BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8848
         (459 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P0AFK0|PMBA_ECOLI Protein PmbA OS=Escherichia coli (strain K12) GN=pmbA PE=1 SV=1
          Length = 450

 Score =  338 bits (868), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 169/423 (39%), Positives = 266/423 (62%), Gaps = 8/423 (1%)

Query: 37  SSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQDGKKMFYGNSSTSDFCKKSLYD 96
           + +  ++  G SV  R G+++ +E N+D  + + +Y Q+ K    G++S++D   +++  
Sbjct: 36  AEVAVSKTTGISVSTRYGEVENVEFNSDGALGITVYHQNRK----GSASSTDLSPQAIAR 91

Query: 97  TINAAYNIARFTASDNFAGLPDENTLEMNPLDFKLYTPWFLSIDDAKLIAYRCENEAFNF 156
           T+ AA +IAR+T+ D  AG+ D+  L  +  D  L+ P  +S D+A  +A R E  A   
Sbjct: 92  TVQAALDIARYTSPDPCAGVADKELLAFDAPDLDLFHPAEVSPDEAIELAARAEQAALQA 151

Query: 157 NSLIVNNENTGVTTQQSHFLLANSHGFMSGYPFSKHIISISPIAIKGKEMQRDNWYSSNS 216
           +  I N E     +     +  NSHG + GY  ++H +S   IA +  +M+RD  Y+   
Sbjct: 152 DKRITNTEGGSFNSHYGVKVFGNSHGMLQGYCSTRHSLSSCVIAEENGDMERDYAYTIGR 211

Query: 217 DPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCPVLFEAPLAFELLNIFARLISGNSLYR 276
               L  PE +G   A+RT+SRL  +K+ST K PV+F   +A  L       I+G S+YR
Sbjct: 212 AMSDLQTPEWVGADCARRTLSRLSPRKLSTMKAPVIFANEVATGLFGHLVGAIAGGSVYR 271

Query: 277 KSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVKNGIIQGYFLST 336
           KSTFL+DSLGK+I    + I E PH+L    S+ FD+EGV+T++R ++K+GI+  + L++
Sbjct: 272 KSTFLLDSLGKQILPDWLTIEEHPHLLKGLASTPFDSEGVRTERRDIIKDGILTQWLLTS 331

Query: 337 YSAKKLGMKTTGNSGGAHHLIIISNKTKSSDNLKEMLKKMNTGLLVTELMGDGINYITGD 396
           YSA+KLG+K+TG++GG H+  I         + ++MLK+M TGL+VTELMG G++ ITGD
Sbjct: 332 YSARKLGLKSTGHAGGIHNWRIAGQGL----SFEQMLKEMGTGLVVTELMGQGVSAITGD 387

Query: 397 YSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQIVAIGSDVLTRNSNTSGSILIENMII 456
           YS+GA G+W+ENG+IQY V EITI+G L++M++ IV +G+D+ TR++   GS+L+  M I
Sbjct: 388 YSRGAAGFWVENGEIQYPVSEITIAGNLKDMWRNIVTVGNDIETRSNIQCGSVLLPEMKI 447

Query: 457 AGK 459
           AG+
Sbjct: 448 AGQ 450


>sp|P0AFK1|PMBA_ECO57 Protein PmbA OS=Escherichia coli O157:H7 GN=pmbA PE=3 SV=1
          Length = 450

 Score =  338 bits (868), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 169/423 (39%), Positives = 266/423 (62%), Gaps = 8/423 (1%)

Query: 37  SSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQDGKKMFYGNSSTSDFCKKSLYD 96
           + +  ++  G SV  R G+++ +E N+D  + + +Y Q+ K    G++S++D   +++  
Sbjct: 36  AEVAVSKTTGISVSTRYGEVENVEFNSDGALGITVYHQNRK----GSASSTDLSPQAIAR 91

Query: 97  TINAAYNIARFTASDNFAGLPDENTLEMNPLDFKLYTPWFLSIDDAKLIAYRCENEAFNF 156
           T+ AA +IAR+T+ D  AG+ D+  L  +  D  L+ P  +S D+A  +A R E  A   
Sbjct: 92  TVQAALDIARYTSPDPCAGVADKELLAFDAPDLDLFHPAEVSPDEAIELAARAEQAALQA 151

Query: 157 NSLIVNNENTGVTTQQSHFLLANSHGFMSGYPFSKHIISISPIAIKGKEMQRDNWYSSNS 216
           +  I N E     +     +  NSHG + GY  ++H +S   IA +  +M+RD  Y+   
Sbjct: 152 DKRITNTEGGSFNSHYGVKVFGNSHGMLQGYCSTRHSLSSCVIAEENGDMERDYAYTIGR 211

Query: 217 DPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCPVLFEAPLAFELLNIFARLISGNSLYR 276
               L  PE +G   A+RT+SRL  +K+ST K PV+F   +A  L       I+G S+YR
Sbjct: 212 AMSDLQTPEWVGADCARRTLSRLSPRKLSTMKAPVIFANEVATGLFGHLVGAIAGGSVYR 271

Query: 277 KSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVKNGIIQGYFLST 336
           KSTFL+DSLGK+I    + I E PH+L    S+ FD+EGV+T++R ++K+GI+  + L++
Sbjct: 272 KSTFLLDSLGKQILPDWLTIEEHPHLLKGLASTPFDSEGVRTERRDIIKDGILTQWLLTS 331

