RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8846
(568 letters)
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition,
oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB:
3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A
1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Length = 501
Score = 241 bits (618), Expect = 2e-73
Identities = 111/163 (68%), Positives = 133/163 (81%)
Query: 169 TAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEIS 228
++P FF MVE FF R I EDKLVED+K R T E K+ +VR IL ++PC+H++ +S
Sbjct: 3 REDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLS 62
Query: 229 FPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPF 288
FP+RRD G +E+I GYRAQHS HRTPCKGGIR+S DVS DEVKAL++LMT+KCA VDVPF
Sbjct: 63 FPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPF 122
Query: 289 GGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP 331
GGAKAG+KINPKNY++NELEKITRRFT+ELAKKGFIG VP
Sbjct: 123 GGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVP 165
Score = 120 bits (303), Expect = 3e-29
Identities = 81/186 (43%), Positives = 97/186 (52%), Gaps = 62/186 (33%)
Query: 382 ALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQA------- 434
LE++KL +GTI+GFP A YEG ++ CDI +PAA EK +TK+NA +++A
Sbjct: 290 ELEDFKLQHGTILGFPKAKIYEGS-ILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGA 348
Query: 435 ---------KIIAE---------AAN---------------------------------- 442
KI E N
Sbjct: 349 NGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYH 408
Query: 443 --ESVQESLERRFGNVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMKTA 500
SVQESLER+FG GG IP+ P+ FQ RISGASEKDIVHSGL YTMERSAR IM+TA
Sbjct: 409 LLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTA 468
Query: 501 MKYNLG 506
MKYNLG
Sbjct: 469 MKYNLG 474
Score = 114 bits (287), Expect = 3e-27
Identities = 52/89 (58%), Positives = 66/89 (74%)
Query: 58 TAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEIS 117
++P FF MVE FF R I EDKLVED+K R T E K+ +VR IL ++PC+H++ +S
Sbjct: 3 REDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLS 62
Query: 118 FPVRRDSGDYEIITGYRAQHSTHRTPCKG 146
FP+RRD G +E+I GYRAQHS HRTPCKG
Sbjct: 63 FPIRRDDGSWEVIEGYRAQHSQHRTPCKG 91
Score = 101 bits (253), Expect = 5e-23
Identities = 52/63 (82%), Positives = 59/63 (93%)
Query: 506 GHLDINAHACVTGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTF 565
GH DINAHACVTGKPI+QGGIHGRISATGRGVFHG+ENFI EA+YMS++G TPG+G KTF
Sbjct: 188 GHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTF 247
Query: 566 IVQ 568
+VQ
Sbjct: 248 VVQ 250
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant,
oxidoreductase; 2.90A {Thermotoga maritima} SCOP:
c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Length = 415
Score = 202 bits (516), Expect = 2e-59
Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 24/161 (14%)
Query: 173 PKFFDMVEFFFHRACQIA--EDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFP 230
++M F+RA + E L E ++ ++ + FP
Sbjct: 3 KSLYEMAVEQFNRAASLMDLESDLAEVLR--------------------RPKRVLIVEFP 42
Query: 231 VRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGG 290
VR D G E+ TGYR QH+ R P KGGIR+ DV+ DEVKAL+ MT+K A +++PFGG
Sbjct: 43 VRMDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVKALAFWMTWKTAVMNLPFGG 102
Query: 291 AKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP 331
K G++++PK S ELE+++RRF E+ IG + +P
Sbjct: 103 GKGGVRVDPKKLSRRELERLSRRFFREIQV--IIGPYNDIP 141
Score = 115 bits (290), Expect = 6e-28
Identities = 48/139 (34%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 382 ALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAA 441
L YK ++GT+V +P E L+ DI VPAA+E I NA +I+AK + E A
Sbjct: 256 ELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGA 315
Query: 442 N-----ESVQESLERR--------FGNVGGRIPVTPS--ESFQKRISGASEKDIVHSGLD 486
N E+ E L RR N GG VT S E Q S + D V + L+
Sbjct: 316 NGPTTPEAD-EILSRRGILVVPDILANAGG---VTVSYFEWVQDLQSFFWDLDQVRNALE 371
Query: 487 YTMERSARAIMKTAMKYNL 505
M+ + +MK KYN+
Sbjct: 372 KMMKGAFNDVMKVKEKYNV 390
Score = 74.4 bits (184), Expect = 2e-14
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 22/87 (25%)
Query: 62 PKFFDMVEFFFHRACQIA--EDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFP 119
++M F+RA + E L E ++ ++ + FP
Sbjct: 3 KSLYEMAVEQFNRAASLMDLESDLAEVLR--------------------RPKRVLIVEFP 42
Query: 120 VRRDSGDYEIITGYRAQHSTHRTPCKG 146
VR D G E+ TGYR QH+ R P KG
Sbjct: 43 VRMDDGHVEVFTGYRVQHNVARGPAKG 69
Score = 69.8 bits (172), Expect = 6e-13
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 511 NAHACVTGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFIVQ 568
