RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8848
(459 letters)
>3qtd_A PMBA protein; putative modulator of gyrase (PMBA), structural
genomics, PS biology, midwest center for structural
genomics, MCSG; 2.70A {Pseudomonas aeruginosa}
Length = 449
Score = 517 bits (1333), Expect = 0.0
Identities = 171/444 (38%), Positives = 271/444 (61%), Gaps = 8/444 (1%)
Query: 16 SEFQQLAQDMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQD 75
+ ++ + ++ A++ GAS + + G S VR+G+++ +E N D+ + +Y
Sbjct: 14 PDLREQVEQIIAEARRQGASACEVAVSLEQGLSTSVRQGEVETVEFNRDQGFGITLYA-- 71
Query: 76 GKKMFYGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPDENTLEMNPLDFKLYTPW 135
G++ G++STS + ++ +T+ AA IAR T+ D AGL D + + LY PW
Sbjct: 72 GQRK--GSASTSATGEAAIRETVAAALAIARHTSEDECAGLADAALMARELPELDLYHPW 129
Query: 136 FLSIDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQSHFLLANSHGFMSGYPFSKHIIS 195
LS + A A CE AF + + + T + T Q + NSHGF+ GY ++H +S
Sbjct: 130 SLSPEQAVERALACEAAAFAADKRVTKADGTTLNTHQGCRVYGNSHGFIGGYASTRHSLS 189
Query: 196 ISPIAIKGKEMQRDNWYSSNSDPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCPVLFEA 255
IA +MQRD WY N + L E IG AA+R SRL A+ + T + PVLF
Sbjct: 190 CVMIAEGEGQMQRDYWYDVNRRGEALASAESIGRRAAERAASRLGARPVQTAEVPVLFAP 249
Query: 256 PLAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEG 315
+A L F ISG SLYRKS+FL +LG+++F + I E PH++G+ GS+SFD++G
Sbjct: 250 EIAVGLFGHFLGAISGGSLYRKSSFLEGALGQRLFPEWLSIDERPHLVGALGSASFDSDG 309
Query: 316 VKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGNSGGAHHLIIISNKTKSSDNLKEMLKK 375
+ T + V+NG + Y L TYS +KLG+ +T N+GG H+L + + ++ ++++
Sbjct: 310 LATYAKPFVENGELVSYVLGTYSGRKLGLPSTANAGGVHNLFV----SHGDEDQAALIRR 365
Query: 376 MNTGLLVTELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQIVAIG 435
M GLLVTELMG G+N +TGDYS+GA GYW+ENG+IQ+ V+E+TI+ L+++F++IVA+G
Sbjct: 366 MERGLLVTELMGQGVNLVTGDYSRGAAGYWVENGEIQFPVQEVTIAANLRDLFRRIVAVG 425
Query: 436 SDVLTRNSNTSGSILIENMIIAGK 459
D+ R + +GS+L+E+M++AG+
Sbjct: 426 KDIERRGNLHTGSVLVESMMVAGR 449
>3tv9_A Putative peptide maturation protein; structural genomics, center
for structural genomics of infec diseases, csgid,
alpha-beta, cytosol; 2.50A {Shigella flexneri}
Length = 457
Score = 506 bits (1306), Expect = e-178
Identities = 166/456 (36%), Positives = 271/456 (59%), Gaps = 9/456 (1%)
Query: 1 MEQLIKNRSKFIYSKSEFQQLAQDMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDVIE 60
++ +N ++ ++ L A + + + ++ G SV R G+++ +E
Sbjct: 11 VDLGTENLYFQSNARKILEEAVSTALELASG-KSDGAEVAVSKTTGISVSTRYGEVENVE 69
Query: 61 QNNDKNMNVIIYIQDGKKMFYGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPDEN 120
N+D + + +Y + G++S++D +++ T+ AA +IAR+T+ D AG+ D+
Sbjct: 70 FNSDGALGITVYH--QNRK--GSASSTDLSPQAIARTVQAALDIARYTSPDPCAGVADKE 125
Query: 121 TLEMNPLDFKLYTPWFLSIDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQSHFLLANS 180
L + + L+ P +S D+A +A R E A + I N E + + NS
