6899999996 5776653 44444443
No 209
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=23.30 E-value=1.7e+02 Score=30.38 Aligned_cols=97 Identities=13% Similarity=0.095 Sum_probs=51.7
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHh----cCCcccC------CC-CeecCC-CCcccccceEEeeccc
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLD----NGTIVGF------PG-AVPYEG-ENLMYEPCDIFVPAAV 420 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~----~g~v~~~------~g-a~~i~~-~~ll~~~cDIliPaAl 420 (568)
|++|..+|..|.+.|..|+.+ +.+.+.+.+..+. .|.+..- .+ .+..+. ++. -.+||+++-|.-
T Consensus 13 G~mG~~iA~~l~~~g~~V~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~aDlVi~av~ 88 (311)
T PRK06130 13 GTMGSGIAALFARKGLQVVLI---DVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAA-VSGADLVIEAVP 88 (311)
T ss_pred CHHHHHHHHHHHhCCCeEEEE---ECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHH-hccCCEEEEecc
Confidence 999999999999999988873 4566666554431 2211110 00 111111 122 248999999976
Q ss_pred cCC-----CChhhHhcccce-EEEecCCcchHHHHHHHh
Q psy8846 421 EKV-----ITKNNAHKIQAK-IIAEAANESVQESLERRF 453 (568)
Q Consensus 421 ~~~-----It~~na~~i~Ak-iIvE~AN~~~~~~l~~~l 453 (568)
+.. +-++..+.++.. +|+-.++......+.+.+
T Consensus 89 ~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~ 127 (311)
T PRK06130 89 EKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAV 127 (311)
T ss_pred CcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhc
Confidence 553 222233333433 555555544333444443
No 210
>PLN02858 fructose-bisphosphate aldolase
Probab=23.30 E-value=78 Score=40.38 Aligned_cols=145 Identities=17% Similarity=0.191 Sum_probs=83.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeecccc-----CCCCh-
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVE-----KVITK- 426 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~-----~~It~- 426 (568)
|++|..+|+.|...|.+|++ .+.+.+++.+.... |+...+..+-+..+|||++-|--. .++..
T Consensus 333 G~MG~~mA~~L~~~G~~V~v---~dr~~~~~~~l~~~--------Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~ 401 (1378)
T PLN02858 333 GAMGFGMASHLLKSNFSVCG---YDVYKPTLVRFENA--------GGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGD 401 (1378)
T ss_pred hHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHHHHc--------CCeecCCHHHHHhcCCEEEEecCChHHHHHHHhch
Confidence 99999999999999999877 45677777666544 333222212234579999976542 23311
Q ss_pred -hhHhccc-ceEEEecCCcc--hHHHHHHHhcc--CCCccccc--C--------------------cHH-------HHhh
Q psy8846 427 -NNAHKIQ-AKIIAEAANES--VQESLERRFGN--VGGRIPVT--P--------------------SES-------FQKR 471 (568)
Q Consensus 427 -~na~~i~-AkiIvE~AN~~--~~~~l~~~l~~--~GggI~vv--P--------------------de~-------~q~~ 471 (568)
.-++.++ -++|++-.... ....+.+.+.. +| +.++ | ++. ++..
T Consensus 402 ~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g--~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~l 479 (1378)
T PLN02858 402 LGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRD--IKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSAL 479 (1378)
T ss_pred hhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCC--cEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHH
Confidence 1223332 36777666633 23344444444 32 2211 1 111 1110
Q ss_pred ---c---cC----CCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhh
Q psy8846 472 ---I---SG----ASEKDIVHSGLDYTMERSARAIMKTAMKYNLGHLDINAH 513 (568)
Q Consensus 472 ---~---~~----~we~e~V~~~L~~~M~~a~~~V~~~a~~~~~~~~dlR~A 513 (568)
. .+ ......+++-|...+..++.+.+..+++.+ +|+.+.
T Consensus 480 g~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~G---ld~~~l 528 (1378)
T PLN02858 480 SEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLG---LNTRKL 528 (1378)
T ss_pred hCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCHHHH
Confidence 0 11 123345666777777888889999999988 676654
No 211
>PRK12744 short chain dehydrogenase; Provisional
Probab=23.28 E-value=88 Score=30.92 Aligned_cols=22 Identities=5% Similarity=0.031 Sum_probs=19.7
Q ss_pred cCHHHHHHHHHHHCCCeEeEeC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVs 374 (568)
|.+|.++|+.|.+.|++++.+.
T Consensus 18 ~gIG~~~a~~l~~~G~~vv~i~ 39 (257)
T PRK12744 18 KNLGGLIARDLAAQGAKAVAIH 39 (257)
T ss_pred chHHHHHHHHHHHCCCcEEEEe
Confidence 7899999999999999977764
No 212
>PRK06194 hypothetical protein; Provisional
Probab=23.26 E-value=1e+02 Score=31.00 Aligned_cols=31 Identities=13% Similarity=-0.079 Sum_probs=23.6
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEY 386 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~ 386 (568)
|.+|+++|+.|++.|++|+.+. .+.+.+.+.
T Consensus 16 ggIG~~la~~l~~~G~~V~~~~---r~~~~~~~~ 46 (287)
T PRK06194 16 SGFGLAFARIGAALGMKLVLAD---VQQDALDRA 46 (287)
T ss_pred cHHHHHHHHHHHHCCCEEEEEe---CChHHHHHH
Confidence 7899999999999999988753 344444443
No 213
>PRK06949 short chain dehydrogenase; Provisional
Probab=23.11 E-value=1.1e+02 Score=29.98 Aligned_cols=31 Identities=19% Similarity=0.167 Sum_probs=24.2
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEY 386 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~ 386 (568)
|.+|+++|+.|.+.|++|++++ .+.+.+.+.
T Consensus 19 g~IG~~~a~~l~~~G~~Vi~~~---r~~~~~~~~ 49 (258)
T PRK06949 19 SGLGARFAQVLAQAGAKVVLAS---RRVERLKEL 49 (258)
T ss_pred cHHHHHHHHHHHHCCCEEEEEe---CCHHHHHHH
Confidence 8999999999999999988853 345555443
No 214
>PRK07677 short chain dehydrogenase; Provisional
Probab=22.95 E-value=77 Score=31.22 Aligned_cols=31 Identities=16% Similarity=0.103 Sum_probs=23.2
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEY 386 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~ 386 (568)
|.+|.++|+.|.+.|++|+.++ -+.+.+.+.