VTGKP+ GG GR ATGRGV M ++G P T VQ
Sbjct: 166 TVLGIVTGKPVELGGSKGREEATGRGVKVCAGLA------MDVLGIDP--KKATVAVQ 215
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A
{Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A
1euz_A
Length = 419
Score = 201 bits (515), Expect = 3e-59
Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 24/161 (14%)
Query: 173 PKFFDMVEFFFHRACQIA--EDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFP 230
+++V RA Q ++ +E +K I+E++ P
Sbjct: 3 ADPYEIVIKQLERAAQYMEISEEALEFLK--------------------RPQRIVEVTIP 42
Query: 231 VRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGG 290
V D G ++ TG+R QH+ R P KGGIR+ + + VKAL+A MT+K A +D+P+GG
Sbjct: 43 VEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGG 102
Query: 291 AKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP 331
K GI ++PK S+ E E++ R + + I ++ +P
Sbjct: 103 GKGGIIVDPKKLSDREKERLARGYIRAIYD--VISPYEDIP 141
Score = 112 bits (282), Expect = 7e-27
Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 382 ALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAA 441
+ ++K ++G++ FPGA E L+ D+ PAA+E+VITK NA I+AKI+AE A
Sbjct: 259 EVLKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITKKNADNIKAKIVAEVA 318
Query: 442 N-----ESVQESLERR--------FGNVGGRIPVTPS--ESFQKRISGASEKDIVHSGLD 486
N E+ E L + N GG VT S E Q + V LD
Sbjct: 319 NGPVTPEAD-EILFEKGILQIPDFLCNAGG---VTVSYFEWVQNITGYYWTIEEVRERLD 374
Query: 487 YTMERSARAIMKTAMKYNL 505
M ++ + A + N+
Sbjct: 375 KKMTKAFYDVYNIAKEKNI 393
Score = 74.1 bits (183), Expect = 3e-14
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 505 LGHLDINAHACVTGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKT 564
+ A +TGKP++ GG GRI AT RG + + ++G GKT
Sbjct: 162 ISRRKTPAFGIITGKPLSIGGSLGRIEATARGASYTIREA------AKVLGWDT-LKGKT 214
Query: 565 FIVQ 568
+Q
Sbjct: 215 IAIQ 218
Score = 73.3 bits (181), Expect = 4e-14
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 22/87 (25%)
Query: 62 PKFFDMVEFFFHRACQIA--EDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFP 119
+++V RA Q ++ +E +K I+E++ P
Sbjct: 3 ADPYEIVIKQLERAAQYMEISEEALEFLK--------------------RPQRIVEVTIP 42
Query: 120 VRRDSGDYEIITGYRAQHSTHRTPCKG 146
V D G ++ TG+R QH+ R P KG
Sbjct: 43 VEMDDGSVKVFTGFRVQHNWARGPTKG 69
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A
{Thermus thermophilus HB27} PDB: 3aoe_A
Length = 440
Score = 199 bits (509), Expect = 4e-58
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 24/164 (14%)
Query: 170 AENPKFFDMVEFFFHRACQI--AEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEI 227
++ +++ R L E +K ++ +
Sbjct: 26 GKDGGPWEIFTEQVDRVVPYLGRLAPLAESLK--------------------RPKRVLIV 65
Query: 228 SFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVP 287
PVR D G GYR H+T R P KGG+R+ +V+ EV AL+ MT K A V +P
Sbjct: 66 DVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTLSEVMALAGWMTIKNAAVGLP 125
Query: 288 FGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP 331
+GG K GI+++P+ S ELE++TRR+T E+ +G + +P
Sbjct: 126 YGGGKGGIRVDPRKLSPGELERLTRRYTSEIGI--LLGPDRDIP 167
Score = 113 bits (284), Expect = 5e-27
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 17/138 (12%)
Query: 382 ALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAA 441
L + + G + G+P A P + P + VPAA+EK IT+ NA +I+A+I+AE A
Sbjct: 281 DLLRHVQEFGGVRGYPKAEPLPAADFWGLPVEFLVPAALEKQITEQNAWRIRARIVAEGA 340
Query: 442 N-----ESVQESLERR-------FGNVGGRIPVTPS--ESFQKRISGASEKDIVHSGLDY 487
N + LE+ N GG VT S E Q S ++ +++ L+
Sbjct: 341 NGPTTPAADDILLEKGVLVVPDVIANAGG---VTVSYFEWVQDFNSYFWTEEEINARLER 397
Query: 488 TMERSARAIMKTAMKYNL 505
+ + A+ + A + +
Sbjct: 398 VLRNAFEAVWQVAQEKKI 415
Score = 72.2 bits (178), Expect = 1e-13
Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 22/115 (19%)
Query: 34 ISATAVQSQQRNLHDIPEKLKDIPTAENPKFFDMVEFFFHRACQI--AEDKLVEDIKGRM 91
+ ++ + + ++ +++ R L E +K
Sbjct: 1 MGSSHHHHHHSQDPNSMKSEPLSYLGKDGGPWEIFTEQVDRVVPYLGRLAPLAESLK--- 57
Query: 92 TIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKG 146
++ + PVR D G GYR H+T R P KG
Sbjct: 58 -----------------RPKRVLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKG 95
Score = 68.7 bits (169), Expect = 1e-12
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 511 NAHACVTGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFIVQ 568
VTGKPI GG GR ATGRGVF A +G G +Q
Sbjct: 192 TVPGVVTGKPIALGGSLGRRDATGRGVFI----TAAAA--AEKIGLQV--EGARVAIQ 241
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET:
NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7
c.58.1.1
Length = 421
Score = 199 bits (508), Expect = 4e-58