Sbjct: 126 LLAFDAPNLDLFHPAEVSPDEAIELAARAEQAALQADKRITNTEGGSFNSHYGVKVFGNS 185
Query: 181 HGFMSGYPFSKHIISISPIAIKGKEMQRDNWYSSNSDPKKLDQPEIIGFYAAKRTISRLK 240
HG + GY ++H + IA + +M+RD Y+ L PE +G A+RT+SRL
Sbjct: 186 HGMLQGYCSTRHSLFSCVIAEENGDMERDYAYTIGRAMSDLQTPEWVGADCARRTLSRLS 245
Query: 241 AKKISTRKCPVLFEAPLAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDP 300
+K+ST K PV+F +A L I+G S+YRKSTFL+DSLGK+I + I E P
Sbjct: 246 PRKLSTMKAPVIFANEVATGLFGHLVGAIAGGSVYRKSTFLLDSLGKQILPDWLTIEEHP 305
Query: 301 HILGSFGSSSFDNEGVKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGNSGGAHHLIIIS 360
H+L S+ FD+EGV+T++R ++K+GI+ + L++YSA+KLG+K+TG++GG H+ I
Sbjct: 306 HLLKGLASTPFDSEGVRTERRDIIKDGILTQWLLTSYSARKLGLKSTGHAGGIHNWRI-- 363
Query: 361 NKTKSSDNLKEMLKKMNTGLLVTELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITI 420
+ ++MLK+M TGL+VTELMG G++ ITGDYS+GA G+W+ENG+IQY V EITI
Sbjct: 364 --AGQGLSFEQMLKEMGTGLVVTELMGQGVSAITGDYSRGAAGFWVENGEIQYPVSEITI 421
Query: 421 SGKLQNMFKQIVAIGSDVLTRNSNTSGSILIENMII 456
+G L++M++ IV +G+D+ TR++ GS+L+ M I
Sbjct: 422 AGNLKDMWRNIVTVGNDIETRSNIQCGSVLLPEMKI 457
>1vpb_A Putative modulator of DNA gyrase; structural genomics, joint for
structural genomics, JCSG, protein structure initiative
hydrolase; 1.75A {Bacteroides thetaiotaomicron} SCOP:
d.283.1.1
Length = 451
Score = 485 bits (1252), Expect = e-170
Identities = 115/449 (25%), Positives = 216/449 (48%), Gaps = 16/449 (3%)
Query: 14 SKSEFQQLAQDMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYI 73
E ++LAQ ++YA K G + + + S +R K+D ++Q ++ +++ +Y+
Sbjct: 14 ITDENKKLAQWAMDYALKNGCQAAKVLLYSSSNTSFELRDAKMDRLQQASEGGLSLSLYV 73
Query: 74 QDGKKMFYGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPDENTL-EMNPLDFKLY 132
+ G+ ST+ +K L I + R+ A D L D + + D KLY
Sbjct: 74 --DGRY--GSISTNRLNRKELETFIKNGIDSTRYLAKDEARVLADPSRYYKGGKPDLKLY 129
Query: 133 TPWFLSIDDAKLIAY--RCENEAFNFNSLIVNNENTGVTTQQSHFLLANSHGFMSGYPFS 190
F S++ I EA + + + + + S+GF +
Sbjct: 130 DAKFASLNPDDKIEMAKAVAEEALGKDE-RIISVGSSYGDGEDFAYRLISNGFEGETKST 188
Query: 191 KHIISISPIAIK-GKEMQRDNWYSSNSDPKKLDQPEIIGFYAAKRTISRLKAKKISTRKC 249
+ +S G+ WY S+ L + IG A +R + +L KK+ + K
Sbjct: 189 WYSLSADITIRGEGEARPSAYWYESSLYMNDLI-KKGIGQKALERVLRKLGQKKVQSGKY 247
Query: 250 PVLFEAPLAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSS 309
++ + + LL+ ++G++L +K++FL++ L +KI S + + ++PH++ + G+
Sbjct: 248 TMVVDPMNSSRLLSPMISALNGSALQQKNSFLLNKLNEKIASDRLTLTDEPHLVKASGAR 307
Query: 310 SFDNEGVKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGNSGGAHHLIIISNKTKSSDNL 369
FDNEG+ T++R + G++ YF+ TY+AKK+G+ T + G+ L++ NL
Sbjct: 308 YFDNEGIATERRSIFDKGVLNTYFIDTYNAKKMGVDPTIS--GSSILVM----ETGDKNL 361
Query: 370 KEMLKKMNTGLLVTELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITISGKLQNMFK 429
++ + G+LVT G N TGD+S G G+ IENGK+ V E+ ++G L ++
Sbjct: 362 DGLIAGVEKGILVTGFNGGNNNSSTGDFSYGIEGFLIENGKLTQPVSEMNVTGNLITLWN 421
Query: 430 QIVAIGSDVLTRNSNTSGSILIENMIIAG 458