T Consensus 11 ~giG~~ia~~l~~~G~~Vi~~~---r~~~~~~~~ 41 (252)
T PRK07677 11 SGMGKAMAKRFAEEGANVVITG---RTKEKLEEA 41 (252)
T ss_pred ChHHHHHHHHHHHCCCEEEEEe---CCHHHHHHH
Confidence 6899999999999999987742 344444433
No 215
>PRK12828 short chain dehydrogenase; Provisional
Probab=22.91 E-value=77 Score=30.41 Aligned_cols=22 Identities=5% Similarity=-0.011 Sum_probs=20.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVs 374 (568)
|.+|+++++.|.+.|++|++++
T Consensus 17 g~iG~~la~~l~~~G~~v~~~~ 38 (239)
T PRK12828 17 GGLGRATAAWLAARGARVALIG 38 (239)
T ss_pred CcHhHHHHHHHHHCCCeEEEEe
Confidence 8999999999999999988854
No 216
>PRK08507 prephenate dehydrogenase; Validated
Probab=22.66 E-value=1.2e+02 Score=31.08 Aligned_cols=76 Identities=21% Similarity=0.182 Sum_probs=44.3
Q ss_pred cCHHHHHHHHHHHCCC--eEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccccCCCChhhHh
Q psy8846 353 GPVSMYLPQIWVQEKG--KCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAH 430 (568)
Q Consensus 353 GnVG~~~A~~L~~~Ga--kvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~~It~~na~ 430 (568)
|++|..+|+.|.+.|. .|++ .+.+.+.+.... +.|.+... .+.+++. +||+++-|.-...+.+ .+.
T Consensus 9 G~mG~sla~~l~~~g~~~~v~~---~d~~~~~~~~~~-~~g~~~~~-----~~~~~~~--~aD~Vilavp~~~~~~-~~~ 76 (275)
T PRK08507 9 GLMGGSLGLALKEKGLISKVYG---YDHNELHLKKAL-ELGLVDEI-----VSFEELK--KCDVIFLAIPVDAIIE-ILP 76 (275)
T ss_pred CHHHHHHHHHHHhcCCCCEEEE---EcCCHHHHHHHH-HCCCCccc-----CCHHHHh--cCCEEEEeCcHHHHHH-HHH
Confidence 9999999999999985 5555 345666665543 33322111 1233443 4999999865444322 223
Q ss_pred c---cc-ceEEEec
Q psy8846 431 K---IQ-AKIIAEA 440 (568)
Q Consensus 431 ~---i~-AkiIvE~ 440 (568)
. ++ -.+|+..
T Consensus 77 ~l~~l~~~~iv~d~ 90 (275)
T PRK08507 77 KLLDIKENTTIIDL 90 (275)
T ss_pred HHhccCCCCEEEEC
Confidence 3 33 3467664
No 217
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=22.59 E-value=1.4e+02 Score=33.75 Aligned_cols=31 Identities=13% Similarity=-0.019 Sum_probs=26.1
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEY 386 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~ 386 (568)
|..|..+|..|+..|..|+. .+.+.+.+.+.
T Consensus 16 G~MG~gIA~~la~aG~~V~l---~D~~~e~l~~~ 46 (507)
T PRK08268 16 GAMGAGIAQVAAQAGHTVLL---YDARAGAAAAA 46 (507)
T ss_pred CHHHHHHHHHHHhCCCeEEE---EeCCHHHHHHH
Confidence 99999999999999999887 56677776653
No 218
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=22.54 E-value=25 Score=31.88 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=22.1
Q ss_pred cCHHHHHHHHHHH-CCCeEeEeCCC
Q psy8846 353 GPVSMYLPQIWVQ-EKGKCPGLPTH 376 (568)
Q Consensus 353 GnVG~~~A~~L~~-~GakvvaVsD~ 376 (568)
|++|+.+++.+.+ .|..++++.|.
T Consensus 10 GrMG~~i~~~i~~~~~~~lv~~v~~ 34 (124)
T PF01113_consen 10 GRMGRAIAEAILESPGFELVGAVDR 34 (124)
T ss_dssp SHHHHHHHHHHHHSTTEEEEEEEET
T ss_pred CHHHHHHHHHHHhcCCcEEEEEEec
Confidence 8999999999988 89999998876
No 219
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=22.45 E-value=4.1e+02 Score=28.70 Aligned_cols=39 Identities=8% Similarity=0.025 Sum_probs=28.1
Q ss_pred cCHHHHHHHHHHH-CCCeEeEeCCCCCCHHHHHHHHHhcCCc
Q psy8846 353 GPVSMYLPQIWVQ-EKGKCPGLPTHTRKPLALEEYKLDNGTI 393 (568)
Q Consensus 353 GnVG~~~A~~L~~-~GakvvaVsD~GiD~~~L~~~~~~~g~v 393 (568)
|-+|+.+.|.+.+ .+..||||-|. .|.+.+ .|.-++.|+
T Consensus 11 GRIGr~~~r~~~~~~~~~vvaiNd~-~~~~~~-ayll~yDs~ 50 (331)
T PRK15425 11 GRIGRIVFRAAQKRSDIEIVAINDL-LDADYM-AYMLKYDST 50 (331)
T ss_pred ChHHHHHHHHHHHCCCCEEEEEecC-CCHHHH-HHHHccccC
Confidence 8999999999775 47999999996 366543 444444443
No 220
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.40 E-value=80 Score=30.81 Aligned_cols=24 Identities=4% Similarity=-0.170 Sum_probs=20.6
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTH 376 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~ 376 (568)
|.+|+++++.|.+.|++|+.+.+.
T Consensus 14 g~iG~~~a~~l~~~g~~v~~~~~r 37 (250)
T PRK08063 14 RGIGKAIALRLAEEGYDIAVNYAR 37 (250)
T ss_pred chHHHHHHHHHHHCCCEEEEEcCC
Confidence 799999999999999998865433
No 221
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.40 E-value=2.2e+02 Score=30.10 Aligned_cols=65 Identities=15% Similarity=0.257 Sum_probs=45.0
Q ss_pred cC-HHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccc-cCCCChhhHh
Q psy8846 353 GP-VSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAV-EKVITKNNAH 430 (568)
Q Consensus 353 Gn-VG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl-~~~It~~na~ 430 (568)
|+ ||.-+|.+|.+.||+|+.. ++ ....|. -....+||+|-|.. .+.|+.+...
T Consensus 167 s~~VG~pla~lL~~~gatVtv~-~s--~t~~l~----------------------~~~~~ADIVIsAvg~p~~i~~~~vk 221 (286)
T PRK14175 167 SHIVGQPVSKLLLQKNASVTIL-HS--RSKDMA----------------------SYLKDADVIVSAVGKPGLVTKDVVK 221 (286)
T ss_pred CchhHHHHHHHHHHCCCeEEEE-eC--CchhHH----------------------HHHhhCCEEEECCCCCcccCHHHcC
Confidence 56 9999999999999998752 22 000010 13458999999885 4478887643
Q ss_pred cccceEEEecCCcc
Q psy8846 431 KIQAKIIAEAANES 444 (568)
Q Consensus 431 ~i~AkiIvE~AN~~ 444 (568)
. ..+|++.+.++
T Consensus 222 ~--gavVIDvGi~~ 233 (286)
T PRK14175 222 E--GAVIIDVGNTP 233 (286)
T ss_pred C--CcEEEEcCCCc
Confidence 2 57888888876
No 222
>PLN02253 xanthoxin dehydrogenase
Probab=22.33 E-value=95 Score=31.13 Aligned_cols=21 Identities=5% Similarity=0.042 Sum_probs=19.6
Q ss_pred cCHHHHHHHHHHHCCCeEeEe
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGL 373 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaV 373 (568)
|.+|+++|+.|.+.|++|+.+
T Consensus 28 ~gIG~~la~~l~~~G~~v~~~ 48 (280)
T PLN02253 28 TGIGESIVRLFHKHGAKVCIV 48 (280)
T ss_pred chHHHHHHHHHHHcCCEEEEE
Confidence 789999999999999999885
No 223
>PRK12743 oxidoreductase; Provisional
Probab=22.11 E-value=89 Score=30.93 Aligned_cols=24 Identities=4% Similarity=-0.237 Sum_probs=20.8
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTH 376 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~ 376 (568)
|.+|+++|+.|.+.|++|+.+...