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 24/163 (14%)
Query: 171 ENPKFFDMVEFFFHRACQIA--EDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEIS 228
E F + V + + ++ + + + ++ ++
Sbjct: 2 ERTGFLEYVLNYVKKGVELGGFPEDFYKILS--------------------RPRRVLIVN 41
Query: 229 FPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPF 288
PVR D G +E+ GYR QH P KGG+RF +V+ + AL+ LMT K + +P+
Sbjct: 42 IPVRLDGGGFEVFEGYRVQHCDVLGPYKGGVRFHPEVTLADDVALAILMTLKNSLAGLPY 101
Query: 289 GGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP 331
GGAK ++++PK S+ ELE+++R + +A IG+ +P
Sbjct: 102 GGAKGAVRVDPKKLSQRELEELSRGYARAIAP--LIGDVVDIP 142
Score = 90.6 bits (226), Expect = 1e-19
Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 23/143 (16%)
Query: 382 ALEEYKLDNGTIV-----GFPGAVPYEG-ENLMYEPCDIFVPAAVEKVITKNNAHKIQAK 435
+++ K G + A + + + DIFVPAA+E VI +NA ++A+
Sbjct: 256 LIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAIENVIRGDNAGLVKAR 315
Query: 436 IIAEAAN-----ESVQESLERR-------FGNVGGRIPVTPS--ESFQKRISGASEKDIV 481
++ E AN E+ + ER N GG V S E + +++
Sbjct: 316 LVVEGANGPTTPEAERILYERGVVVVPDILANAGG---VIMSYLEWVENLQWYIWDEEET 372
Query: 482 HSGLDYTMERSARAIMKTAMKYN 504
L+ M + + K +
Sbjct: 373 RKRLENIMVNNVERVYKRWQREK 395
Score = 74.5 bits (184), Expect = 2e-14
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 22/89 (24%)
Query: 60 ENPKFFDMVEFFFHRACQIA--EDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEIS 117
E F + V + + ++ + + + ++ ++
Sbjct: 2 ERTGFLEYVLNYVKKGVELGGFPEDFYKILS--------------------RPRRVLIVN 41
Query: 118 FPVRRDSGDYEIITGYRAQHSTHRTPCKG 146
PVR D G +E+ GYR QH P KG
Sbjct: 42 IPVRLDGGGFEVFEGYRVQHCDVLGPYKG 70
Score = 66.4 bits (163), Expect = 7e-12
Identities = 16/58 (27%), Positives = 18/58 (31%), Gaps = 8/58 (13%)
Query: 511 NAHACVTGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFIVQ 568
N T KP G R ATG GV + G GKT +Q
Sbjct: 167 NVPGVFTSKPPELWGNPVREYATGFGVAVATREMAKKLW--------GGIEGKTVAIQ 216
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase;
oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Length = 421
Score = 197 bits (504), Expect = 1e-57
Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 24/164 (14%)
Query: 170 AENPKFFDMVEFFFHRACQIA--EDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEI 227
+ + AC+ + + E +K +IEI
Sbjct: 2 TDTLNPLVAAQEKVRIACEKLGCDPAVYELLK--------------------EPQRVIEI 41
Query: 228 SFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVP 287
S PV+ D G ++ G+R+ HS+ P KGG+RF +V+ DEVKALS MTFK + +P
Sbjct: 42 SIPVKMDDGTVKVFKGWRSAHSSAVGPSKGGVRFHPNVNMDEVKALSLWMTFKGGALGLP 101
Query: 288 FGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP 331
+GG K GI ++P SE ELE+++R + L K ++G+ +P
Sbjct: 102 YGGGKGGICVDPAELSERELEQLSRGWVRGLYK--YLGDRIDIP 143
Score = 110 bits (278), Expect = 2e-26
Identities = 44/139 (31%), Positives = 60/139 (43%), Gaps = 19/139 (13%)
Query: 382 ALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAA 441
L YK N T++GFPGA E + DI VPAA+E VIT A I AK++ EAA
Sbjct: 263 ELLAYKEANKTLIGFPGAERITDEEFWTKEYDIIVPAALENVITGERAKTINAKLVCEAA 322
Query: 442 N-----ESVQESLERR--------FGNVGGRIPVTPS--ESFQKRISGASEKDIVHSGLD 486
N E + L R N GG V S E Q + + V +
Sbjct: 323 NGPTTPEGD-KVLTERGINLTPDILTNSGG---VLVSYYEWVQNQYGYYWTEAEVEEKQE 378
Query: 487 YTMERSARAIMKTAMKYNL 505
M ++ + + A +YN+
Sbjct: 379 ADMMKAIKGVFAVADEYNV 397
Score = 69.9 bits (172), Expect = 6e-13
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 22/90 (24%)
Query: 59 AENPKFFDMVEFFFHRACQIA--EDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEI 116
+ + AC+ + + E +K +IEI
Sbjct: 2 TDTLNPLVAAQEKVRIACEKLGCDPAVYELLK--------------------EPQRVIEI 41
Query: 117 SFPVRRDSGDYEIITGYRAQHSTHRTPCKG 146
S PV+ D G ++ G+R+ HS+ P KG
Sbjct: 42 SIPVKMDDGTVKVFKGWRSAHSSAVGPSKG 71
Score = 66.8 bits (164), Expect = 5e-12
Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 503 YNLGHLDINAHACVTGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGG 562
Y + + TGKP+ GG GR ATG GV + E+ G
Sbjct: 161 YVKLNGERMDIGTFTGKPVAFGGSEGRNEATGFGVAV----VVRES--AKRFGIKM--ED 212
Query: 563 KTFIVQ 568
VQ
Sbjct: 213 AKIAVQ 218
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A
{Thermus thermophilus}
Length = 419
Score = 195 bits (498), Expect = 8e-57
Identities = 51/164 (31%), Positives = 72/164 (43%), Gaps = 24/164 (14%)
Query: 170 AENPKFFDMVEFFFHRACQIAE--DKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEI 227
E+P +D + RA ++A +E + ++ +
Sbjct: 9 PEDPGLWDTYLEWLERALKVAGVHPTTLEYLA--------------------HPKRLVTL 48
Query: 228 SFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVP 287