+VA G+D +S S++ E + +G
Sbjct: 422 SLVATGNDPRLNSSWRIPSLVFEGVDFSG 450
>1vl4_A PMBA-related protein; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS regulation; 1.95A {Thermotoga maritima} SCOP:
d.283.1.1
Length = 447
Score = 455 bits (1174), Expect = e-159
Identities = 113/449 (25%), Positives = 209/449 (46%), Gaps = 21/449 (4%)
Query: 17 EFQQLAQDMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQDG 76
F++ + AKK G I F E FS+ + G +D N+ + + DG
Sbjct: 14 TFEEFKDRLFALAKKNGVE-VQISFLETREFSLRLANGDLDQYTDAGKFNVEIKVLK-DG 71
Query: 77 KKMFYGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPDENTLEMNPLDFKLYTPWF 136
K G T ++ A + + S+ + E ++ +
Sbjct: 72 KT---GTFRTQVL--ENPEKCFEEALSNLQVKDSEEKEYFFEGGK-EYREMETYVGRFEK 125
Query: 137 LSIDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQSHFLLANSHGFMSGYPFSKHIISI 196
LS+ + +A + A +V ++ N+ G +
Sbjct: 126 LSVKEKMDMAKKAHESAAKDER-VVMVPTVMYKDMVIKKIITNTLGLDVESQMDGGFLFA 184
Query: 197 SPIAIKGKEMQRDNWYSSNSDPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCPVLFEAP 256
IA + + +WY P+ L+ PE IG AA+ IS + +K I + K PVL
Sbjct: 185 MAIA-RDANPRSGSWYELARTPEDLN-PEEIGKRAAEEAISLIGSKTIPSGKYPVLMRNT 242
Query: 257 LAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGV 316
+L+ +F +IS ++ + + L LG+++ + + I + P+ S+ FD+EGV
Sbjct: 243 ALLDLMEMFIPMISAENVQKNLSPLKGKLGEQVGNPAVSIKDLPYHPKGLSSTPFDDEGV 302
Query: 317 KTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGN----SGGAHHLIIISNKTKSSDNLKEM 372
T ++ V++NG+++ + + +A+K G++ TGN +L++ + +E+
Sbjct: 303 PTTEKFVLENGVLKTFLHNLKTARKEGVEPTGNGFVGGIRPVNLML----MPGEKSFEEL 358
Query: 373 LKKMNTGLLVTELMGD--GINYITGDYSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQ 430
LK+M+ G+++TE+ G G N I+G++S A GYW+ENG+I + VE+ITISG ++ ++
Sbjct: 359 LKEMDRGVVITEVEGMHAGANSISGEFSLFAKGYWVENGEIAHGVEDITISGNFLDLLRK 418
Query: 431 IVAIGSDVLTRNSNTSGSILIENMIIAGK 459
IV +G+DV + S+L+E + +AGK
Sbjct: 419 IVLVGNDVKVSQHTIAPSVLVEVLDVAGK 447
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 8e-09
Identities = 74/570 (12%), Positives = 160/570 (28%), Gaps = 223/570 (39%)
Query: 5 IKNRSKFIYSKSEFQQLAQ--DMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDVIEQN 62
+++ K I SK E + D ++ ++ ++ + FV +V+ N
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRL---FWTLLSKQEEMVQKFVE----EVLRIN 90
Query: 63 ------------NDKNMNVIIYIQDGKKMFYGNSSTSDF--CKKSLYDTI-NAAYNI--- 104
+M +YI+ +++ N + + + Y + A +
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 105 ----------------ARFTASD-----NFAG----------LPDENTLEM-NPLDFKLY 132
A E LEM L +++
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 133 TPWFLSIDDAKLIAYRCEN------------------------------EAFNFNS--LI 160
W D + I R + AFN + L+
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 161 --------------------VNNENTGVTTQQSHFLLANSHGFMSGYPFSKHIISISPIA 200
+++ + +T + LL + +++ +P
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREVLTTNPRR 329
