RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8846
(568 letters)
>d1hwxa2 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos
taurus) [TaxId: 9913]}
Length = 208
Score = 188 bits (479), Expect = 3e-57
Identities = 109/164 (66%), Positives = 132/164 (80%)
Query: 169 TAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEIS 228
++P FF MVE FF R I EDKLVED+K R T E K+ +VRGIL ++PC+H++ +S
Sbjct: 3 REDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRQTQEQKRNRVRGILRIIKPCNHVLSLS 62
Query: 229 FPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPF 288
FP+RRD G +E+I GYRAQHS RTPCKGGIR+S DVS DEVKAL++LMT+KCA VDVPF
Sbjct: 63 FPIRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPF 122
Query: 289 GGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPG 332
GGAKAG+KINPKNY++ +LEKITRRFT+ELAKKGFIG VP
Sbjct: 123 GGAKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPA 166
Score = 112 bits (281), Expect = 4e-29
Identities = 52/92 (56%), Positives = 66/92 (71%)
Query: 58 TAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEIS 117
++P FF MVE FF R I EDKLVED+K R T E K+ +VRGIL ++PC+H++ +S
Sbjct: 3 REDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRQTQEQKRNRVRGILRIIKPCNHVLSLS 62
Query: 118 FPVRRDSGDYEIITGYRAQHSTHRTPCKGATA 149
FP+RRD G +E+I GYRAQHS RTPCKG
Sbjct: 63 FPIRRDDGSWEVIEGYRAQHSHQRTPCKGGIR 94
Score = 41.1 bits (96), Expect = 1e-04
Identities = 26/61 (42%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 466 ESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMKYNLGHLDINAHACVTGKPINQGG 525
K+ D+ + T ER I T GH DINAHACVTGKPI+QGG
Sbjct: 150 MELAKKGFIGPGVDVPAPNMS-TGEREMSWIADTYASTI-GHYDINAHACVTGKPISQGG 207
Query: 526 I 526
I
Sbjct: 208 I 208
>d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 175
Score = 125 bits (314), Expect = 5e-34
Identities = 58/158 (36%), Positives = 87/158 (55%), Gaps = 20/158 (12%)
Query: 175 FFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRD 234
++M F+RA + + L D+ + ++ + FPVR D
Sbjct: 2 LYEMAVEQFNRAASLMD--LESDLAEVLR----------------RPKRVLIVEFPVRMD 43
Query: 235 SGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAKAG 294
G E+ TGYR QH+ R P KGGIR+ DV+ DEVKAL+ MT+K A +++PFGG K G
Sbjct: 44 DGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGG 103
Query: 295 IKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPG 332
++++PK S NELE+++RRF E+ IG + +P
Sbjct: 104 VRVDPKKLSRNELERLSRRFFSEIQV--IIGPYNDIPA 139
Score = 54.9 bits (132), Expect = 2e-09
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 18/87 (20%)
Query: 64 FFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRD 123
++M F+RA + + L D+ + ++ + FPVR D
Sbjct: 2 LYEMAVEQFNRAASLMD--LESDLAEVLR----------------RPKRVLIVEFPVRMD 43
Query: 124 SGDYEIITGYRAQHSTHRTPCKGATAV 150
G E+ TGYR QH+ R P KG
Sbjct: 44 DGHVEVFTGYRVQHNVARGPAKGGIRY 70
Score = 26.4 bits (58), Expect = 6.6
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 495 AIMKTAMKYNLGHLDINAHACVTGKPI 521
A N+GH VTGKP+
Sbjct: 150 AWYMDTYSMNVGH---TVLGIVTGKPV 173
>d1v9la2 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyrobaculum
islandicum [TaxId: 2277]}
Length = 176
Score = 121 bits (306), Expect = 7e-33
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 20/158 (12%)
Query: 175 FFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRD 234
F + V + + ++ ED + ++ ++ PVR D
Sbjct: 3 FLEYVLNYVKKGVELG--GFPEDFYKIL----------------SRPRRVLIVNIPVRLD 44
Query: 235 SGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAKAG 294
