RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8846
(568 letters)
>gnl|CDD|202408 pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydrogenase,
dimerisation domain.
Length = 131
Score = 161 bits (409), Expect = 3e-47
Identities = 50/112 (44%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 221 CDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFK 280
+ +I++ PVR D G+ E + GYR QH+T P KGGIRF V+ +EVK L+ MT+K
Sbjct: 1 PERVIQVRVPVRMDDGEVEGLRGYRVQHNTALGPAKGGIRFHPYVTLEEVKRLAFGMTYK 60
Query: 281 CACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPG 332
A +PFGG K GI +PK S+ ELE++TR F EL IG + +P
Sbjct: 61 NALAGLPFGGGKGGIIGDPKGLSDAELERLTRAFGRELES--IIGPGRDIPA 110
Score = 54.8 bits (133), Expect = 3e-09
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 110 CDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKG 146
+ +I++ PVR D G+ E + GYR QH+T P KG
Sbjct: 1 PERVIQVRVPVRMDDGEVEGLRGYRVQHNTALGPAKG 37
>gnl|CDD|223411 COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino
acid transport and metabolism].
Length = 411
Score = 133 bits (337), Expect = 5e-34
Identities = 45/109 (41%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 224 IIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCAC 283
+I++ PVR D G ++ GYR QH++ P KGG+RF V+ +EVKALS MT K A
Sbjct: 34 VIQVRIPVRMDDGSVKVFRGYRVQHNSALGPYKGGVRFHPYVTLEEVKALSFWMTLKNAL 93
Query: 284 VDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPG 332
+P+GG K GI ++PK S+ ELE+++R F + + IG +P
Sbjct: 94 AGLPYGGGKGGIIVDPKGLSDGELERLSRAFGRAIYR--LIGPDTDIPA 140
Score = 76.1 bits (188), Expect = 9e-15
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 17/137 (12%)
Query: 382 ALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAA 441
AL E K G++ + GA E L+ CDI +P A+E VIT++NA +++AKI+ E A
Sbjct: 253 ALLELKERRGSVAEYAGAEYITNEELLEVDCDILIPCALENVITEDNADQLKAKIVVEGA 312
Query: 442 N-----ESVQESLER--RFG-----NVGGRIPVTPS--ESFQKRISGASEKDIVHSGLDY 487
N E+ + LER N GG V S E Q ++ V L+
Sbjct: 313 NGPTTPEADEILLERGILVVPDILANAGG---VIVSYLEWVQNAQGLYWTEEEVDEKLER 369
Query: 488 TMERSARAIMKTAMKYN 504
M + A+ + A +Y
Sbjct: 370 IMVNAFEAVYQAAKEYG 386
Score = 48.8 bits (117), Expect = 5e-06
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 11/74 (14%)
Query: 495 AIMKTAMKYNLGHLDINAHACVTGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMV 554
A M +G+ +A TGKP+ GG GR ATG GVF+ + +
Sbjct: 151 AWMMDEYSKIVGN---SAPGVFTGKPLELGGSLGRSEATGYGVFYAIR---EALKALGD- 203
Query: 555 GTTPGWGGKTFIVQ 568
G VQ
Sbjct: 204 ----DLEGARVAVQ 213
Score = 41.1 bits (97), Expect = 0.001
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 113 IIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKG 146
+I++ PVR D G ++ GYR QH++ P KG
Sbjct: 34 VIQVRIPVRMDDGSVKVFRGYRVQHNSALGPYKG 67
>gnl|CDD|133445 cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain of glutamate
dehydrogenase, subgroup 1. Amino acid dehydrogenase
(DH) is a widely distributed family of enzymes that
catalyzes the oxidative deamination of an amino acid to
its keto acid and ammonia with concomitant reduction of
NADP+. Glutamate DH is a multidomain enzyme that
catalyzes the reaction from glutamate to 2-oxyoglutarate
and ammonia in the presence of NAD or NADP. It is
present in all organisms. Enzymes involved in ammonia
assimilation are typically NADP+-dependent, while those
involved in glutamate catabolism are generally
NAD+-dependent. Amino acid DH-like NAD(P)-binding
domains are members of the Rossmann fold superfamily and
include glutamate, leucine, and phenylalanine DHs,
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
DH-like proteins, malate oxidoreductases, and glutamyl
tRNA reductase. Amino acid DHs catalyze the deamination
of amino acids to keto acids with NAD(P)+ as a cofactor.
The NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha -beta-alpha configuration.
NAD binding involves numerous hydrogen and van der Waals
contacts.
Length = 227
Score = 119 bits (302), Expect = 5e-31
Identities = 52/138 (37%), Positives = 73/138 (52%), Gaps = 17/138 (12%)
Query: 382 ALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAA 441
AL YK ++G+++GFPGA E L+ CDI +PAA+E IT +NA +I+AKII EAA
Sbjct: 77 ALLAYKKEHGSVLGFPGAERITNEELLELDCDILIPAALENQITADNADRIKAKIIVEAA 136
Query: 442 NESV----QESLERR--------FGNVGGRIPVTPS--ESFQKRISGASEKDIVHSGLDY 487
N E L R N GG VT S E Q +++ V+S L+
Sbjct: 137 NGPTTPEADEILHERGVLVVPDILANAGG---VTVSYFEWVQNLQGFYWDEEEVNSRLET 193
Query: 488 TMERSARAIMKTAMKYNL 505
M + A+++TA KY +
Sbjct: 194 KMREAFEAVLETAEKYGV 211
Score = 50.2 bits (121), Expect = 7e-07
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 8/45 (17%)
Query: 524 GGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFIVQ 568
GG GR ATGRGV + + + G G +Q
Sbjct: 1 GGSLGREEATGRGVAYATREALKKLG--------IGLAGARVAIQ 37
>gnl|CDD|178095 PLN02477, PLN02477, glutamate dehydrogenase.
Length = 410
Score = 104 bits (261), Expect = 4e-24
Identities = 46/107 (42%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 225 IEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACV 284
I++ + +D G G+R QH R P KGGIR+ +V DEV AL+ LMT+K A
Sbjct: 35 IKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA 94
Query: 285 DVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP 331
++P+GGAK GI +P++ SE+ELE++TR FT ++ IG VP
Sbjct: 95 NIPYGGAKGGIGCDPRDLSESELERLTRVFTQKI--HDLIGIHTDVP 139
Score = 69.0 bits (169), Expect = 2e-12
Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 382 ALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAA 441
AL ++ + G + GFPG P + ++++ EPCD+ +PAA+ VI K NA ++AK I EAA
Sbjct: 252 ALRKHVAEGGGLKGFPGGDPIDPDDILVEPCDVLIPAALGGVINKENAADVKAKFIVEAA 311
Query: 442 N 442
N
Sbjct: 312 N 312
Score = 43.2 bits (102), Expect = 2e-04
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 8/55 (14%)
Query: 514 ACVTGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFIVQ 568
A VTGKPI+ GG GR +ATGRGV E + E + + G+TF++Q
Sbjct: 166 AVVTGKPIDLGGSLGREAATGRGVVFATEALLAE--HGKSI------AGQTFVIQ 212
Score = 29.3 bits (66), Expect = 5.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 114 IEISFPVRRDSGDYEIITGYRAQHSTHRTPCKG 146
I++ + +D G G+R QH R P KG
Sbjct: 35 IKVECTIPKDDGTLASFVGFRVQHDNARGPMKG 67
>gnl|CDD|214847 smart00839, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine
dehydrogenase. Glutamate, leucine, phenylalanine and
valine dehydrogenases are structurally and functionally
related. They contain a Gly-rich region containing a
conserved Lys residue, which has been implicated in the
catalytic activity, in each case a reversible oxidative
deamination reaction.
Length = 102
Score = 63.4 bits (155), Expect = 2e-12
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 16/104 (15%)
Query: 412 CDIFVPAAVEKVITKNNAHKIQAKIIAEAAN----ESVQESLERR--------FGNVGGR 459
CDIF+P A++ VI + NA+++ AKIIAE AN + + LE R N GG
Sbjct: 3 CDIFIPCALQNVINEANANRLGAKIIAEGANMPLTDEADDILEDRGVLYAPDFAANAGG- 61
Query: 460 IPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMKY 503
V S + + + A + V + L M + I +TA KY
Sbjct: 62 --VIVS-ALEMLQNLARTAEEVFTDLSEIMRNALEEIFETAQKY 102
>gnl|CDD|215789 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine
dehydrogenase.