Query: 201 IK--GKEMQR-----DNWYSSNSDPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCPVLF 253
+ + ++ DNW N D KL II + +++ L+ + RK
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCD--KLT--TII-----ESSLNVLEPAEY--RKM---- 374
Query: 254 EAPLAFELLNIF-------ARLIS---GNSLYRKSTFLVDSLGKK--------------- 288
F+ L++F L+S + + +V+ L K
Sbjct: 375 -----FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 289 --IFSSHIQIIEDP--H--ILGSFG-SSSFDNEGVKTQKRLVVKNGIIQGYFLSTYSAKK 341
+++ + H I+ + +FD++ + + YF S +
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY--------LDQYFYS-H---- 476
Query: 342 LGMKTTGNSGGAHHLIIISNKTKSSDNLKEMLKKMNTGLLVTELMGDGINYITGDYSKGA 401
+G HHL K + + + ++ D+
Sbjct: 477 IG----------HHL-----KNIEHPERMTLFRMV---------------FL--DFR--- 501
Query: 402 FGYWIENGKIQYSVEEITISGKLQNMFKQI 431
++E KI++ SG + N +Q+
Sbjct: 502 ---FLEQ-KIRHDSTAWNASGSILNTLQQL 527
Score = 36.8 bits (84), Expect = 0.019
Identities = 44/266 (16%), Positives = 82/266 (30%), Gaps = 70/266 (26%)
Query: 2 EQLIKNRSKFIYSKSEFQQLAQDMLNYAKKIGASHSSIEFNEG----NGFSVFVRKGKI- 56
E + + + ++ + D L I +S + +E E + SVF I
Sbjct: 335 ESIRDGLATWDN----WKHVNCDKLT--TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 57 ---------DVIEQNNDKNMNVII----YIQDGKKMFYG-NSSTSDFCKK-----SLYDT 97
DVI+ + +N + + K+ S + K +L+ +
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 98 INAAYNIARFTASDNFAGLPDEN-----------TLEMNPLDFKLYTPWFLSID--DAKL 144
I YNI + SD+ + +E P L+ FL + K+
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH-PERMTLFRMVFLDFRFLEQKI 507
Query: 145 IA--YRCENEAFNFNSL---------IVNNENT--GVTTQQSHFLLANSHGFMSGYPFSK 191
N+L I +N+ + FL + SK
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC----SK 563
Query: 192 H--IISI------SPIAIKG-KEMQR 208
+ ++ I I + K++QR
Sbjct: 564 YTDLLRIALMAEDEAIFEEAHKQVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 6e-06
Identities = 77/441 (17%), Positives = 139/441 (31%), Gaps = 149/441 (33%)
Query: 85 STSDFCKKS-LYDTINAAYNIARFTASDNFAGLPDENTLEMNPLDFKLYTPWFLSIDDAK 143
T+ F S L + N ++ FA DE T P + L FL
Sbjct: 23 PTASFFIASQLQEQFNKILP----EPTEGFAA-DDEPT---TPAE--LVGK-FLG----- 66
Query: 144 LIAYRCE-NEAFNFNSLIVNNENTGVTTQQSHFLLANS-HGFMSGYPFSKHIISISPIAI 201
++ E ++ F+ ++ N +T ++ +L N H +
Sbjct: 67 YVSSLVEPSKVGQFDQVL----NLCLTEFENCYLEGNDIHALAAKLL------------- 109
Query: 202 KGKEMQRDNWYSSNSDPKKLDQPEII-GFYAAKRTISRLKAKKISTRKCPVLFEAPLAFE 260
+D + E+I + A+ R + LF A
Sbjct: 110 ------------QENDTTLVKTKELIKNYITARIMAKR----PFDKKSNSALFRAVGEGN 153
Query: 261 LLNIFARLIS-----GNS---------LYRKSTFLVDSL-----------------GKKI 289
A+L++ GN+ LY+ LV L +K+
Sbjct: 154 -----AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 290 FSSHIQI---IEDPHILGS---FGSS--SFDNEGVKTQKRLVVKNGIIQGYFLSTY--SA 339
F+ + I +E+P S S G+IQ L+ Y +A
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISC------------PLIGVIQ---LAHYVVTA 253
Query: 340 KKLGM-------KTTGNSGGAHHLI---IISNKTKSSDNLKEMLKKMNTGLLVTELMGDG 389