S PV D G I GYR H R P KGG+R V+ + L+A MT K A D+P
Sbjct: 49 SLPVVMDDGKVRIFQGYRVVHDIARGPAKGGVRLDPGVTLGQTAGLAAWMTLKAAVYDLP 108
Query: 288 FGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP 331
FGGA GI ++PK S ELE++ RR+T EL IG +
Sbjct: 109 FGGAAGGIAVDPKGLSPQELERLVRRYTAELVG--LIGPDSDIL 150
Score = 92.2 bits (230), Expect = 3e-20
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 23/139 (16%)
Query: 382 ALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAA 441
+ G++ A E + ++ V AA E + + A ++QA+ + E A
Sbjct: 264 EVLSAYEATGSLPRLDLA----PEEVFGLEAEVLVLAAREGALDGDRARQVQAQAVVEVA 319
Query: 442 N-----ESVQESLERR--------FGNVGGRIPVTPS--ESFQKRISGASEKDIVHSGLD 486
N E+ L + GG + S E Q + V +
Sbjct: 320 NFGLNPEAE-AYLLGKGALVVPDLLSGGGG---LLASYLEWVQDLNMFFWSPEEVRERFE 375
Query: 487 YTMERSARAIMKTAMKYNL 505
+ R A+ + A + L
Sbjct: 376 TRVARVVDAVCRRAERGGL 394
Score = 72.1 bits (178), Expect = 1e-13
Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 22/90 (24%)
Query: 59 AENPKFFDMVEFFFHRACQIAE--DKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEI 116
E+P +D + RA ++A +E + ++ +
Sbjct: 9 PEDPGLWDTYLEWLERALKVAGVHPTTLEYLA--------------------HPKRLVTL 48
Query: 117 SFPVRRDSGDYEIITGYRAQHSTHRTPCKG 146
S PV D G I GYR H R P KG
Sbjct: 49 SLPVVMDDGKVRIFQGYRVVHDIARGPAKG 78
Score = 64.4 bits (158), Expect = 4e-11
Identities = 18/58 (31%), Positives = 19/58 (32%), Gaps = 8/58 (13%)
Query: 511 NAHACVTGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFIVQ 568
VTGKP GG GR A G G LE G G +VQ
Sbjct: 175 TVPGVVTGKPHALGGSEGRDDAAGLGALLVLEAL------AKRRGLDL--RGARVVVQ 224
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 195 bits (497), Expect = 1e-56
Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 24/163 (14%)
Query: 171 ENPKFFDMVEFFFHRACQIA--EDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEIS 228
E F + A + + E +K ++ +
Sbjct: 13 EALNLFLSTQTIIKEALRKLGYPGDMYELMK--------------------EPQRMLTVR 52
Query: 229 FPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPF 288
PV+ D+G ++ TGYR+QH+ P KGG+RF +V+ ++VKALS MT KC ++P+
Sbjct: 53 IPVKMDNGSVKVFTGYRSQHNDAVGPTKGGVRFHPEVNEEKVKALSIWMTLKCGIANLPY 112
Query: 289 GGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP 331
GG K GI +P+ S ELE+++R + +++ +G K +P
Sbjct: 113 GGGKGGIICDPRTMSFGELERLSRGYVRAISQ--IVGPTKDIP 153
Score = 98.4 bits (246), Expect = 3e-22
Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 18/138 (13%)
Query: 382 ALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAA 441
L + + G + E L+ + CDI VPAA+ IT NAH IQA I+ E A
Sbjct: 267 YLLDKRDSFGMVTNLFTD-VITNEELLEKDCDILVPAAISNQITAKNAHNIQASIVVERA 325
Query: 442 N-----ESVQESLERR-------FGNVGGRIPVTPS--ESFQKRISGASEKDIVHSGLDY 487
N ++ + ER + GG VT S E Q ++ V L
Sbjct: 326 NGPTTIDATKILNERGVLLVPDILASAGG---VTVSYFEWVQNNQGYYWSEEEVAEKLRS 382
Query: 488 TMERSARAIMKTAMKYNL 505
M S I +TA + +
Sbjct: 383 VMVSSFETIYQTAATHKV 400
Score = 69.8 bits (172), Expect = 7e-13
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 22/89 (24%)
Query: 60 ENPKFFDMVEFFFHRACQIA--EDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEIS 117
E F + A + + E +K ++ +
Sbjct: 13 EALNLFLSTQTIIKEALRKLGYPGDMYELMK--------------------EPQRMLTVR 52
Query: 118 FPVRRDSGDYEIITGYRAQHSTHRTPCKG 146
PV+ D+G ++ TGYR+QH+ P KG
Sbjct: 53 IPVKMDNGSVKVFTGYRSQHNDAVGPTKG 81
Score = 67.5 bits (166), Expect = 3e-12
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 509 DINAHACVTGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFIVQ 568
+ ++ +TGKP+ GG GR +AT +GV +E + + I+Q
Sbjct: 176 EFDSPGFITGKPLVLGGSQGRETATAQGVTICIEEAVKKKGI--------KLQNARIIIQ 227
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 124 bits (315), Expect = 1e-31
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
Query: 228 SFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRF----SDDVSRDEVKALSALMTFKCAC 283
+D + A H T P GG R +++ + ++ L+ MT+K A
Sbjct: 14 QLVFCQDEA--SGLKAVIAIHDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYKNAA 71
Query: 284 VDVPFGGAKAGIKINPKNYSENELEKITRRFTLEL 318
+ GG K I +P ++ + RF L
Sbjct: 72 AGLNLGGGKTVIIGDPFADKNEDMFRALGRFIQGL 106
Score = 77.6 bits (192), Expect = 1e-15
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 391 GTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAAN 442
V GA + CDIF P A+ V+ +++AK+IA +A+
Sbjct: 210 SAAVAEEGADAVAPNAIYGVTCDIFAPCALGAVLNDFTIPQLKAKVIAGSAD 261
Score = 44.4 bits (106), Expect = 6e-05
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 6/53 (11%)
Query: 516 VTGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFIVQ 568
VTG G T GV+ G++ EA + G VQ
Sbjct: 133 VTGISPAFGSSGNPSPVTAYGVYRGMKAAAKEAFGSDSL------EGLAVSVQ 179