Query: 337 YSAKKLGMKTTGNSGGAHHLIIISNKTKSSDNLKEMLKKMNTGLLVTELMGDGINYITGD 396
           YSA+KLG+K+TG++GG H+  I         + ++MLK+M TGL+VTELMG G++ ITGD
Sbjct: 332 YSARKLGLKSTGHAGGIHNWRIAGQGL----SFEQMLKEMGTGLVVTELMGQGVSAITGD 387

Query: 397 YSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQIVAIGSDVLTRNSNTSGSILIENMII 456
           YS+GA G+W+ENG+IQY V EITI+G L++M++ IV +G+D+ TR++   GS+L+  M I
Sbjct: 388 YSRGAAGFWVENGEIQYPVSEITIAGNLKDMWRNIVTVGNDIETRSNIQCGSVLLPEMKI 447

Query: 457 AGK 459
           AG+
Sbjct: 448 AGQ 450


>sp|P45077|PMBA_HAEIN Protein PmbA homolog OS=Haemophilus influenzae (strain ATCC 51907 /
           DSM 11121 / KW20 / Rd) GN=pmbA PE=3 SV=1
          Length = 451

 Score =  315 bits (808), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 169/444 (38%), Positives = 271/444 (61%), Gaps = 8/444 (1%)

Query: 15  KSEFQQLAQDMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQ 74
           + E +Q     +  A K GAS + +   + +G SV  R  +I+ +E  ND  + + +Y+ 
Sbjct: 15  EQELRQAVSFAVELATKAGAS-AEVAVTKVSGLSVSARLQEIENVEFTNDGALGISVYMG 73

Query: 75  DGKKMFYGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPDENTLEMNPLDFKLYTP 134
             K    GN+STSD  + ++ + + AA  IA++T+ D+  GL D++ +  +  D +LY  
Sbjct: 74  QQK----GNASTSDLSESAIKNAVEAALAIAKYTSPDDCTGLADKDLMAFDAPDLELYHA 129

Query: 135 WFLSIDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQSHFLLANSHGFMSGYPFSKHII 194
             + +D A  +A + E  A   +  I+N+      +     +  NSHG +  Y  S++ +
Sbjct: 130 ADIDVDKATELALQAEQAALQADERIINSNGASFNSHTGVKVYGNSHGMLQSYLSSRYSL 189

Query: 195 SISPIAIKGKEMQRDNWYSSNSDPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCPVLFE 254
           S S I      ++ D  Y+ + +  KL  P  +G   AK+ +SRL  +K+STR+ PV+F 
Sbjct: 190 SCSVIGGVEDALENDYEYTISREFDKLQSPIWVGENCAKKVVSRLNPQKLSTREVPVIFL 249

Query: 255 APLAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNE 314
             +A  +++ FA  ISG SLYRKS+FL+D LGK++      I E PH+L    S+ FD+E
Sbjct: 250 NDVATGIISHFAAAISGGSLYRKSSFLLDHLGKQVLPDWFSISERPHLLRRLASTPFDSE 309

Query: 315 GVKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGNSGGAHHLIIISNKTKSSDNLKEMLK 374
           GV+TQ R +V+NGI+Q Y +++YS KKLGM +TG++GG H+ ++  N T     L  +L+
Sbjct: 310 GVRTQDREIVENGILQTYLVTSYSGKKLGMSSTGHAGGIHNWLVKPNLTG---GLTALLR 366

Query: 375 KMNTGLLVTELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQIVAI 434
           +M TGLLVT++MG G+N +TGDYS+GA G+W+ENG+IQY V EITI+G+LQ+M K ++A+
Sbjct: 367 QMGTGLLVTDVMGQGVNIVTGDYSRGASGFWVENGEIQYPVAEITIAGQLQDMLKNMLAV 426

Query: 435 GSDVLTRNSNTSGSILIENMIIAG 458
             D+  R++  +GSIL++ M I+G
Sbjct: 427 ADDIEHRSNIQTGSILLDKMKISG 450


>sp|Q89AY6|PMBA_BUCBP Protein PmbA homolog OS=Buchnera aphidicola subsp. Baizongia
           pistaciae (strain Bp) GN=pmbA PE=3 SV=1
          Length = 448

 Score =  300 bits (768), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 167/440 (37%), Positives = 264/440 (60%), Gaps = 11/440 (2%)

Query: 23  QDMLNYAKKIGASHS---SIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQDGKKM 79
           + ++ Y   + A+HS    +   +  G  V +RK  ++ IE N +  + + +Y  + K M
Sbjct: 15  KKIVEYILNLAANHSVFSEVVIEKNCGVDVLIRKNSVNSIEFNKNNILTITVYKNNRKGM 74

Query: 80  FYGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPDENTLEMNPL-DFKLYTPWFLS 138
                S++D   KS+++  ++   I  +++ D F+GLPD   L +N + D  LY  W  +
Sbjct: 75  V----SSTDLSFKSIHNVFSSVMGIVFYSSPDEFSGLPDRKLLAINKVKDLDLYHDWDWN 130

Query: 139 IDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQSHFLLANSHGFMSGYPFSKHIISISP 198
           I+ A  IA   E EAF  +  I+N+E +   +        NS G +  Y  + +  S   
Sbjct: 131 INHAIEIAKLSEREAFKEDKRIINSEGSCFNSLVRTRAFGNSLGMIECYSTTLYSTSCCV 190

Query: 199 IAIKGKEMQRDNWYSSNSDPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCPVLFEAPLA 258
           IA    +MQRD  +S + D   L+ PE +G  +AK+ +SRL +KK+ T K   +F + +A
Sbjct: 191 IAGDNGDMQRDFSFSVSRDMNDLNLPEKVGQDSAKKALSRLNSKKLLTMKTSAIFSSEIA 250