Length = 237
Score = 66.8 bits (164), Expect = 2e-12
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 379 KPLALEEYKLDNGTIVGFPG--AVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKI 436
LE + G +V + G A GE L CDI VP A + I + NA I+AK
Sbjct: 76 IEELLELKEEGGGRVVEYAGSGAEYISGEELWEIDCDILVPCATQNEINEENAKLIKAKA 135
Query: 437 IAEAAN 442
+ E AN
Sbjct: 136 VVEGAN 141
Score = 34.8 bits (81), Expect = 0.084
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 524 GGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFIVQ 568
GG GR ATG GV + +E + + S+ GKT VQ
Sbjct: 1 GGSLGRPEATGYGVVYFVEEALKKLGGDSLE-------GKTVAVQ 38
>gnl|CDD|184463 PRK14030, PRK14030, glutamate dehydrogenase; Provisional.
Length = 445
Score = 66.4 bits (162), Expect = 1e-11
Identities = 42/120 (35%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 222 DHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKC 281
D I P D G+ ++ GYR Q + P KGGIRF V+ +K L TFK
Sbjct: 54 DRIFTFRVPWVDDKGEVQVNLGYRVQFNNAIGPYKGGIRFHPSVNLSILKFLGFEQTFKN 113
Query: 282 ACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP----GARARE 337
A +P GG K G +P+ S+ E+ + + F LEL + IG VP G RE
Sbjct: 114 ALTTLPMGGGKGGSDFSPRGKSDAEIMRFCQAFMLELWR--HIGPDTDVPAGDIGVGGRE 171
Score = 29.4 bits (66), Expect = 6.3
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 396 FPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQA---KIIAEAAN 442
FPG+ + G+ + DI +P A + + +A K+ +AE +N
Sbjct: 296 FPGSTFFAGKKPWEQKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSN 345
>gnl|CDD|184464 PRK14031, PRK14031, glutamate dehydrogenase; Provisional.
Length = 444
Score = 62.3 bits (151), Expect = 3e-10
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 222 DHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKC 281
D + + D G+ + GYR QH+ P KGGIRF V+ +K L+ TFK
Sbjct: 54 DRVYQFRVTWVDDKGNVQTNMGYRVQHNNAIGPYKGGIRFHASVNLGILKFLAFEQTFKN 113
Query: 282 ACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP 331
+ +P GG K G +P+ S E+ + + F LEL + IG VP
Sbjct: 114 SLTTLPMGGGKGGSDFSPRGKSNAEVMRFCQAFMLELWR--HIGPETDVP 161
>gnl|CDD|185433 PTZ00079, PTZ00079, NADP-specific glutamate dehydrogenase;
Provisional.
Length = 454
Score = 56.7 bits (137), Expect = 2e-08
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 234 DSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAKA 293
D G+ + G+R Q+++ P KGG+RF V+ +K L FK + +P GG K
Sbjct: 75 DKGEQRVNRGFRVQYNSALGPYKGGLRFHPSVNLSILKFLGFEQIFKNSLTTLPMGGGKG 134
Query: 294 GIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP----GARARE 337
G +PK S+NE+ + + F EL + IG VP G RE
Sbjct: 135 GSDFDPKGKSDNEVMRFCQSFMTELYR--HIGPDTDVPAGDIGVGGRE 180
Score = 35.5 bits (82), Expect = 0.068
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 383 LEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNA---HKIQAKIIAE 439
L+EY + T PG P+E PCDI P A + I +A K K++AE
Sbjct: 298 LKEYAKHSSTAKYVPGKKPWE------VPCDIAFPCATQNEINLEDAKLLIKNGCKLVAE 351
Query: 440 AAN 442
AN
Sbjct: 352 GAN 354
>gnl|CDD|181834 PRK09414, PRK09414, glutamate dehydrogenase; Provisional.
Length = 445
Score = 55.1 bits (134), Expect = 5e-08
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 227 ISFPV--RRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACV 284
I F V D G ++ G+R Q ++ P KGG+RF V+ +K L FK A
Sbjct: 61 IIFRVPWVDDKGQVQVNRGFRVQFNSAIGPYKGGLRFHPSVNLSILKFLGFEQIFKNALT 120
Query: 285 DVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP----GARARE 337
+P GG K G +PK S+ E+ + + F EL + IG VP G RE
Sbjct: 121 GLPIGGGKGGSDFDPKGKSDAEIMRFCQSFMTELYR--HIGPDTDVPAGDIGVGGRE 175
>gnl|CDD|133450 cd05211, NAD_bind_Glu_Leu_Phe_Val, NAD(P) binding domain of
glutamate dehydrogenase, leucine dehydrogenase,
phenylalanine dehydrogenase, and valine dehydrogenase.