Score = 33.6 bits (78), Expect = 0.15
Identities = 6/30 (20%), Positives = 8/30 (26%), Gaps = 2/30 (6%)
Query: 117 SFPVRRDSGDYEIITGYRAQHSTHRTPCKG 146
+D + A H T P G
Sbjct: 14 QLVFCQDEA--SGLKAVIAIHDTTLGPALG 41
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis,
oligomer organization, oxidoreductase; 2.7A {Plasmodium
falciparum}
Length = 470
Score = 124 bits (314), Expect = 8e-31
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 222 DHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKC 281
+ I+ D+G +R Q+++ P KGG+RF V+ VK L FK
Sbjct: 78 ERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFKN 137
Query: 282 ACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP----GARARE 337
+ + GG K G +PK S+NE+ K + F EL + IG VP G RE
Sbjct: 138 SLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYR--HIGPCTDVPAGDIGVGGRE 195
Score = 51.5 bits (124), Expect = 4e-07
Identities = 27/133 (20%), Positives = 42/133 (31%), Gaps = 24/133 (18%)
Query: 396 FPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQA---KIIAEAAN-----ESVQE 447
A + E PC + P A + + + A +Q ++ E AN +++
Sbjct: 320 SSTAKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPSTVDAINL 379
Query: 448 SLERR--FG-----NVGGRIPVTPS--ESFQ--KRISGASEKDIVHSGLDYTMERSARAI 496
+ N GG V S E Q + E V L M A
Sbjct: 380 FKSNNIIYCPSKAANAGG---VAISGLEMSQNFQFSHWTRET--VDEKLKEIMRNIFIAC 434
Query: 497 MKTAMKYNLGHLD 509
+ A+KY D
Sbjct: 435 SENALKYTKNKYD 447
Score = 40.7 bits (96), Expect = 0.001
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 111 DHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKG 146
+ I+ D+G +R Q+++ P KG
Sbjct: 78 ERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKG 113
Score = 39.6 bits (93), Expect = 0.002
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 511 NAHACV-TGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTT 557
N+ TGK + GG + R+ ATG G+ + + ++++ + + T
Sbjct: 208 NSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLE-VLKSLNIPVEKQT 254
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A
{Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB:
1hrd_A 1k89_A 1aup_A 2yfh_A
Length = 449
Score = 123 bits (312), Expect = 9e-31
Identities = 41/118 (34%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 224 IIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCAC 283
+IE P D+G + TGYR Q + P KGG+RF+ V+ +K L FK +
Sbjct: 57 VIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSL 116
Query: 284 VDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP----GARARE 337
+P GGAK G +P S+ E+ + + F EL + IG VP G ARE
Sbjct: 117 TTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYR--HIGPDIDVPAGDLGVGARE 172
Score = 48.7 bits (117), Expect = 4e-06
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 394 VGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQA---KIIAEAAN 442
G + GE + DI +P A + + A KI A K E AN
Sbjct: 296 ADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVAN 347
Score = 40.3 bits (95), Expect = 0.001
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 113 IIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKG 146
+IE P D+G + TGYR Q + P KG
Sbjct: 57 VIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKG 90
Score = 36.8 bits (86), Expect = 0.018
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 516 VTGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTT 557
+TGK + GG R ATG G + +E +M+ ++VG T
Sbjct: 192 LTGKARSFGGSLVRPEATGYGSVYYVEA-VMKHENDTLVGKT 232
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast;
3.10A {Plasmodium falciparum}
Length = 456
Score = 117 bits (296), Expect = 1e-28
Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 18/191 (9%)
Query: 151 QSQQRNLHDIPEKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKK 210
+ +++ + E+L++ ++N E F +A + L K
Sbjct: 6 YTSTKSVDNQIEELREKVVSKNKN-----EPEFLQAFEEVLSCLKPVF-------KKDNV 53
Query: 211 VRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEV 270
G+L + + +I+ P D G++++ G+R Q+++ P KGG+RF V+ +
Sbjct: 54 YIGVLENIAEPERVIQFRVPWINDKGEHKMNRGFRVQYNSVLGPYKGGLRFHPAVNLSVI 113
Query: 271 KALSALMTFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAV 330
K L FK + +P GG K G +PK SENE+ K + F L + +IG V
Sbjct: 114 KFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGKSENEILKFCQSFMTNLFR--YIGPNTDV 171
Query: 331 P----GARARE 337
P G RE
Sbjct: 172 PAGDIGVGGRE 182
Score = 49.9 bits (120), Expect = 1e-06
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 396 FPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKI---QAKIIAEAAN 442
A +E + PCDI P A + I +N+A + K+I E AN