G +E+ GYR QH P KGG+RF +V+ + AL+ LMT K + +P+GGAK
Sbjct: 45 GGGFEVFEGYRVQHCDVLGPYKGGVRFHPEVTLADDVALAILMTLKNSLAGLPYGGAKGA 104
Query: 295 IKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPG 332
++++PK S+ ELE+++R + +A IG+ +P
Sbjct: 105 VRVDPKKLSQRELEELSRGYARAIAP--LIGDVVDIPA 140
Score = 54.2 bits (130), Expect = 4e-09
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 18/87 (20%)
Query: 64 FFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRD 123
F + V + + ++ ED + ++ ++ PVR D
Sbjct: 3 FLEYVLNYVKKGVELG--GFPEDFYKIL----------------SRPRRVLIVNIPVRLD 44
Query: 124 SGDYEIITGYRAQHSTHRTPCKGATAV 150
G +E+ GYR QH P KG
Sbjct: 45 GGGFEVFEGYRVQHCDVLGPYKGGVRF 71
>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 178
Score = 121 bits (304), Expect = 1e-32
Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 22/161 (13%)
Query: 172 NPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPV 231
+P +++V RA Q E + E+ + I+E++ PV
Sbjct: 2 DP--YEIVIKQLERAAQYME--ISEEALEFLK----------------RPQRIVEVTIPV 41
Query: 232 RRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGA 291
D G ++ TG+R QH+ R P KGGIR+ + + VKAL+A MT+K A +D+P+GG
Sbjct: 42 EMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGG 101
Query: 292 KAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPG 332
K GI ++PK S+ E E++ R + + I ++ +P
Sbjct: 102 KGGIIVDPKKLSDREKERLARGYIRAIYD--VISPYEDIPA 140
Score = 53.4 bits (128), Expect = 7e-09
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 20/89 (22%)
Query: 61 NPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPV 120
+P +++V RA Q E + E+ + I+E++ PV
Sbjct: 2 DP--YEIVIKQLERAAQYME--ISEEALEFLK----------------RPQRIVEVTIPV 41
Query: 121 RRDSGDYEIITGYRAQHSTHRTPCKGATA 149
D G ++ TG+R QH+ R P KG
Sbjct: 42 EMDDGSVKVFTGFRVQHNWARGPTKGGIR 70
Score = 29.9 bits (67), Expect = 0.57
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 466 ESFQKRISGASEKDIVHSGLD-YTMERSARAIMKTAMKYNLGHLDINAHACVTGKPIN 522
+ + I D YT + +M + A +TGKP++
Sbjct: 122 RGYIRAIYDVISPYEDIPAPDVYTNPQIMAWMMDEYET--ISRRKTPAFGIITGKPLS 177
>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium
symbiosum [TaxId: 1512]}
Length = 194
Score = 112 bits (282), Expect = 2e-29
Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 173 PKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVR 232
P+F VE + + + + +L M + +IE P
Sbjct: 19 PEFVQTVEEVLSSLGPVVD-------------AHPEYEEVALLERMVIPERVIEFRVPWE 65
Query: 233 RDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAK 292
D+G + TGYR Q + P KGG+RF+ V+ +K L FK + +P GGAK
Sbjct: 66 DDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLPMGGAK 125
Query: 293 AGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPG 332
G +P S+ E+ + + F EL + IG VP
Sbjct: 126 GGSDFDPNGKSDREVMRFCQAFMTELYR--HIGPDIDVPA 163
Score = 48.4 bits (115), Expect = 4e-07
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 13/89 (14%)
Query: 62 PKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVR 121
P+F VE + + + + +L M + +IE P
Sbjct: 19 PEFVQTVEEVLSSLGPVVD-------------AHPEYEEVALLERMVIPERVIEFRVPWE 65
Query: 122 RDSGDYEIITGYRAQHSTHRTPCKGATAV 150
D+G + TGYR Q + P KG
Sbjct: 66 DDNGKVHVNTGYRVQFNGAIGPYKGGLRF 94
>d1leha2 c.58.1.1 (A:1-134) Leucine dehydrogenase {Bacillus
sphaericus [TaxId: 1421]}
Length = 134
Score = 96.5 bits (240), Expect = 2e-24
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 218 MQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRF----SDDVSRDEVKAL 273