Amino acid dehydrogenase (DH) is a widely distributed
family of enzymes that catalyzes the oxidative
deamination of an amino acid to its keto acid and
ammonia with concomitant reduction of NAD(P)+. This
subfamily includes glutamate, leucine, phenylalanine,
and valine DHs. Glutamate DH is a multi-domain enzyme
that catalyzes the reaction from glutamate to
2-oxyoglutarate and ammonia in the presence of NAD or
NADP. It is present in all organisms. Enzymes involved
in ammonia assimilation are typically NADP+-dependent,
while those involved in glutamate catabolism are
generally NAD+-dependent. As in other NAD+-dependent
DHs, monomers in this family have 2 domains separated by
a deep cleft. Here the c-terminal domain contains a
modified NAD-binding Rossmann fold with 7 rather than
the usual 6 beta strands and one strand anti-parrallel
to the others. Amino acid DH-like NAD(P)-binding domains
are members of the Rossmann fold superfamily and include
glutamate, leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 217
Score = 50.6 bits (121), Expect = 4e-07
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 386 YKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAAN 442
Y + G + GE ++ DIF P A+ VI NA K++AK++AE AN
Sbjct: 72 YAVALGGSARVKVQDYFPGEAILGLDVDIFAPCALGNVIDLENAKKLKAKVVAEGAN 128
>gnl|CDD|133444 cd01075, NAD_bind_Leu_Phe_Val_DH, NAD(P) binding domain of leucine
dehydrogenase, phenylalanine dehydrogenase, and valine
dehydrogenase. Amino acid dehydrogenase (DH) is a
widely distributed family of enzymes that catalyzes the
oxidative deamination of an amino acid to its keto acid
and ammonia with concomitant reduction of NADP+. For
example, leucine DH catalyzes the reversible oxidative
deamination of L-leucine and several other straight or
branched chain amino acids to the corresponding
2-oxoacid derivative. Amino acid DH -like NAD(P)-binding
domains are members of the Rossmann fold superfamily and
include glutamate, leucine, and phenylalanine DHs,
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
DH-like proteins, malate oxidoreductases, and glutamyl
tRNA reductase. Amino acid DHs catalyze the deamination
of amino acids to keto acids with NAD(P)+ as a cofactor.
The NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha-beta-alpha configuration.
NAD binding involves numerous hydrogen and van der Waals
contacts.
Length = 200
Score = 38.7 bits (91), Expect = 0.003
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 397 PGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAAN 442
GA E + D+F P A+ VI + +++AK IA AAN
Sbjct: 71 FGATVVAPEEIYSVDADVFAPCALGGVINDDTIPQLKAKAIAGAAN 116
>gnl|CDD|133455 cd05313, NAD_bind_2_Glu_DH, NAD(P) binding domain of glutamate
dehydrogenase, subgroup 2. Amino acid dehydrogenase
(DH) is a widely distributed family of enzymes that
catalyzes the oxidative deamination of an amino acid to
its keto acid and ammonia with concomitant reduction of
NADP+. Glutamate DH is a multidomain enzyme that
catalyzes the reaction from glutamate to 2-oxyoglutarate
and ammonia in the presence of NAD or NADP. It is
present in all organisms. Enzymes involved in ammonia
asimilation are typically NADP+-dependent, while those
involved in glutamate catabolism are generally
NAD+-dependent. Amino acid DH-like NAD(P)-binding
domains are members of the Rossmann fold superfamily and
include glutamate, leucine, and phenylalanine DHs,
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
DH-like proteins, malate oxidoreductases, and glutamyl
tRNA reductase. Amino acid DHs catalyze the deamination
of amino acids to keto acids with NAD(P)+ as a cofactor.
The NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha -beta-alpha configuration.
NAD binding involves numerous hydrogen and van der Waals
contacts.