Sbjct: 307 SKTAKYFENQKPWNIPCDIAFPCATQNEINENDADLFIQNKCKMIVEGAN 356
Score = 39.1 bits (92), Expect = 0.003
Identities = 20/107 (18%), Positives = 45/107 (42%), Gaps = 12/107 (11%)
Query: 40 QSQQRNLHDIPEKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKK 99
+ +++ + E+L++ ++N E F +A + L K
Sbjct: 6 YTSTKSVDNQIEELREKVVSKNKN-----EPEFLQAFEEVLSCLKPVF-------KKDNV 53
Query: 100 VRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKG 146
G+L + + +I+ P D G++++ G+R Q+++ P KG
Sbjct: 54 YIGVLENIAEPERVIQFRVPWINDKGEHKMNRGFRVQYNSVLGPYKG 100
Score = 37.6 bits (88), Expect = 0.011
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 511 NAHACV-TGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTT 557
N+ V TGK I GG + R ATG GV + EN +++ ++
Sbjct: 195 NSFEGVLTGKNIKWGGSNIRAEATGYGVVYFAEN-VLKDLNDNLENKK 241
>2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A
{Escherichia coli} PDB: 3sbo_A 2yfg_E
Length = 447
Score = 116 bits (294), Expect = 3e-28
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 224 IIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCAC 283
+I+ D ++ +R Q S+ P KGG+RF V+ +K L TFK A
Sbjct: 60 VIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNAL 119
Query: 284 VDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP----GARARE 337
+P GG K G +PK SE E+ + + EL + +G VP G RE
Sbjct: 120 TTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYR--HLGADTDVPAGDIGVGGRE 175
Score = 43.8 bits (104), Expect = 1e-04
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 397 PGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQA---KIIAEAAN 442
G V EG+ P DI +P A + + + AH++ A K +AE AN
Sbjct: 300 FGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGAN 348
Score = 40.0 bits (94), Expect = 0.002
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 511 NAHACV-TGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTT 557
N ACV TGK ++ GG R ATG G+ + E ++ + M G
Sbjct: 188 NNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAM-LKRHGMGFEGMR 234
Score = 38.0 bits (89), Expect = 0.007
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 113 IIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKG 146
+I+ D ++ +R Q S+ P KG
Sbjct: 60 VIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKG 93
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 109 bits (275), Expect = 2e-26
Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 18/110 (16%)
Query: 234 DSGDYEII-------TGYR---AQHSTHRTPCKGGIRFSDDVSRDE----VKALSALMTF 279
+ D E+ TG ST P GG R + + + L+ MT
Sbjct: 6 LNWDGEMTVTRFDAMTGAHFVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTL 65
Query: 280 KCACVDVPFGGAKAGIKINPKNY--SENELEKITRRFTLELAKKGFIGEF 327
K A ++P GG K+ I + + + +I R + K G +
Sbjct: 66 KMAVSNLPMGGGKSVIALPAPRHSIDPSTWARILRIHAENIDK--LSGNY 113
Score = 71.8 bits (177), Expect = 1e-13
Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 22/123 (17%)
Query: 397 PGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAAN-----ESVQESLER 451
G E+++ PCD+F P A+ VIT A + ++A AAN E+ + L
Sbjct: 217 LGHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHA 276
Query: 452 RFG---------NVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMK 502
R G N GG I + R + +VH + + + + +
Sbjct: 277 R-GILYAPDFVANAGGAIHL------VGREVLGWSESVVHERAV-AIGDTLNQVFEISDN 328
Query: 503 YNL 505
+
Sbjct: 329 DGV 331
Score = 46.4 bits (111), Expect = 2e-05
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 515 CVTGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFIVQ 568
V G+ + +GG T GVF ++ + S+ G T +VQ
Sbjct: 135 FVFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSL-------DGLTVLVQ 181
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 5e-07
Identities = 61/498 (12%), Positives = 133/498 (26%), Gaps = 185/498 (37%)
Query: 55 DIPTAE-NPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHI 113
D T E ++ D++ F ED V++ + ++D K + L + DHI
Sbjct: 8 DFETGEHQYQYKDILSVF--------EDAFVDNFDCK-DVQDMPKSI----LSKEEIDHI 54
Query: 114 IEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGATAVQ-----SQQRNLHDIPEKLKDIP 168
I SG + + K VQ + N + +K
Sbjct: 55 IMSK---DAVSGTLRLFWTLLS---------KQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 169 TAENPKFFDMVEFFFHRACQIAEDKLVED----IKGRMTIEDKKKKVRGILL-------- 216
+ + R D+L D K ++ K+R LL
Sbjct: 103 RQPSM---MTRMYIEQR------DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 217 ---GMQPC-----------DHIIEISFP-------VRRDSGDYEIIT-----------GY 244
G+ + ++ ++ + ++ +
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 245 RAQHSTHRTP------CKGGIR--FS-----------DDV-SRDEVKALS----ALMTFK 280