M+ D+ ++ F SG + A H T P GG R +++ + ++ L
Sbjct: 7 MEKYDYE-QLVFCQDEASG----LKAVIAIHDTTLGPALGGARMWTYNAEEEAIEDALRL 61
Query: 274 SALMTFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKK 321
+ MT+K A + GG K I +P ++ + RF L +
Sbjct: 62 ARGMTYKNAAAGLNLGGGKTVIIGDPFADKNEDMFRALGRFIQGLNGR 109
Score = 30.2 bits (68), Expect = 0.25
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 107 MQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGAT 148
M+ D+ ++ F SG + A H T P G
Sbjct: 7 MEKYDYE-QLVFCQDEASG----LKAVIAIHDTTLGPALGGA 43
>d1c1da2 c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rhodococcus
sp., M4 [TaxId: 1831]}
Length = 148
Score = 85.7 bits (212), Expect = 2e-20
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 233 RDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDE----VKALSALMTFKCACVDVPF 288
+G + +I ST P GG R + + + L+ MT K A ++P
Sbjct: 19 AMTGAHFVI----RLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPM 74
Query: 289 GGAKAGIKINPKNYS--ENELEKITRRFTLELAKKG 322
GG K+ I + +S + +I R + K
Sbjct: 75 GGGKSVIALPAPRHSIDPSTWARILRIHAENIDKLS 110
Score = 28.3 bits (63), Expect = 1.2
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 4/27 (14%)
Query: 122 RDSGDYEIITGYRAQHSTHRTPCKGAT 148
+G + +I ST P G T
Sbjct: 19 AMTGAHFVI----RLDSTQLGPAAGGT 41
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos
taurus) [TaxId: 9913]}
Length = 293
Score = 74.0 bits (181), Expect = 3e-15
Identities = 50/64 (78%), Positives = 54/64 (84%)
Query: 443 ESVQESLERRFGNVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMK 502
SVQESLER+FG GG IP+ P+ FQ RISGASEKDIVHSGL YTMERSAR IM+TAMK
Sbjct: 203 MSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMK 262
Query: 503 YNLG 506
YNLG
Sbjct: 263 YNLG 266
Score = 55.9 bits (134), Expect = 3e-09
Identities = 32/42 (76%), Positives = 37/42 (88%)
Query: 527 HGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFIVQ 568
HGRISATGRGVFHG+ENFI A+YMS++G TPG+G KTF VQ
Sbjct: 1 HGRISATGRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQ 42
Score = 52.8 bits (126), Expect = 4e-08
Identities = 34/60 (56%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
Query: 383 LEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAAN 442
LE++KL +GTI+GFP A YEG ++ CDI +PAA EK +TK+NA +++AKIIAE AN
Sbjct: 83 LEDFKLQHGTILGFPKAKIYEGS-ILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGAN 141
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 239
Score = 51.7 bits (123), Expect = 5e-08
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 385 EYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAANES 444
++K ++G++ FPGA E L+ D+ PAA+E+VITK NA I+AKI+AE AN
Sbjct: 82 KWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITKKNADNIKAKIVAEVANGP 141
Query: 445 VQESLERRFG------------NVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERS 492
V + N GG E Q + V LD M ++
Sbjct: 142 VTPEADEILFEKGILQIPDFLCNAGGVTVSY-FEWVQNITGYYWTIEEVRERLDKKMTKA 200
Query: 493 ARAIMKTAMKYNL 505
+ A + N+
Sbjct: 201 FYDVYNIAKEKNI 213
Score = 40.5 bits (94), Expect = 3e-04
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 524 GGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFIVQ 568
GG GRI AT RG + + + ++ GKT +Q
Sbjct: 1 GGSLGRIEATARGASYTIREAAKVLGWDTL-------KGKTIAIQ 38
>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 234
Score = 50.6 bits (120), Expect = 1e-07
Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 15/133 (11%)