Query: 259 FELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGVKT 318
           FE    FA+ I+GN++Y+KSTFL+ SL  ++F + + I E PHI     S  FD EGV T
Sbjct: 251 FEFFINFAKAINGNNVYQKSTFLLHSLNTQVFPNWLTIEERPHIKKGLSSKCFDAEGVMT 310

Query: 319 QKRLVVKNGIIQGYFLSTYSAKKLGMKTTGNSGGAHHLIIISNKTKSSDNLKEMLKKMNT 378
           + + +V  GI++ + L TYSA+K+ + +TGNSGG H+ +I+ N   S++ L+ +LK MNT
Sbjct: 311 KTKKIVNKGILKTWLLDTYSARKINLVSTGNSGGIHNWLILGN---SNEGLQSLLKSMNT 367

Query: 379 GLLVTELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQIVAIGSDV 438
           GLL+TEL+G G++  TG+YS+GA G+W++ G I+Y V EITISG L+NMFK IV+IG+D+
Sbjct: 368 GLLITELLGQGVSITTGNYSRGAVGFWVDQGVIKYPVNEITISGNLKNMFKDIVSIGNDI 427

Query: 439 LTRNSNTSGSILIENMIIAG 458
             R+S  SGSIL+  + ++G
Sbjct: 428 DKRHSIQSGSILLSQIQVSG 447


>sp|Q8KA30|PMBA_BUCAP Protein PmbA homolog OS=Buchnera aphidicola subsp. Schizaphis
           graminum (strain Sg) GN=pmbA PE=3 SV=1
          Length = 447

 Score =  288 bits (736), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 171/438 (39%), Positives = 258/438 (58%), Gaps = 15/438 (3%)

Query: 21  LAQDMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQDGKKMF 80
           LAQ+ +N + ++    +        G SV +R   ++ +E NND  + V +Y     K  
Sbjct: 24  LAQEKVNCSIEVCVKKTI-------GISVNIRNSIVENVEFNNDSILFVTVY----NKFS 72

Query: 81  YGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPDENTLEMNPLDFKLYTPWFLSID 140
            G SS+ DF    +   +  A +I++ T+SD F+GLPD   L     D  L+ P   +I 
Sbjct: 73  KGVSSSKDFSTNGIKKMLEIAIDISKHTSSDFFSGLPDAKFLCFKAQDLDLFYPSEFNIK 132

Query: 141 DAKLIAYRCENEAFNFNSLIVNNENTGVTTQQSHFLLANSHGFMSGYPFSKHIISISPIA 200
           +A   A   E EAF F+  I+N+E +  +   +  + ANS G +  Y  +++      IA
Sbjct: 133 NAINFASESEREAFKFDKRIINSEGSFFSNHITIKVFANSLGMLEQYKSTRYSNYNCMIA 192

Query: 201 IKGKEMQRDNWYSSNSDPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCPVLFEAPLAFE 260
                MQRD  YS++     L++P+++G   A   ISRL +KKI+T KCPV+F    +  
Sbjct: 193 KDNSTMQRDFSYSTSRKLDDLEKPDVLGQKTATNAISRLGSKKINTIKCPVIFSKETSSI 252

Query: 261 LLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGVKTQK 320
             +     ISG+++YRKSTFL+  L K+IF   + I E+PHI    GS  FD+EGV T  
Sbjct: 253 FFSHLIPAISGDNIYRKSTFLLYDLKKRIFPEWLNIEENPHIKKGLGSKPFDSEGVSTTI 312

Query: 321 RLVVKNGIIQGYFLSTYSAKKLGMKTTGNSGGAHHLIIISNKTKSSDNLKEMLKKMNTGL 380
           R ++KNGI++ + L+TY+A+KLG+ TTG+SGG  +  ++SNK  S    KE+LK M TGL
Sbjct: 313 RSIIKNGILETWLLNTYNARKLGLTTTGHSGGISNW-LVSNKNIS---FKELLKMMKTGL 368

Query: 381 LVTELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQIVAIGSDVLT 440
           L+TELMG G++ ++G+YS+GA G+WIENGKI+Y V EITISG L+ M+  I++I +DV  
Sbjct: 369 LITELMGQGVDIVSGNYSRGAVGFWIENGKIKYPVNEITISGNLKKMWNSILSISNDVNM 428

Query: 441 RNSNTSGSILIENMIIAG 458
            ++   GS L+  + I+G
Sbjct: 429 YSNIQCGSTLLSEIQISG 446


>sp|P57191|PMBA_BUCAI Protein PmbA homolog OS=Buchnera aphidicola subsp. Acyrthosiphon
           pisum (strain APS) GN=pmbA PE=3 SV=1
          Length = 446

 Score =  286 bits (731), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 154/397 (38%), Positives = 247/397 (62%), Gaps = 8/397 (2%)

Query: 62  NNDKNMNVIIYIQDGKKMFYGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPDENT 121
           N+D  + + +Y     K   G+ S+ DF  K++ + ++ A NI+++++SD F+GLPD   
Sbjct: 57  NSDGGLFITVY----NKFSKGSVSSKDFSIKNIKNMLDIAINISKYSSSDFFSGLPDIKF 112