++ + +R +V + A + L+T +
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 281 CACV-DVPFGGAKAGIKINPKNYSENELEKITRRFTLE-----LAKKGFIG-EFKAVP-- 331
V D ++ + L+ + T + L K ++ + +P
Sbjct: 274 FKQVTDF----------LSAATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLPRE 321
Query: 332 ------------GARAREGNVTFNLLFHYKFSSGPVSMYLPQIWVQEKGKCPGLPTHTRK 379
R+G T++ H +K L T +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNC---------------DK-----L-TTIIE 360
Query: 380 PLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIF-----VPAAVEKVITKNNAHKIQA 434
+L L+ P E M++ +F +P + +I +
Sbjct: 361 -SSLNV--LE-----------PAEYRK-MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 435 KIIAEAANESVQESLERR 452
++ + S+ +E++
Sbjct: 406 VVVNKLHKYSL---VEKQ 420
Score = 42.9 bits (100), Expect = 3e-04
Identities = 71/516 (13%), Positives = 152/516 (29%), Gaps = 155/516 (30%)
Query: 16 AMLKLR----VLCQG-LGT-KLCPISATAVQSQQRNLHDIPE------KLKDIPTAENPK 63
A+L+LR VL G LG+ K ++ S + + + LK+ + E
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYK--VQCKMDFKIFWLNLKNCNSPET-- 197
Query: 64 FFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQ--PC----DH----- 112
+M++ ++ + ++ I + ++R +L C +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 113 IIEISFPVR-------RDSGDYEIITGYRAQHSTHRTPCKGATAVQSQQ---RNLH---- 158
+F + R + ++ H + T + + + L
Sbjct: 258 AWN-AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 159 DIPEKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGM 218
D+P ++ NP+ + IAE + D G T ++ K +
Sbjct: 317 DLPREVLTT----NPRRLSI----------IAE--SIRD--GLATWDNWKH------VNC 352
Query: 219 QPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSAL-- 276
IIE S V + +Y + + F LS +
Sbjct: 353 DKLTTIIESSLNV-LEPAEYR--KMFDRL----------SV-FPPSAHIPT-ILLSLIWF 397
Query: 277 -------MTFKCACVDVPFGGAKAGIKINPKN--YSENEL---EKITRRFTLELAKKGFI 324
M + ++ PK S + K+ L + +
Sbjct: 398 DVIKSDVMVVVNKLHK------YSLVEKQPKESTISIPSIYLELKVKLENEYALHRS-IV 450
Query: 325 GEFKAVPGARAREGN-----VTFNLLFHY------------KFSSGPVSMYLPQIWVQEK 367
+ + + + + + + + ++L ++++K
Sbjct: 451 DHYNI---PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR-MVFLDFRFLEQK 506
Query: 368 GKCPGLPTHTRKPLA-----LEEYK---LDN--------GTIVGFPGAVPYEGENLMYEP 411
+ + + L+ YK DN I+ F +P ENL+
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF---LPKIEENLICSK 563
Query: 412 -CDIFVPAAVEKVITKNNAHKIQAKIIAEAANESVQ 446
D+ A ++ ++ A I E A++ VQ
Sbjct: 564 YTDLLRIA----LMAEDEA-------IFEEAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 2e-06
Identities = 94/574 (16%), Positives = 145/574 (25%), Gaps = 223/574 (38%)
Query: 114 IEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGATAVQSQQRNLHDIPEKLKDIPTAENP 173
+E V ++ A Q Q++ +PE + + P
Sbjct: 16 LEHVLLV---------------PTASF------FIASQLQEQFNKILPEPTEGFAADDEP 54
Query: 174 --------KFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCD-HI 224
KF V + D+++ E L G D H
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE--FE------NCYLEGN---DIHA 103
Query: 225 IEISFPVRRDSGD---YEIITGY-RAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFK 280
+ D+ E+I Y A+ R K K+ SAL F+
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK--------------KSNSAL--FR 147
Query: 281 CACVD-----VPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPGAR- 334
FGG G N +Y E EL + + + +G+
Sbjct: 148 AVGEGNAQLVAIFGGQ--G---NTDDYFE-ELRDLYQTY------HVLVGDLIKFSAETL 195
Query: 335 ---AREGNVTFNLLFH------------------YKFSSGPVSMYLPQIWV--------- 364
R + Y S P+S P I V
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY-LLSIPISC--PLIGVIQLAHYVVT 252
Query: 365 -QEKGKCP--------GLPTHTRK-PLAL--------EEYKLDNGT-------IVGF--- 396
+ G P G H++ A+ E + + +G
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF-FVSVRKAITVLFFIGVRCY 311
Query: 397 ---------PGAVPYEGENLMYEPCDIFV-----PAAVEKVITKNNAHKIQAKIIAEAAN 442
P + EN P + V+ + K N+H A
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL--------PAG 363
Query: 443 ESVQESL---ERRFGNVGGRIPVT-------------PSESFQKRISGASEKDIV----- 481
+ V+ SL + V G P + PS Q RI + K
Sbjct: 364 KQVEISLVNGAKNL-VVSGP-PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Query: 482 ------HSGLDYTMERSARAIMKTAMKYNL----GHLDINAHACVTGKPI--NQGGIHGR 529
HS L + ++ I K +K N+ + I + G + G I R
Sbjct: 422 PVASPFHSHL---LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Query: 530 I-----------------SAT-----GRGVFHGL 541
I AT G G GL
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDFGPGGASGL 512
Score = 37.7 bits (87), Expect = 0.011
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 20/83 (24%)
Query: 484 GLD-YTMERSARAIMKTAMKYNLGHLDINAHACVTGKP----INQGGIHGRISATGRGVF 538