Length = 254
Score = 32.6 bits (75), Expect = 0.39
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 396 FPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQA---KIIAEAAN 442
+ A +EG+ PCDI P A + + +A + K +AE AN
Sbjct: 106 YGTAKYFEGKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGAN 155
Score = 29.1 bits (66), Expect = 6.3
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 517 TGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTT 557
TGK ++ GG R ATG G+ + +E +++ ++ G
Sbjct: 1 TGKGLSWGGSLIRPEATGYGLVYFVEE-MLKDRNETLKGKR 40
>gnl|CDD|217798 pfam03928, DUF336, Domain of unknown function (DUF336). This
family contains uncharacterized sequences, including
several GlcG proteins. The alignment contains many
conserved motifs that are suggestive of cofactor binding
and enzymatic activity.
Length = 132
Score = 30.7 bits (70), Expect = 0.94
Identities = 26/108 (24%), Positives = 34/108 (31%), Gaps = 24/108 (22%)
Query: 312 RRFTLELAKKGFIGEFKAVPGARAREGNVTF-------NLLFHYKFS-SGPVSMYLPQIW 363
TLE A K +G AV AR VT +LL + + P S
Sbjct: 1 PVLTLEDAWK--LGA-AAVAAARELGVRVTVAVVDAGGHLLAFARMDGAAPHSPE----I 53
Query: 364 VQEKGK---CPGLPTH------TRKPLALEEYKLDNGTIVGFPGAVPY 402
+ K G PT+ P D+ + F G VP
Sbjct: 54 ARRKAYTAASFGRPTYELGLALQPGPALFGGIVGDDPGLAAFGGGVPI 101
>gnl|CDD|235873 PRK06846, PRK06846, putative deaminase; Validated.
Length = 410
Score = 31.1 bits (71), Expect = 1.7
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 18/85 (21%)
Query: 443 ESVQESLERRFGNVGGRIPVTP--------SESFQKRISGASEKDIVH------SGLDYT 488
E++Q +LER I P SE + A + + +D
Sbjct: 147 ENLQAALERYKDGFTYEIVAFPQHGLLRSNSEPLMRE---AMKMGAHLVGGVDPASVDGA 203
Query: 489 MERSARAIMKTAMKYNLGHLDINAH 513
+E+S + + A+ +N G +DI+ H
Sbjct: 204 IEKSLDTMFQIAVDFNKG-VDIHLH 227
>gnl|CDD|218429 pfam05097, DUF688, Protein of unknown function (DUF688). This
family contains several uncharacterized proteins found
in Arabidopsis thaliana.
Length = 446
Score = 30.9 bits (69), Expect = 1.9
Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 4/122 (3%)
Query: 380 PLALEEYKLD-NGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIA 438
+ K + + V PG+VP++ E +P D P E +++ +
Sbjct: 40 KPSCPVTKSEIDSGPVREPGSVPFKWEQTPGKPKDESKPQIQEHPDFTPKLPPGRSRTVP 99
Query: 439 EAANESVQES---LERRFGNVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARA 495
+A + E + + + T S S +SG S + S + +R R
Sbjct: 100 VSAVLRKDDDDDDEEDDYLDALDTLSRTESFSVNCSVSGVSGLEGPGSSGTSSDDRETRD 159
Query: 496 IM 497
+M
Sbjct: 160 LM 161
>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional.
Length = 326
Score = 30.5 bits (70), Expect = 2.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 117 SFPVRRDSGDYEIITG 132
FPV ++G+YEI+ G
Sbjct: 282 GFPVTCENGEYEIVQG 297
Score = 30.5 bits (70), Expect = 2.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 228 SFPVRRDSGDYEIITG 243
FPV ++G+YEI+ G
Sbjct: 282 GFPVTCENGEYEIVQG 297
>gnl|CDD|216384 pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase. 6-Pyruvoyl
tetrahydrobiopterin synthase catalyzes the conversion of
dihydroneopterin triphosphate to 6-pyruvoyl
tetrahydropterin, the second of three enzymatic steps in
the synthesis of tetrahydrobiopterin from GTP. The
functional enzyme is a hexamer of identical subunits.
Length = 121
Score = 29.1 bits (66), Expect = 2.6
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 44 RNLHDIPEKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVE 85
+ L+D+PE PTAEN + + + R + V
Sbjct: 66 KLLNDVPEFAGVNPTAEN-----IARYIWDRLKPRLQGGGVR 102
Score = 29.1 bits (66), Expect = 2.6
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 155 RNLHDIPEKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVE 196
+ L+D+PE PTAEN + + + R + V
Sbjct: 66 KLLNDVPEFAGVNPTAEN-----IARYIWDRLKPRLQGGGVR 102
>gnl|CDD|224593 COG1679, COG1679, Predicted aconitase [General function prediction
only].