Query: 122 LEMNPLDFKLYTPWFLSIDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQSHFLLANSH 181
           L  + ++  L+ PW  +I++A  ++   E  AF  +  IVN+E + + +  +  +  NS 
Sbjct: 113 LCFHSMELDLFHPWEFNIENAIKMSILSEKSAFESDKRIVNSEGSFLNSHTTINVFGNSL 172

Query: 182 GFMSGYPFSKHIISISPIAIKGKEMQRDNWYSSNSDPKKLDQPEIIGFYAAKRTISRLKA 241
           G +  Y  +++      IA     MQRD  YS +     L +PEI+G   AKR ISRL +
Sbjct: 173 GVLEKYKSTRYSNYTCMIAKDKNSMQRDFDYSLSRRIDDLIKPEILGQKTAKRAISRLGS 232

Query: 242 KKISTRKCPVLFEAPLAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPH 301
           +KI T + P++F + ++    +  A  ISG+++Y+KSTFL++ L  KIF   + I E+PH
Sbjct: 233 RKIQTMRSPIIFSSEISHMFFSHLASAISGDNVYQKSTFLINDLKMKIFPDWLDIEENPH 292

Query: 302 ILGSFGSSSFDNEGVKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGNSGGAHHLIIISN 361
           +    GS  FDNEGV T+ + ++K GI+Q + L+ Y+A+KL + +TGN GG H+  ++SN
Sbjct: 293 LKRGLGSKPFDNEGVATEIKYIIKAGILQTWLLNCYNARKLKLDSTGNCGGIHNW-LVSN 351

Query: 362 KTKSSDNLKEMLKKMNTGLLVTELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITIS 421
           +  S    +E+LKKM+ G+LVTELMG G++ I G+YS+GA G+W+E GKI Y + EITIS
Sbjct: 352 QNIS---FEELLKKMDQGILVTELMGQGVDIINGNYSRGAVGFWVEKGKISYPINEITIS 408

Query: 422 GKLQNMFKQIVAIGSDVLTRNSNTSGSILIENMIIAG 458
           G L+NM+  IV+I SDV  RN+   GS+L+  + ++G
Sbjct: 409 GNLRNMWNNIVSISSDVDRRNNIQCGSVLLSEIQVSG 445


>sp|Q58403|Y996_METJA Uncharacterized protein MJ0996 OS=Methanocaldococcus jannaschii
           (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
           100440) GN=MJ0996 PE=3 SV=2
          Length = 451

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 115/228 (50%), Gaps = 27/228 (11%)

Query: 227 IGFYAAKRTISRLKAKKISTRKCPV-LFEAPLAFELLNIFARLISGNS-----LYRKSTF 280
           +   A  R +  LKAK      CP   F+  L  EL  +F     G++     + +  + 
Sbjct: 203 LALEAKNRALRLLKAKP-----CPKGKFKVILDPELAGVFIHEAVGHASEADLVLQNDSV 257

Query: 281 LVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVKNGIIQGYFLSTYSAK 340
             D LG+++ S ++ +I+D  I G+FGS  +D+EGV+ +K ++++NGI++ Y  S  +A 
Sbjct: 258 FKDKLGERVGSEYVTVIDDATIEGAFGSYKYDDEGVEGKKTVIIENGILKTYLHSRETAG 317

Query: 341 KLGMKTTGN---SGGAHHLIIISNK-TKSSD-NLKEMLKKMNTGLLVTELMGDGINYITG 395
           ++  + TGN    G    ++ +SN   K  D + +E+L+    G+ +    G  +     
Sbjct: 318 RMDAELTGNGRAEGLNKPIVRMSNTFIKPGDWSFEELLEDTKEGIFLKGSRGGQV----- 372

Query: 396 DYSKGAF------GYWIENGKIQYSVEEITISGKLQNMFKQIVAIGSD 437
           D  KG F       Y IENG++   +++  +SG++ ++  ++ A+  D
Sbjct: 373 DTGKGLFQFSAVEAYLIENGELTQVLKDAGLSGEILDILFKVDAVTKD 420


>sp|P73754|Y863_SYNY3 Uncharacterized protein slr0863 OS=Synechocystis sp. (strain PCC
           6803 / Kazusa) GN=slr0863 PE=3 SV=1
          Length = 463

 Score = 75.1 bits (183), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 101/420 (24%), Positives = 172/420 (40%), Gaps = 39/420 (9%)

Query: 38  SIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQDGKKMFYGNSSTSDFCKKSLYDT 97
           SI   +  G  + +R  +++ + +       V +  Q G    +G +S + +  + L   
Sbjct: 25  SIRLEQSEGTQISLRSDQVETLSEGIAMGGQVRVCHQGG----WGFASFNRW--EQLRQR 78

Query: 98  INAAYNIARFTASDNFAGLPDENTLE--MNPLDFKLYTPWFLSIDDAKLIAYRCENEAFN 155
           +  A   AR    D     P +   +  +NPL  K   P  +S+ D K +   C++    
Sbjct: 79  LEEAIAAARLIGDDETLLAPIDPVQQTFINPLTGK--DPRQISLADKKAL---CDH---- 129

Query: 156 FNSLIVNNENTGVTTQ------QSHFLLANSHGFMSGYPFSKHIISISPIAIKGKEMQ-- 207
           +N L+    +   TT       Q   LLA S G +    +    +  +  A  G  +Q  
Sbjct: 130 YNDLLRGTSDKITTTHVRYSDSQQTVLLATSEGTLLEQCWWDLEMRFAATAKDGNGVQVG 189