Query: 386 YKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAANESV 445
YK ++GT+V +P E L+ DI VPAA+E I NA +I+AK + E AN
Sbjct: 82 YKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPT 141
Query: 446 QESLERRFGNVGGRIPVTPS-------------ESFQKRISGASEKDIVHSGLDYTMERS 492
+ G I V P E Q S + D V + L+ M+ +
Sbjct: 142 TPEADEILSRRG--ILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRNALEKMMKGA 199
Query: 493 ARAIMKTAMKYNL 505
+MK KYN+
Sbjct: 200 FNDVMKVKEKYNV 212
Score = 37.1 bits (85), Expect = 0.003
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 524 GGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFIVQ 568
GG GR ATGRGV M ++G P T VQ
Sbjct: 1 GGSKGREEATGRGVKVCAG------LAMDVLGIDP--KKATVAVQ 37
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus
sphaericus [TaxId: 1421]}
Length = 230
Score = 46.2 bits (109), Expect = 4e-06
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 379 KPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIA 438
K + + K V GA + CDIF P A+ V+ +++AK+IA
Sbjct: 64 KLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCALGAVLNDFTIPQLKAKVIA 123
Query: 439 EAAN 442
+A+
Sbjct: 124 GSAD 127
Score = 45.8 bits (108), Expect = 4e-06
Identities = 11/51 (21%), Positives = 15/51 (29%), Gaps = 6/51 (11%)
Query: 518 GKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFIVQ 568
G G T GV+ G++ EA + G VQ
Sbjct: 1 GISPAFGSSGNPSPVTAYGVYRGMKAAAKEAF------GSDSLEGLAVSVQ 45
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium
symbiosum [TaxId: 1512]}
Length = 255
Score = 46.3 bits (109), Expect = 4e-06
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 519 KPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFIVQ 568
K + GG R ATG G + +E + N GKT +
Sbjct: 1 KARSFGGSLVRPEATGYGSVYYVEAVMKHEND--------TLVGKTVALA 42
Score = 45.9 bits (108), Expect = 5e-06
Identities = 30/154 (19%), Positives = 45/154 (29%), Gaps = 18/154 (11%)
Query: 372 GLPTHTRKPLALEEYKLDNGTIVGFP---GAVPYEGENLMYEPCDIFVPAAVEKVITKNN 428
G+ T + LE + + G + GE + DI +P A + +
Sbjct: 77 GITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQ 136
Query: 429 AHKIQA---KIIAEAANESVQESLERRFGNVGGRIPVTP----------SESFQKRISG- 474
A KI A K E AN R + S + S
Sbjct: 137 AKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSER 196
Query: 475 -ASEKDIVHSGLDYTMERSARAIMKTAMKYNLGH 507
+ + V S L M A +Y LG+
Sbjct: 197 LSWTAEEVDSKLHQVMTDIHDGSAAAAERYGLGY 230
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum
islandicum [TaxId: 2277]}
Length = 242
Score = 42.9 bits (100), Expect = 4e-05
Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 14/122 (11%)
Query: 396 FPGAVPYEGENLMYE-PCDIFVPAAVEKVITKNNAHKIQAKIIAEAANESVQESLERRFG 454
A + + +++ DIFVPAA+E VI +NA ++A+++ E AN ER
Sbjct: 96 KDNAEFVKNPDAIFKLDVDIFVPAAIENVIRGDNAGLVKARLVVEGANGPTTPEAERILY 155
Query: 455 ------------NVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMK 502
N GG I + E++ L+ M + + K +
Sbjct: 156 ERGVVVVPDILANAGGVIMSYLEWVENLQWYIWDEEE-TRKRLENIMVNNVERVYKRWQR 214
Query: 503 YN 504
Sbjct: 215 EK 216
Score = 34.4 bits (78), Expect = 0.023
Identities = 12/44 (27%), Positives = 14/44 (31%), Gaps = 8/44 (18%)
Query: 525 GIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFIVQ 568
G R ATG GV + G GKT +Q
Sbjct: 2 GNPVREYATGFGVAVATREMAKKLW--------GGIEGKTVAIQ 37
>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal
domain {Barley (Hordeum vulgare) [TaxId: 4513]}
Length = 388
Score = 29.6 bits (65), Expect = 0.93
Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 10/144 (6%)