T Consensus 12 ~giG~~~a~~l~~~G~~V~~~~~~ 35 (256)
T PRK12743 12 SGIGKACALLLAQQGFDIGITWHS 35 (256)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCC
Confidence 689999999999999999876433
No 224
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=22.08 E-value=44 Score=32.49 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=32.2
Q ss_pred eeEEEEecCCCCCCCCCeeeeCCCCHHHHHHHHHHhhHhhhhcCCCCCCcee
Q psy8846 242 TGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAKA 293 (568)
Q Consensus 242 ~gyrv~h~~~~GP~kGGiR~~p~v~~dev~aLA~~MT~K~Al~~lP~GGaKg 293 (568)
+||.|++-. +.+|..++++.++.+.|+.|+-.|+|-|
T Consensus 32 RGf~v~~a~---------------~~~eal~~art~~PayAvvDlkL~~gsG 68 (182)
T COG4567 32 RGFAVVTAE---------------SVEEALAAARTAPPAYAVVDLKLGDGSG 68 (182)
T ss_pred cCceeEeec---------------cHHHHHHHHhcCCCceEEEEeeecCCCc
Confidence 677777754 8899999999999999999999999655
No 225
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=22.03 E-value=1.2e+02 Score=29.75 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=23.5
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEE 385 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~ 385 (568)
|.+|.++++.|.+.|++|+.++ -+.+.+.+
T Consensus 22 g~iG~~la~~l~~~G~~Vi~~~---r~~~~~~~ 51 (247)
T PRK08945 22 DGIGREAALTYARHGATVILLG---RTEEKLEA 51 (247)
T ss_pred chHHHHHHHHHHHCCCcEEEEe---CCHHHHHH
Confidence 8999999999999999998854 34444433
No 226
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=21.93 E-value=1.3e+02 Score=32.63 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=49.3
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCC-CCeecCCCCcc---cccceEEeeccccCCCCh--
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFP-GAVPYEGENLM---YEPCDIFVPAAVEKVITK-- 426 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~-ga~~i~~~~ll---~~~cDIliPaAl~~~It~-- 426 (568)
|++|.++|+.|.+.|..++.|. -|.+.+....+..| +.-+. ++. +.+.+- -.++|+++-|.-...+|.
T Consensus 9 G~ig~~~a~~L~~~g~~v~vid---~~~~~~~~~~~~~~-~~~~~gd~~--~~~~l~~~~~~~a~~vi~~~~~~~~n~~~ 82 (453)
T PRK09496 9 GQVGYTLAENLSGENNDVTVID---TDEERLRRLQDRLD-VRTVVGNGS--SPDVLREAGAEDADLLIAVTDSDETNMVA 82 (453)
T ss_pred CHHHHHHHHHHHhCCCcEEEEE---CCHHHHHHHHhhcC-EEEEEeCCC--CHHHHHHcCCCcCCEEEEecCChHHHHHH
Confidence 9999999999999999998853 36666665544222 11111 111 111111 236888888765444443
Q ss_pred -hhHhcc--cceEEEecCCcc
Q psy8846 427 -NNAHKI--QAKIIAEAANES 444 (568)
Q Consensus 427 -~na~~i--~AkiIvE~AN~~ 444 (568)
..+..+ ..++|+...+..
T Consensus 83 ~~~~r~~~~~~~ii~~~~~~~ 103 (453)
T PRK09496 83 CQIAKSLFGAPTTIARVRNPE 103 (453)
T ss_pred HHHHHHhcCCCeEEEEECCcc
Confidence 233443 346777665543
No 227
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=21.82 E-value=4.1e+02 Score=27.33 Aligned_cols=104 Identities=10% Similarity=-0.023 Sum_probs=56.8
Q ss_pred cCHHHHHHHHHHHCC-CeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCee-cCCCCcccccceEEeeccccCCCC-----
Q psy8846 353 GPVSMYLPQIWVQEK-GKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVP-YEGENLMYEPCDIFVPAAVEKVIT----- 425 (568)
Q Consensus 353 GnVG~~~A~~L~~~G-akvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~-i~~~~ll~~~cDIliPaAl~~~It----- 425 (568)
|.+|..+++.|.+.| ++|+. .+ -+.+++.+..++.+... .... .+..+.+ .++||+|=|.-.+.-.
T Consensus 132 Gg~a~ai~~aL~~~g~~~V~v-~~--R~~~~a~~l~~~~~~~~---~~~~~~~~~~~~-~~~DivInaTp~g~~~~~~~~ 204 (278)
T PRK00258 132 GGAARAVILPLLDLGVAEITI-VN--RTVERAEELAKLFGALG---KAELDLELQEEL-ADFDLIINATSAGMSGELPLP 204 (278)
T ss_pred cHHHHHHHHHHHHcCCCEEEE-Ee--CCHHHHHHHHHHhhhcc---ceeecccchhcc-ccCCEEEECCcCCCCCCCCCC
Confidence 999999999999999 55555 33 35566655554432110 0111 1111212 4689999887555422
Q ss_pred hhhHhccc-ceEEEecCCcchHHHHHHHhccCCCcccccCc
Q psy8846 426 KNNAHKIQ-AKIIAEAANESVQESLERRFGNVGGRIPVTPS 465 (568)
Q Consensus 426 ~~na~~i~-AkiIvE~AN~~~~~~l~~~l~~~GggI~vvPd 465 (568)
.-....++ -.+|++...+|....|-+.-+++ |..++.-
T Consensus 205 ~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~--G~~~~~G 243 (278)
T PRK00258 205 PLPLSLLRPGTIVYDMIYGPLPTPFLAWAKAQ--GARTIDG 243 (278)
T ss_pred CCCHHHcCCCCEEEEeecCCCCCHHHHHHHHC--cCeecCC
Confidence 11122333 57899999888533332222444 3555544
No 228
>PRK07831 short chain dehydrogenase; Provisional
Probab=21.80 E-value=74 Score=31.54 Aligned_cols=20 Identities=5% Similarity=-0.104 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHCCCeEeEe
Q psy8846 354 PVSMYLPQIWVQEKGKCPGL 373 (568)
Q Consensus 354 nVG~~~A~~L~~~GakvvaV 373 (568)
.+|+.+++.|++.|++|+.+
T Consensus 29 gIG~~ia~~l~~~G~~V~~~ 48 (262)
T PRK07831 29 GIGSATARRALEEGARVVIS 48 (262)
T ss_pred cHHHHHHHHHHHcCCEEEEE
Confidence 49999999999999997763
No 229
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=21.67 E-value=4e+02 Score=31.03 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=54.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCccc----ccceEEeeccccCCCChh-
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMY----EPCDIFVPAAVEKVITKN- 427 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~----~~cDIliPaAl~~~It~~- 427 (568)
|.+|+.+|+.|.+.|.++++| +.|.+++.+.++. |.-.-|-+++ +.++|. .++|.++-|--....|..