K LG G +G + L+ I+ +T S ++ ++K T L
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIA-ETDSWESFFVSVRKAITVLF-------- 304
Query: 390 INYITGDYSKGAFG-YWIENGKIQYSVEE--------ITISGKLQNMFKQIVAIGSDVLT 440
+I G A+ + ++ S+E ++IS Q + V + L
Sbjct: 305 --FI-GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 441 RNSNTSGSILI---ENMIIAG 458
S L+ +N++++G
Sbjct: 362 AGKQVEIS-LVNGAKNLVVSG 381
Score = 43.9 bits (103), Expect = 1e-04
Identities = 40/260 (15%), Positives = 82/260 (31%), Gaps = 93/260 (35%)
Query: 178 ANSHGFMSGYPFS-KHIISISPIAI-------KGKEMQRDNWYSSNSDPKKLDQPEIIGF 229
A++H F Y FS I+ +P+ + KGK + R+N YS+ +D G
Sbjct: 1649 ADNH-FKDTYGFSILDIVINNPVNLTIHFGGEKGKRI-REN-YSAMIFETIVD-----GK 1700
Query: 230 YAAKRTISRLKAKKISTRKCPVLFEAPLAFELLN--------IFARLISGNSLYR--KST 279
++ + S F + LL+ + + + + KS
Sbjct: 1701 LKTEKIFKEINEHSTS-----YTFRSEK--GLLSATQFTQPALTL--ME-KAAFEDLKSK 1750
Query: 280 FLVD--------SLG---------KKI-FSSHIQII------------EDPHILGSFG-- 307
L+ SLG + S ++++ D ++G
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 308 -------SSSFDNEGVKTQKRLVVKNGIIQGYFLST--YSAKKLGMKTTGNSGGAHHLII 358
++SF E ++ +V + G G+ + Y N +
Sbjct: 1811 AINPGRVAASFSQEALQ---YVVERVGKRTGWLVEIVNY-----------NVENQ--QYV 1854
Query: 359 ISNKTKSSDNLKEMLKKMNT 378
+ ++ D + +L +
Sbjct: 1855 AAGDLRALDTVTNVLNFIKL 1874
Score = 32.7 bits (74), Expect = 0.34
Identities = 63/388 (16%), Positives = 94/388 (24%), Gaps = 187/388 (48%)
Query: 14 SKSEFQQLAQDMLNYAKKIGA-SH--------------SSIEFNEG--------NGFSVF 50
S F + + IG + S+E NEG + +
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT-- 345
Query: 51 VRKGKIDVIEQNNDK-NMNVIIYIQDGKKMFYGNSSTSDFCKKSLYDTINAAYNIARFTA 109
++ D + + N + I SL +N A
Sbjct: 346 -QEQVQDYVNKTNSHLPAGKQVEI-------------------SL---VNGA-------- 374
Query: 110 SDNF--AGLPDENTLEMNPLDFKLYTPWFLSIDDAKLIAYRCENEAFNFNSLIVNNENTG 167
N +G P LY L++ K A +G
Sbjct: 375 -KNLVVSGPPQS-----------LYG---LNLTLRKAKA------------------PSG 401
Query: 168 VTTQQSHFLLANSHGFMSGYPFSKHIISIS----PIAIKGKEMQRDNWYSSNSDPKKLDQ 223
QS PFS+ + S P+ + P
Sbjct: 402 --LDQSRI------------PFSERKLKFSNRFLPV----------------ASP----- 426
Query: 224 PEIIGF---Y---AAKRTISRLKAKKISTR----KCPVLFEAPLAFELLNIFARLISGNS 273
F A+ L +S + PV + F G+
Sbjct: 427 -----FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV----------YDTF----DGSD 467
Query: 274 LYRKSTFLVDSLGKKIFSSHIQIIEDP------------HILGSFGSSSFDNEGVKTQKR 321
L R L S+ ++I II P HIL FG GV T +
Sbjct: 468 L-RV---LSGSISERIVD---CIIRLPVKWETTTQFKATHIL-DFGPGGASGLGVLTHR- 518
Query: 322 LVVKNG----IIQGYFLSTYSAKKLGMK 345
K+G +I L G K
Sbjct: 519 --NKDGTGVRVIVAGTLDINPDDDYGFK 544
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.18
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 12/34 (35%)
Query: 119 ENTLEMNPLDFKLYTPWFLSIDDAKLIAYRCENE 152
+ +L KLY D A +A + E
Sbjct: 26 QASL-------KLYAD-----DSAPALAIKATME 47