Query: 81 DKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTH 140
+ V D+ GRMT+ +K I Q + + V RD+ +++G +
Sbjct: 13 EDRVADLLGRMTLAEK------IGQMTQI--ERLVATPDVLRDNFIGSLLSGGGSVPRKG 64
Query: 141 RTPCKGATAVQSQQRNLHDIPEKLKDIPTAENPKFFDMVEFFFHRACQIAEDKL--VEDI 198
T + V Q+ + I + + V + +
Sbjct: 65 ATAKEWQDMVDGFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDPYLV 124
Query: 199 KGRMTIEDKKKKVRGILLGMQPCD 222
K + + GI PC
Sbjct: 125 KRIGEATALEVRATGIQYAFAPCI 148
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase
{Rhodococcus sp., M4 [TaxId: 1831]}
Length = 201
Score = 29.0 bits (64), Expect = 1.2
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 7/37 (18%)
Query: 532 ATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFIVQ 568
T GVF ++ + S+ G T +VQ
Sbjct: 4 TTAVGVFEAMKATVAHRGLGSL-------DGLTVLVQ 33
>d1s7ja_ d.21.1.2 (A:) Hypothetical protein EF0119 {Enterococcus
faecalis [TaxId: 1351]}
Length = 260
Score = 27.6 bits (60), Expect = 3.5
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 277 MTFKCACVDV----PFGGAKAGIKINPKNYSENELEKITRRFTL 316
M++ VD F G A + + K E ++ I L
Sbjct: 1 MSYPYYIVDAFAEEVFKGNPAAVYVLEKWLPEAVMQNIAIENNL 44
>d1dc1a_ c.52.1.11 (A:) Restriction endonuclease BsobI {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 27.2 bits (60), Expect = 6.1
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 406 NLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAANESVQESL 449
P IF+ AA+E + + ++Q+ + +AN + E +
Sbjct: 266 EKGLSPKTIFIGAAIEHSMAEEIWDQLQSGSLTNSANLTKTEQV 309
>d1ogpa2 d.176.1.1 (A:2-262) Sulfite oxidase, middle catalytic
domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 261
Score = 27.0 bits (59), Expect = 6.1
Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 12/75 (16%)
Query: 360 PQIWVQEKGKCPGLPTHTRKPLALE--EYKLDNGTI-------VGFPGAVPYEGENLMYE 410
P + QE + P L + ++P E L + + G +P Y
Sbjct: 6 PSEYSQEPPRHPSLKVNAKEPFNAEPPRSALVSSYVTPVDLFYKRNHGPIPIVDHLQSYS 65
Query: 411 PCDIFVPAAVEKVIT 425
+ + ++
Sbjct: 66 ---VTLTGLIQNPRK 77
>d1hn6a_ g.61.1.1 (A:) Apical membrane antigen 1 {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 110
Score = 25.7 bits (56), Expect = 6.8
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 401 PYEGENLMYEPCDIFVPAAVEK--VITKNNAHKIQAKIIAEAANESVQESLERR 452
P + E + C FV VE+ +T NN ++ + E A+ + +
Sbjct: 56 PCDPEMVSNSTCRFFVCKCVERRAEVTSNNEVVVKEEYKDEYADIPEHKPTYDK 109
>d2e2aa_ a.7.2.1 (A:) Enzyme IIa from lactose specific PTS, IIa-lac
{Lactococcus lactis [TaxId: 1358]}
Length = 104
Score = 25.3 bits (56), Expect = 8.0
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 427 NNAHKIQAKII-AEAANESVQESL 449
AH Q ++ EA+ E + S+
Sbjct: 51 AEAHSSQTGMLAREASGEELPYSV 74
>d1qy9a1 d.21.1.2 (A:3-129) Hypothetical protein YddE {Escherichia
coli [TaxId: 562]}
Length = 127
Score = 25.7 bits (56), Expect = 9.2
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 282 ACVDVPFGGAKAGIKINPKNYSENELEKITRRF 314
A PF G AG+ N SE +++ I R
Sbjct: 8 AFTSQPFRGNSAGVVFPADNLSEAQMQLIAREL 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.411
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,174,522
Number of extensions: 106223
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 41
Length of query: 568
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 478
Effective length of database: 1,171,896
Effective search space: 560166288
Effective search space used: 560166288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)