T Consensus 409 Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~-g~~v~~GDat---~~~~L~~agi~~A~~vvv~~~d~~~n~~i 481 (621)
T PRK03562 409 GRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKF-GMKVFYGDAT---RMDLLESAGAAKAEVLINAIDDPQTSLQL 481 (621)
T ss_pred ChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhc-CCeEEEEeCC---CHHHHHhcCCCcCCEEEEEeCCHHHHHHH
Confidence 999999999999999998884 4588887776553 3211111222 223332 378888776543333322
Q ss_pred --hHhcc--cceEEEecCCcchHHHHHH
Q psy8846 428 --NAHKI--QAKIIAEAANESVQESLER 451 (568)
Q Consensus 428 --na~~i--~AkiIvE~AN~~~~~~l~~ 451 (568)
++.+. +.++|+=+.|..-...|++
T Consensus 482 ~~~ar~~~p~~~iiaRa~d~~~~~~L~~ 509 (621)
T PRK03562 482 VELVKEHFPHLQIIARARDVDHYIRLRQ 509 (621)
T ss_pred HHHHHHhCCCCeEEEEECCHHHHHHHHH
Confidence 23322 3578886666444344443
No 230
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=21.66 E-value=1.5e+02 Score=30.47 Aligned_cols=103 Identities=12% Similarity=0.052 Sum_probs=55.6
Q ss_pred cCHHHHHHHHHHH-CCCeEeEeCCC------CCCHHHHHHHHHhcCCcccCCCCeecCC-CCcccccceEEeeccccCCC
Q psy8846 353 GPVSMYLPQIWVQ-EKGKCPGLPTH------TRKPLALEEYKLDNGTIVGFPGAVPYEG-ENLMYEPCDIFVPAAVEKVI 424 (568)
Q Consensus 353 GnVG~~~A~~L~~-~GakvvaVsD~------GiD~~~L~~~~~~~g~v~~~~ga~~i~~-~~ll~~~cDIliPaAl~~~I 424 (568)
|++|..+++.+.+ .+.+++++.|. |-|...+... .. .+...+++ +++ ..++||++=|... ..
T Consensus 11 G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~-------~~-~gv~~~~d~~~l-~~~~DvVIdfT~p-~~ 80 (266)
T TIGR00036 11 GRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGI-------GK-VGVPVTDDLEAV-ETDPDVLIDFTTP-EG 80 (266)
T ss_pred CHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCc-------Cc-CCceeeCCHHHh-cCCCCEEEECCCh-HH
Confidence 8999999999986 69999999983 2232222110 00 02222222 233 4568999888743 33
Q ss_pred ChhhHhcc---cceEEEecC--CcchHHHHHHHhccCCCcccccCc
Q psy8846 425 TKNNAHKI---QAKIIAEAA--NESVQESLERRFGNVGGRIPVTPS 465 (568)
Q Consensus 425 t~~na~~i---~AkiIvE~A--N~~~~~~l~~~l~~~GggI~vvPd 465 (568)
+.+++... +..+|+|-- +..-.+.|.+.-++.|..+.+.|.
T Consensus 81 ~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~N 126 (266)
T TIGR00036 81 VLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPN 126 (266)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECc
Confidence 44444433 457777553 221223344433444434555566
No 231
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=21.56 E-value=2e+02 Score=31.85 Aligned_cols=83 Identities=13% Similarity=0.034 Sum_probs=54.4
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCccc--ccceEEeeccc--cCCCChhh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMY--EPCDIFVPAAV--EKVITKNN 428 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~--~~cDIliPaAl--~~~It~~n 428 (568)
|..|..+++.|.+.|++-+.|+.. +.++......+.+. +..++-+++.+ .++||+|=|.. .-+|+.+.
T Consensus 190 G~~a~~va~~L~~~g~~~I~V~nR--t~~ra~~La~~~~~------~~~~~~~~l~~~l~~aDiVI~aT~a~~~vi~~~~ 261 (414)
T PRK13940 190 GQTGELLFRHVTALAPKQIMLANR--TIEKAQKITSAFRN------ASAHYLSELPQLIKKADIIIAAVNVLEYIVTCKY 261 (414)
T ss_pred cHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHHhcC------CeEecHHHHHHHhccCCEEEECcCCCCeeECHHH
Confidence 999999999999999876666655 44555555555321 22232233322 46999998875 45788766
Q ss_pred HhcccceEEEecCCcc
Q psy8846 429 AHKIQAKIIAEAANES 444 (568)
Q Consensus 429 a~~i~AkiIvE~AN~~ 444 (568)
... +-.++++-|++.
T Consensus 262 ~~~-~~~~~iDLavPR 276 (414)
T PRK13940 262 VGD-KPRVFIDISIPQ 276 (414)
T ss_pred hCC-CCeEEEEeCCCC
Confidence 532 346899999853
No 232
>PRK07023 short chain dehydrogenase; Provisional
Probab=21.53 E-value=83 Score=30.75 Aligned_cols=22 Identities=14% Similarity=0.071 Sum_probs=20.2
Q ss_pred cCHHHHHHHHHHHCCCeEeEeC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVs 374 (568)
|.+|.++|+.|.+.|++|+.++
T Consensus 11 ggiG~~ia~~l~~~G~~v~~~~ 32 (243)
T PRK07023 11 RGLGAALAEQLLQPGIAVLGVA 32 (243)
T ss_pred cchHHHHHHHHHhCCCEEEEEe
Confidence 7999999999999999998864
No 233
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=21.46 E-value=98 Score=31.36 Aligned_cols=22 Identities=9% Similarity=-0.074 Sum_probs=19.1
Q ss_pred cCHHHHHHHHHHHCCC-eEeEeC
Q psy8846 353 GPVSMYLPQIWVQEKG-KCPGLP 374 (568)
Q Consensus 353 GnVG~~~A~~L~~~Ga-kvvaVs 374 (568)
|.+|+++++.|.+.|. .|+++.