Query: 208 RDNWYSSNS--DPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCPVLFEAPLAFELLN-I 264
           R+   S     D + LDQ   +   AA+R +  L    +  +  PV+ +  L    ++  
Sbjct: 190 RETTGSRRGYGDLENLDQ---VVQGAAQRAVKALTLPTVQGKTYPVVIDPILTGLFVHEA 246

Query: 265 FARLISGNSLYRKSTFL-VDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLV 323
           F  L   + LY    FL V SLG++     +QI +     G  GS  FD+EGV      +
Sbjct: 247 FGHLSEADMLYENPDFLEVMSLGRRFGPPELQIFDGAAPPGHRGSYGFDDEGVPASTTQL 306

Query: 324 VKNGIIQGYFLSTYSAKKLGMKTTGNSGGA-HHLIIISNKT-----KSSDNLKEMLKKMN 377
           +K+G + G   S  +A KLG K TGN+    +H   I   T     +    +  +L  + 
Sbjct: 307 IKDGELVGRLHSRETAGKLGEKPTGNARCLNYHYPPIVRMTNTWIGRGETPVANLLDGIE 366

Query: 378 TGLLVTELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQIVAIGSD 437
            G+     +G   N     +S G   + I +G++   V+++T+SG +      I AI  D
Sbjct: 367 EGIYAQNWLGGMTNGEMFTFSAGE-AWMIRHGQLAEPVKDVTLSGNVFKTLANIEAIADD 425


>sp|O26944|Y856_METTH Uncharacterized protein MTH_856 OS=Methanothermobacter
           thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
           10044 / NBRC 100330 / Delta H) GN=MTH_856 PE=3 SV=1
          Length = 454

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 115/224 (51%), Gaps = 16/224 (7%)

Query: 225 EIIGFYAAKRTISRLKAKKISTRKCPVLFEAPLAFELLNIFARLISGNS-----LYRKST 279
           E +G    ++ +  LKA    + +  ++ +     EL  +F     G++     + +  +
Sbjct: 202 EELGRRTGEKAVRLLKASPPPSGRFDIVTDP----ELTGVFIHEALGHAAEADLILQGDS 257

Query: 280 FLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVKNGIIQGYFLSTYSA 339
            L   LG+KI S  + II+DP I G FGS S+D EGV+  + ++V+NG++     S  +A
Sbjct: 258 ILEGKLGEKIASEGVTIIDDPTIDG-FGSYSYDAEGVRAAETVLVENGVLTSLLNSRETA 316

Query: 340 KKLGMKTTGNSG---GAHHLIIISNK-TKSSD-NLKEMLKKMNTGLLVTELMGDGINYIT 394
            KLG++ +GN+    G   ++ +SN   K  D +  E+++ +  G+ +    G  ++   
Sbjct: 317 FKLGLEPSGNARSAIGDQPIVRMSNTYLKPGDLSFDELIEDIRNGVYLRGSRGGQVDTGK 376

Query: 395 GDYS-KGAFGYWIENGKIQYSVEEITISGKLQNMFKQIVAIGSD 437
           G +    A  + I++G+I   V+++++SG +    K +  +GSD
Sbjct: 377 GIFQFNAAESFRIQDGEIAEPVKDVSLSGNVLETLKNVDGVGSD 420


>sp|O29602|Y655_ARCFU Uncharacterized protein AF_0655 OS=Archaeoglobus fulgidus (strain
           ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
           GN=AF_0655 PE=3 SV=1
          Length = 425

 Score = 71.6 bits (174), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 96/180 (53%), Gaps = 9/180 (5%)

Query: 265 FARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVV 324
           F   +  + + + +T L   L +K+    + II+DP  L  FG   FD+EGV+ +K+++V
Sbjct: 217 FGHAVEADHVLQGATVLKGRLNEKVADESVTIIDDP-TLPEFGFFPFDDEGVRAEKKVIV 275

Query: 325 KNGIIQGYFLSTYSAKKLGMKTTGNS---GGAHHLIIISNKTKSSDN--LKEMLKKMNTG 379
           ++G+++ +  S  +AKKLG    GN+   G    ++ +SN    + +    E+L++   G
Sbjct: 276 EDGVLKSFLHSRETAKKLG-GVAGNARSQGVDVPIVRMSNTYIDTHHYSFDELLEECRDG 334

Query: 380 LLVTELMGDGINYITGDYSKGA-FGYWIENGKIQYSVEEITISGKLQNMFKQIVAIGSDV 438
           + +    G   N  TG +   A +GY I+NG++   V ++++SG    + +  V IG ++
Sbjct: 335 VYLVGSRGGETNPATGYFHFNAQYGYLIKNGELAEMVRDVSLSGNTLEILRN-VKIGREI 393


>sp|P57478|TLDD_BUCAI Protein TldD homolog OS=Buchnera aphidicola subsp. Acyrthosiphon
           pisum (strain APS) GN=tldD PE=3 SV=1
          Length = 483

 Score = 65.9 bits (159), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 106/220 (48%), Gaps = 16/220 (7%)

Query: 231 AAKRTISRLKAKKISTRKCPVLFEAPLAFELLN-IFARLISGNSLYRKSTFLVDSLGKKI 289
           A +  +  L +K+  +   PV+  +     LL+      + G+   + ++   + +GKK+
Sbjct: 232 AVRIALLNLSSKEALSGTFPVVLGSGWPGVLLHEAIGHGLEGDFNRKGTSIFTNMIGKKV 291