>2v3i_A Exoglucanase 1; hydrolase, glycosidase, glycoprotein, carbohydrate
metabolism, polysaccharide degradation, pyrrolidone
carboxylic acid; HET: NAG XX6; 1.05A {Hypocrea jecorina}
SCOP: b.29.1.10 PDB: 1dy4_A* 1cel_A* 2v3r_A* 7cel_A*
6cel_A* 3cel_A* 2cel_A* 5cel_A* 4cel_A* 1q2b_A* 1egn_A*
1q2e_A* 2y9l_A* 2y9n_A*
Length = 434
Score = 30.3 bits (68), Expect = 1.6
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
Query: 41 FNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQDGKK---------MFYGNSSTSDFCK 91
+ G+ F++ K K+ V+ Q Y+Q+G + GN D+C
Sbjct: 274 YGPGSSFTLDTTK-KLTVVTQFETSGAINRYYVQNGVTFQQPNAELGSYSGNELNDDYCT 332
Query: 92 KS 93
Sbjct: 333 AE 334
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 29.3 bits (65), Expect = 2.5
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 13/58 (22%)
Query: 181 HGFMSGYPFSKH--------IISISP---IAIK--GKEMQRDNWYSSNSDPKKLDQPE 225
+SG S +I+ P IAI+ E+ +++ +D+
Sbjct: 145 IRIVSGLELSDTKQKGKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELN 202
Score = 27.4 bits (60), Expect = 9.4
Identities = 8/35 (22%), Positives = 10/35 (28%), Gaps = 10/35 (28%)
Query: 396 DYSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQ 430
D +W K Y +Q FKQ
Sbjct: 199 DELNKKCTFWDAISK-LYY---------VQFFFKQ 223
>1ojj_A Endoglucanase I; hydrolase, cellulose degradation, glycosynthase;
HET: BGC GAL GLC NAG; 1.4A {Humicola insolens} SCOP:
b.29.1.10 PDB: 1oji_A* 1ojk_A* 1dym_A* 1a39_A* 2a39_A*
Length = 402
Score = 29.1 bits (65), Expect = 2.8
Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 16/82 (19%)
Query: 44 GNGFSVFVRKGKIDVIEQ---NNDKNMNVI--IYIQDGKK----------MFYGNSSTSD 88
G F V K V+ Q N + I Y+QDGK + Y N +
Sbjct: 255 GEEFKVNTLK-PFTVVTQFLANRRGKLEKIHRFYVQDGKVIESFYTNKEGVPYTNMIDDE 313
Query: 89 FCKKSLYDTINAAYNIARFTAS 110
FC+ + +
Sbjct: 314 FCEATGSRKYMELGATQGMGEA 335
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis
disorder, zellweger syndrome, membrane, prenylation;
2.05A {Homo sapiens}
Length = 126
Score = 26.8 bits (59), Expect = 7.8
Identities = 9/70 (12%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 365 SSDNLKEMLKKMNTGLLVTELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITISGKL 424
N+ +++ + LL +++ + IT Y + W+++ + E+ +
Sbjct: 10 GEGNILPIMQSIMQNLLSKDVLYPSLKEITEKYPE-----WLQSHRESLPPEQFEKYQEQ 64
Query: 425 QNMFKQIVAI 434
++ +I
Sbjct: 65 HSVMCKICEQ 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.378
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,846,842
Number of extensions: 417615
Number of successful extensions: 745
Number of sequences better than 10.0: 1
Number of HSP's gapped: 723
Number of HSP's successfully gapped: 22
Length of query: 459
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 362
Effective length of database: 3,993,456
Effective search space: 1445631072
Effective search space used: 1445631072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.0 bits)