T Consensus 8 G~iG~~l~~~L~~~g~~~v~~~~ 30 (314)
T TIGR02197 8 GFIGSNLVKALNERGITDILVVD 30 (314)
T ss_pred chhhHHHHHHHHHcCCceEEEEe
Confidence 8899999999999998 576653
No 234
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=21.44 E-value=1.3e+02 Score=29.64 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=23.3
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEE 385 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~ 385 (568)
|.+|+++|+.|.+.|++|+.+ +-+.+.+.+
T Consensus 20 g~iG~~ia~~l~~~G~~V~~~---~r~~~~~~~ 49 (255)
T PRK07523 20 QGIGYALAEGLAQAGAEVILN---GRDPAKLAA 49 (255)
T ss_pred chHHHHHHHHHHHcCCEEEEE---eCCHHHHHH
Confidence 899999999999999998874 234554443
No 235
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=21.41 E-value=78 Score=30.04 Aligned_cols=86 Identities=16% Similarity=0.223 Sum_probs=45.8
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCccc-----------CCCCeec----CCCCcc---cccceE
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVG-----------FPGAVPY----EGENLM---YEPCDI 414 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~-----------~~ga~~i----~~~~ll---~~~cDI 414 (568)
|+||..+++.|..+|++++..- .....+.+.......... |...... ..+..| -.++|+
T Consensus 29 G~vg~gA~~~~~~lGa~v~~~d---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~d~ 105 (168)
T PF01262_consen 29 GRVGQGAAEIAKGLGAEVVVPD---ERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEFIAPADI 105 (168)
T ss_dssp SHHHHHHHHHHHHTT-EEEEEE---SSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHHHHH-SE
T ss_pred CHHHHHHHHHHhHCCCEEEecc---CCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHHHhhCcE
Confidence 9999999999999999998843 345554443332221111 1000000 011122 246888
Q ss_pred Eeeccc------cCCCChhhHhccc-ceEEEecC
Q psy8846 415 FVPAAV------EKVITKNNAHKIQ-AKIIAEAA 441 (568)
Q Consensus 415 liPaAl------~~~It~~na~~i~-AkiIvE~A 441 (568)
++=+++ ...||.+.+.+++ =.+|++-+
T Consensus 106 vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 106 VIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp EEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred EeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 884443 2478888888775 34555543
No 236
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=21.41 E-value=90 Score=34.36 Aligned_cols=26 Identities=8% Similarity=0.185 Sum_probs=23.2
Q ss_pred eeec----cCHHHHHHHHHHHCCCeEeEeC
Q psy8846 349 KFSS----GPVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 349 R~~~----GnVG~~~A~~L~~~GakvvaVs 374 (568)
||+. |..|.++|+.|.+.||+|+.++
T Consensus 206 R~isN~SSG~~G~aiA~~l~~~Ga~V~~v~ 235 (399)
T PRK05579 206 RYITNRSSGKMGYALARAAARRGADVTLVS 235 (399)
T ss_pred eeeccCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 6665 9999999999999999998875
No 237
>PRK07890 short chain dehydrogenase; Provisional
Probab=21.36 E-value=1.3e+02 Score=29.43 Aligned_cols=31 Identities=13% Similarity=-0.024 Sum_probs=23.8
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEY 386 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~ 386 (568)
|.+|+++|+.|++.|++|+.++ .+.+.+.+.
T Consensus 15 ~~IG~~la~~l~~~G~~V~~~~---r~~~~~~~~ 45 (258)
T PRK07890 15 PGLGRTLAVRAARAGADVVLAA---RTAERLDEV 45 (258)
T ss_pred CcHHHHHHHHHHHcCCEEEEEe---CCHHHHHHH
Confidence 7899999999999999988753 344444443
No 238
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=21.34 E-value=78 Score=31.56 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=21.6
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTH 376 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~ 376 (568)
|.+|+++++.|.+.|.+|++++-.
T Consensus 8 G~iG~~l~~~L~~~g~~V~~~~r~ 31 (292)
T TIGR01777 8 GFIGRALTQRLTKDGHEVTILTRS 31 (292)
T ss_pred chhhHHHHHHHHHcCCEEEEEeCC
Confidence 899999999999999999997743
No 239
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=21.29 E-value=1.5e+02 Score=29.78 Aligned_cols=37 Identities=8% Similarity=0.131 Sum_probs=29.6
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNG 391 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g 391 (568)
|.||..=++.|.+.||+|+.||+.= .+++.....+.+
T Consensus 21 G~va~rKa~~ll~~ga~v~Vvs~~~--~~el~~~~~~~~ 57 (210)
T COG1648 21 GSVALRKARLLLKAGADVTVVSPEF--EPELKALIEEGK 57 (210)
T ss_pred CHHHHHHHHHHHhcCCEEEEEcCCc--cHHHHHHHHhcC
Confidence 9999999999999999999999772 455555555443
No 240
>PRK05876 short chain dehydrogenase; Provisional
Probab=21.27 E-value=1.3e+02 Score=30.60 Aligned_cols=31 Identities=3% Similarity=-0.057 Sum_probs=24.2
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEY 386 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~ 386 (568)
|-+|+++|+.|++.|++|+.+ +.+.+.+.+.
T Consensus 16 ~gIG~ala~~La~~G~~Vv~~---~r~~~~l~~~ 46 (275)
T PRK05876 16 SGIGLATGTEFARRGARVVLG---DVDKPGLRQA 46 (275)
T ss_pred chHHHHHHHHHHHCCCEEEEE---eCCHHHHHHH
Confidence 789999999999999998763 3455555544
No 241
>CHL00194 ycf39 Ycf39; Provisional
Probab=21.21 E-value=76 Score=32.88 Aligned_cols=22 Identities=14% Similarity=0.071 Sum_probs=20.8
Q ss_pred cCHHHHHHHHHHHCCCeEeEeC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVs 374 (568)
|.+|+++++.|.+.|.+|++++
T Consensus 10 G~iG~~lv~~Ll~~g~~V~~l~ 31 (317)
T CHL00194 10 GTLGRQIVRQALDEGYQVRCLV 31 (317)
T ss_pred cHHHHHHHHHHHHCCCeEEEEE
Confidence 9999999999999999999876
No 242
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=21.19 E-value=95 Score=30.72 Aligned_cols=22 Identities=0% Similarity=-0.240 Sum_probs=20.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVs 374 (568)
|.+|.++|+.|.+.|++|+.++
T Consensus 25 ~gIG~~ia~~l~~~G~~v~~~~ 46 (258)
T PRK06935 25 TGLGQGYAVALAKAGADIIITT 46 (258)
T ss_pred chHHHHHHHHHHHCCCEEEEEe
Confidence 7999999999999999988754
No 243
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.16 E-value=98 Score=31.00 Aligned_cols=20 Identities=0% Similarity=-0.039 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHCCCeEeEe
Q psy8846 354 PVSMYLPQIWVQEKGKCPGL 373 (568)
Q Consensus 354 nVG~~~A~~L~~~GakvvaV 373 (568)
-+|..+|+.|++.|++|+..