Query: 290 FSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGN 349
            S    II+D  I    GS S D+EG   QK ++++NGI++ Y     +A+ +G+K+TGN
Sbjct: 292 ASELCTIIDDGTIKNQRGSLSIDDEGTPGQKNILIENGILKKYMQDKLNARLMGVKSTGN 351

Query: 350 SGGAHHLII----------ISNKTKSSDNLKEMLKKMNTGLLVTELMGDGINYITGDYS- 398
                +  +          +S K+K    L +++K ++ G+      G  ++  +G +  
Sbjct: 352 GRRESYSCLPMPRMTNTYMLSGKSK----LDDIIKSVDYGIYAVNFSGGQVDITSGKFVF 407

Query: 399 KGAFGYWIENGKIQYSVEEITISGKLQNMFKQIVAIGSDV 438
             +  Y I+NGKI   ++  T+ G    + ++I  +G D+
Sbjct: 408 STSEAYLIKNGKIVTPIKNTTLIGSGLEVMQKISMVGDDL 447


>sp|Q57684|Y231_METJA Uncharacterized protein MJ0231 OS=Methanocaldococcus jannaschii
           (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
           100440) GN=MJ0231 PE=4 SV=1
          Length = 416

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 100/203 (49%), Gaps = 9/203 (4%)

Query: 257 LAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGV 316
           L++ L+  F    S  ++ R  + L   +G++IF  +I II+D  +  +  SS  D EG 
Sbjct: 219 LSYTLMPAF----SAENVQRDRSVLKGKIGEQIFGENITIIDDGTLDYALYSSKCDGEGT 274

Query: 317 KTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGN-SGGAHHLIIISNKTKSSDNLKEMLKK 375
            TQK ++V+NG+++ Y      A + G  +TGN S G   L  +S         K  L  
Sbjct: 275 ATQKTVLVENGVLKNYLYDIKRANREGKTSTGNASRGYRSLPYVSPTNFIIKETKNSLDD 334

Query: 376 MNTGLLVTELMGDGI-NYITGDYS-KGAFGYWIENGKIQYSVEEITISGKLQNMFKQIVA 433
            +  + +  ++G    N ITGD++ +    Y+ +NGKI   ++     G +  MFK+ + 
Sbjct: 335 FDEYVYINGVIGSHTSNPITGDFAVEIQNSYYYKNGKI-IPIKRGMFGGNIFEMFKEAIP 393

Query: 434 IGSDVLTRNSNTSGSILIENMII 456
           + +DV  R    S S++ +  II
Sbjct: 394 L-NDVEQRGKLISPSVVFKGEII 415


>sp|Q89AE1|TLDD_BUCBP Protein TldD homolog OS=Buchnera aphidicola subsp. Baizongia
           pistaciae (strain Bp) GN=tldD PE=3 SV=1
          Length = 483

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 106/216 (49%), Gaps = 8/216 (3%)

Query: 231 AAKRTISRLKAKKISTRKCPVLFEAPLAFELLN-IFARLISGNSLYRKSTFLVDSLGKKI 289
           AA+  +  L A++  +   PV+  +     LL+      + G+   + ++   + +G+++
Sbjct: 232 AARIALINLSAQEAPSGTFPVVLGSGWPGVLLHEAVGHGLEGDFNRQGTSVFANKIGRQV 291

Query: 290 FSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGN 349
            S    I++D  +    GS + D+EG   Q  +++KNGI++ Y     +A+ + M  TGN
Sbjct: 292 ASELCTIVDDGTLKDRRGSLTIDDEGTPGQYNILIKNGILKKYLQDKTNARLMEMDLTGN 351

Query: 350 ---SGGAH-HLIIISNKTKSSD--NLKEMLKKMNTGLLVTELMGDGINYITGDYS-KGAF 402
                 AH  L  ++N    S   N KE++  ++ G+      G  ++  +G +    + 
Sbjct: 352 GRRESYAHLPLPRMTNTYMLSGPFNPKEIICSIDYGIYALNFSGGQVDITSGKFVFSTSE 411

Query: 403 GYWIENGKIQYSVEEITISGKLQNMFKQIVAIGSDV 438
            Y I+ GKI  S++ +T+ G   ++ K+I  +G+D+
Sbjct: 412 AYLIKQGKIGKSIKNVTLIGSGIDVMKEISMVGNDL 447


>sp|P45297|TLDD_HAEIN Protein TldD homolog OS=Haemophilus influenzae (strain ATCC 51907 /
           DSM 11121 / KW20 / Rd) GN=tldD PE=3 SV=1
          Length = 482

 Score = 59.3 bits (142), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 94/209 (44%), Gaps = 8/209 (3%)

Query: 231 AAKRTISRLKAKKISTRKCPVLFEAPLAFELLN-IFARLISGNSLYRKSTFLVDSLGKKI 289
           A ++ +  L A        PV+  A     LL+      + G+   ++S+     +G+++
Sbjct: 231 AVRQALVNLSAVAAPAGLMPVVLGAGWPGVLLHEAVGHGLEGDFNRKESSLFTGKIGEQV 290

Query: 290 FSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGN 349
            S    I++D  I    GS + D+EGV +Q  +++K+GI+QGY     +A+ +G+ TTGN
Sbjct: 291 TSPLCTIVDDGTIENRRGSLTIDDEGVPSQCNVLIKDGILQGYMQDKMNARLMGVSTTGN 350

Query: 350 S---GGAHHLIIISNKT---KSSDNLKEMLKKMNTGLLVTELMGDGINYITGDYS-KGAF 402
                 AH  +     T          +++  +  G+      G  ++  +G +    + 
Sbjct: 351 GRRESYAHLPMPRMTNTYMLAGQSQFDDLIASVKQGIYAPHFGGGQVDITSGKFVFSTSE 410