Length = 403
Score = 29.6 bits (67), Expect = 4.2
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 223 HIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGI---RFSDDVSRDEVKALSALM 277
I+E+ FP + D +Y + GY A GI R + S DE+KAL A M
Sbjct: 188 VIVEVEFPPKEDDSEYGAL-GYLAG-----EAAGDGIPYFRLALFPSEDELKALGAAM 239
>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase.
Length = 323
Score = 29.1 bits (66), Expect = 6.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 8/38 (21%)
Query: 284 VDVPFGGAKAGIKINP--------KNYSENELEKITRR 313
VDVP G AGI I P ++++ E+E +T+R
Sbjct: 186 VDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKR 223
>gnl|CDD|238618 cd01293, Bact_CD, Bacterial cytosine deaminase and related
metal-dependent hydrolases. Cytosine deaminases (CDs)
catalyze the deamination of cytosine, producing uracil
and ammonia. They play an important role in pyrimidine
salvage. CDs are present in prokaryotes and fungi, but
not mammalian cells. The bacterial enzymes, but not the
fungal enzymes, are related to the adenosine deaminases
(ADA). The bacterial enzymes are iron dependent and
hexameric.
Length = 398
Score = 29.1 bits (66), Expect = 6.8
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 480 IVHSGLDYTMERSARAIMKTAMKYNLG---HLD 509
I + +D E S + + A ++ L HLD
Sbjct: 178 IPPAEIDEDGEESLDTLFELAQEHGLDIDLHLD 210
>gnl|CDD|225455 COG2902, COG2902, NAD-specific glutamate dehydrogenase [Amino acid
transport and metabolism].
Length = 1592
Score = 29.3 bits (66), Expect = 7.2
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Query: 413 DIFVPAAVEKV-ITKNNAH--------KIQAKIIAEAANESVQESLERRFGNVGGRI 460
+V A+ E + A+ +++AK+I E AN V + F GGRI
Sbjct: 1085 GTYVKASGETNADVGDRANDAIRVNGEEVRAKVIGEGANLGVTQRGRIEFALAGGRI 1141
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium
uptake antiporter, P-type ATPase, alpha subunit. This
model describes the P-type ATPases responsible for the
exchange of either protons or sodium ions for potassium
ions across the plasma membranes of eukaryotes. Unlike
most other P-type ATPases, members of this subfamily
require a beta subunit for activity. This model
encompasses eukaryotes and consists of two functional
types, a Na/K antiporter found widely distributed in
eukaryotes and a H/K antiporter found only in
vertebrates. The Na+ or H+/K+ antiporter P-type ATPases
have been characterized as Type IIC based on a published
phylogenetic analysis. Sequences from Blastocladiella
emersonii (GP|6636502, GP|6636502 and PIR|T43025), C.
elegans (GP|2315419, GP|6671808 and PIR|T31763) and
Drosophila melanogaster (GP|7291424) score below trusted
cutoff, apparently due to long branch length (excessive
divergence from the last common ancestor) as evidenced
by a phylogenetic tree. Experimental evidence is needed
to determine whether these sequences represent ATPases
with conserved function. Aside from fragments, other
sequences between trusted and noise appear to be
bacterial ATPases of unclear lineage, but most likely
calcium pumps [Energy metabolism, ATP-proton motive
force interconversion].
Length = 997
Score = 29.0 bits (65), Expect = 8.4
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 22/95 (23%)
Query: 408 MYEPCDIFVPAAVEK-------VITKNNAHKIQAKIIAE------AANESVQESLERRFG 454
M +P VP AV K VI H I AK IA+ NE+V++ R
Sbjct: 565 MIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARL-- 622
Query: 455 NVGGRIPVT---PSESFQKRISGASEKDIVHSGLD 486
IPV+ P ++ + G+ KD+ LD
Sbjct: 623 ----NIPVSQVNPRDAKACVVHGSDLKDMTSEQLD 653
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.411
Gapped
Lambda K H
0.267 0.0780 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,265,662
Number of extensions: 2902409
Number of successful extensions: 2355
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2352
Number of HSP's successfully gapped: 44
Length of query: 568
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 466
Effective length of database: 6,413,494
Effective search space: 2988688204
Effective search space used: 2988688204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.6 bits)