T Consensus 19 GIG~a~a~~l~~~G~~v~~~ 38 (261)
T PRK08690 19 SIAYGIAKACREQGAELAFT 38 (261)
T ss_pred cHHHHHHHHHHHCCCEEEEE
Confidence 58999999999999999874
No 244
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=20.93 E-value=1e+02 Score=30.23 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=22.5
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLAL 383 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L 383 (568)
+-+|..+|+.|++.|++|+.+ +.+.+++
T Consensus 6 ~GiG~aia~~l~~~Ga~V~~~---~~~~~~~ 33 (241)
T PF13561_consen 6 SGIGRAIARALAEEGANVILT---DRNEEKL 33 (241)
T ss_dssp SHHHHHHHHHHHHTTEEEEEE---ESSHHHH
T ss_pred CChHHHHHHHHHHCCCEEEEE---eCChHHH
Confidence 357999999999999999884 4566653
No 245
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.90 E-value=1.7e+02 Score=30.77 Aligned_cols=65 Identities=14% Similarity=0.231 Sum_probs=39.2
Q ss_pred cC-HHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeecc-ccCCCChhhHh
Q psy8846 353 GP-VSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAA-VEKVITKNNAH 430 (568)
Q Consensus 353 Gn-VG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaA-l~~~It~~na~ 430 (568)
|+ ||..+|..|.+.|| -|.|+++ ....|.++ + .++||+|-|. ..+.|+.+...
T Consensus 168 gg~vGkpia~~L~~~ga-tVtv~~~--~t~~L~~~---------------------~-~~aDIvI~AtG~~~~v~~~~lk 222 (283)
T PRK14192 168 SAILGKPMAMMLLNANA-TVTICHS--RTQNLPEL---------------------V-KQADIIVGAVGKPELIKKDWIK 222 (283)
T ss_pred cHHHHHHHHHHHHhCCC-EEEEEeC--CchhHHHH---------------------h-ccCCEEEEccCCCCcCCHHHcC
Confidence 66 99999999999999 5555654 22222211 1 4789998887 24456555432
Q ss_pred cccceEEEecCCcc
Q psy8846 431 KIQAKIIAEAANES 444 (568)
Q Consensus 431 ~i~AkiIvE~AN~~ 444 (568)
. ..+|++..-+|
T Consensus 223 ~--gavViDvg~n~ 234 (283)
T PRK14192 223 Q--GAVVVDAGFHP 234 (283)
T ss_pred C--CCEEEEEEEee
Confidence 1 34555554333
No 246
>PRK07063 short chain dehydrogenase; Provisional
Probab=20.89 E-value=1.3e+02 Score=29.59 Aligned_cols=32 Identities=6% Similarity=0.003 Sum_probs=24.7
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYK 387 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~ 387 (568)
|-+|.++|+.|++.|++|+.++ .+.+.+.+..
T Consensus 17 ~gIG~~~a~~l~~~G~~vv~~~---r~~~~~~~~~ 48 (260)
T PRK07063 17 QGIGAAIARAFAREGAAVALAD---LDAALAERAA 48 (260)
T ss_pred chHHHHHHHHHHHCCCEEEEEe---CCHHHHHHHH
Confidence 7899999999999999988743 3555555443
No 247
>PRK12939 short chain dehydrogenase; Provisional
Probab=20.88 E-value=1.5e+02 Score=28.66 Aligned_cols=30 Identities=3% Similarity=-0.100 Sum_probs=23.6
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEE 385 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~ 385 (568)
|.+|+++|+.|.+.|++|+.++ -+.+.+.+
T Consensus 17 g~iG~~la~~l~~~G~~v~~~~---r~~~~~~~ 46 (250)
T PRK12939 17 RGLGAAFAEALAEAGATVAFND---GLAAEARE 46 (250)
T ss_pred ChHHHHHHHHHHHcCCEEEEEe---CCHHHHHH
Confidence 8999999999999999998863 34444443
No 248
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=20.87 E-value=90 Score=30.16 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=20.3
Q ss_pred cCHHHHHHHHHHHCCCeEeEeC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVs 374 (568)
|.+|.++|+.|.+.|+++++++
T Consensus 10 g~iG~~la~~l~~~G~~v~~~~ 31 (242)
T TIGR01829 10 GGIGTAICQRLAKDGYRVAANC 31 (242)
T ss_pred ChHHHHHHHHHHHCCCEEEEEe
Confidence 8899999999999999998865
No 249
>PRK07074 short chain dehydrogenase; Provisional
Probab=20.57 E-value=1.4e+02 Score=29.27 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=24.7
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYK 387 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~ 387 (568)
|.+|.++|+.|.+.|++|+.++ -+.+.+.+..
T Consensus 12 ~~iG~~la~~L~~~g~~v~~~~---r~~~~~~~~~ 43 (257)
T PRK07074 12 GGIGQALARRFLAAGDRVLALD---IDAAALAAFA 43 (257)
T ss_pred chHHHHHHHHHHHCCCEEEEEe---CCHHHHHHHH
Confidence 7899999999999999988853 4555554443
No 250
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.57 E-value=1.5e+02 Score=30.41 Aligned_cols=29 Identities=10% Similarity=0.000 Sum_probs=24.4
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALE 384 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~ 384 (568)
|.+|..+|..|...|..|+. .+.|.+.+.
T Consensus 12 G~mG~~ia~~la~~g~~V~~---~d~~~~~~~ 40 (282)
T PRK05808 12 GTMGNGIAQVCAVAGYDVVM---VDISDAAVD 40 (282)
T ss_pred CHHHHHHHHHHHHCCCceEE---EeCCHHHHH
Confidence 99999999999999998887 356776664
No 251
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=20.45 E-value=57 Score=28.49 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=22.6
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTH 376 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~ 376 (568)
|+||..-++.|.+.||+|+.||..
T Consensus 16 G~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 16 GPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp SHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CHHHHHHHHHHHhCCCEEEEECCc
Confidence 999999999999999999999865
No 252
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=20.45 E-value=2.2e+02 Score=28.98 Aligned_cols=84 Identities=13% Similarity=0.144 Sum_probs=47.4
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCC-----eecC-CCCcccccceEEeeccccCCCCh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGA-----VPYE-GENLMYEPCDIFVPAAVEKVITK 426 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga-----~~i~-~~~ll~~~cDIliPaAl~~~It~ 426 (568)
|++|..+|..|++.|..|+.+.- +.+.+....+ .|.-.. .+. ...+ .+++ .+||+++-|--...+ .