Query: 403 GYWIENGKIQYSVEEITISGKLQNMFKQI 431
            Y IE GKI   V+  T+ G    + ++I
Sbjct: 411 AYLIEKGKITKPVKGATLIGSGIEVMQKI 439


>sp|P0AGH0|TLDD_SHIFL Protein TldD OS=Shigella flexneri GN=tldD PE=3 SV=1
          Length = 481

 Score = 59.3 bits (142), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 8/216 (3%)

Query: 231 AAKRTISRLKAKKISTRKCPVLFEAPLAFELLN-IFARLISGNSLYRKSTFLVDSLGKKI 289
           A +  +  L A        PV+  A     LL+      + G+   R ++     +G+ +
Sbjct: 230 AVRMALVNLSAVAAPAGTMPVVLGAGWPGVLLHEAVGHGLEGDFNRRGTSVFSGQVGELV 289

Query: 290 FSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGN 349
            S    +++D  ++   GS + D+EG   Q  ++++NGI++GY     +A+ +GM  TGN
Sbjct: 290 ASELCTVVDDGTMVDRRGSVAIDDEGTPGQYNVLIENGILKGYMQDKLNARLMGMTPTGN 349

Query: 350 SGGAHHLIIISNKTKSSDNL------KEMLKKMNTGLLVTELMGDGINYITGDYS-KGAF 402
                +  +   +  ++  L      +E+++ +  G+      G  ++  +G +    + 
Sbjct: 350 GRRESYAHLPMPRMTNTYMLPGKSTPQEIIESVEYGIYAPNFGGGQVDITSGKFVFSTSE 409

Query: 403 GYWIENGKIQYSVEEITISGKLQNMFKQIVAIGSDV 438
            Y IENGK+   V+  T+ G      +QI  +G+D+
Sbjct: 410 AYLIENGKVTKPVKGATLIGSGIETMQQISMVGNDL 445


>sp|P0AGG8|TLDD_ECOLI Protein TldD OS=Escherichia coli (strain K12) GN=tldD PE=1 SV=1
          Length = 481

 Score = 59.3 bits (142), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 8/216 (3%)

Query: 231 AAKRTISRLKAKKISTRKCPVLFEAPLAFELLN-IFARLISGNSLYRKSTFLVDSLGKKI 289
           A +  +  L A        PV+  A     LL+      + G+   R ++     +G+ +
Sbjct: 230 AVRMALVNLSAVAAPAGTMPVVLGAGWPGVLLHEAVGHGLEGDFNRRGTSVFSGQVGELV 289

Query: 290 FSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGN 349
            S    +++D  ++   GS + D+EG   Q  ++++NGI++GY     +A+ +GM  TGN
Sbjct: 290 ASELCTVVDDGTMVDRRGSVAIDDEGTPGQYNVLIENGILKGYMQDKLNARLMGMTPTGN 349

Query: 350 SGGAHHLIIISNKTKSSDNL------KEMLKKMNTGLLVTELMGDGINYITGDYS-KGAF 402
                +  +   +  ++  L      +E+++ +  G+      G  ++  +G +    + 
Sbjct: 350 GRRESYAHLPMPRMTNTYMLPGKSTPQEIIESVEYGIYAPNFGGGQVDITSGKFVFSTSE 409

Query: 403 GYWIENGKIQYSVEEITISGKLQNMFKQIVAIGSDV 438
            Y IENGK+   V+  T+ G      +QI  +G+D+
Sbjct: 410 AYLIENGKVTKPVKGATLIGSGIETMQQISMVGNDL 445


>sp|P0AGG9|TLDD_ECOL6 Protein TldD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928
           / UPEC) GN=tldD PE=3 SV=1
          Length = 481

 Score = 59.3 bits (142), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 8/216 (3%)

Query: 231 AAKRTISRLKAKKISTRKCPVLFEAPLAFELLN-IFARLISGNSLYRKSTFLVDSLGKKI 289
           A +  +  L A        PV+  A     LL+      + G+   R ++     +G+ +
Sbjct: 230 AVRMALVNLSAVAAPAGTMPVVLGAGWPGVLLHEAVGHGLEGDFNRRGTSVFSGQVGELV 289

Query: 290 FSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGN 349
            S    +++D  ++   GS + D+EG   Q  ++++NGI++GY     +A+ +GM  TGN
Sbjct: 290 ASELCTVVDDGTMVDRRGSVAIDDEGTPGQYNVLIENGILKGYMQDKLNARLMGMTPTGN 349

Query: 350 SGGAHHLIIISNKTKSSDNL------KEMLKKMNTGLLVTELMGDGINYITGDYS-KGAF 402
                +  +   +  ++  L      +E+++ +  G+      G  ++  +G +    + 
Sbjct: 350 GRRESYAHLPMPRMTNTYMLPGKSTPQEIIESVEYGIYAPNFGGGQVDITSGKFVFSTSE 409

Query: 403 GYWIENGKIQYSVEEITISGKLQNMFKQIVAIGSDV 438
            Y IENGK+   V+  T+ G      +QI  +G+D+
Sbjct: 410 AYLIENGKVTKPVKGATLIGSGIETMQQISMVGNDL 445


>sp|Q8K9F2|TLDD_BUCAP Protein TldD homolog OS=Buchnera aphidicola subsp. Schizaphis
           graminum (strain Sg) GN=tldD PE=3 SV=1
          Length = 483