G+D Y ++A+ + A + + V P I+ GG G+
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK--------- 1682
Query: 539 HGLENFIMEANYMSMVGTTPGWG 561
I E NY +M+ T G
Sbjct: 1683 -----RIRE-NYSAMIFETIVDG 1699
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein,
chromosome segregation, DNA-binding, helix-turn-helix;
2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Length = 230
Score = 31.0 bits (71), Expect = 0.70
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 30/73 (41%)
Query: 99 KVRGILLGMQPCDHIIEISFPVRRDSGDYEIITG---YRAQHSTHRTPCKGATAVQSQQR 155
+ +G+ +QP ++ VR YE++ G YRA +
Sbjct: 55 REKGL---LQP---LL-----VRPQGDGYELVAGERRYRA----------------ALMA 87
Query: 156 NLHDIPEKLKDIP 168
L ++P +KD+
Sbjct: 88 GLQEVPAVVKDLT 100
Score = 28.3 bits (64), Expect = 5.1
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 14/40 (35%)
Query: 210 KVRGILLGMQPCDHIIEISFPVRRDSGDYEIITG---YRA 246
+ +G+ +QP ++ VR YE++ G YRA
Sbjct: 55 REKGL---LQP---LL-----VRPQGDGYELVAGERRYRA 83
>3d7j_A Uncharacterized protein SCO6650; T-fold, unknown function; 1.45A
{Streptomyces coelicolor}
Length = 152
Score = 29.0 bits (65), Expect = 2.2
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 9/58 (15%)
Query: 44 RNLHDIPEKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVR 101
RNL + P+ + E + + R +++ + G V
Sbjct: 89 RNLDNEPDFAGVNTSTEF-----LAKVIADR----LAERVHKGALGEGARGLAGLTVT 137
Score = 29.0 bits (65), Expect = 2.2
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 9/58 (15%)
Query: 155 RNLHDIPEKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVR 212
RNL + P+ + E + + R +++ + G V
Sbjct: 89 RNLDNEPDFAGVNTSTEF-----LAKVIADR----LAERVHKGALGEGARGLAGLTVT 137
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A
{Debaryomyces hansenii}
Length = 348
Score = 29.1 bits (65), Expect = 3.9
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 21 RVLCQGLGTKLCPISATAVQSQQRNLHDIPEKLKDIPTAENP 62
++L C + + Q++ L + E +D + P
Sbjct: 269 QLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYEDYHLVKMP 310
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase;
HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1
PDB: 1i7q_B 1i7s_B*
Length = 192
Score = 28.2 bits (64), Expect = 5.7
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 526 IHGRISA---TGRGVFHGLENFIMEANYMSMVGTT 557
+HG+ ++ G+ +F GL N + A Y S+VG+
Sbjct: 104 LHGKATSIEHDGQAMFAGLANPLPVARYHSLVGSN 138
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural
genomics, protein structure initiative, hypothetical
protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa}
SCOP: c.1.17.2 d.41.2.2
Length = 408
Score = 28.5 bits (64), Expect = 7.6
Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 231 VRRDSGD-YEIITGYRAQ-HSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPF 288
+R DSGD A P + FSD + D +AL + F
Sbjct: 286 LRHDSGDPLLWAEKTIAHYLKLGIDPLTKTLVFSDGL--DLPRALKIYRALQGRINVS-F 342
Query: 289 G 289
G
Sbjct: 343 G 343
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 27.9 bits (62), Expect = 8.1
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 32 CPISATAVQSQQRNLHDIPEKLKDIPTAENP 62
C + QQ L I EK D AE P
Sbjct: 268 CEFCNARRKLQQERLKQIREKFSDKVVAEVP 298
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur,
oxidoreductase, purine metabolism, molybdenum cofactor,
hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter
capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Length = 777
Score = 28.4 bits (64), Expect = 8.3
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 494 RAIMKTAMKYNLGHLDINAHACVTGKPIN 522
RA++ Y + L I +H T N
Sbjct: 310 RAMLHADGSYFVPALRIESHRLRTNTQSN 338
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein,
targeting factor, ATP-bindi TRC40, ARSA,
nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus
jannaschii} PDB: 3ug6_A*
Length = 349
Score = 28.0 bits (62), Expect = 9.5
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 32 CPISATAVQSQQRNLHDIPEKLKDIPTAENP 62
C + Q + L I EK D A P
Sbjct: 283 CDFCRARRELQLKRLEMIKEKFGDKVIAYVP 313
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.411
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,884,797
Number of extensions: 557876
Number of successful extensions: 1225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1208
Number of HSP's successfully gapped: 95
Length of query: 568
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 469
Effective length of database: 3,937,614
Effective search space: 1846740966
Effective search space used: 1846740966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.0 bits)