T Consensus 9 G~~G~~~a~~L~~~g~~V~~~~r---~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~--~~~d~vila~k~~~~-~ 80 (304)
T PRK06522 9 GAIGGLFGAALAQAGHDVTLVAR---RGAHLDALNE-NGLRLE-DGEITVPVLAADDPAEL--GPQDLVILAVKAYQL-P 80 (304)
T ss_pred CHHHHHHHHHHHhCCCeEEEEEC---ChHHHHHHHH-cCCccc-CCceeecccCCCChhHc--CCCCEEEEecccccH-H
Confidence 99999999999999998877542 3344444433 232110 110 1111 1122 689999888554433 3
Q ss_pred hhHhccc----c-eEEEecCCcc
Q psy8846 427 NNAHKIQ----A-KIIAEAANES 444 (568)
Q Consensus 427 ~na~~i~----A-kiIvE~AN~~ 444 (568)
+-++.++ . ..|+-..|+-
T Consensus 81 ~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 81 AALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred HHHHHHhhhcCCCCEEEEecCCC
Confidence 3344442 2 3566677754
No 253
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=20.40 E-value=1.7e+02 Score=30.24 Aligned_cols=72 Identities=11% Similarity=0.125 Sum_probs=47.6
Q ss_pred cCHHHHHHHHHHHC--CCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeeccccCCCChhhHh
Q psy8846 353 GPVSMYLPQIWVQE--KGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAH 430 (568)
Q Consensus 353 GnVG~~~A~~L~~~--GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~~It~~na~ 430 (568)
|+.|..+.+++.+- .++.++|.|.+ .++..+..... .+-...+-++++ .+.|+++=||....+-+---+
T Consensus 9 GaIG~~l~e~v~~~~~~~e~v~v~D~~--~ek~~~~~~~~------~~~~~s~ide~~-~~~DlvVEaAS~~Av~e~~~~ 79 (255)
T COG1712 9 GAIGKFLLELVRDGRVDFELVAVYDRD--EEKAKELEASV------GRRCVSDIDELI-AEVDLVVEAASPEAVREYVPK 79 (255)
T ss_pred cHHHHHHHHHHhcCCcceeEEEEecCC--HHHHHHHHhhc------CCCccccHHHHh-hccceeeeeCCHHHHHHHhHH
Confidence 89999999988653 69999999984 44444433322 111112335666 899999999988777655554
Q ss_pred ccc
Q psy8846 431 KIQ 433 (568)
Q Consensus 431 ~i~ 433 (568)
-++
T Consensus 80 ~L~ 82 (255)
T COG1712 80 ILK 82 (255)
T ss_pred HHh
Confidence 444
No 254
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=20.30 E-value=2e+02 Score=29.60 Aligned_cols=102 Identities=14% Similarity=0.072 Sum_probs=57.5
Q ss_pred cCHHHHHHHHHHHC-CCeEeEeCCCCCCHHHHHHHHHhcCCcccCCCCeecC-CCCcccccceEEeeccccCCCChhhHh
Q psy8846 353 GPVSMYLPQIWVQE-KGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYE-GENLMYEPCDIFVPAAVEKVITKNNAH 430 (568)
Q Consensus 353 GnVG~~~A~~L~~~-GakvvaVsD~GiD~~~L~~~~~~~g~v~~~~ga~~i~-~~~ll~~~cDIliPaAl~~~It~~na~ 430 (568)
|++|...++.|.+. +..+++|.+..-...+..+.... +...++ .+++ ..++|+++=|+-.... .+.+.
T Consensus 10 G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~--------~~~~~~d~~~l-~~~~DvVve~t~~~~~-~e~~~ 79 (265)
T PRK13303 10 GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGE--------AVRVVSSVDAL-PQRPDLVVECAGHAAL-KEHVV 79 (265)
T ss_pred CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhcc--------CCeeeCCHHHh-ccCCCEEEECCCHHHH-HHHHH
Confidence 99999999999875 78888888653333332221110 222232 2345 6779999999876543 44544
Q ss_pred cc---cceEEEecC----CcchHHHHHHHhccCCCcccccCc
Q psy8846 431 KI---QAKIIAEAA----NESVQESLERRFGNVGGRIPVTPS 465 (568)
Q Consensus 431 ~i---~AkiIvE~A----N~~~~~~l~~~l~~~GggI~vvPd 465 (568)
.+ ...+|++.. .....+.|.+...+.|. .+++|.
T Consensus 80 ~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~-~l~v~s 120 (265)
T PRK13303 80 PILKAGIDCAVISVGALADEALRERLEQAAEAGGA-RLHLLS 120 (265)
T ss_pred HHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCC-EEEEeC
Confidence 33 356777521 12223444444445553 445555
No 255
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=20.28 E-value=1.3e+02 Score=29.49 Aligned_cols=30 Identities=0% Similarity=-0.159 Sum_probs=23.4
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEE 385 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~ 385 (568)
|.+|+++++.|.+.|++|+.++ -+.+.+.+
T Consensus 17 g~iG~~la~~l~~~G~~v~~~~---r~~~~~~~ 46 (262)
T PRK13394 17 SGIGKEIALELARAGAAVAIAD---LNQDGANA 46 (262)
T ss_pred ChHHHHHHHHHHHCCCeEEEEe---CChHHHHH
Confidence 8999999999999999998753 34444443
No 256
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=20.24 E-value=1.4e+02 Score=29.12 Aligned_cols=30 Identities=10% Similarity=-0.016 Sum_probs=23.5
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEE 385 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~ 385 (568)
|.+|+++|+.|.+.|++|+.+. -+.+.+.+
T Consensus 14 g~iG~~la~~l~~~g~~v~~~~---r~~~~~~~ 43 (258)
T PRK12429 14 SGIGLEIALALAKEGAKVVIAD---LNDEAAAA 43 (258)
T ss_pred chHHHHHHHHHHHCCCeEEEEe---CCHHHHHH
Confidence 8999999999999999998853 34444443
No 257
>TIGR02395 rpoN_sigma RNA polymerase sigma-54 factor. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called sigma-54, or RpoN (unrelated to sigma 70-type factors such as RpoD/SigA). RpoN is responsible for enhancer-dependent transcription, and its presence characteristically is associated with varied panels of activators, most of which are enhancer-binding proteins (but see Brahmachary, et al., PubMed:15231786). RpoN may be responsible for transcription of nitrogen fixation genes, flagellins, pilins, etc., and synonyms for the gene symbol rpoN, such as ntrA, reflect these observations
Probab=20.22 E-value=2.8e+02 Score=30.94 Aligned_cols=156 Identities=18% Similarity=0.116 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccceEEeecc---ccCCCChhhHhcccceEEEecCCcchHHHHHHHh
Q psy8846 377 TRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAA---VEKVITKNNAHKIQAKIIAEAANESVQESLERRF 453 (568)
Q Consensus 377 GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaA---l~~~It~~na~~i~AkiIvE~AN~~~~~~l~~~l 453 (568)
|++.+.+.++.+.-.++.-+||...-+....-..-.||+|=-- +.=.+|+++.++|+- |....+.+...