 Score = 53.1 bits (126), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 87/181 (48%), Gaps = 15/181 (8%)

Query: 269 ISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVKNGI 328
           + G+   R ++   + + KK+ S    II+D  +    GS + D+EGV  Q  ++++NGI
Sbjct: 271 LEGDFNRRGTSIFTNMIEKKVASELCTIIDDGTMKNQRGSLNIDDEGVPGQCNVLIENGI 330

Query: 329 IQGYFLSTYSAKKLGMKTTGNS--GGAHHL--------IIISNKTKSSDNLKEMLKKMNT 378
           ++ Y     +A+ +  K+TGN       HL         +I  K+K    L++++  ++ 
Sbjct: 331 LKKYMQDKLNARLMNTKSTGNGRRESYSHLPMPRMTNTYMIPGKSK----LEDIINSVDY 386

Query: 379 GLLVTELMGDGINYITGDYS-KGAFGYWIENGKIQYSVEEITISGKLQNMFKQIVAIGSD 437
           G+      G  ++  +G +    +  Y ++ GKI   +   T+ G    + +QI  +G+D
Sbjct: 387 GIYAINFSGGQVDITSGQFVFSTSEAYLVKKGKIFSPIRNTTLIGSGLEVMQQISMVGND 446

Query: 438 V 438
           +
Sbjct: 447 L 447


>sp|P74002|Y1322_SYNY3 Uncharacterized protein slr1322 OS=Synechocystis sp. (strain PCC
           6803 / Kazusa) GN=slr1322 PE=3 SV=1
          Length = 489

 Score = 47.0 bits (110), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/173 (20%), Positives = 83/173 (47%), Gaps = 8/173 (4%)

Query: 266 ARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVK 325
             L+    +  K+T  +D  G+KI   ++   ++     +FG+   D+EG+ TQ+ L+++
Sbjct: 278 GHLLETTQIEHKTTPFLDKKGEKIAHENLTAWDEGLTDNAFGTIDMDDEGMPTQRTLLIE 337

Query: 326 NGIIQGYFLSTYSAKKLGMKTTGNSGGAHHLIIISNKTKSS------DNLKEMLKKMNTG 379
           NGI++ +      + + G   TG+     +    +++ +++       ++ ++   +  G
Sbjct: 338 NGILKNFIADRTGSIRTGHPRTGSGRRQSYAYAAASRMRNTYIAPGNYSVDDIFNSVEKG 397

Query: 380 LLVTELMGDGINYITGDYSKG-AFGYWIENGKIQYSVEEITISGKLQNMFKQI 431
           +   + MG G    TG+++   +  Y +ENGK+   ++  T+ G    +  +I
Sbjct: 398 IYCKQ-MGGGSVGATGEFNFAVSEAYLVENGKLTKPLKGATLIGTATEIMNKI 449


>sp|Q92372|RFA1_SCHPO Replication factor A protein 1 OS=Schizosaccharomyces pombe (strain
           972 / ATCC 24843) GN=ssb1 PE=1 SV=1
          Length = 609

 Score = 36.2 bits (82), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 171 QQSHFLLANSHGFMSGYPFSKHIISISPIAIKGKEMQRDNWYSSNSDPKKLDQPEIIGFY 230
           Q+SH L     G   G  F+KH +  S ++  G+  +R N     ++   L   E   ++
Sbjct: 401 QESHLLKGWYDGQGRGQEFAKHSVISSTLSTTGRSAERKNIAEVQAE--HLGMSETPDYF 458

Query: 231 AAKRTISRLKAKKISTRKCP 250
           + K TI  ++ K +S   CP
Sbjct: 459 SLKGTIVYIRKKNVSYPACP 478


>sp|Q9IA31|GLI3_CHICK Transcriptional activator GLI3 (Fragment) OS=Gallus gallus GN=GLI3
            PE=1 SV=1
          Length = 1544

 Score = 34.7 bits (78), Expect = 1.7,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 302  ILGSFGSSSFDNEGVKTQKRLVVKNGIIQGYFLS----TYSAKKL---GMKTTGNSGGAH 354
            +LGS  SSSF  +  K     V +  +I G   S    T   +KL    M  +GN     
Sbjct: 1231 VLGSGASSSFGMQPNKPYGESVSRQPMIFGAMDSSCGITVQGQKLRSSNMPVSGNQQNFG 1290

Query: 355  HLIIISNKTKSSDNLKEMLKKMNTGLLVTELMGDGINY 392
            H I  S++  S  N  +    M    L  EL+GDGI+Y
Sbjct: 1291 HPIASSDQATSMANGMQNRNVMEQEYLQNELVGDGIHY 1328


>sp|Q9URV2|APC1_SCHPO Anaphase-promoting complex subunit 1 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=cut4 PE=1 SV=1
          Length = 1458

 Score = 33.9 bits (76), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 383 TELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQIVAIGSDV 438
            E++GD ++YI  D+    F Y ++  KI  ++     SGK     K IV I  D+
Sbjct: 26  VEIIGDAVHYIVNDHLNRVFNYTVDQQKIHAALITTFASGK-----KAIVVILDDI 76


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.134    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,642,909
Number of Sequences: 539616
Number of extensions: 7180598
Number of successful extensions: 16731
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 16690
Number of HSP's gapped (non-prelim): 32
length of query: 459
length of database: 191,569,459
effective HSP length: 121
effective length of query: 338
effective length of database: 126,275,923
effective search space: 42681261974
effective search space used: 42681261974
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)