T Consensus 193 ~is~~~v~~~~~~I~~L~P~Pg~~~~~~~~~~yi~PDv~V~~~~~~~~v~ln~~~~P~l~i-------~~~y~~~~~~~- 264 (429)
T TIGR02395 193 GLSEEELKEALDLIKSLSPKPGKEFADPEEVEYVIPDVIVTKKNGEWVVELNGRSLPELRI-------NEEYFKLLKDA- 264 (429)
T ss_pred CcCHHHHHHHHHHHhCCCCCCcccccCCCCCCccCCCEEEEEECCEEEEEEcCCCCceEEE-------CHHHHHHHHhc-
Confidence 7888888888887777778888654332133356677776322 122455555555531 22222222111
Q ss_pred ccCCCcccccCcHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---cCC---CCChhhhhhhheeec--ccCc
Q psy8846 454 GNVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMKY---NLG---HLDINAHACVTGKPI--NQGG 525 (568)
Q Consensus 454 ~~~GggI~vvPde~~q~~~~~~we~e~V~~~L~~~M~~a~~~V~~~a~~~---~~~---~~dlR~AAyi~Ai~i--~a~~ 525 (568)
... . .-.+.-+......|=..-+..| ..++.+..+.|++..+.| +.. -..|++.|-.+++-. =-.-
T Consensus 265 ---~~~-~-~~~ylk~k~~~A~~li~~i~~R-~~TL~~v~~~Iv~~Q~~Ff~~G~~~LkPLtlkdiA~~lglheSTVSRa 338 (429)
T TIGR02395 265 ---EKE-A-AAQYLKQKLKEARWLIKALEQR-EETLLKVAEAIVEHQKDFFLGGPAALKPLTLREVAEELGLHESTISRA 338 (429)
T ss_pred ---cch-H-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcccCcCCcHHHHHHHhCCCccchhhh
Confidence 000 0 0001111222233433333333 344555566666665553 211 368889999998884 2344
Q ss_pred ccceeecCCCchhhhHHHhhcC
Q psy8846 526 IHGRISATGRGVFHGLENFIME 547 (568)
Q Consensus 526 ~~G~~~atg~gv~~~~~~~~~~ 547 (568)
+.|-|-.|.+|+| -++.||..
T Consensus 339 v~~Kyi~tp~Gi~-~lk~FFs~ 359 (429)
T TIGR02395 339 INNKYLQTPRGVF-ELKYFFSR 359 (429)
T ss_pred hcCceEecCCceE-EHHHhcCC
Confidence 6699999999998 78999975
No 258
>PRK07985 oxidoreductase; Provisional
Probab=20.17 E-value=1.2e+02 Score=31.03 Aligned_cols=21 Identities=5% Similarity=-0.034 Sum_probs=19.4
Q ss_pred cCHHHHHHHHHHHCCCeEeEe
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGL 373 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaV 373 (568)
|.+|+++|+.|++.|++|+.+
T Consensus 59 ~gIG~aia~~L~~~G~~Vi~~ 79 (294)
T PRK07985 59 SGIGRAAAIAYAREGADVAIS 79 (294)
T ss_pred CcHHHHHHHHHHHCCCEEEEe
Confidence 799999999999999999874
No 259
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=20.17 E-value=2e+02 Score=27.43 Aligned_cols=42 Identities=12% Similarity=0.157 Sum_probs=33.1
Q ss_pred cCHHHHHHHHHHH-CCCeEeEeCCCCCCHHHHHHHHHhcCCccc
Q psy8846 353 GPVSMYLPQIWVQ-EKGKCPGLPTHTRKPLALEEYKLDNGTIVG 395 (568)
Q Consensus 353 GnVG~~~A~~L~~-~GakvvaVsD~GiD~~~L~~~~~~~g~v~~ 395 (568)
|..|+.+++.+.. ....+|+|.|...|++.+.-. .++.|+.+
T Consensus 9 GRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~L-lkyDs~~G 51 (151)
T PF00044_consen 9 GRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYL-LKYDSVHG 51 (151)
T ss_dssp SHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHH-HHEETTTE
T ss_pred CcccHHHHHhhcccceEEEEEEecccccchhhhhh-hhcccccc
Confidence 8999999999984 679999999999898876544 34555544
No 260
>PRK05854 short chain dehydrogenase; Provisional
Probab=20.10 E-value=80 Score=32.81 Aligned_cols=30 Identities=10% Similarity=-0.046 Sum_probs=23.5
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCCCCHHHHHH
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEE 385 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~GiD~~~L~~ 385 (568)
|-+|.++|+.|++.|++|+.+ +-+.+++.+
T Consensus 24 ~GIG~~~a~~La~~G~~Vil~---~R~~~~~~~ 53 (313)
T PRK05854 24 DGLGLGLARRLAAAGAEVILP---VRNRAKGEA 53 (313)
T ss_pred ChHHHHHHHHHHHCCCEEEEE---eCCHHHHHH
Confidence 789999999999999999875 345554443
No 261
>PRK06841 short chain dehydrogenase; Provisional
Probab=20.04 E-value=94 Score=30.48 Aligned_cols=22 Identities=5% Similarity=0.190 Sum_probs=20.2
Q ss_pred cCHHHHHHHHHHHCCCeEeEeC
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLP 374 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVs 374 (568)
|.+|+++|+.|.+.|++|+.++
T Consensus 25 ~~IG~~la~~l~~~G~~Vi~~~ 46 (255)
T PRK06841 25 SGIGHAIAELFAAKGARVALLD 46 (255)
T ss_pred ChHHHHHHHHHHHCCCEEEEEe
Confidence 8999999999999999988764
No 262
>PRK14851 hypothetical protein; Provisional
Probab=20.01 E-value=2.3e+02 Score=33.51 Aligned_cols=89 Identities=10% Similarity=0.018 Sum_probs=48.0
Q ss_pred cCHHHHHHHHHHHCCCeEeEeCCCC-CCHHHHHHHH-HhcCCcccCCCCeecCCCCcccccceEEeeccccCCCChhhHh
Q psy8846 353 GPVSMYLPQIWVQEKGKCPGLPTHT-RKPLALEEYK-LDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAH 430 (568)
Q Consensus 353 GnVG~~~A~~L~~~GakvvaVsD~G-iD~~~L~~~~-~~~g~v~~~~ga~~i~~~~ll~~~cDIliPaAl~~~It~~na~ 430 (568)
|-||+++|+.|+..|..=+.+.|.+ ++...|.+.. .....| |-++++... +.+.+...++=|= +...-|+.+|+.
T Consensus 52 GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dv-G~~Kv~v~~-~~l~~inP~~~I~-~~~~~i~~~n~~ 128 (679)
T PRK14851 52 GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSF-GRPKLAVMK-EQALSINPFLEIT-PFPAGINADNMD 128 (679)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhC-CCHHHHHHH-HHHHHhCCCCeEE-EEecCCChHHHH
Confidence 8999999999999999888888872 2333332211 000001 112222111 1222222222221 234456777876
Q ss_pred cc--cceEEEecCCcc
Q psy8846 431 KI--QAKIIAEAANES 444 (568)
Q Consensus 431 ~i--~AkiIvE~AN~~ 444 (568)
.+ .+-+|+++..+.
T Consensus 129 ~~l~~~DvVid~~D~~ 144 (679)
T PRK14851 129 AFLDGVDVVLDGLDFF 144 (679)
T ss_pred HHHhCCCEEEECCCCC
Confidence 65 578888888764
Done!